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NCBI C Toolkit Cross ReferenceC/demo/testent2.c |
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1 #include <ncbi.h>
2 #include <asn.h>
3 #include <objall.h>
4 #include <objsub.h>
5 #include <objfdef.h>
6 #include <sqnutils.h>
7 #include <ent2api.h>
8 #include <urlquery.h>
9
10 static void SaveEntrezRequest (Entrez2RequestPtr e2rq)
11
12 {
13 AsnIoPtr aip;
14
15 if (e2rq == NULL) return;
16 aip = AsnIoOpen ("stdout", "w");
17 if (aip == NULL) return;
18 Entrez2RequestAsnWrite (e2rq, aip, NULL);
19 AsnIoFlush (aip);
20 AsnIoClose (aip);
21 printf ("\n");
22 fflush (stdout);
23 }
24
25 static void SaveEntrezReply (Entrez2ReplyPtr e2ry)
26
27 {
28 AsnIoPtr aip;
29
30 if (e2ry == NULL) {
31 printf ("Entrez2ReplyPtr is NULL\n");
32 return;
33 }
34 aip = AsnIoOpen ("stdout", "w");
35 if (aip == NULL) return;
36 Entrez2ReplyAsnWrite (e2ry, aip, NULL);
37 AsnIoFlush (aip);
38 AsnIoClose (aip);
39 printf ("\n\n");
40 fflush (stdout);
41 }
42
43 static void SaveBooleanIdList (Entrez2ReplyPtr e2ry)
44
45 {
46 Entrez2BooleanReplyPtr e2br;
47 Entrez2IdListPtr e2lp;
48 Int4 i;
49 E2ReplyPtr reply;
50 Uint4 uid;
51
52 if (e2ry == NULL) return;
53 reply = e2ry->reply;
54 if (reply == NULL || reply->choice != E2Reply_eval_boolean) return;
55 e2br = EntrezExtractBooleanReply (e2ry);
56 if (e2br == NULL) return;
57
58 printf ("Boolean reply - count is %ld\n", (long) e2br->count);
59 e2lp = e2br->uids;
60 if (e2lp != NULL) {
61 BSSeek (e2lp->uids, 0, SEEK_SET);
62 for (i = 0; i < e2lp->num; i++) {
63 uid = Nlm_BSGetUint4 (e2lp->uids);
64 printf ("%ld\n", (long) uid);
65 }
66 }
67 printf ("\n");
68
69 Entrez2BooleanReplyFree (e2br);
70 }
71
72 static Int4 pmuidlist [] = {
73 3038955,
74 2539356
75 };
76
77 static Int4 jkuidlist [] = {
78 11449736,
79 11449725,
80 10838572,
81 9707937,
82 9707929,
83 8743683,
84 1937004,
85 2005826,
86 2678811,
87 2539356,
88 7252148
89 };
90
91 static Int4 nucuidlist [] = {
92 14993658,
93 14971124
94 };
95
96 static Int4 protuidlist [] = {
97 131784,
98 172345
99 };
100
101 static Int4 taxuidlist [] = {
102 40674
103 };
104
105 static Int4 DoInfoValidation (Entrez2ReplyPtr e2ry, Boolean showinfo)
106
107 {
108 CharPtr cookie;
109 Entrez2DbInfoPtr e2db;
110 Entrez2FieldInfoPtr e2fd;
111 Entrez2InfoPtr e2ip;
112 ValNodePtr head = NULL;
113 Int4 orgtermcount = -1;
114 E2ReplyPtr reply;
115 CharPtr str;
116 ValNodePtr vnp;
117
118 if (e2ry != NULL) {
119 cookie = StringSave (e2ry->cookie);
120 reply = e2ry->reply;
121 if (showinfo) {
122 SaveEntrezReply (e2ry);
123 }
124 if (reply != NULL && reply->choice == E2Reply_get_info) {
125 e2ip = EntrezExtractInfoReply (e2ry);
126 if (ValidateEntrez2InfoPtr (e2ip, &head)) {
127 printf ("GetInfo validation succeeded\n");
128 } else {
129 printf ("GetInfo validation failed\n");
130 for (vnp = head; vnp != NULL; vnp = vnp->next) {
131 str = (CharPtr) vnp->data.ptrvalue;
132 if (str == NULL) continue;
133 printf ("%s\n", str);
134 }
135 ValNodeFreeData (head);
136 }
137 if (e2ip != NULL) {
138 for (e2db = e2ip->db_info; e2db != NULL; e2db = e2db->next) {
139 if (StringICmp (e2db->db_name, "nucleotide") == 0) {
140 for (e2fd = e2db->fields; e2fd != NULL; e2fd = e2fd->next) {
141 if (StringICmp (e2fd->field_name, "ORGN") == 0) {
142 orgtermcount = e2fd->term_count;
143 printf ("Nucleotide ORGN term count is %ld\n", orgtermcount);
144 }
145 }
146 }
147 }
148 }
149 Entrez2InfoFree (e2ip);
150 } else {
151 if (reply != NULL) {
152 printf ("GetInfo request returned reply choice %d\n", (int) reply->choice);
153 SaveEntrezReply (e2ry);
154 } else {
155 printf ("GetInfo request returned NULL reply\n");
156 }
157 Entrez2ReplyFree (e2ry);
158 }
159 if (cookie == NULL) {
160 cookie = "(null)";
161 }
162 printf ("initial returned cookie:\n%s\n\n", cookie);
163 } else {
164 printf ("GetInfo request failed\n\n");
165 }
166 return orgtermcount;
167 }
168
169 static void NewTextE2 (Boolean showuids, Boolean showinfo)
170
171 {
172 Entrez2RequestPtr e2rq;
173 Entrez2ReplyPtr e2ry;
174 CharPtr key1 = NULL;
175 Int4 pos = -1;
176 CharPtr str;
177
178 e2rq = EntrezCreateGetInfoRequest ();
179 SaveEntrezRequest (e2rq);
180 e2ry = EntrezSynchronousQuery (e2rq);
181 e2rq = Entrez2RequestFree (e2rq);
182 DoInfoValidation (e2ry, showinfo);
183
184 str = "\"1900/01/01\"[MDAT] : \"1993/12/31\"[MDAT]";
185 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "nucleotide", str, 0, 0, NULL, 0, 0);
186 SaveEntrezRequest (e2rq);
187 e2ry = EntrezSynchronousQuery (e2rq);
188 e2rq = Entrez2RequestFree (e2rq);
189 if (e2ry != NULL) {
190 SaveEntrezReply (e2ry);
191 if (showuids) {
192 SaveBooleanIdList (e2ry); /* also frees e2ry */
193 } else {
194 Entrez2ReplyFree (e2ry);
195 }
196 } else {
197 printf ("Boolean request failed\n");
198 }
199
200 e2rq = EntrezCreateBooleanRequest (FALSE, FALSE, "PubMed", NULL, 0, 0, NULL, 0, 0);
201 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, NULL, 0, 11, jkuidlist, NULL, FALSE, FALSE);
202 SaveEntrezRequest (e2rq);
203 e2ry = EntrezSynchronousQuery (e2rq);
204 e2rq = Entrez2RequestFree (e2rq);
205 if (e2ry != NULL) {
206 key1 = StringSave (e2ry->key);
207 SaveEntrezReply (e2ry);
208 if (showuids) {
209 SaveBooleanIdList (e2ry); /* also frees e2ry */
210 } else {
211 Entrez2ReplyFree (e2ry);
212 }
213 } else {
214 printf ("Boolean request failed\n");
215 }
216
217 e2rq = EntrezCreateBooleanRequest (FALSE, FALSE, "PubMed", NULL, 0, 0, NULL, 0, 0);
218 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, key1, 0, 0, NULL, NULL, FALSE, FALSE);
219 SaveEntrezRequest (e2rq);
220 e2ry = EntrezSynchronousQuery (e2rq);
221 e2rq = Entrez2RequestFree (e2rq);
222 if (e2ry != NULL) {
223 SaveEntrezReply (e2ry);
224 if (showuids) {
225 SaveBooleanIdList (e2ry); /* also frees e2ry */
226 } else {
227 Entrez2ReplyFree (e2ry);
228 }
229 } else {
230 printf ("Boolean request failed\n");
231 }
232
233 e2rq = EntrezCreateGetTermPositionRequest ("PubMed", "AUTH", "wheelan s");
234 SaveEntrezRequest (e2rq);
235 e2ry = EntrezSynchronousQuery (e2rq);
236 e2rq = Entrez2RequestFree (e2rq);
237 if (e2ry != NULL) {
238 SaveEntrezReply (e2ry);
239 pos = EntrezExtractTermPosReply (e2ry);
240 Entrez2ReplyFree (e2ry);
241 } else {
242 printf ("GetTermPosition request failed\n");
243 }
244
245 if (pos >= 0) {
246 e2rq = EntrezCreateGetTermListRequest ("PubMed", "AUTH", pos, 4);
247 SaveEntrezRequest (e2rq);
248 e2ry = EntrezSynchronousQuery (e2rq);
249 e2rq = Entrez2RequestFree (e2rq);
250 if (e2ry != NULL) {
251 SaveEntrezReply (e2ry);
252 Entrez2ReplyFree (e2ry);
253 } else {
254 printf ("GetTermList request failed\n");
255 }
256 }
257
258 e2rq = EntrezCreateBooleanRequest (FALSE, FALSE, "PubMed", NULL, 0, 0, NULL, 0, 0);
259 EntrezAddToBooleanRequest (e2rq, NULL, 0, "AUTH", "wheelan s", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
260 SaveEntrezRequest (e2rq);
261 e2ry = EntrezSynchronousQuery (e2rq);
262 e2rq = Entrez2RequestFree (e2rq);
263 if (e2ry != NULL) {
264 SaveEntrezReply (e2ry);
265 if (showuids) {
266 SaveBooleanIdList (e2ry); /* also frees e2ry */
267 } else {
268 Entrez2ReplyFree (e2ry);
269 }
270 } else {
271 printf ("Boolean request failed\n");
272 }
273
274 e2rq = EntrezCreateBooleanRequest (FALSE, FALSE, "PubMed", NULL, 0, 0, NULL, 0, 0);
275 EntrezAddToBooleanRequest (e2rq, NULL, 0, "AUTH", "wheelan s", NULL, 0, 0, NULL, NULL, FALSE, TRUE);
276 SaveEntrezRequest (e2rq);
277 e2ry = EntrezSynchronousQuery (e2rq);
278 e2rq = Entrez2RequestFree (e2rq);
279 if (e2ry != NULL) {
280 SaveEntrezReply (e2ry);
281 if (showuids) {
282 SaveBooleanIdList (e2ry); /* also frees e2ry */
283 } else {
284 Entrez2ReplyFree (e2ry);
285 }
286 } else {
287 printf ("Boolean request failed\n");
288 }
289 }
290
291 static void TestE2 (Boolean dohuge, Boolean showuids, Boolean showinfo)
292
293 {
294 Int4 count;
295 Entrez2RequestPtr e2rq;
296 Entrez2ReplyPtr e2ry;
297 CharPtr key1 = NULL;
298 CharPtr key2 = NULL;
299 CharPtr key3 = NULL;
300 Int4 orgtermcount = -1;
301 Int4 pos = -1;
302 CharPtr str;
303
304 e2rq = EntrezCreateGetInfoRequest ();
305 SaveEntrezRequest (e2rq);
306 e2ry = EntrezSynchronousQuery (e2rq);
307 e2rq = Entrez2RequestFree (e2rq);
308 orgtermcount = DoInfoValidation (e2ry, showinfo);
309
310 e2rq = EntrezCreateBooleanRequest (FALSE, FALSE, "taxonomy", NULL, 0, 0, NULL, 0, 0);
311 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, NULL, 0, 1, taxuidlist, NULL, FALSE, FALSE);
312 SaveEntrezRequest (e2rq);
313 e2ry = EntrezSynchronousQuery (e2rq);
314 e2rq = Entrez2RequestFree (e2rq);
315 if (e2ry != NULL) {
316 SaveEntrezReply (e2ry);
317 if (showuids) {
318 SaveBooleanIdList (e2ry); /* also frees e2ry */
319 } else {
320 Entrez2ReplyFree (e2ry);
321 }
322 } else {
323 printf ("Boolean request failed\n");
324 }
325
326 e2rq = EntrezCreateBooleanRequest (FALSE, TRUE, "PubMed", "ras mutation binding", 0, 0, NULL, 0, 0);
327 SaveEntrezRequest (e2rq);
328 e2ry = EntrezSynchronousQuery (e2rq);
329 e2rq = Entrez2RequestFree (e2rq);
330 if (e2ry != NULL) {
331 SaveEntrezReply (e2ry);
332 if (showuids) {
333 SaveBooleanIdList (e2ry); /* also frees e2ry */
334 } else {
335 Entrez2ReplyFree (e2ry);
336 }
337 } else {
338 printf ("Boolean request failed\n");
339 }
340
341 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "Nucleotide", "recA [BAD", 0, 0, NULL, 10, 0);
342 SaveEntrezRequest (e2rq);
343 e2ry = EntrezSynchronousQuery (e2rq);
344 e2rq = Entrez2RequestFree (e2rq);
345 if (e2ry != NULL) {
346 SaveEntrezReply (e2ry);
347 if (showuids) {
348 SaveBooleanIdList (e2ry); /* also frees e2ry */
349 } else {
350 Entrez2ReplyFree (e2ry);
351 }
352 } else {
353 printf ("Boolean request failed\n");
354 }
355
356 e2rq = EntrezCreateGetTermPositionRequest ("nucleotide", "ORGN", "Zea");
357 SaveEntrezRequest (e2rq);
358 e2ry = EntrezSynchronousQuery (e2rq);
359 e2rq = Entrez2RequestFree (e2rq);
360 if (e2ry != NULL) {
361 SaveEntrezReply (e2ry);
362 pos = EntrezExtractTermPosReply (e2ry); /* also frees e2ry */
363 printf ("Zea position is %ld\n", pos);
364 } else {
365 printf ("GetTermPosition request failed\n");
366 }
367
368 if (pos >= 0 && orgtermcount >= 0) {
369 count = 20;
370 if (pos + count >= orgtermcount) {
371 count = orgtermcount - pos - 1;
372 }
373 e2rq = EntrezCreateGetTermListRequest ("nucleotide", "ORGN", pos, count);
374 SaveEntrezRequest (e2rq);
375 e2ry = EntrezSynchronousQuery (e2rq);
376 e2rq = Entrez2RequestFree (e2rq);
377 if (e2ry != NULL) {
378 SaveEntrezReply (e2ry);
379 Entrez2ReplyFree (e2ry);
380 } else {
381 printf ("GetTermList request failed\n");
382 }
383 }
384
385 e2rq = EntrezCreateDocSumRequest ("nucleotide", 1322283, 0, NULL, NULL);
386 SaveEntrezRequest (e2rq);
387 e2ry = EntrezSynchronousQuery (e2rq);
388 e2rq = Entrez2RequestFree (e2rq);
389 if (e2ry != NULL) {
390 SaveEntrezReply (e2ry);
391 Entrez2ReplyFree (e2ry);
392 } else {
393 printf ("DocSum request failed\n");
394 }
395
396 e2rq = EntrezCreateDocSumRequest ("Nucleotide", 0, 2, nucuidlist, NULL);
397 SaveEntrezRequest (e2rq);
398 e2ry = EntrezSynchronousQuery (e2rq);
399 e2rq = Entrez2RequestFree (e2rq);
400 if (e2ry != NULL) {
401 SaveEntrezReply (e2ry);
402 Entrez2ReplyFree (e2ry);
403 } else {
404 printf ("DocSum request failed\n");
405 }
406
407 e2rq = EntrezCreateGetLinksRequest ("Protein", 0, 1, protuidlist, NULL, "protein_protein", 30000, FALSE, TRUE);
408 SaveEntrezRequest (e2rq);
409 e2ry = EntrezSynchronousQuery (e2rq);
410 e2rq = Entrez2RequestFree (e2rq);
411 if (e2ry != NULL) {
412 SaveEntrezReply (e2ry);
413 Entrez2ReplyFree (e2ry);
414 } else {
415 printf ("GetLinks request failed\n");
416 }
417
418 e2rq = EntrezCreateGetLinksRequest ("Protein", 0, 2, protuidlist, NULL, "protein_protein", 30000, FALSE, TRUE);
419 SaveEntrezRequest (e2rq);
420 e2ry = EntrezSynchronousQuery (e2rq);
421 e2rq = Entrez2RequestFree (e2rq);
422 if (e2ry != NULL) {
423 SaveEntrezReply (e2ry);
424 Entrez2ReplyFree (e2ry);
425 } else {
426 printf ("GetLinks request failed\n");
427 }
428
429 str = "((\"Aedes albopictus\"[Organism] AND ((1900[MDAT] : 3000[MDAT]) NOT patent[PROP])) AND gene_in_genomic[PROP])";
430 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "nucleotide", str, 0, 0, NULL, 0, 0);
431 SaveEntrezRequest (e2rq);
432 e2ry = EntrezSynchronousQuery (e2rq);
433 e2rq = Entrez2RequestFree (e2rq);
434 if (e2ry != NULL) {
435 SaveEntrezReply (e2ry);
436 if (showuids) {
437 SaveBooleanIdList (e2ry); /* also frees e2ry */
438 } else {
439 Entrez2ReplyFree (e2ry);
440 }
441 } else {
442 printf ("Boolean request failed\n");
443 }
444
445 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", "Kans JA [AUTH]", 0, 0, NULL, 0, 0);
446 SaveEntrezRequest (e2rq);
447 e2ry = EntrezSynchronousQuery (e2rq);
448 e2rq = Entrez2RequestFree (e2rq);
449 if (e2ry != NULL) {
450 key1 = StringSave (e2ry->key);
451 SaveEntrezReply (e2ry);
452 if (showuids) {
453 SaveBooleanIdList (e2ry); /* also frees e2ry */
454 } else {
455 Entrez2ReplyFree (e2ry);
456 }
457 } else {
458 printf ("Boolean request failed\n");
459 }
460
461 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", "Casadaban MJ [AUTH]", 0, 0, NULL, 0, 0);
462 SaveEntrezRequest (e2rq);
463 e2ry = EntrezSynchronousQuery (e2rq);
464 e2rq = Entrez2RequestFree (e2rq);
465 if (e2ry != NULL) {
466 key2 = StringSave (e2ry->key);
467 SaveEntrezReply (e2ry);
468 if (showuids) {
469 SaveBooleanIdList (e2ry); /* also frees e2ry */
470 } else {
471 Entrez2ReplyFree (e2ry);
472 }
473 } else {
474 printf ("Boolean request failed\n");
475 }
476
477 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 0, 0);
478 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, key1, 0, 0, NULL, NULL, FALSE, FALSE);
479 EntrezAddToBooleanRequest (e2rq, NULL, ENTREZ_OP_AND, NULL, NULL, NULL, 0, 0, NULL, NULL, FALSE, FALSE);
480 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, key2, 0, 0, NULL, NULL, FALSE, FALSE);
481 SaveEntrezRequest (e2rq);
482 e2ry = EntrezSynchronousQuery (e2rq);
483 e2rq = Entrez2RequestFree (e2rq);
484 if (e2ry != NULL) {
485 SaveEntrezReply (e2ry);
486 if (showuids) {
487 SaveBooleanIdList (e2ry); /* also frees e2ry */
488 } else {
489 Entrez2ReplyFree (e2ry);
490 }
491 } else {
492 printf ("Boolean request failed\n");
493 }
494
495 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 0, 0);
496 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, NULL, 0, 2, pmuidlist, NULL, FALSE, FALSE);
497 SaveEntrezRequest (e2rq);
498 e2ry = EntrezSynchronousQuery (e2rq);
499 e2rq = Entrez2RequestFree (e2rq);
500 if (e2ry != NULL) {
501 key3 = StringSave (e2ry->key);
502 SaveEntrezReply (e2ry);
503 if (showuids) {
504 SaveBooleanIdList (e2ry); /* also frees e2ry */
505 } else {
506 Entrez2ReplyFree (e2ry);
507 }
508 } else {
509 printf ("Boolean request failed\n");
510 }
511
512 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 0, 0);
513 EntrezAddToBooleanRequest (e2rq, NULL, 0, "AUTH", "Kans JA", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
514 EntrezAddToBooleanRequest (e2rq, NULL, ENTREZ_OP_AND, NULL, NULL, NULL, 0, 0, NULL, NULL, FALSE, FALSE);
515 EntrezAddToBooleanRequest (e2rq, NULL, 0, NULL, NULL, key3, 0, 0, NULL, NULL, FALSE, FALSE);
516 SaveEntrezRequest (e2rq);
517 e2ry = EntrezSynchronousQuery (e2rq);
518 e2rq = Entrez2RequestFree (e2rq);
519 if (e2ry != NULL) {
520 SaveEntrezReply (e2ry);
521 if (showuids) {
522 SaveBooleanIdList (e2ry); /* also frees e2ry */
523 } else {
524 Entrez2ReplyFree (e2ry);
525 }
526 } else {
527 printf ("Boolean request failed\n");
528 }
529
530 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 20, 0);
531 EntrezAddToBooleanRequest (e2rq, NULL, 0, "AUTH", "Kans JA", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
532 SaveEntrezRequest (e2rq);
533 e2ry = EntrezSynchronousQuery (e2rq);
534 e2rq = Entrez2RequestFree (e2rq);
535 if (e2ry != NULL) {
536 SaveEntrezReply (e2ry);
537 if (showuids) {
538 SaveBooleanIdList (e2ry); /* also frees e2ry */
539 } else {
540 Entrez2ReplyFree (e2ry);
541 }
542 } else {
543 printf ("Boolean request failed\n");
544 }
545
546 /*
547 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 0, 0);
548 EntrezAddToBooleanRequest (e2rq, NULL, ENTREZ_OP_LEFT_PAREN, NULL, NULL, NULL, 0, 0, NULL, NULL, FALSE, FALSE);
549 EntrezAddToBooleanRequest (e2rq, NULL, 0, "WORD", "immunit", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
550 EntrezAddToBooleanRequest (e2rq, NULL, ENTREZ_OP_RANGE, NULL, NULL, NULL, 0, 0, NULL, NULL, FALSE, FALSE);
551 EntrezAddToBooleanRequest (e2rq, NULL, 0, "WORD", "immunitarian", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
552 EntrezAddToBooleanRequest (e2rq, NULL, ENTREZ_OP_RIGHT_PAREN, NULL, NULL, NULL, 0, 0, NULL, NULL, FALSE, FALSE);
553 */
554 /*
555 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", "transposase* [WORD]", 0, 0, NULL, 0, 0);
556 */
557 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "PubMed", NULL, 0, 0, NULL, 0, 0);
558 EntrezAddToBooleanRequest (e2rq, NULL, 0, "WORD", "transposase*", NULL, 0, 0, NULL, NULL, FALSE, FALSE);
559 SaveEntrezRequest (e2rq);
560 e2ry = EntrezSynchronousQuery (e2rq);
561 e2rq = Entrez2RequestFree (e2rq);
562 if (e2ry != NULL) {
563 SaveEntrezReply (e2ry);
564 if (showuids) {
565 SaveBooleanIdList (e2ry); /* also frees e2ry */
566 } else {
567 Entrez2ReplyFree (e2ry);
568 }
569 } else {
570 printf ("Boolean request failed\n");
571 }
572
573 if (dohuge) {
574 str = "\"nucleotide all\"[filter] NOT ApoE";
575 e2rq = EntrezCreateBooleanRequest (TRUE, TRUE, "nucleotide", str, 0, 0, NULL, 0, 0);
576 SaveEntrezRequest (e2rq);
577 e2ry = EntrezSynchronousQuery (e2rq);
578 e2rq = Entrez2RequestFree (e2rq);
579 if (e2ry != NULL) {
580 SaveEntrezReply (e2ry);
581 if (showuids) {
582 SaveBooleanIdList (e2ry); /* also frees e2ry */
583 } else {
584 Entrez2ReplyFree (e2ry);
585 }
586 } else {
587 printf ("Boolean request failed\n");
588 }
589 }
590 }
591
592 /* Args structure contains command-line arguments */
593
594 #define v_argService 0
595 #define h_argHuge 1
596 #define u_argUids 2
597 #define g_argInfo 3
598 #define n_argNewTests 4
599
600 Args myargs [] = {
601 {"Service", NULL, NULL, NULL,
602 TRUE, 'v', ARG_STRING, 0.0, 0, NULL},
603 {"Do Huge Boolean Query", "F", NULL, NULL,
604 TRUE, 'h', ARG_BOOLEAN, 0.0, 0, NULL},
605 {"Show UID List", "F", NULL, NULL,
606 TRUE, 'u', ARG_BOOLEAN, 0.0, 0, NULL},
607 {"Show Get-Info Reply", "F", NULL, NULL,
608 TRUE, 'g', ARG_BOOLEAN, 0.0, 0, NULL},
609 {"New Tests", "F", NULL, NULL,
610 TRUE, 'n', ARG_BOOLEAN, 0.0, 0, NULL},
611 };
612
613 Int2 Main (void)
614
615 {
616 Boolean dohuge, newtests, showinfo, showuids;
617 CharPtr service;
618
619 /* standard setup */
620
621 ErrSetFatalLevel (SEV_MAX);
622 ErrClearOptFlags (EO_SHOW_USERSTR);
623 UseLocalAsnloadDataAndErrMsg ();
624 ErrPathReset ();
625
626 if (! AllObjLoad ()) {
627 Message (MSG_FATAL, "AllObjLoad failed");
628 return 1;
629 }
630 if (! SubmitAsnLoad ()) {
631 Message (MSG_FATAL, "SubmitAsnLoad failed");
632 return 1;
633 }
634 if (! FeatDefSetLoad ()) {
635 Message (MSG_FATAL, "FeatDefSetLoad failed");
636 return 1;
637 }
638 if (! SeqCodeSetLoad ()) {
639 Message (MSG_FATAL, "SeqCodeSetLoad failed");
640 return 1;
641 }
642 if (! GeneticCodeTableLoad ()) {
643 Message (MSG_FATAL, "GeneticCodeTableLoad failed");
644 return 1;
645 }
646
647 /* process command line arguments */
648
649 if (! GetArgs ("testent2", sizeof (myargs) / sizeof (Args), myargs)) {
650 return 0;
651 }
652
653 service = myargs [v_argService].strvalue;
654 dohuge = (Boolean) myargs [h_argHuge].intvalue;
655 showuids = (Boolean) myargs [u_argUids].intvalue;
656 showinfo = (Boolean) myargs [g_argInfo].intvalue;
657 newtests = (Boolean) myargs [n_argNewTests].intvalue;
658
659 if (! StringHasNoText (service)) {
660 EntrezSetService (service);
661 printf ("testent2 %s\n", service);
662 }
663
664 if (newtests) {
665 NewTextE2 (showuids, showinfo);
666 } else {
667 TestE2 (dohuge, showuids, showinfo);
668 }
669 printf ("testent2 finished\n");
670
671 return 0;
672 }
673
674
675 |
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