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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9921806          
refSNP ID: rs9921806
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_001040056.1:c.353+385G>A
NM_001109891.1:c.353+385G>A
NM_002746.2:c.353+385G>A
NT_010393.15:g.21445839C>T
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13760499 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9921806 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13760499BCM_SSAHASNP|chr16.NT_024812.10_1533674byFreqfwd/BC/Ttgacagttttctttctccctgtctcccttcggtctgggcaaggaggaaagagaggaaaga11/05/0310/25/06119Genomicunknown
ss74975668ILLUMINA|ILMN_Human_1M_rs9921806fwd/BC/Ttgacagttttctttctccctgtctcccttcggtctgggcaaggaggaaagagaggaaaga08/28/0708/29/07129Genomicunknown
ss80779580KRIBB_YJKIM|KHS1016607fwd/BC/Ttgacagttttctttctccctgtctcccttcggtctgggcaaggaggaaagagaggaaaga11/26/0711/26/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9921806|allelePos=501|totalLen=701|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 ctcccaaagt gttgggacta cagatgtgag ccattgcact cCACCCCTCA TCTTTGAAAT
 GAAGCTGAAA AGCCCATCTC ATAGGGTAGT TGGGAGGTGT AATAGAAAAA AAAAAGCATT
 GGGCATGTAT AGTACCTGAC ACACAGCAGG CCCTCAAGAA AGGCAGtttt ttgtttttgt
 ttagttttga gacagagtct cgctctgtca cccaggctgg agtgcagtgg cacgatcttg
 gctcactgca acctccagct cctgggttca agcgattctc ctacctctgc ctcccaagta
 gctgggatta caggcttgca ccaccatgcc ccgctaattt ttttgtattt ttagtagaga
 tggggtttaa ccatgttggc caggctggtc tccaactact gacctcaggt aatctcccac
 ctcagcctcc caaagtgctg ggattacagg cgtgagccac cacgcccagc tGACAGTTTT
 CTTTCTCCCT GTCTCCCTTC
 Y
 GGTCTGGGCA AGGAGGAAAG AGAGGAAAGA ATCATCCATT CCTTAGCAAG AAGTGACTGT
 GGGCAGAGGC CAGGTCATGT CTCAGAACTG CCGACGTCAG AAGACACCAC TCCCATAGAG
 ACCATCCTGC CTAGCCCTTC CCCCTGGGGC ACAGAGCAGA GAACCCACTT GCTCGAGGCC
 ATACTGCCTG GGCCGCTGCA

  GeneView back to top
GeneView via analysis of contig annotation: MAPK3 mitogen-activated protein kinase 3
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010393->NM_001040056
svfunction
referenceNT_010393->NM_001109891
svfunction
referenceNT_010393->NM_002746
svfunction
HuRefNW_001838235->NM_001040056
svfunction
HuRefNW_001838235->NM_001109891
svfunction
HuRefNW_001838235->NM_002746
svfunction
CeleraNW_926539->NM_001040056
svfunction
CeleraNW_926539->NM_001109891
svfunction
CeleraNW_926539->NM_002746
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010393->NM_001040056->NP_00103514521445839reverseintron
referenceNT_010393->NM_001109891->NP_00110336121445839reverseintron
referenceNT_010393->NM_002746->NP_00273721445839reverseintron
HuRefNW_001838235->NM_001040056->NP_00103514587806forwardintron
HuRefNW_001838235->NM_001109891->NP_00110336187806forwardintron
HuRefNW_001838235->NM_002746->NP_00273787806forwardintron
CeleraNW_926539->NM_001040056->NP_00103514569889forwardintron
CeleraNW_926539->NM_001109891->NP_00110336169889forwardintron
CeleraNW_926539->NM_002746->NP_00273769889forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9921806 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838235.28780627793893minusGalt_assembly_8HuRefHuRefview500
16NT_010393.152144583930040261plusCref_assemblyreferencereferenceview500
16NW_926539.16988972663289minusGalt_assembly_1CeleraCeleraview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_024812
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC012645.7 NC_000016.8 AC138954.1

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss13760499HapMap-CEUEuropean 120IG 1.000 1.000
HapMap-HCBAsian 90IG 0.622 0.356 0.022 0.479 0.800 0.200
HapMap-JPTAsian 88IG 0.568 0.432 0.100 0.784 0.216
HapMap-YRISub-Saharan African 120IG 1.000 1.000

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.161+/-0.23427021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqwithHapMapFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .