11 proteins |
R | KOG0110 | RNA-binding protein (RRM superfamily) |
---|
432 letters ecu
1018 = ECU08g0520 (432) = hsa
142 = Hs7662250 (960) = hsa
141 = Hs7705365 (960) = sce
130 = YPR112c (887) = cel
121 = CE18963 (872) = spo
110 = SPBP22H7.02c (833) = ath
93 = At4g19610 (772) = dme
87 = 7294907 (918) = cel
73 _ CE28250 (2514) KOG0890 cel
73 _ CE25103 (2531) KOG0890 cel
73 CE15755 (884) sce
72 _ YKL218c (326) KOG1251 hsa
71 Hs14149744 (2069) cel
70 CE09635 (710) cel
67 _ CE15999 (891) KOG2106 cel
67 CE03956 (285) cel
67 _ CE01407 (787) KOG1128 ath
67 _ At3g13180 (515) KOG1122
BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ECU08g0520 (432 letters) Database: kyvama 112,920 sequences; 47,500,486 total letters Score E Sequences producing significant alignments: (bits) Value ECU08g0520 396 e-110 Hs7662250 59 2e-08 Hs7705365 59 2e-08 YPR112c 55 4e-07 CE18963 51 4e-06 SPBP22H7.02c 47 8e-05 At4g19610 40 0.008 7294907 38 0.037 CE28250 33 1.6 CE25103 33 1.6 CE15755 33 1.6 YKL218c 32 2.0 Hs14149744 32 2.7 CE09635 32 3.5 CE15999 30 7.8 CE03956 30 7.8 CE01407 30 7.8 At3g13180 30 7.8 # >ECU08g0520 # Length = 432 # # Score = 396 bits (1018), Expect = e-110 # Identities = 262/262 (100%), Positives = 262/262 (100%) # # Query: 94 EVREGSPEIGESEERMIKYSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153 # EVREGSPEIGESEERMIKYSR # Sbjct: 94 EVREGSPEIGESEERMIKYSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153 # # Query: 154 XXXXXXXXXXXXXXXXXVQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES 213 # VQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES # Sbjct: 154 XXXXXXXXXXXXXXXXXVQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES 213 # # Query: 214 ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273 # ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME # Sbjct: 214 ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273 # # Query: 274 LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV 333 # LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV # Sbjct: 274 LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV 333 # # Query: 334 PESTGEEPSKRPPEEASGQLMN 355 # PESTGEEPSKRPPEEASGQLMN # Sbjct: 334 PESTGEEPSKRPPEEASGQLMN 355 # # # # Score = 45.1 bits (105), Expect = 3e-04 # Identities = 20/20 (100%), Positives = 20/20 (100%) # # Query: 1 MLCMAAGGGIYDKKALPSRM 20 # MLCMAAGGGIYDKKALPSRM # Sbjct: 1 MLCMAAGGGIYDKKALPSRM 20 # # # >Hs7662250 # Length = 960 # # Score = 59.3 bits (142), Expect = 2e-08 # Identities = 44/184 (23%), Positives = 85/184 (45%), Gaps = 20/184 (10%) # # Query: 185 KDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDK-DLGARMARIETHLVQE 243 # +D+A ++NTLF ++ I + + V D K + R+A ET LVQE # Sbjct: 503 QDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQE 562 # # Query: 244 TKKFLESNGIYLDHLTGSV---DRNMLIVRNM-------ELMKCLDLVDDRCKISVAPSK 293 # ++FL NG+ LD + + + +++V+N+ EL + ++ + # Sbjct: 563 VRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGG 622 # # Query: 294 CLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPI----CSVP-----ESTGEEPSKR 344 # A+++F + +AR+ +R L+ + +Y E+AP+ + P + T EP ++ # Sbjct: 623 TTAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSAAPQKKKLQDTPSEPMEK 682 # # Query: 345 PPEE 348 # P E # Sbjct: 683 DPAE 686 # # # >Hs7705365 # Length = 960 # # Score = 58.9 bits (141), Expect = 2e-08 # Identities = 44/184 (23%), Positives = 85/184 (45%), Gaps = 20/184 (10%) # # Query: 185 KDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDK-DLGARMARIETHLVQE 243 # +D+A ++NTLF ++ I + + V D K + R+A ET LVQE # Sbjct: 503 QDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQE 562 # # Query: 244 TKKFLESNGIYLDHLTGSV---DRNMLIVRNM-------ELMKCLDLVDDRCKISVAPSK 293 # ++FL NG+ LD + + + +++V+N+ EL + ++ + # Sbjct: 563 VRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFGHFGSLGRVLLPEGG 622 # # Query: 294 CLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPI----CSVP-----ESTGEEPSKR 344 # A+++F + +AR+ +R L+ + +Y E+AP+ + P + T EP ++ # Sbjct: 623 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEK 682 # # Query: 345 PPEE 348 # P E # Sbjct: 683 DPAE 686 # # # >YPR112c # Length = 887 # # Score = 54.7 bits (130), Expect = 4e-07 # Identities = 32/154 (20%), Positives = 71/154 (45%), Gaps = 12/154 (7%) # # Query: 188 AEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKF 247 # A RQ +N+L+ + ++++ + + ++D + + A E H++ + +K+ # Sbjct: 450 AASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKY 509 # # Query: 248 LESNGIYLDHL-----TGSVDRNMLIVRNMELMKCLDLVDDRC-------KISVAPSKCL 295 # ES G+ L T D +++V+N + + + ++ + P+ + # Sbjct: 510 FESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTI 569 # # Query: 296 ALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAP 329 # A+++F AR + KLS KR K+ ++Y E P # Sbjct: 570 AIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGP 603 # # # >CE18963 # Length = 872 # # Score = 51.2 bits (121), Expect = 4e-06 # Identities = 36/146 (24%), Positives = 68/146 (45%), Gaps = 12/146 (8%) # # Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVND-KDLGARMARIETHLVQETKKFLESNGIY 254 # +N LF +I + + V D++ + + G R+A ET LV+ET+ F NG+ # Sbjct: 410 WNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLALAETRLVRETRDFFLENGVK 469 # # Query: 255 LDHLTGSVDR---NMLIVRNM-------ELMKCLDLVDDRCKISV-APSKCLALLKFDKE 303 # LD + ++ +++ +N+ EL + + D K+ + AL+ # Sbjct: 470 LDAFSKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMGNP 529 # # Query: 304 EDARRCYRKLSLKRVKEHVVYCEYAP 329 # DA++ +R L+ R + +Y E+AP # Sbjct: 530 VDAKKAFRALAYSRFRSQPLYLEWAP 555 # # # >SPBP22H7.02c # Length = 833 # # Score = 47.0 bits (110), Expect = 8e-05 # Identities = 20/61 (32%), Positives = 35/61 (56%) # # Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYL 255 # +N+L+ + +++V + V D++D D + A ETH++QETK F E +G+ L # Sbjct: 436 WNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQETKNFFEEHGVDL 495 # # Query: 256 D 256 # D # Sbjct: 496 D 496 # # # >At4g19610 # Length = 772 # # Score = 40.4 bits (93), Expect = 0.008 # Identities = 37/145 (25%), Positives = 64/145 (43%), Gaps = 31/145 (21%) # # Query: 216 VSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRN---------M 266 # VS +++D +D R+A ET ++ ETK+ L G+ + L RN + # Sbjct: 351 VSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFATRNGDEKNRSKHI 410 # # Query: 267 LIVRNM-------ELMKCLDLVDDRCKISVAPSKCLALLKFD---------------KEE 304 # L+V+N+ EL + KI + P+K +AL+ F + # Sbjct: 411 LLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALVLFFPCVLRQYIGRIAVFLEPA 470 # # Query: 305 DARRCYRKLSLKRVKEHVVYCEYAP 329 # +AR + ++ KR K+ +Y E+AP # Sbjct: 471 EARAALKGMAYKRYKDAPLYLEWAP 495 # # # >7294907 # Length = 918 # # Score = 38.1 bits (87), Expect = 0.037 # Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%) # # Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGA--RMARIETHLVQETKKFLESNGI 253 # +NTLF ++ + + + + S ++D +D A R+A ET +V E K+FLE G+ # Sbjct: 478 WNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGV 537 # # Query: 254 YLD 256 # LD # Sbjct: 538 RLD 540 # # # >CE28250 # Length = 2514 # # Score = 32.7 bits (73), Expect = 1.6 # Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 20/177 (11%) # # Query: 177 VKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES--ERVSIRDVVDVNDKDLGARMA 234 # V A +C K ++++ F + I K + +S R+ D + +K + + # Sbjct: 7 VSALLCTAKKYVTQKEFNRQKMKFL-LDDITKLLSKSFVSRIEQLDENEFMEKIMILQSI 65 # # Query: 235 RIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKC 294 # HL+ E ++ I L SV +M + EL KC D + ISV # Sbjct: 66 TFTLHLITEKQELSSEEKI---RLFQSVIASMCAFEDEELAKCFDRILSVLMISVT---- 118 # # Query: 295 LALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSVPESTGEEPSKRPPEEASG 351 # K++ Y L+ + E V YC+ P S+P+ E + ASG # Sbjct: 119 -------KQDPRETIY---FLQGLLEVVKYCDVEPSSSLPQLITPEIASAISLGASG 165 # # # >CE25103 # Length = 2531 # # Score = 32.7 bits (73), Expect = 1.6 # Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 20/177 (11%) # # Query: 177 VKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES--ERVSIRDVVDVNDKDLGARMA 234 # V A +C K ++++ F + I K + +S R+ D + +K + + # Sbjct: 7 VSALLCTAKKYVTQKEFNRQKMKFL-LDDITKLLSKSFVSRIEQLDENEFMEKIMILQSI 65 # # Query: 235 RIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKC 294 # HL+ E ++ I L SV +M + EL KC D + ISV # Sbjct: 66 TFTLHLITEKQELSSEEKI---RLFQSVIASMCAFEDEELAKCFDRILSVLMISVT---- 118 # # Query: 295 LALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSVPESTGEEPSKRPPEEASG 351 # K++ Y L+ + E V YC+ P S+P+ E + ASG # Sbjct: 119 -------KQDPRETIY---FLQGLLEVVKYCDVEPSSSLPQLITPEIASAISLGASG 165 # # # >CE15755 # Length = 884 # # Score = 32.7 bits (73), Expect = 1.6 # Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%) # # Query: 264 RNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKL--SLKRVKEH 321 # R+++ R +E + C DR V + L +L EDAR C+ KL S KRV+E # Sbjct: 62 RDLVKYRALEFVGC----QDRLLKEVVDFESLQILV---NEDARECFEKLPESSKRVEEF 114 # # Query: 322 VVYCEYAPICSVPESTGE 339 # C+Y S S G+ # Sbjct: 115 TDSCDYVQPVSRNASKGD 132 # # # >YKL218c # Length = 326 # # Score = 32.3 bits (72), Expect = 2.0 # Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 6/44 (13%) # # Query: 265 NMLIVRNMELMKCLDLVDDRCKISVAPSKCL----ALLKFDKEE 304 # ++L V + EL+KC+ + +R K+ V P+ CL ALLK KEE # Sbjct: 252 DILTVSDQELVKCMHFLAERMKVVVEPTACLGFAGALLK--KEE 293 # # # >Hs14149744 # Length = 2069 # # Score = 32.0 bits (71), Expect = 2.7 # Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 31/142 (21%) # # Query: 183 PWKDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQ 242 # P E+R+ E +N +K E ER ++ V+ + +I+TH+VQ # Sbjct: 1608 PGNSALEEREQEKFN---------LKE--ELERCKVQSSTLVSSLEAELSEVKIQTHIVQ 1656 # # Query: 243 ETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDK 302 # + L+ + + +L +C DL D + KIS S LLK +K # Sbjct: 1657 QENHLLKDE----------------LEKMKQLHRCPDLSDFQQKISSVLSYNEKLLK-EK 1699 # # Query: 303 E---EDARRCYRKLSLKRVKEH 321 # E E+ C KL+ + EH # Sbjct: 1700 EALSEELNSCVDKLAKSSLLEH 1721 # # # >CE09635 # Length = 710 # # Score = 31.6 bits (70), Expect = 3.5 # Identities = 15/57 (26%), Positives = 31/57 (54%) # # Query: 252 GIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARR 308 # G+Y+ + G +++N+LI + C+D ++ +SV SK ++ FD + R+ # Sbjct: 432 GVYITNSHGEIEQNILIKNSSASSVCVDEKNELMYVSVMQSKGRSIHVFDVASNCRK 488 # # # >CE15999 # Length = 891 # # Score = 30.4 bits (67), Expect = 7.8 # Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 14/116 (12%) # # Query: 215 RVSIRDVVDVNDKDLGARMARIET-HLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273 # +V+++ V KD+ + + + T LV F +N + L ++TG DR+ I # Sbjct: 279 KVTLKHVYSYRGKDVRSNIEMLPTGELV-----FFSANLVVLMNITGE-DRSQRIYHGHT 332 # # Query: 274 L-MKCLDLVDDRCKISVAPSKCLALLKFDKEE------DARRCYRKLSLKRVKEHV 322 # +KC+ L ++ ++ S C ++ KF K E R+L ++ + HV # Sbjct: 333 CDVKCITLHPNKILVASGQSSCHSVEKFQKPEHTSPIDSPEDLVRQLEMEHTEAHV 388 # # # >CE03956 # Length = 285 # # Score = 30.4 bits (67), Expect = 7.8 # Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 10/103 (9%) # # Query: 172 QFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVK-RICESERVSIRDVVDVNDKDLG 230 # Q I V+A+ C K+ EK + Y+ + +++ + E + D+V ++ # Sbjct: 56 QLIKNVRAKHCKEKEELEKSLSDLYDKFIEKLKYLMELNALDKENGKLVDMVF----EIS 111 # # Query: 231 ARMARIETHLVQ-----ETKKFLESNGIYLDHLTGSVDRNMLI 268 # +I T + ET K +E NG HLT + M++ # Sbjct: 112 RNWTQINTLFAEFFGMNETLKIIEENGDMYGHLTEIIKNRMMV 154 # # # >CE01407 # Length = 787 # # Score = 30.4 bits (67), Expect = 7.8 # Identities = 16/51 (31%), Positives = 29/51 (56%) # # Query: 200 FFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLES 250 # F + ++ VK R+S+R ++ DKD G+R++ ET +QE + +S # Sbjct: 730 FIASDTSVKEASAKVRLSLRGILTRLDKDSGSRVSGDETEKLQEIVEVAKS 780 # # # >At3g13180 # Length = 515 # # Score = 30.4 bits (67), Expect = 7.8 # Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 4/61 (6%) # # Query: 213 SERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNM 272 # +E + + +DL R R+ T +V T ++ YLDHL GS+ N RNM # Sbjct: 88 NEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWRR----YLDHLIGSLCHNERTFRNM 143 # # Query: 273 E 273 # E # Sbjct: 144 E 144 # # Database: kyvama Posted date: Nov 8, 2002 2:42 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,416,195 Number of Sequences: 112920 Number of extensions: 734104 Number of successful extensions: 1994 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1977 Number of HSP's gapped (non-prelim): 20 length of query: 432 length of database: 47,500,486 effective HSP length: 112 effective length of query: 320 effective length of database: 34,853,446 effective search space: 11153102720 effective search space used: 11153102720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 67 (30.4 bits) S2: 67 (30.4 bits)