BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'D03F04.seq'
        (548 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 21 Sequences     : less than 21 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 8433 1266 |============================================================
   6310 7167  992 |===============================================
   3980 6175 1015 |================================================
   2510 5160  941 |============================================
   1580 4219  691 |================================
   1000 3528  665 |===============================
    631 2863  523 |========================
    398 2340  430 |====================
    251 1910  339 |================
    158 1571  222 |==========
    100 1349  206 |=========
   63.1 1143  203 |=========
   39.8  940  154 |=======
   25.1  786  119 |=====
   15.8  667   82 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 585  <<<<<<<<<<<<<<<<<
   10.0  585   73 |===
   6.31  512   81 |===
   3.98  431   56 |==
   2.51  375   55 |==
   1.58  320   47 |==
   1.00  273   27 |=
   0.63  246   25 |=
   0.40  221   31 |=
   0.25  190   19 |:
   0.16  171   20 |:
   0.10  151   10 |:
  0.063  141   19 |:
  0.040  122    1 |:
  0.025  121    3 |:
  0.016  118    7 |:
  0.010  111    8 |:
 0.0063  103    7 |:
 0.0040   96    5 |:
 0.0025   91   10 |:
 0.0016   81    3 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|6984222|gb|AAF34799.1|AF227979_1(AF227979) 40S rib... +1   703  2.4e-68   1
gi|1173209|sp|P46293|RS16_GOSHI40S RIBOSOMAL PROTEIN ... +1   689  7.3e-67   1
gi|4558679|gb|AAD22696.1|AC006586_5(AC006586) 40S rib... +1   673  3.6e-65   1
gi|2500430|sp|Q42340|RS16_ARATH40S RIBOSOMAL PROTEIN S16 +1   672  4.6e-65   1
gi|3122800|sp|O22647|RS16_FRIAG40S RIBOSOMAL PROTEIN ... +1   671  5.9e-65   1
gi|4574242|gb|AAD23965.1|AF108725_1(AF108725) ribosom... +1   652  6.1e-63   1
gi|6721162|gb|AAF26790.1|AC016829_14(AC016829) putati... +1   636  3.0e-61   1
gi|1172818|sp|P46294|RS16_ORYSA40S RIBOSOMAL PROTEIN ... +1   602  1.2e-57   1
gi|133808|sp|P16149|RS16_LUPPO40S RIBOSOMAL PROTEIN S... +1   575  2.4e-57   2
gi|4506691ref|NP_001011.1| ribosomal protein S16 [Hom... +1   581  2.0e-55   1
gi|7291436|gb|AAF46862.1|(AE003458) CG4046 gene produ... +1   571  2.3e-54   1
gi|7305445ref|NP_038675.1| ribosomal protein S16 [Mus... +1   569  3.8e-54   1
gi|70920|pir||R3MS16ribosomal protein S16 - mouse        +1   562  2.1e-53   1
gi|6094158|sp|O60144|RS16_SCHPO40S RIBOSOMAL PROTEIN ... +1   530  5.2e-50   1
gi|11276570|pir||T43419ribosomal protein S16 - fissio... +1   527  1.1e-49   1
gi|2500429|sp|Q22054|RS16_CAEELPROBABLE 40S RIBOSOMAL... +1   522  3.6e-49   1
gi|2500428|sp|Q29201|RS16_PIG40S RIBOSOMAL PROTEIN S16   +1   521  4.6e-49   1
gi|6320120ref|NP_010200.1| Ribosomal protein S16B (rp... +1   519  7.5e-49   1
gi|10720257|sp|O94017|RS16_CANAL40S RIBOSOMAL PROTEIN... +1   517  1.2e-48   1
gi|2119074|pir||S69289ribosomal protein S16.e.A - yea... +1   504  2.9e-47   1
gi|7388076|sp|O26146|RLSX_METTHFUSED L13/S9 RIBOSOMAL... +1   295  4.1e-25   1
gi|6647789|sp|O59299|RS9_PYRHO30S RIBOSOMAL PROTEIN S... +1   285  4.7e-24   1
gi|7440283|pir||H75171ssu ribosomal protein s9p (rps9... +1   285  4.7e-24   1
gi|10639602|emb|CAC11574.1|(AL445064) probable 30S ri... +1   274  6.9e-23   1
gi|134032|sp|P05763|RS9_HALMA30S RIBOSOMAL PROTEIN S9... +1   267  3.8e-22   1
gi|1710779|sp|P54024|RS9_METJA30S RIBOSOMAL PROTEIN S... +1   264  7.9e-22   1
gi|6685936|sp|Q9YB48|RS9_AERPE30S RIBOSOMAL PROTEIN S... +1   260  2.1e-21   1
gi|224156|prf||1011219Aprotein HS3 [Haloarcula marism... +1   256  5.6e-21   1
gi|11498729ref|NP_069958.1| SSU ribosomal protein S9P... +1   249  3.1e-20   1
gi|9827792|emb|CAB97881.1|(AL160493) probable 40s rib... +1   230  3.2e-18   1
gi|2500427|sp|P95992|RS9_SULSO30S RIBOSOMAL PROTEIN S... +1   221  2.9e-17   1
gi|730675|sp|P39468|RS9_SULAC30S RIBOSOMAL PROTEIN S9... +1   205  1.4e-15   1
gi|10580677|gb|AAG19523.1|(AE005043) 30S ribosomal pr... +1   185  1.9e-13   1
gi|11276572|pir||H81705ribosomal protein S9 TC0402 [i... +1   160  8.3e-11   1
gi|7388227|sp|O84128|RS9_CHLTR30S RIBOSOMAL PROTEIN S... +1   158  1.4e-10   1
gi|3914923|sp|O51313|RS9_BORBU30S RIBOSOMAL PROTEIN S... +1   155  2.8e-10   1
gi|7388236|sp|Q9X1G4|RS9_THEMA30S RIBOSOMAL PROTEIN S... +1   151  7.5e-10   1
gi|7388228|sp|Q9Z8T8|RS9_CHLPN30S RIBOSOMAL PROTEIN S... +1   150  9.6e-10   1
gi|11276573|pir||D8129430S ribosomal protein S9 Cj147... +1   144  4.1e-09   1
gi|2500422|sp|P56016|RS9_HELPY30S RIBOSOMAL PROTEIN S... +1   141  8.6e-09   1
gi|10835571|pdb|1FJF|IChain I, Structure Of The Therm... +1   132  7.7e-08   1
gi|11276569|pir||E8266930S ribosomal protein S9 XF153... +1   130  1.3e-07   1
gi|6094200|sp|O83987|RS9_TREPA30S RIBOSOMAL PROTEIN S... +1   129  1.6e-07   1
gi|134031|sp|P02363|RS9_ECOLI30S RIBOSOMAL PROTEIN S9... +1   128  2.0e-07   1
gi|10172781|dbj|BAB03888.1|(AP001507) 30S ribosomal p... +1   125  4.3e-07   1
gi|11276574|pir||A8101230S ribosomal protein S9 NMB20... +1   124  5.4e-07   1
gi|134028|sp|P07842|RS9_BACST30S RIBOSOMAL PROTEIN S9... +1   122  8.9e-07   1
gi|223001|prf||0401169Aprotein S9 [Escherichia coli]     +1   122  8.9e-07   1
gi|9663510|emb|CAC00862.1|(AL390935) probable proteop... +2   119  1.8e-06   1
gi|7473855|pir||F75552ribosomal protein S9 - Deinococ... +1   119  1.8e-06   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 535 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|6984222|gb|AAF34799.1|AF227979_1  (AF227979) 40S ribosomal protein S16
            [Euphorbia esula]
            Length = 144

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 703 (247.5 bits), Expect = 2.4e-68, P = 2.4e-68
 Identities = 136/144 (94%), Positives = 139/144 (96%), Frame = +1

Query:   106 APAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHR 285
             A    E VQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA+EPILLLGRHR
Sbjct:     1 AATPTESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query:   286 FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 465
             FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQK+VDEQSKKEIKDILVRYDRTLLVA
Sbjct:    61 FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVA 120

Query:   466 DPRRCEPKKFGGRGARARFQKSYR 537
             DPRRCEPKKFGGRGARARFQKSYR
Sbjct:   121 DPRRCEPKKFGGRGARARFQKSYR 144


 >gi|1173209|sp|P46293|RS16_GOSHI  40S RIBOSOMAL PROTEIN S16
            >gi|541835|pir||S41193 ribosomal protein S16 protein - upland
            cotton >gi|439654|emb|CAA53567.1| (X75954) RS16 protein, 40S
            subunit [Gossypium hirsutum]
            Length = 145

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 13..39
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 56..91
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 119..145
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   13..145
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        13..144
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 73..91
__________________


  Plus Strand HSPs:

 Score = 689 (242.5 bits), Expect = 7.3e-67, P = 7.3e-67
 Identities = 135/144 (93%), Positives = 137/144 (95%), Frame = +1

Query:   106 APAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHR 285
             A  AIE VQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR R
Sbjct:     2 AEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQR 61

Query:   286 FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 465
             F GVDMRIRVKGGGHTSQIYAIRQSIAKALVA+YQKYVDEQSKKEIKDILV YDRTLLVA
Sbjct:    62 FTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVA 121

Query:   466 DPRRCEPKKFGGRGARARFQKSYR 537
             DPRRCEPKKFGGRGARARFQKSYR
Sbjct:   122 DPRRCEPKKFGGRGARARFQKSYR 145


 >gi|4558679|gb|AAD22696.1|AC006586_5  (AC006586) 40S ribosomal protein S16
            [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 673 (236.9 bits), Expect = 3.6e-65, P = 3.6e-65
 Identities = 128/145 (88%), Positives = 136/145 (93%), Frame = +1

Query:   103 AAPAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRH 282
             A   A E VQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEPILLLG+H
Sbjct:     2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61

Query:   283 RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 462
             RFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct:    62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query:   463 ADPRRCEPKKFGGRGARARFQKSYR 537
             ADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   122 ADPRRCEPKKFGGRGARSRYQKSYR 146


 >gi|2500430|sp|Q42340|RS16_ARATH  40S RIBOSOMAL PROTEIN S16
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 14..40
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 57..92
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 120..146
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   14..146
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        14..145
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 74..92
__________________


  Plus Strand HSPs:

 Score = 672 (236.6 bits), Expect = 4.6e-65, P = 4.6e-65
 Identities = 127/145 (87%), Positives = 136/145 (93%), Frame = +1

Query:   103 AAPAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRH 282
             A   A E VQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEP+LLLG+H
Sbjct:     2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61

Query:   283 RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 462
             RFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct:    62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121

Query:   463 ADPRRCEPKKFGGRGARARFQKSYR 537
             ADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   122 ADPRRCEPKKFGGRGARSRYQKSYR 146


 >gi|3122800|sp|O22647|RS16_FRIAG  40S RIBOSOMAL PROTEIN S16
            >gi|2641209|gb|AAB86856.1| (AF031546) ribosomal protein S16
            [Fritillaria agrestis]
            Length = 145

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 13..39
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 56..91
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 119..145
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   13..145
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        13..144
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 73..91
__________________


  Plus Strand HSPs:

 Score = 671 (236.2 bits), Expect = 5.9e-65, P = 5.9e-65
 Identities = 129/145 (88%), Positives = 138/145 (95%), Frame = +1

Query:   103 AAPAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRH 282
             A PA  E VQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KAFEPILLLGRH
Sbjct:     2 ATPAT-ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query:   283 RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 462
             RF GVDMRIRV+GGG TSQIYAIRQSIAKALVAYYQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct:    61 RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query:   463 ADPRRCEPKKFGGRGARARFQKSYR 537
             ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct:   121 ADPRRCEPKKFGGRGARSRFQKSYR 145


 >gi|4574242|gb|AAD23965.1|AF108725_1  (AF108725) ribosomal protein S16 [Tortula
            ruralis]
            Length = 142

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 652 (229.5 bits), Expect = 6.1e-63, P = 6.1e-63
 Identities = 125/142 (88%), Positives = 137/142 (96%), Frame = +1

Query:   112 AAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFA 291
             AA+E VQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KAFEP+LLLGR +FA
Sbjct:     2 AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 60

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 471
             GVDMRIRVKGGG+TSQIYAIRQSIAKALVAY+QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct:    61 GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 120

Query:   472 RRCEPKKFGGRGARARFQKSYR 537
             RRCEPKKFGGRGAR+RFQKSYR
Sbjct:   121 RRCEPKKFGGRGARSRFQKSYR 142


 >gi|6721162|gb|AAF26790.1|AC016829_14  (AC016829) putative 40S ribosomal protein
            S16 [Arabidopsis thaliana]
            Length = 146

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 636 (223.9 bits), Expect = 3.0e-61, P = 3.0e-61
 Identities = 122/145 (84%), Positives = 131/145 (90%), Frame = +1

Query:   103 AAPAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRH 282
             A   A E VQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK FEP+LLLG+H
Sbjct:     2 ATQPAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKH 61

Query:   283 RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 462
             RFAGVDMRIR  GGG+TS++YAIRQSIAKALVAYYQKYVDEQSKKEIKDIL+RYDRTLLV
Sbjct:    62 RFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLV 121

Query:   463 ADPRRCEPKKFGGRGARARFQKSYR 537
             ADPRRCE KKFGG GARARFQKSYR
Sbjct:   122 ADPRRCESKKFGGPGARARFQKSYR 146


 >gi|1172818|sp|P46294|RS16_ORYSA  40S RIBOSOMAL PROTEIN S16
            >gi|7440266|pir||T04083 probable ribosomal protein S16 - rice
            >gi|538428|gb|AAA33916.1| (L36313) ribosomal protein S16 [Oryza
            sativa] >gi|1096552|prf||2111468A ribosomal protein S16 [Oryza
            sativa]
            Length = 149

Frame  1 hits (HSPs):       ______________________________________________
Annotated Domains:           _____________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 17..43
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 60..95
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 123..149
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   17..149
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        17..148
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 77..95
__________________


  Plus Strand HSPs:

 Score = 602 (211.9 bits), Expect = 1.2e-57, P = 1.2e-57
 Identities = 115/137 (83%), Positives = 123/137 (89%), Frame = +1

Query:   127 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMR 306
             VQCFGRKK AVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR RF  +DMR
Sbjct:    13 VQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72

Query:   307 IRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 486
             IRV+GGG TSQIYAIRQ+IAKALVAYYQKYVDE SKKE+KDI  RYDRTLLVADPRRCEP
Sbjct:    73 IRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEP 132

Query:   487 KKFGGRGARARFQKSYR 537
             KKFGGR ARARFQKSYR
Sbjct:   133 KKFGGRRARARFQKSYR 149


 >gi|133808|sp|P16149|RS16_LUPPO  40S RIBOSOMAL PROTEIN S16 >gi|70921|pir||R3YL16
            ribosomal protein S16, cytosolic - large-leaved lupine
            >gi|19512|emb|CAA36068.1| (X51766) rps16 gene product (AA 1-145)
            [Lupinus polyphyllus]
            Length = 145

Frame  2 hits (HSPs):    _________                                        
Frame  1 hits (HSPs):            _________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 13..39
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 56..91
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 119..145
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   29..145
   PRODOM               PD069035: RS16_LUPPO                     1..27
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        29..144
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 73..91
__________________


  Plus Strand HSPs:

 Score = 575 (202.4 bits), Expect = 2.4e-57, Sum P(2) = 2.4e-57
 Identities = 113/117 (96%), Positives = 115/117 (98%), Frame = +1

Query:   187 GLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIA 366
             GLIKING PIELVEPEILRFKAFEPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIA
Sbjct:    29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIA 88

Query:   367 KALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 537
             KALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct:    89 KALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145

 Score = 42 (14.8 bits), Expect = 2.4e-57, Sum P(2) = 2.4e-57
 Identities = 11/24 (45%), Positives = 14/24 (58%), Frame = +2

Query:   113 QQSSKCSASGGRRRRWQ*PTASAA 184
             Q S+K + S  R+     PTASAA
Sbjct:     5 QHSNKSNVSAARKPLSPSPTASAA 28


 >gi|4506691  ref|NP_001011.1| ribosomal protein S16 [Homo sapiens] >gi|11426147
            ref|XP_009228.1| ribosomal protein S16 [Homo sapiens]
            >gi|133807|sp|P17008|RS16_HUMAN 40S RIBOSOMAL PROTEIN S16
            >gi|70918|pir||R3HU16 ribosomal protein S16, cytosolic - human
            >gi|70919|pir||R3RT16 ribosomal protein S16, cytosolic [validated]
            - rat >gi|57714|emb|CAA35662.1| (X17665) ribosomal protein S16 (AA
            1-146) [Rattus rattus] >gi|338447|gb|AAA60583.1| (M60854) RPS16
            [Homo sapiens]
            Length = 146

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 581 (204.5 bits), Expect = 2.0e-55, P = 2.0e-55
 Identities = 107/140 (76%), Positives = 125/140 (89%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGV
Sbjct:     7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RVKGGGH +QIYAIRQSI+KALVAYYQKYVDE SKKEIKDIL++YDRTLLVADPRR
Sbjct:    67 DIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 126

Query:   478 CEPKKFGGRGARARFQKSYR 537
             CE KKFGG GARAR+QKSYR
Sbjct:   127 CESKKFGGPGARARYQKSYR 146


 >gi|7291436|gb|AAF46862.1|  (AE003458) CG4046 gene product [Drosophila
            melanogaster]
            Length = 148

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 571 (201.0 bits), Expect = 2.3e-54, P = 2.3e-54
 Identities = 104/140 (74%), Positives = 125/140 (89%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQ FGRKKTA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +FAGV
Sbjct:     9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RV GGGH +QIYAIRQ+I+KALVA+YQKYVDE SKKEIKDILV+YDRTLLV DPRR
Sbjct:    69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128

Query:   478 CEPKKFGGRGARARFQKSYR 537
             CEPKKFGG GARAR+QKSYR
Sbjct:   129 CEPKKFGGPGARARYQKSYR 148


 >gi|7305445  ref|NP_038675.1| ribosomal protein S16 [Mus musculus]
            >gi|133810|sp|P14131|RS16_MOUSE 40S RIBOSOMAL PROTEIN S16
            >gi|200796|gb|AAA03646.1| (M11408) 16S ribosomal protein [Mus
            musculus]
            Length = 145

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 569 (200.3 bits), Expect = 3.8e-54, P = 3.8e-54
 Identities = 106/140 (75%), Positives = 125/140 (89%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQ FGRKKT +AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGV
Sbjct:     7 LQSVQVFGRKKT-LAVAHCKRGNGLIKVNGRPLEMIEPRALQYKLLEPVLLLGKERFAGV 65

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RVKGGGH +QIYAIRQSI+KALVAYYQKYVDE SKKEIKDIL++YDRTLLVADPRR
Sbjct:    66 DIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 125

Query:   478 CEPKKFGGRGARARFQKSYR 537
             CE KKFGG GARAR+QKSYR
Sbjct:   126 CESKKFGGPGARARYQKSYR 145


 >gi|70920|pir||R3MS16  ribosomal protein S16 - mouse
            Length = 145

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 562 (197.8 bits), Expect = 2.1e-53, P = 2.1e-53
 Identities = 104/140 (74%), Positives = 124/140 (88%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQ FGRK+T +AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGV
Sbjct:     7 LQSVQVFGRKET-LAVAHCKRGNGLIKVNGRPLEMIEPRALQYKVLEPVLLLGKERFAGV 65

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RVKGGGH +QIY IRQSI+KALVAYYQKYVDE SKKEIKDIL++YDRTLLVADPRR
Sbjct:    66 DIRVRVKGGGHVAQIYGIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRR 125

Query:   478 CEPKKFGGRGARARFQKSYR 537
             CE KKFGG GARAR+QKSYR
Sbjct:   126 CESKKFGGPGARARYQKSYR 145


 >gi|6094158|sp|O60144|RS16_SCHPO  40S RIBOSOMAL PROTEIN S16
            >gi|7489976|pir||T39778 40s ribosomal protein S16 [similarity] -
            fission yeast  (Schizosaccharomyces pombe)
            >gi|3006191|emb|CAA18411.1| (AL022304) 40s ribosomal protein s16.
            [Schizosaccharomyces pombe] >gi|6692011|emb|CAB65805.1| (AL136235)
            40s ribosomal protein S16B [Schizosaccharomyces pombe]
            Length = 140

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |                 |                 |              | 140
                       0                50               100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   8..140
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        8..139
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 68..86
__________________


  Plus Strand HSPs:

 Score = 530 (186.6 bits), Expect = 5.2e-50, P = 5.2e-50
 Identities = 98/140 (70%), Positives = 117/140 (83%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQCFG+K  A AV +CK G+GLIK+NG P+ LV+PEILR K +EPIL+ G  +FAGV
Sbjct:     1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RV GGGH SQIYAIRQ+I+KA+VAYYQK+VDE SK E+K  L+ YDRTLLVADPRR
Sbjct:    61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query:   478 CEPKKFGGRGARARFQKSYR 537
              EPKKFGG GARAR QKSYR
Sbjct:   121 MEPKKFGGHGARARQQKSYR 140


 >gi|11276570|pir||T43419  ribosomal protein S16 - fission yeast
            (Schizosaccharomyces pombe) (fragment) >gi|3628750|dbj|BAA33368.1|
            (AB017604) ribosomal protein S16 homolog [Schizosaccharomyces
            pombe]
            Length = 138

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 527 (185.5 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 98/137 (71%), Positives = 115/137 (83%), Frame = +1

Query:   127 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMR 306
             VQCFG+K  A AV +CK G+GLIK+NG P+ LV+PEILR K +EPIL+ G  +FAGVD+R
Sbjct:     2 VQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIR 61

Query:   307 IRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 486
             +RV GGGH SQIYAIRQ+I+KA+VAYYQK+VDE SK E+K  L+ YDRTLLVADPRR EP
Sbjct:    62 VRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEP 121

Query:   487 KKFGGRGARARFQKSYR 537
             KKFGG GARAR QKSYR
Sbjct:   122 KKFGGHGARARQQKSYR 138


 >gi|2500429|sp|Q22054|RS16_CAEEL  PROBABLE 40S RIBOSOMAL PROTEIN S16
            >gi|7506839|pir||T24280 hypothetical protein T01C3.6 -
            Caenorhabditis elegans >gi|3879245|emb|CAB01658.1| (Z78413)
            predicted using Genefinder~Similarity to Human 40S ribosomal
            protein S16 (SW:RS16_HUMAN), contains similarity to Pfam domain:
            PF00380 (Ribosomal protein S9/S16), Score=249.9, E-value=1.3e-77,
            N=1~cDNA EST yk636f8.3 comes from this gene; cDNA E>
            Length = 144

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:         _______________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL00360A: Ribosomal protein S9 proteins. 12..38
   BLOCKS               BL00360B: Ribosomal protein S9 proteins. 55..90
   BLOCKS               BL00360C: Ribosomal protein S9 proteins. 118..144
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   12..144
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        12..143
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 72..90
__________________


  Plus Strand HSPs:

 Score = 522 (183.8 bits), Expect = 3.6e-49, P = 3.6e-49
 Identities = 96/142 (67%), Positives = 120/142 (84%), Frame = +1

Query:   112 AAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFA 291
             + ++ VQ FGRKKTA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF 
Sbjct:     3 STVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQ 62

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 471
              VD+RIRV GGGH +QIYA+RQ++AKALVAYY KYVDEQSK+E+K+I   YD++LLVADP
Sbjct:    63 DVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADP 122

Query:   472 RRCEPKKFGGRGARARFQKSYR 537
             RR E KKFGG GARAR+QKSYR
Sbjct:   123 RRRESKKFGGPGARARYQKSYR 144


 >gi|2500428|sp|Q29201|RS16_PIG  40S RIBOSOMAL PROTEIN S16
            Length = 136

Frame  1 hits (HSPs):     ________________________________________________
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   13..135
__________________


  Plus Strand HSPs:

 Score = 521 (183.4 bits), Expect = 4.6e-49, P = 4.6e-49
 Identities = 96/130 (73%), Positives = 112/130 (86%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
             ++ VQ FGRKKTA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RFAGV
Sbjct:     7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66

Query:   298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
             D+R+RVKGGGH +QIYAIRQSI KALVAYYQKYVDE SKK IKDIL++YDRTLLVADP R
Sbjct:    67 DIRVRVKGGGHVAQIYAIRQSIXKALVAYYQKYVDEASKKXIKDILIQYDRTLLVADPXR 126

Query:   478 CEPKKFGGRG 507
             CE KKFGG G
Sbjct:   127 CESKKFGGPG 136


 >gi|6320120  ref|NP_010200.1| Ribosomal protein S16B (rp61R); Rps16bp
            [Saccharomyces cerevisiae] >gi|9755341 ref|NP_013863.2| Ribosomal
            protein S16A (rp61R); Rps16ap [Saccharomyces cerevisiae]
            >gi|730464|sp|P40213|RS16_YEAST 40S RIBOSOMAL PROTEIN S16 (RP61R)
            >gi|2119075|pir||S67619 ribosomal protein S16.e, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|606441|emb|CAA87357.1| (Z47071)
            putative ribosomal protein [Saccharomyces cerevisiae]
            >gi|1431106|emb|CAA98649.1| (Z74131) ORF YDL083c [Saccharomyces
            cerevisiae]
            Length = 143

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100

  Plus Strand HSPs:

 Score = 519 (182.7 bits), Expect = 7.5e-49, P = 7.5e-49
 Identities = 96/142 (67%), Positives = 118/142 (83%), Frame = +1

Query:   112 AAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFA 291
             +A+  VQ FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F+
Sbjct:     2 SAVPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFS 61

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 471
              +D+R+RV GGGH SQ+YAIRQ+IAK LVAY+QKYVDEQSK E+K     YDRTLL+AD 
Sbjct:    62 NIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADS 121

Query:   472 RRCEPKKFGGRGARARFQKSYR 537
             RR EPKKFGG+GAR+RFQKSYR
Sbjct:   122 RRPEPKKFGGKGARSRFQKSYR 143


 >gi|10720257|sp|O94017|RS16_CANAL  40S RIBOSOMAL PROTEIN S16
            >gi|3859690|emb|CAA21965.1| (AL033497) 40S ribosomal protein rps16
            [Candida albicans]
            Length = 142

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 517 (182.0 bits), Expect = 1.2e-48, P = 1.2e-48
 Identities = 97/139 (69%), Positives = 115/139 (82%), Frame = +1

Query:   121 EQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVD 300
             + VQ FG+KKTA AV + K G+GLIKING PI LV+PEILRFK +EP+ L+G  +F G+D
Sbjct:     4 QSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGID 63

Query:   301 MRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 480
             +R++V GGGH SQ+YAIRQ+IAK LVAY+QKYVDE SK E+K I   YD+TLLVAD RR 
Sbjct:    64 IRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRM 123

Query:   481 EPKKFGGRGARARFQKSYR 537
             EPKKFGGRGARARFQKSYR
Sbjct:   124 EPKKFGGRGARARFQKSYR 142


 >gi|2119074|pir||S69289  ribosomal protein S16.e.A - yeast (Saccharomyces
            cerevisiae)
            Length = 143

Frame  1 hits (HSPs):      _______________________________________________
Annotated Domains:                              _______                   
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 71..89
__________________


  Plus Strand HSPs:

 Score = 504 (177.4 bits), Expect = 2.9e-47, P = 2.9e-47
 Identities = 93/134 (69%), Positives = 113/134 (84%), Frame = +1

Query:   136 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             FG+KK+A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F+ +D+R+RV
Sbjct:    10 FGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRV 69

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
              GGGH SQ+YAIRQ+IAK LVAY+QKYVDEQSK E+K     YDRTLL+AD RR EPKKF
Sbjct:    70 TGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKF 129

Query:   496 GGRGARARFQKSYR 537
             GG+GAR+RFQKSYR
Sbjct:   130 GGKGARSRFQKSYR 143


 >gi|7388076|sp|O26146|RLSX_METTH  FUSED L13/S9 RIBOSOMAL PROTEIN [INCLUDES: 50S
            RIBOSOMAL PROTEIN L13P; 30S RIBOSOMAL PROTEIN S9P]
            >gi|7482818|pir||E69150 ribosomal protein S9 - Methanobacterium
            thermoautotrophicum  (strain Delta H) >gi|2621075|gb|AAB84547.1|
            (AE000796) ribosomal protein S16 (E.coli S9) [Methanothermobacter
            thermautotrophicus]
            Length = 282

Frame  1 hits (HSPs):                              _______________________
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 282
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 295 (103.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 65/133 (48%), Positives = 84/133 (63%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G++KTA+A    + G+G ++IN  P+EL  PE+ R K  EP+ L G      VD+ +RV 
Sbjct:   158 GKRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVV 216

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 498
             GGG   Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+G
Sbjct:   217 GGGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYG 269

Query:   499 GRGARARFQKSYR 537
             GRGARAR QKSYR
Sbjct:   270 GRGARARRQKSYR 282


 >gi|6647789|sp|O59299|RS9_PYRHO  30S RIBOSOMAL PROTEIN S9P
            >gi|7440267|pir||A71043 probable ribosomal protein S9 - Pyrococcus
            horikoshii >gi|3258062|dbj|BAA30745.1| (AP000006) 135aa long
            hypothetical 30S ribosomal protein S9 [Pyrococcus horikoshii]
            Length = 135

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 60/137 (43%), Positives = 87/137 (63%), Frame = +1

Query:   127 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMR 306
             +Q  G++KTA+A    + GRG ++ING P+E++EPEI RF   EP++L G   +  VD+ 
Sbjct:     4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDID 63

Query:   307 IRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 486
             ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP
Sbjct:    64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116

Query:   487 KK--FGGRGARARFQKSYR 537
              K     +G RA+ QKSYR
Sbjct:   117 HKPNRSTKGPRAKRQKSYR 135


 >gi|7440283|pir||H75171  ssu ribosomal protein s9p (rps9p) PAB0366 - Pyrococcus
            abyssi (strain Orsay) >gi|5457965|emb|CAB49455.1| (AJ248284) SSU
            ribosomal protein S9P (rps9P) [Pyrococcus abyssi]
            Length = 135

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 61/137 (44%), Positives = 87/137 (63%), Frame = +1

Query:   127 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMR 306
             +Q  G++KTA+A    + G+G ++ING P+ELVEPEI RF   EP++L G   +  VD+ 
Sbjct:     4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDID 63

Query:   307 IRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 486
             ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP
Sbjct:    64 VKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEP 116

Query:   487 KK--FGGRGARARFQKSYR 537
              K     +G RA+ QKSYR
Sbjct:   117 HKPNRSTKGPRAKRQKSYR 135


 >gi|10639602|emb|CAC11574.1|  (AL445064) probable 30S ribosomal protein S9
            [Thermoplasma acidophilum]
            Length = 129

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100

  Plus Strand HSPs:

 Score = 274 (96.5 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 61/133 (45%), Positives = 89/133 (66%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G++KTAVA    K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+
Sbjct:     5 GKRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVR 63

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 498
             GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTL+V D R   PKK G
Sbjct:    64 GGGVTGQADASRTAIARAIV----KYLNDT---ELENLFRQYDRTLIVNDVRIKLPKKAG 116

Query:   499 GRGARARFQKSYR 537
             GRGARA+ QKSYR
Sbjct:   117 GRGARAKKQKSYR 129


 >gi|134032|sp|P05763|RS9_HALMA  30S RIBOSOMAL PROTEIN S9P (HMAS9) (HS3) (F1)
            >gi|99181|pir||C41715 ribosomal protein S9 - Haloarcula marismortui
            >gi|11383496|pir||R3HS3 ribosomal protein S9 [validated] -
            Haloarcula marismortui >gi|148778|gb|AAA73098.1| (M76567) ribosomal
            protein [Haloarcula marismortui]
            Length = 132

Frame  1 hits (HSPs):     ________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 132
                       0                 50                100
__________________

Annotated Domains:
   DOMO                 DM00779: RIBOSOMALPROTEINS9              1..130
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   6..131
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        6..130
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 67..85
__________________


  Plus Strand HSPs:

 Score = 267 (94.0 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 58/133 (43%), Positives = 82/133 (61%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G+KKTAVA    + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+
Sbjct:     7 GKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVE 66

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 498
             GGG   Q  A R +IA+ LV       D  +  E++D  + +DR+LLV D R+ EPKK+G
Sbjct:    67 GGGVMGQADAARTAIARGLV-------DHTNDAELRDAFMEFDRSLLVNDVRQSEPKKWG 119

Query:   499 GRGARARFQKSYR 537
             G GARAR+QKSYR
Sbjct:   120 GPGARARYQKSYR 132


 >gi|1710779|sp|P54024|RS9_METJA  30S RIBOSOMAL PROTEIN S9P
            >gi|2129275|pir||D64324 ribosomal protein S9 - Methanococcus
            jannaschii >gi|1590940|gb|AAB98175.1| (U67475) SSU ribosomal
            protein S9P (rpsI) [Methanococcus jannaschii]
            Length = 136

Frame  1 hits (HSPs):     ________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   DOMO                 DM00779: RIBOSOMALPROTEINS9              1..135
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   9..136
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        9..135
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 69..87
__________________


  Plus Strand HSPs:

 Score = 264 (92.9 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 60/133 (45%), Positives = 82/133 (61%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G++K A+A    + G+G I+IN  PIEL+EP+  R K  EPILL G    + +D+ + VK
Sbjct:     9 GKRKRAIARAVAREGKGRIRINKIPIELIEPKYKRMKLMEPILLAGEEVISQMDIDVTVK 68

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK-- 492
             GGG   Q+ A R +I KA+V +          KE++D  + YDRTLLV+D RR EP K  
Sbjct:    69 GGGVMGQMDAARTAIGKAIVEF-------TGSKELRDKFLAYDRTLLVSDARRTEPHKPS 121

Query:   493 FGGRGARARFQKSYR 537
                +G RA+ QKSYR
Sbjct:   122 RSTKGPRAKRQKSYR 136


 >gi|6685936|sp|Q9YB48|RS9_AERPE  30S RIBOSOMAL PROTEIN S9P
            >gi|7440282|pir||A72558 probable ribosomal protein S9 APE1749 -
            Aeropyrum pernix  (strain K1) >gi|5105437|dbj|BAA80750.1|
            (AP000062) 157aa long hypothetical 30S ribosomal protein S9
            [Aeropyrum pernix]
            Length = 157

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 260 (91.5 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 58/150 (38%), Positives = 93/150 (62%), Frame = +1

Query:   115 AIEQVQCF-GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFA 291
             A+E++    G++K A+A    + GRG + ING P+E+   E+ R K  EP+L+ G    +
Sbjct:     8 AVERIVISTGKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRS 67

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYY--QKYVDEQSK------KEIKDILVRYD 447
              VD+R+RV+GGG   Q  A+R +IA+ LV ++  ++  DE  +      ++++   + +D
Sbjct:    68 LVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKISRDLRTAFLEHD 127

Query:   448 RTLLVADPRRCEPKKFGGRGARARFQKSYR 537
             RT+LV DPRR EP+K+    AR R+QKSYR
Sbjct:   128 RTMLVGDPRRTEPEKYMRYSARRRWQKSYR 157


 >gi|224156|prf||1011219A  protein HS3 [Haloarcula marismortui]
            Length = 130

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100

  Plus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 57/133 (42%), Positives = 82/133 (61%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G+KKTAVA    + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+
Sbjct:     6 GKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVE 65

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 498
             GGG   Q  A R +IA+ LV       D  +  +++D  + +DR+LLV D R+ EPKK+G
Sbjct:    66 GGGVMGQADA-RTAIARGLV-------DHTNDAQLRDAFMEFDRSLLVNDVRQSEPKKWG 117

Query:   499 GRGARARFQKSYR 537
             G GARAR+QKSYR
Sbjct:   118 GPGARARYQKSYR 130


 >gi|11498729  ref|NP_069958.1| SSU ribosomal protein S9P (rps9P) [Archaeoglobus
            fulgidus] >gi|3914921|sp|O29136|RS9_ARCFU 30S RIBOSOMAL PROTEIN S9P
            >gi|7440268|pir||H69390 SSU ribosomal protein S9P (rps9P) homolog -
            Archaeoglobus fulgidus >gi|2649458|gb|AAB90113.1| (AE001026) SSU
            ribosomal protein S9P (rps9P) [Archaeoglobus fulgidus]
            Length = 135

Frame  1 hits (HSPs):      _______________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 249 (87.7 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 58/133 (43%), Positives = 81/133 (60%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVK 318
             G++KTA A    K G+G ++IN  P+E+ +PE+ R K  EP L++ +     VD+ ++  
Sbjct:    11 GKRKTATARAVIKPGKGRVRINSVPVEIHQPELARMKIMEP-LIIAKELAEKVDIEVKTW 69

Query:   319 GGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 498
             GGG  +Q  A R +IA+AL+ +     DE    E++   + YDRTLLV D RR  PK  G
Sbjct:    70 GGGFMAQAEAARTAIARALLEFSG---DE----ELRKAFLEYDRTLLVNDVRRKLPKIQG 122

Query:   499 GRGARARFQKSYR 537
             GRGARAR Q SYR
Sbjct:   123 GRGARARRQTSYR 135


 >gi|9827792|emb|CAB97881.1|  (AL160493) probable 40s ribosomal protein s16
            [Leishmania major]
            Length = 111

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 111
                       0                     50                   100

  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 46/109 (42%), Positives = 66/109 (60%), Frame = +1

Query:   208 CPIELVEPEILRFKAF-EPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAY 384
             C    + P+ LR K    P  ++G   ++ + + + V GGG  SQ YA R++IAK L+A+
Sbjct:     3 CRCSXILPDTLRAKIMXRPXTVVGSKYYSRLRIDVAVHGGGQVSQAYAARRAIAKGLIAF 62

Query:   385 YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKS 531
             +QKY +E  K  +KD  + YD+   +ADPRRCE KK+G   AR RF KS
Sbjct:    63 FQKYHNEVEKPALKDKFLAYDKFXFIADPRRCERKKWGRHSARTRFTKS 111


 >gi|2500427|sp|P95992|RS9_SULSO  30S RIBOSOMAL PROTEIN S9P
            >gi|7440286|pir||S75420 probable ribosomal protein S9 - Sulfolobus
            solfataricus >gi|1707826|emb|CAA69534.1| (Y08257) ribosomal protein
            S9/S16 [Sulfolobus solfataricus] >gi|12311914|emb|CAC22779.1|
            (AL512962) 30S/40S ribosomal protein S9/S16 [Sulfolobus
            solfataricus]
            Length = 140

Frame  1 hits (HSPs):        _____________________________________________
Annotated Domains:           _____________________________________________
                        __________________________________________________
Database sequence:     |                 |                 |              | 140
                       0                50               100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   15..140
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        16..139
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 75..93
__________________


  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 53/132 (40%), Positives = 74/132 (56%), Frame = +1

Query:   142 RKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKG 321
             R+KTA A  Y   G+G + +N  PIEL+  E++R K  EP+LL G    + +D +I   G
Sbjct:    16 RRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYG 75

Query:   322 GGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGG 501
             GG   Q  A R ++A+ALV +          KE++ I   YDRT+L  DPR+ E +K+  
Sbjct:    76 GGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAGDPRQTESEKWMR 128

Query:   502 RGARARFQKSYR 537
               AR   QKSYR
Sbjct:   129 YSARRWRQKSYR 140


 >gi|730675|sp|P39468|RS9_SULAC  30S RIBOSOMAL PROTEIN S9P >gi|629416|pir||S47026
            ribosomal protein S9 - Sulfolobus acidocaldarius
            >gi|517293|emb|CAA56483.1| (X80194) ribosomal protein S9
            [Sulfolobus acidocaldarius]
            Length = 130

Frame  1 hits (HSPs):    _________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100
__________________

Annotated Domains:
   DOMO                 DM00779: RIBOSOMALPROTEINS9              1..129
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   5..130
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        6..129
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 65..83
__________________


  Plus Strand HSPs:

 Score = 205 (72.2 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 48/134 (35%), Positives = 75/134 (55%), Frame = +1

Query:   136 FGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             + R+ +A A  Y K G G + +N  PIE++  E++R+K  EP++L      + ++ RI  
Sbjct:     4 YARRSSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAVDKITSSIEARIYT 63

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
             +GGG   Q  A R + A+ALV +        + KE+ +I   YDRT+L  DPR+ E +K+
Sbjct:    64 QGGGIMGQADAARMAHARALVKF-------TNSKELVEIYKSYDRTMLAGDPRQTESEKW 116

Query:   496 GGRGARARFQKSYR 537
                 AR   QK+YR
Sbjct:   117 MRYSARRWRQKAYR 130


 >gi|10580677|gb|AAG19523.1|  (AE005043) 30S ribosomal protein S9P; Rps9p
            [Halobacterium sp. NRC-1]
            Length = 94

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 94
                       0         20        40         60         80

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 44/99 (44%), Positives = 57/99 (57%), Frame = +1

Query:   241 RFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKE 420
             R K  EP  + G      VD+ I V GGG   Q  A+R +IA+ LV +Y          E
Sbjct:     3 RLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAE 55

Query:   421 IKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 537
             ++D    +DR+LLV D R+ E KK+GG GARAR+QKSYR
Sbjct:    56 LRDAFREFDRSLLVNDVRQRESKKWGGPGARARYQKSYR 94


 >gi|11276572|pir||H81705  ribosomal protein S9 TC0402 [imported] - Chlamydia
            muridarum (strain Nigg) >gi|7190444|gb|AAF39259.1| (AE002307)
            ribosomal protein S9 [Chlamydia muridarum]
            Length = 133

Frame  1 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 133
                       0                 50                100

  Plus Strand HSPs:

 Score = 160 (56.3 bits), Expect = 8.3e-11, P = 8.3e-11
 Identities = 49/140 (35%), Positives = 72/140 (51%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFAG 294
             I++    GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG      
Sbjct:     6 IQESVATGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLKMLGDVN--S 63

Query:   295 VDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 474
              D+ IRV GGG   Q+ A R  +A+A++   +K   E  K+E+K       +  L  DPR
Sbjct:    64 FDLIIRVSGGGVQGQVIATRLGLARAVLQ--EK---EDMKQELKS------QGFLTRDPR 112

Query:   475 RCEPKKFGGRGARARFQKSYR 537
             + E KK+G + AR  FQ S R
Sbjct:   113 KKERKKYGRKKARKSFQFSKR 133


 >gi|7388227|sp|O84128|RS9_CHLTR  30S RIBOSOMAL PROTEIN S9
            >gi|7440276|pir||B71554 probable S9 ribosomal protein - Chlamydia
            trachomatis  (serotype D, strain UW3/Cx) >gi|3328525|gb|AAC67717.1|
            (AE001286) S9 Ribosomal Protein [Chlamydia trachomatis]
            Length = 129

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100

  Plus Strand HSPs:

 Score = 158 (55.6 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 49/140 (35%), Positives = 72/140 (51%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFAG 294
             I++    GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG      
Sbjct:     2 IQESVATGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGDVN--S 59

Query:   295 VDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 474
              D+ IRV GGG   Q+ A R  +A+A++   +K   E  K+E+K       +  L  DPR
Sbjct:    60 FDLIIRVSGGGVQGQVIATRLGLARAVLQ--EK---EDMKQELKA------QGFLTRDPR 108

Query:   475 RCEPKKFGGRGARARFQKSYR 537
             + E KK+G + AR  FQ S R
Sbjct:   109 KKERKKYGRKKARKSFQFSKR 129


 >gi|3914923|sp|O51313|RS9_BORBU  30S RIBOSOMAL PROTEIN S9
            >gi|7440274|pir||A70142 ribosomal protein S9 (rpsI) - Lyme disease
            spirochete >gi|2688239|gb|AAC66718.1| (AE001140) ribosomal protein
            S9 (rpsI) [Borrelia burgdorferi]
            Length = 136

Frame  1 hits (HSPs):        _____________________________________________
Annotated Domains:           _____________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   16..136
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        16..135
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 75..93
__________________


  Plus Strand HSPs:

 Score = 155 (54.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 48/133 (36%), Positives = 70/133 (52%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             GR+K++VA  Y + G G IK+N    +  ++ E LR  A  P++L   +     D+ I V
Sbjct:    16 GRRKSSVARVYIREGSGNIKVNNRDFDSYIQLENLRTMALSPLVLT--NTLGKYDLYINV 73

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
              GGG + Q  AIR  I++AL       +DE +K     +++R     L  D R+ E KKF
Sbjct:    74 YGGGISGQSGAIRHGISRALFK-----LDESNK-----MILR-SNGFLTRDSRKVERKKF 122

Query:   496 GGRGARARFQKSYR 537
             G + AR  FQ S R
Sbjct:   123 GQKKARKSFQFSKR 136


 >gi|7388236|sp|Q9X1G4|RS9_THEMA  30S RIBOSOMAL PROTEIN S9
            >gi|7440280|pir||F72250 ribosomal protein S9 - Thermotoga maritima
            (strain MSB8) >gi|4982018|gb|AAD36521.1|AE001797_1 (AE001797)
            ribosomal protein S9 [Thermotoga maritima]
            Length = 134

Frame  1 hits (HSPs):      _______________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 134
                       0                 50               100

  Plus Strand HSPs:

 Score = 151 (53.2 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 49/133 (36%), Positives = 70/133 (52%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVE-----PEILRFKAFEPILLLGRHRFAGVDM 303
             GR+KTAVA  Y + G G +K+NG   E +      P   +  A EP+ +   +     D+
Sbjct:    11 GRRKTAVARVYLRPGEGKVKVNGKEYESLNDYFKNPAWTKH-AIEPLEVT--NTLGKFDL 67

Query:   304 RIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCE 483
              IRV GGG + Q  A+R  IA+AL+ Y Q          ++ +L +Y   +L  DPR  E
Sbjct:    68 VIRVNGGGLSGQSGAVRLGIARALLQYDQN---------LRPVLKKYK--MLTRDPREVE 116

Query:   484 PKKFGGRGARARFQKSYR 537
              KK+G + AR   Q S R
Sbjct:   117 RKKYGLKKARRAPQFSKR 134


 >gi|7388228|sp|Q9Z8T8|RS9_CHLPN  30S RIBOSOMAL PROTEIN S9
            >gi|7440279|pir||B72101 ribosomal protein S9 CP0516 [imported] -
            Chlamydophila pneumoniae (strains CWL029 and AR39)
            >gi|4376521|gb|AAD18399.1| (AE001610) S9 Ribosomal Protein
            [Chlamydophila pneumoniae CWL029] >gi|7189433|gb|AAF38343.1|
            (AE002211) ribosomal protein S9 [Chlamydophila pneumoniae AR39]
            >gi|8978619|dbj|BAA98456.1| (AP002545) S9 ribosomal protein
            [Chlamydophila pneumoniae J138]
            Length = 134

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 134
                       0                 50               100

  Plus Strand HSPs:

 Score = 150 (52.8 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 47/144 (32%), Positives = 73/144 (50%), Frame = +1

Query:   106 APAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRH 282
             A + I++    GR+K AV+    + G G I +NG   E   P EI R     P+  +   
Sbjct:     2 AKSTIQESVATGRRKQAVSSVRLRPGSGKIDVNGKSFEDYFPLEIQRTTILSPLKKITED 61

Query:   283 RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 462
             + +  D+ IRV GGG   Q+ A R  +A+AL+       +E++++++K          L 
Sbjct:    62 Q-SQYDLIIRVSGGGIQGQVIATRLGLARALLKE-----NEENRQDLKSC------GFLT 109

Query:   463 ADPRRCEPKKFGGRGARARFQKSYR 537
              DPR+ E KK+G + AR  FQ S R
Sbjct:   110 RDPRKKERKKYGHKKARKSFQFSKR 134


 >gi|11276573|pir||D81294  30S ribosomal protein S9 Cj1479c [imported] -
            Campylobacter jejuni (strain NCTC 11168)
            >gi|6968905|emb|CAB73901.1| (AL139078) 30S ribosomal protein S9
            [Campylobacter jejuni]
            Length = 129

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100

  Plus Strand HSPs:

 Score = 144 (50.7 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 43/133 (32%), Positives = 69/133 (51%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIE--LVEPEILRFKAFEPILLLGRHRFAGVDMRIR 312
             G++KTA+A  + K G G I +NG  +   L   E ++ K  +P+L+  +     +D++  
Sbjct:     8 GKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLVTKQE--TSMDIKAT 65

Query:   313 VKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 492
               GGG+++Q  A+R  I++AL A     +D   +  +K       + LL  D R  E KK
Sbjct:    66 TLGGGYSAQAEALRHGISRALAA-----MDADFRALLKP------KGLLTRDSRTVERKK 114

Query:   493 FGGRGARARFQKSYR 537
             +G R AR   Q S R
Sbjct:   115 YGRRKARRSPQFSKR 129


 >gi|2500422|sp|P56016|RS9_HELPY  30S RIBOSOMAL PROTEIN S9
            >gi|7440273|pir||C64530 ribosomal protein S9 - Helicobacter pylori
            >gi|2313164|gb|AAD07153.1| (AE000530) ribosomal protein S9 (rps9)
            [Helicobacter pylori 26695] >gi|4154586|gb|AAD05660.1| (AE001447)
            30S RIBOSOMAL PROTEIN S9 [Helicobacter pylori J99]
            Length = 129

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   8..129
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        8..128
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 68..86
__________________


  Plus Strand HSPs:

 Score = 141 (49.6 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 46/140 (32%), Positives = 73/140 (52%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIE--LVEPEILRFKAFEPILLLGRHRFA 291
             + ++   G++KTA+A  +   G+G + IN   +   L   E ++ K  +P+LL  + +  
Sbjct:     1 MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQ-- 58

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 471
              VD++  V GGG+++Q  A+R  I+KAL AY     D   +  +K       + LL  D 
Sbjct:    59 SVDIKAVVFGGGYSAQAEALRHGISKALNAY-----DIAFRAILKP------KGLLTRDS 107

Query:   472 RRCEPKKFGGRGARARFQKSYR 537
             R  E KK+G R AR   Q S R
Sbjct:   108 RVVERKKYGKRKARRSPQFSKR 129


 >gi|10835571|pdb|1FJF|I  Chain I, Structure Of The Thermus Thermophilus 30s
            Ribosomal Subunit >gi|10835593|pdb|1FJG|I Chain I, Structure Of The
            Thermus Thermophilus 30s Ribosomal Subunit In Complex With The
            Antibiotics Streptomycin, Spectinomycin And Paromomycin
            Length = 128

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 128
                       0                  50                100

  Plus Strand HSPs:

 Score = 132 (46.5 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 48/140 (34%), Positives = 67/140 (47%), Frame = +1

Query:   118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGR-HRFA 291
             +EQ    GR+K AVA  + + G G + +NG    E  +  +    A EP+  +    RF 
Sbjct:     1 MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRF- 59

Query:   292 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 471
               D  I V+GGG + QI AI+  IA+ALV Y   Y     + ++K +        L  D 
Sbjct:    60 --DAYITVRGGGKSGQIDAIKLGIARALVQYNPDY-----RAKLKPL------GFLTRDA 106

Query:   472 RRCEPKKFGGRGARARFQKSYR 537
             R  E KK+G   AR   Q S R
Sbjct:   107 RVVERKKYGKHKARRAPQYSKR 128


 >gi|11276569|pir||E82669  30S ribosomal protein S9 XF1536 [imported] - Xylella
            fastidiosa (strain 9a5c) >gi|9106574|gb|AAF84345.1|AE003983_7
            (AE003983) 30S ribosomal protein S9 [Xylella fastidiosa]
            Length = 130

Frame  1 hits (HSPs):      _______________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100

  Plus Strand HSPs:

 Score = 130 (45.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 46/133 (34%), Positives = 61/133 (45%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             GR+K++ A  + ++G G I +NG P+ E    E  R    +P+ L      A  D+ I  
Sbjct:    10 GRRKSSKARIFLRKGSGNITVNGRPLDEFFGRETARMIVRQPLELT--KNVANFDILITA 67

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
              GGG T Q  AIR  IA+ALV Y     D   K E++          +  D R  E KK 
Sbjct:    68 TGGGTTGQAGAIRLGIARALVEY-----DASLKPELRKA------GFMTRDAREVERKKV 116

Query:   496 GGRGARARFQKSYR 537
             G   AR   Q S R
Sbjct:   117 GLHKARRATQFSKR 130


 >gi|6094200|sp|O83987|RS9_TREPA  30S RIBOSOMAL PROTEIN S9
            >gi|7440270|pir||C71251 probable ribosomal protein S9 (rpsI) -
            syphilis spirochete >gi|3323359|gb|AAC65981.1| (AE001270) ribosomal
            protein S9 (rpsI) [Treponema pallidum]
            Length = 129

Frame  1 hits (HSPs):      _______________________________________________
Annotated Domains:         _______________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100
__________________

Annotated Domains:
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   9..129
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        9..128
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 68..86
__________________


  Plus Strand HSPs:

 Score = 129 (45.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 47/133 (35%), Positives = 62/133 (46%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP--EILRFKAFEPILLLGRHRFAGVDMRIR 312
             GR+KTAVA    + G G + +N   +    P  E LR +  EP+      R    D+ + 
Sbjct:     9 GRRKTAVARVCIRMGNGNVTVNRRDVGAYFPTAEQLR-RVREPLFATANER--RYDVIVN 65

Query:   313 VKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK 492
             V GGG   Q  A    IA+ALV       D  ++  ++         LL  D R  E KK
Sbjct:    66 VYGGGLDGQAGACAHGIARALVR-----ADASNQASLRA------GGLLTRDSRMVERKK 114

Query:   493 FGGRGARARFQKSYR 537
             +G RGAR RFQ S R
Sbjct:   115 YGQRGARRRFQFSKR 129


 >gi|134031|sp|P02363|RS9_ECOLI  30S RIBOSOMAL PROTEIN S9 >gi|7428662|pir||R3EC9
            ribosomal protein S9 [validated] - Escherichia coli
            >gi|535073|emb|CAA26042.1| (X02130) S9 (rpsI) (1-130) [Escherichia
            coli] >gi|606169|gb|AAA58032.1| (U18997) 30S ribosomal subunit
            protein S9 [Escherichia coli] >gi|1789625|gb|AAC76262.1| (AE000402)
            30S ribosomal subunit protein S9 [Escherichia coli K12]
            >gi|12517851|gb|AAG58358.1|AE005551_1 (AE005551) 30S ribosomal
            subunit protein S9 [Escherichia coli O157:H7]
            Length = 130

Frame  1 hits (HSPs):      _______________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100
__________________

Annotated Domains:
   DOMO                 DM00779: RIBOSOMALPROTEINS9              1..128
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   9..129
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        9..128
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 69..87
__________________


  Plus Strand HSPs:

 Score = 128 (45.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 46/133 (34%), Positives = 64/133 (48%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             GR+K++ A  + K G G I IN   +E     E  R    +P+ L+       +D+ I V
Sbjct:    10 GRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDM--VEKLDLYITV 67

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
             KGGG + Q  AIR  I +AL+ Y     DE  + E++          +  D R+ E KK 
Sbjct:    68 KGGGISGQAGAIRHGITRALMEY-----DESLRSELRKA------GFVTRDARQVERKKV 116

Query:   496 GGRGARARFQKSYR 537
             G R AR R Q S R
Sbjct:   117 GLRKARRRPQFSKR 130


 >gi|10172781|dbj|BAB03888.1|  (AP001507) 30S ribosomal protein S9 [Bacillus
            halodurans]
            Length = 130

Frame  1 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100

  Plus Strand HSPs:

 Score = 125 (44.0 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 49/138 (35%), Positives = 66/138 (47%), Frame = +1

Query:   124 QVQCFG--RKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFAG 294
             QVQ +G  R+K +VA      G G I ING  + E    E L+    +P++  G      
Sbjct:     3 QVQYYGTGRRKHSVARVRLVPGDGNIVINGRSLDEYFGLETLKLIVKQPLVETGTE--GQ 60

Query:   295 VDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 474
              D+R+ V GGG T Q  AIR  IA+AL+      VD + +  +K          L  D R
Sbjct:    61 YDVRVNVDGGGFTGQAGAIRHGIARALLQ-----VDPEYRPSLKSA------GFLTRDAR 109

Query:   475 RCEPKKFGGRGARARFQKSYR 537
               E KK+G + AR   Q S R
Sbjct:   110 MKERKKYGLKAARRAPQFSKR 130


 >gi|11276574|pir||A81012  30S ribosomal protein S9 NMB2056 [imported] -
            Neisseria meningitidis (group B strain MD58, group A strain Z2491)
            >gi|7227318|gb|AAF42376.1| (AE002555) 30S ribosomal protein S9
            [Neisseria meningitidis MC58] >gi|7379132|emb|CAB83680.1|
            (AL162753) 30S ribosomal protein S9 [Neisseria meningitidis Z2491]
            Length = 130

Frame  1 hits (HSPs):      _______________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100

  Plus Strand HSPs:

 Score = 124 (43.7 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 43/133 (32%), Positives = 61/133 (45%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             GR+K++VA  +  +G G I +NG P+ E    E  R    +P++L         D+++ V
Sbjct:    10 GRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETSRMVVRQPLVLT--ENAESFDIKVNV 67

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
              GGG T Q  AIR  I +AL+ +     D   K  +           +  D R  E KK 
Sbjct:    68 VGGGETGQSGAIRHGITRALIDF-----DAALKPALSQA------GFVTRDAREVERKKP 116

Query:   496 GGRGARARFQKSYR 537
             G R AR   Q S R
Sbjct:   117 GLRKARRAKQFSKR 130


 >gi|134028|sp|P07842|RS9_BACST  30S RIBOSOMAL PROTEIN S9 (BS10)
            >gi|70924|pir||R3BS9 ribosomal protein S9 - Bacillus
            stearothermophilus
            Length = 129

Frame  1 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100
__________________

Annotated Domains:
   DOMO                 DM00779: RIBOSOMALPROTEINS9              1..128
   PFAM                 Ribosomal_S9: Ribosomal protein S9/S16   9..129
   PRODOM               PD001627: RS9(22) RS16(10) RR9(6)        9..128
   PROSITE              RIBOSOMAL_S9: Ribosomal protein S9 signa 68..86
__________________


  Plus Strand HSPs:

 Score = 122 (42.9 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 50/138 (36%), Positives = 67/138 (48%), Frame = +1

Query:   124 QVQCFG--RKKTAVAVTYCKRGRGLIKINGCPI-ELVEPEILRFKAFEPILLLGRHRFAG 294
             QVQ +G  R+K++VA      G G I +N   I E +  E L     +P++L        
Sbjct:     2 QVQYYGTGRRKSSVARVRLVPGDGRIIVNKQDIREYIPTEALIEMVKQPLVLT--ETLGS 59

Query:   295 VDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 474
              D+ + V GGG   Q  AIR  IA+AL+      VD     E + +L R    LL  D R
Sbjct:    60 YDVLVNVHGGGFAGQAGAIRHGIARALLQ-----VDP----EFRTVLKRAG--LLTRDAR 108

Query:   475 RCEPKKFGGRGARARFQKSYR 537
               E KK+G +GAR   Q S R
Sbjct:   109 VKERKKYGLKGARRAPQFSKR 129


 >gi|223001|prf||0401169A  protein S9 [Escherichia coli]
            Length = 128

Frame  1 hits (HSPs):      _______________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 128
                       0                  50                100

  Plus Strand HSPs:

 Score = 122 (42.9 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 44/130 (33%), Positives = 63/130 (48%), Frame = +1

Query:   139 GRKKTAVAVTYCKRGRGLIKINGCPIE-LVEPEILRFKAFEPILLLGRHRFAGVDMRIRV 315
             GR+K++ A  + K G G I IN   +E     E  R    +P+ L+  +    +D+ I V
Sbjct:     9 GRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELV--NMVEKLDLYITV 66

Query:   316 KGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 495
             KGGG + Q  AIR  I +AL+ Y     DE  + E++          +  D R+ E KK 
Sbjct:    67 KGGGISGQAGAIRHGITRALMEY-----DESLRSELRKA------GFVTRDARQVERKKV 115

Query:   496 GGRGARA-RFQK 528
             G R AR   F K
Sbjct:   116 GLRKARRPEFSK 127


 >gi|9663510|emb|CAC00862.1|  (AL390935) probable proteophosphoglycan [Leishmania
            major]
            Length = 160

Frame  2 hits (HSPs):       ______________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 119 (41.9 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 51/149 (34%), Positives = 76/149 (51%), Frame = +2

Query:    83 QVQYQEGQHQQQSSKCSASGGRRRRWQ*PTASAAEASLRSTAARSSWWSRRSSASRPSSQ 262
             +V    GQ    SS  SAS          ++SA  AS  S  + SS     SS+S PSS 
Sbjct:    16 RVYSSRGQPSSSSSAPSASSSSAPSSS--SSSAPSASSSSAPSSSSSAPSASSSSAPSSS 73

Query:   263 SSSSVATAS---PAWTCASA*RAAVTPPRYTPSGRA*PRLSSLTTRSTSTSSPRRRSRTS 433
             SSS+ + +S   P+ + +SA  A+ +      S  A P  SS +  S+S+S+P   S +S
Sbjct:    74 SSSAPSASSSSAPSXSSSSAPSASSSSAPXXSSSXA-PSASSSSAPSSSSSAP---SASS 129

Query:   434 SSGTTAPSSSPIPAAASPRSSVVAVLAPGFRS 529
             SS  ++ SS+P  +++S  SS  +  AP   S
Sbjct:   130 SSAPSSSSSAPSASSSSAPSSSSS--APSASS 159

 Score = 109 (38.4 bits), Expect = 0.00026, P = 0.00026
 Identities = 49/144 (34%), Positives = 72/144 (50%), Frame = +2

Query:    83 QVQYQEGQHQQQSSKCSASGGRRRRWQ*PTASAAEASLRSTAARSSWWSRRSSASRPSSQ 262
             +V    GQ    SS  SAS          ++SA  AS  S  + SS     SS+S PSS 
Sbjct:    16 RVYSSRGQPSSSSSAPSASSSSAPSSS--SSSAPSASSSSAPSSSSSAPSASSSSAPSSS 73

Query:   263 SSSSVATAS---PAWTCASA*RAAVTPPRYTPSGRA*PRLSSLTTRSTSTSSPRRRSRTS 433
             SSS+ + +S   P+ + +SA  A+ +      S  A P  SS +  S+S+S+P   S ++
Sbjct:    74 SSSAPSASSSSAPSXSSSSAPSASSSSAPXXSSSXA-PSASSSSAPSSSSSAPSASSSSA 132

Query:   434 -SSGTTAPS---------SSPIPAAAS 484
              SS ++APS         SS  P+A+S
Sbjct:   133 PSSSSSAPSASSSSAPSSSSSAPSASS 159

 Score = 83 (29.2 bits), Expect = 1.2, P = 0.69
 Identities = 31/98 (31%), Positives = 49/98 (50%), Frame = +2

Query:   236 SSASRPSSQSSSSVATASPAWTCASA*RAAVTPPRYTPSGRA*PRLSSLTTRSTSTSSPR 415
             SS  +PSS SS+  A++S A + +S+   + +      S  + P  SS +  S+S+SS  
Sbjct:    19 SSRGQPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 78

Query:   416 RRSRTSSSGTTAPSSSPIPAAASPRSSVVAVLAPGFRS 529
               S +SSS  +  SSS   A++S      +  AP   S
Sbjct:    79 --SASSSSAPSXSSSSAPSASSSSAPXXSSSXAPSASS 114

 Score = 83 (29.2 bits), Expect = 1.2, P = 0.69
 Identities = 33/101 (32%), Positives = 54/101 (53%), Frame = +2

Query:   236 SSASRPSSQSSSSVATASPAWTCASA*RAAVTPPRYTPSGRA*PRLSSLTTRSTSTSS-P 412
             SS  +PSS SS+  A++S A + +S+   + +      S  + P  SS +  S+S+SS P
Sbjct:    19 SSRGQPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 78

Query:   413 RRRSRT--SSSGTTAPSSSPIPAAASPRSSVVAVLAPGFRSPT 535
                S +  S S ++APS+S   ++A   SS  A  A    +P+
Sbjct:    79 SASSSSAPSXSSSSAPSASS--SSAPXXSSSXAPSASSSSAPS 119


 >gi|7473855|pir||F75552  ribosomal protein S9 - Deinococcus radiodurans (strain
            R1) >gi|6457841|gb|AAF09761.1|AE001879_9 (AE001879) ribosomal
            protein S9 [Deinococcus radiodurans]
            Length = 133

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 133
                       0                 50                100

  Plus Strand HSPs:

 Score = 119 (41.9 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 48/139 (34%), Positives = 66/139 (47%), Frame = +1

Query:   121 EQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR-FKAFEPILLLGRH-RFAG 294
             EQ    GR+K AVA  + + G G I +NG   +     +LR   A +     G   RF  
Sbjct:     7 EQYYGTGRRKAAVARVFLRPGEGKIVVNGKEFQTYFRGLLRAVNALQGFRETGTAGRFDA 66

Query:   295 VDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 474
             V   I V GGG + Q  AI+  IA+AL+      V+   + ++K       + LL  DPR
Sbjct:    67 V---ITVTGGGPSGQADAIKLGIARALLK-----VNPDFRAQMKP------KGLLTRDPR 112

Query:   475 RCEPKKFGGRGARARFQKSYR 537
               E KK+G + AR   Q S R
Sbjct:   113 EVERKKYGLKKARRAPQFSKR 133


WARNING:  HSPs involving 535 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=6.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.325   0.142   0.449  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.324   0.127   0.400  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.334   0.148   0.455  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.347   0.150   0.517  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.341   0.150   0.549  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.325   0.141   0.458  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      182       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  585
  No. of states in DFA:  585 (58 KB)
  Total size of DFA:  198 KB (256 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  252.78u 1.11s 253.89t  Elapsed: 00:01:17
  Total cpu time:  252.85u 1.14s 253.99t  Elapsed: 00:01:17
  Start:  Wed Jan 16 12:45:45 2002   End:  Wed Jan 16 12:47:02 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000