11
proteins |
R |
KOG0110 |
RNA-binding protein (RRM superfamily) |
18 hits
432 letters
ecu 
1018 = ECU08g0520 (432) =
hsa 
142 = Hs7662250 (960) =
hsa 141 = Hs7705365 (960) =
sce 
130 = YPR112c (887) =
cel 
121 = CE18963 (872) =
spo 
110 = SPBP22H7.02c (833) =
ath 
93 = At4g19610 (772) =
dme 
87 = 7294907 (918) =
cel 73 _ CE28250 (2514) KOG0890
cel 73 _ CE25103 (2531) KOG0890
cel 73 CE15755 (884)
sce 72 _ YKL218c (326) KOG1251
hsa 71 Hs14149744 (2069)
cel 70 CE09635 (710)
cel 67 _ CE15999 (891) KOG2106
cel 67 CE03956 (285)
cel 67 _ CE01407 (787) KOG1128
ath 67 _ At3g13180 (515) KOG1122
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ECU08g0520
(432 letters)
Database: kyvama
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
ECU08g0520 396 e-110
Hs7662250 59 2e-08
Hs7705365 59 2e-08
YPR112c 55 4e-07
CE18963 51 4e-06
SPBP22H7.02c 47 8e-05
At4g19610 40 0.008
7294907 38 0.037
CE28250 33 1.6
CE25103 33 1.6
CE15755 33 1.6
YKL218c 32 2.0
Hs14149744 32 2.7
CE09635 32 3.5
CE15999 30 7.8
CE03956 30 7.8
CE01407 30 7.8
At3g13180 30 7.8
# >ECU08g0520
# Length = 432
#
# Score = 396 bits (1018), Expect = e-110
# Identities = 262/262 (100%), Positives = 262/262 (100%)
#
# Query: 94 EVREGSPEIGESEERMIKYSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153
# EVREGSPEIGESEERMIKYSR
# Sbjct: 94 EVREGSPEIGESEERMIKYSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153
#
# Query: 154 XXXXXXXXXXXXXXXXXVQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES 213
# VQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES
# Sbjct: 154 XXXXXXXXXXXXXXXXXVQFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES 213
#
# Query: 214 ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273
# ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME
# Sbjct: 214 ERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273
#
# Query: 274 LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV 333
# LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV
# Sbjct: 274 LMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSV 333
#
# Query: 334 PESTGEEPSKRPPEEASGQLMN 355
# PESTGEEPSKRPPEEASGQLMN
# Sbjct: 334 PESTGEEPSKRPPEEASGQLMN 355
#
#
#
# Score = 45.1 bits (105), Expect = 3e-04
# Identities = 20/20 (100%), Positives = 20/20 (100%)
#
# Query: 1 MLCMAAGGGIYDKKALPSRM 20
# MLCMAAGGGIYDKKALPSRM
# Sbjct: 1 MLCMAAGGGIYDKKALPSRM 20
#
#
# >Hs7662250
# Length = 960
#
# Score = 59.3 bits (142), Expect = 2e-08
# Identities = 44/184 (23%), Positives = 85/184 (45%), Gaps = 20/184 (10%)
#
# Query: 185 KDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDK-DLGARMARIETHLVQE 243
# +D+A ++NTLF ++ I + + V D K + R+A ET LVQE
# Sbjct: 503 QDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQE 562
#
# Query: 244 TKKFLESNGIYLDHLTGSV---DRNMLIVRNM-------ELMKCLDLVDDRCKISVAPSK 293
# ++FL NG+ LD + + + +++V+N+ EL + ++ +
# Sbjct: 563 VRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGG 622
#
# Query: 294 CLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPI----CSVP-----ESTGEEPSKR 344
# A+++F + +AR+ +R L+ + +Y E+AP+ + P + T EP ++
# Sbjct: 623 TTAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSAAPQKKKLQDTPSEPMEK 682
#
# Query: 345 PPEE 348
# P E
# Sbjct: 683 DPAE 686
#
#
# >Hs7705365
# Length = 960
#
# Score = 58.9 bits (141), Expect = 2e-08
# Identities = 44/184 (23%), Positives = 85/184 (45%), Gaps = 20/184 (10%)
#
# Query: 185 KDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDK-DLGARMARIETHLVQE 243
# +D+A ++NTLF ++ I + + V D K + R+A ET LVQE
# Sbjct: 503 QDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQE 562
#
# Query: 244 TKKFLESNGIYLDHLTGSV---DRNMLIVRNM-------ELMKCLDLVDDRCKISVAPSK 293
# ++FL NG+ LD + + + +++V+N+ EL + ++ +
# Sbjct: 563 VRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAELQETFGHFGSLGRVLLPEGG 622
#
# Query: 294 CLALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPI----CSVP-----ESTGEEPSKR 344
# A+++F + +AR+ +R L+ + +Y E+AP+ + P + T EP ++
# Sbjct: 623 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEK 682
#
# Query: 345 PPEE 348
# P E
# Sbjct: 683 DPAE 686
#
#
# >YPR112c
# Length = 887
#
# Score = 54.7 bits (130), Expect = 4e-07
# Identities = 32/154 (20%), Positives = 71/154 (45%), Gaps = 12/154 (7%)
#
# Query: 188 AEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKF 247
# A RQ +N+L+ + ++++ + + ++D + + A E H++ + +K+
# Sbjct: 450 AASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDAENSSSAVKQALAEAHVIGDVRKY 509
#
# Query: 248 LESNGIYLDHL-----TGSVDRNMLIVRNMELMKCLDLVDDRC-------KISVAPSKCL 295
# ES G+ L T D +++V+N + + + ++ + P+ +
# Sbjct: 510 FESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPAGTI 569
#
# Query: 296 ALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAP 329
# A+++F AR + KLS KR K+ ++Y E P
# Sbjct: 570 AIVQFRDTTSARAAFTKLSYKRFKDGIIYLERGP 603
#
#
# >CE18963
# Length = 872
#
# Score = 51.2 bits (121), Expect = 4e-06
# Identities = 36/146 (24%), Positives = 68/146 (45%), Gaps = 12/146 (8%)
#
# Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVND-KDLGARMARIETHLVQETKKFLESNGIY 254
# +N LF +I + + V D++ + + G R+A ET LV+ET+ F NG+
# Sbjct: 410 WNALFLGANAIADTLAQRLNVKKSDLLTSDQGESAGVRLALAETRLVRETRDFFLENGVK 469
#
# Query: 255 LDHLTGSVDR---NMLIVRNM-------ELMKCLDLVDDRCKISV-APSKCLALLKFDKE 303
# LD + ++ +++ +N+ EL + + D K+ + AL+
# Sbjct: 470 LDAFSKPAEKRSDTVMLAKNLPAGVESEELQRMFEKFGDCTKVLMPTEGGVSALVIMGNP 529
#
# Query: 304 EDARRCYRKLSLKRVKEHVVYCEYAP 329
# DA++ +R L+ R + +Y E+AP
# Sbjct: 530 VDAKKAFRALAYSRFRSQPLYLEWAP 555
#
#
# >SPBP22H7.02c
# Length = 833
#
# Score = 47.0 bits (110), Expect = 8e-05
# Identities = 20/61 (32%), Positives = 35/61 (56%)
#
# Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYL 255
# +N+L+ + +++V + V D++D D + A ETH++QETK F E +G+ L
# Sbjct: 436 WNSLYMNADAVVTSLASRLGVKKTDILDPTSSDSAVKQALTETHVIQETKNFFEEHGVDL 495
#
# Query: 256 D 256
# D
# Sbjct: 496 D 496
#
#
# >At4g19610
# Length = 772
#
# Score = 40.4 bits (93), Expect = 0.008
# Identities = 37/145 (25%), Positives = 64/145 (43%), Gaps = 31/145 (21%)
#
# Query: 216 VSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRN---------M 266
# VS +++D +D R+A ET ++ ETK+ L G+ + L RN +
# Sbjct: 351 VSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFATRNGDEKNRSKHI 410
#
# Query: 267 LIVRNM-------ELMKCLDLVDDRCKISVAPSKCLALLKFD---------------KEE 304
# L+V+N+ EL + KI + P+K +AL+ F +
# Sbjct: 411 LLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALVLFFPCVLRQYIGRIAVFLEPA 470
#
# Query: 305 DARRCYRKLSLKRVKEHVVYCEYAP 329
# +AR + ++ KR K+ +Y E+AP
# Sbjct: 471 EARAALKGMAYKRYKDAPLYLEWAP 495
#
#
# >7294907
# Length = 918
#
# Score = 38.1 bits (87), Expect = 0.037
# Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
#
# Query: 196 YNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGA--RMARIETHLVQETKKFLESNGI 253
# +NTLF ++ + + + + S ++D +D A R+A ET +V E K+FLE G+
# Sbjct: 478 WNTLFLGANAVAEILAKQFKTSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGV 537
#
# Query: 254 YLD 256
# LD
# Sbjct: 538 RLD 540
#
#
# >CE28250
# Length = 2514
#
# Score = 32.7 bits (73), Expect = 1.6
# Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 20/177 (11%)
#
# Query: 177 VKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES--ERVSIRDVVDVNDKDLGARMA 234
# V A +C K ++++ F + I K + +S R+ D + +K + +
# Sbjct: 7 VSALLCTAKKYVTQKEFNRQKMKFL-LDDITKLLSKSFVSRIEQLDENEFMEKIMILQSI 65
#
# Query: 235 RIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKC 294
# HL+ E ++ I L SV +M + EL KC D + ISV
# Sbjct: 66 TFTLHLITEKQELSSEEKI---RLFQSVIASMCAFEDEELAKCFDRILSVLMISVT---- 118
#
# Query: 295 LALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSVPESTGEEPSKRPPEEASG 351
# K++ Y L+ + E V YC+ P S+P+ E + ASG
# Sbjct: 119 -------KQDPRETIY---FLQGLLEVVKYCDVEPSSSLPQLITPEIASAISLGASG 165
#
#
# >CE25103
# Length = 2531
#
# Score = 32.7 bits (73), Expect = 1.6
# Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 20/177 (11%)
#
# Query: 177 VKARMCPWKDRAEKRQYEHYNTLFFSFESIVKRICES--ERVSIRDVVDVNDKDLGARMA 234
# V A +C K ++++ F + I K + +S R+ D + +K + +
# Sbjct: 7 VSALLCTAKKYVTQKEFNRQKMKFL-LDDITKLLSKSFVSRIEQLDENEFMEKIMILQSI 65
#
# Query: 235 RIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKC 294
# HL+ E ++ I L SV +M + EL KC D + ISV
# Sbjct: 66 TFTLHLITEKQELSSEEKI---RLFQSVIASMCAFEDEELAKCFDRILSVLMISVT---- 118
#
# Query: 295 LALLKFDKEEDARRCYRKLSLKRVKEHVVYCEYAPICSVPESTGEEPSKRPPEEASG 351
# K++ Y L+ + E V YC+ P S+P+ E + ASG
# Sbjct: 119 -------KQDPRETIY---FLQGLLEVVKYCDVEPSSSLPQLITPEIASAISLGASG 165
#
#
# >CE15755
# Length = 884
#
# Score = 32.7 bits (73), Expect = 1.6
# Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
#
# Query: 264 RNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARRCYRKL--SLKRVKEH 321
# R+++ R +E + C DR V + L +L EDAR C+ KL S KRV+E
# Sbjct: 62 RDLVKYRALEFVGC----QDRLLKEVVDFESLQILV---NEDARECFEKLPESSKRVEEF 114
#
# Query: 322 VVYCEYAPICSVPESTGE 339
# C+Y S S G+
# Sbjct: 115 TDSCDYVQPVSRNASKGD 132
#
#
# >YKL218c
# Length = 326
#
# Score = 32.3 bits (72), Expect = 2.0
# Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
#
# Query: 265 NMLIVRNMELMKCLDLVDDRCKISVAPSKCL----ALLKFDKEE 304
# ++L V + EL+KC+ + +R K+ V P+ CL ALLK KEE
# Sbjct: 252 DILTVSDQELVKCMHFLAERMKVVVEPTACLGFAGALLK--KEE 293
#
#
# >Hs14149744
# Length = 2069
#
# Score = 32.0 bits (71), Expect = 2.7
# Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 31/142 (21%)
#
# Query: 183 PWKDRAEKRQYEHYNTLFFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQ 242
# P E+R+ E +N +K E ER ++ V+ + +I+TH+VQ
# Sbjct: 1608 PGNSALEEREQEKFN---------LKE--ELERCKVQSSTLVSSLEAELSEVKIQTHIVQ 1656
#
# Query: 243 ETKKFLESNGIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDK 302
# + L+ + + +L +C DL D + KIS S LLK +K
# Sbjct: 1657 QENHLLKDE----------------LEKMKQLHRCPDLSDFQQKISSVLSYNEKLLK-EK 1699
#
# Query: 303 E---EDARRCYRKLSLKRVKEH 321
# E E+ C KL+ + EH
# Sbjct: 1700 EALSEELNSCVDKLAKSSLLEH 1721
#
#
# >CE09635
# Length = 710
#
# Score = 31.6 bits (70), Expect = 3.5
# Identities = 15/57 (26%), Positives = 31/57 (54%)
#
# Query: 252 GIYLDHLTGSVDRNMLIVRNMELMKCLDLVDDRCKISVAPSKCLALLKFDKEEDARR 308
# G+Y+ + G +++N+LI + C+D ++ +SV SK ++ FD + R+
# Sbjct: 432 GVYITNSHGEIEQNILIKNSSASSVCVDEKNELMYVSVMQSKGRSIHVFDVASNCRK 488
#
#
# >CE15999
# Length = 891
#
# Score = 30.4 bits (67), Expect = 7.8
# Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
#
# Query: 215 RVSIRDVVDVNDKDLGARMARIET-HLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNME 273
# +V+++ V KD+ + + + T LV F +N + L ++TG DR+ I
# Sbjct: 279 KVTLKHVYSYRGKDVRSNIEMLPTGELV-----FFSANLVVLMNITGE-DRSQRIYHGHT 332
#
# Query: 274 L-MKCLDLVDDRCKISVAPSKCLALLKFDKEE------DARRCYRKLSLKRVKEHV 322
# +KC+ L ++ ++ S C ++ KF K E R+L ++ + HV
# Sbjct: 333 CDVKCITLHPNKILVASGQSSCHSVEKFQKPEHTSPIDSPEDLVRQLEMEHTEAHV 388
#
#
# >CE03956
# Length = 285
#
# Score = 30.4 bits (67), Expect = 7.8
# Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
#
# Query: 172 QFIGGVKARMCPWKDRAEKRQYEHYNTLFFSFESIVK-RICESERVSIRDVVDVNDKDLG 230
# Q I V+A+ C K+ EK + Y+ + +++ + E + D+V ++
# Sbjct: 56 QLIKNVRAKHCKEKEELEKSLSDLYDKFIEKLKYLMELNALDKENGKLVDMVF----EIS 111
#
# Query: 231 ARMARIETHLVQ-----ETKKFLESNGIYLDHLTGSVDRNMLI 268
# +I T + ET K +E NG HLT + M++
# Sbjct: 112 RNWTQINTLFAEFFGMNETLKIIEENGDMYGHLTEIIKNRMMV 154
#
#
# >CE01407
# Length = 787
#
# Score = 30.4 bits (67), Expect = 7.8
# Identities = 16/51 (31%), Positives = 29/51 (56%)
#
# Query: 200 FFSFESIVKRICESERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLES 250
# F + ++ VK R+S+R ++ DKD G+R++ ET +QE + +S
# Sbjct: 730 FIASDTSVKEASAKVRLSLRGILTRLDKDSGSRVSGDETEKLQEIVEVAKS 780
#
#
# >At3g13180
# Length = 515
#
# Score = 30.4 bits (67), Expect = 7.8
# Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 4/61 (6%)
#
# Query: 213 SERVSIRDVVDVNDKDLGARMARIETHLVQETKKFLESNGIYLDHLTGSVDRNMLIVRNM 272
# +E + + +DL R R+ T +V T ++ YLDHL GS+ N RNM
# Sbjct: 88 NEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWRR----YLDHLIGSLCHNERTFRNM 143
#
# Query: 273 E 273
# E
# Sbjct: 144 E 144
#
#
Database: kyvama
Posted date: Nov 8, 2002 2:42 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,416,195
Number of Sequences: 112920
Number of extensions: 734104
Number of successful extensions: 1994
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1977
Number of HSP's gapped (non-prelim): 20
length of query: 432
length of database: 47,500,486
effective HSP length: 112
effective length of query: 320
effective length of database: 34,853,446
effective search space: 11153102720
effective search space used: 11153102720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
S2: 67 (30.4 bits)