R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 222 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|9294064|dbj|BAB02021.1| (AB020749) DNA-dependent RNA polymerase II
[Arabidopsis thaliana]
Length = 1119
Frame 3 hits (HSPs): ________
Frame 1 hits (HSPs): _
__________________________________________________
Database sequence: | | | | | | | | | 1119
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 676 (238.0 bits), Expect = 2.5e-66, Sum P(2) = 2.5e-66
Identities = 135/166 (81%), Positives = 142/166 (85%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+KLKHTERG VQKVVLSSNDEGKNFA VSLRQVRSP LGDKFSSMHGQKGVLG+LE Q+N
Sbjct: 819 IKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQN 878
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC------GG------ILKQATP 329
FPFT QGIVPDIVINPHAFPSRQTPGQLLEAAL KGIAC G + + ATP
Sbjct: 879 FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATP 938
Query: 330 FSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
FSTP V ITEQLHRAGFSRWGNERVYNGR+GEM+RSLIFMGPTFY
Sbjct: 939 FSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFY 984
Score = 41 (14.4 bits), Expect = 2.5e-66, Sum P(2) = 2.5e-66
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 466 IIFMGPTF 489
+IFMGPTF
Sbjct: 976 LIFMGPTF 983
>gi|9293951|dbj|BAB01854.1| (AP000377) DNA-directed RNA polymerase, subunit B
[Arabidopsis thaliana]
Length = 1172
Frame 3 hits (HSPs): ________
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | | | 1172
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 676 (238.0 bits), Expect = 5.0e-66, Sum P(2) = 5.0e-66
Identities = 134/165 (81%), Positives = 142/165 (86%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+KLKHTERG VQKVVLSSNDEGKNFA VSLRQVRSP LGDKFSSMHGQKGVLG+LE Q+N
Sbjct: 873 IKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQN 932
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC-----GG------ILKQATPF 332
FPFT QGIVPDIVINPHAFPSRQTPGQLLEAAL KGIAC G + + ATPF
Sbjct: 933 FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPF 992
Query: 333 STPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
STP V ITEQLHRAGFSRWGNERVYNGR+GEM+RS+IFMGPTFY
Sbjct: 993 STPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFY 1037
Score = 40 (14.1 bits), Expect = 5.0e-66, Sum P(2) = 5.0e-66
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +1
Query: 466 IIFMGPTF 489
+IFMGPTF
Sbjct: 1029 MIFMGPTF 1036
>gi|3746594|gb|AAC64012.1| (AF064611) RNA polymerase II subunit 2 [Periploca
graeca]
Length = 260
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 415 (146.1 bits), Expect = 7.9e-38, P = 7.9e-38
Identities = 78/152 (51%), Positives = 106/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT++GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
R G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 RCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867797|emb|CAB43058.1| (AJ133222) RNA polymerase II [Anthocleista
grandiflora]
Length = 256
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 412 (145.0 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 78/152 (51%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 23 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 82
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 83 FTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 142
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
R G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 143 RCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 174
>gi|4867795|emb|CAB43060.1| (AJ133218) RNA polymerase II [Alstonia scholaris]
Length = 258
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
Plus Strand HSPs:
Score = 411 (144.7 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 85 FTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 145 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 176
>gi|4867858|emb|CAB43085.1| (AJ133219) RNA polymerase II [Stephanotis
floribunda]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 410 (144.3 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867895|emb|CAB43089.1| (AJ133220) RNA polymerase II [Wrightia arborea]
Length = 249
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 410 (144.3 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 14 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 73
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 74 FTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 133
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 134 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 165
>gi|4867815|emb|CAB43065.1| (AJ133223) RNA polymerase II [Fagraea sp.]
Length = 257
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 3.4e-37, P = 3.4e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 85 FTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 145 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 176
>gi|4867860|emb|CAB43081.1| (AJ133224) RNA polymerase II [Potalia resinifera]
Length = 249
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 3.4e-37, P = 3.4e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|3746592|gb|AAC64011.1| (AF064610) RNA polymerase II subunit 2 [Mostuea
brunonis]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.4e-37, P = 4.4e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 21 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 80
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 81 FTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 140
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 141 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 172
>gi|3746598|gb|AAC64014.1| (AF064613) RNA polymerase II subunit 2 [Kopsia
fruticosa]
Length = 259
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 259
0 50 100 150 200 250
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.4e-37, P = 4.4e-37
Identities = 75/152 (49%), Positives = 106/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 24 LRHSETGIVDQVLLTTNADGLRFVKVRMRSVRLPQIGDKFSSRHGQKGTIGMTYTQEDMP 83
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +G+ PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 84 WTLEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 143
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG ++ +IF+GPT+Y
Sbjct: 144 KCGYQMRGFERMYNGHTGRIMGDMIFLGPTYY 175
>gi|4867862|emb|CAB43072.1| (AJ133227) RNA polymerase II [Logania vaginalis]
Length = 262
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.4e-37, P = 4.4e-37
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 87 FTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867866|emb|CAB43074.1| (AJ133229) RNA polymerase II [Mitreola petiolata]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.4e-37, P = 4.4e-37
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 26 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 85
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 86 FTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 145
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 146 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 177
>gi|4867870|emb|CAB43084.1| (AJ133232) RNA polymerase II [Spigelia anthelmia]
Length = 260
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.4e-37, P = 4.4e-37
Identities = 76/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHNENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +G+ PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 85 FTXEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 145 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 176
>gi|4867817|emb|CAB43066.1| (AJ133226) RNA polymerase II [Gardneria
angustifolia]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 26 LRHSENGMVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMP 85
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 86 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 145
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 146 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 177
>gi|4867819|emb|CAB43068.1| (AJ133235) RNA polymerase II [Gardenia thunbergia]
Length = 269
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 269
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 28 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMP 87
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 88 FTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 147
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 148 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 179
>gi|4867872|emb|CAB43073.1| (AJ133236) RNA polymerase II [Mussaenda
erythrophylla]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867874|emb|CAB43077.1| (AJ133237) RNA polymerase II [Oldenlandia
corymbosa]
Length = 262
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 76/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R +R P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867876|emb|CAB43078.1| (AJ133238) RNA polymerase II [Ophiorrhiza mungos]
Length = 263
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 28 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 87
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 88 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 147
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 148 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 179
>gi|4867878|emb|CAB43080.1| (AJ133239) RNA polymerase II [Pinckneya pubescens]
Length = 263
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 28 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 87
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 88 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 147
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 148 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 179
>gi|4867880|emb|CAB43083.1| (AJ133240) RNA polymerase II [Rondeletia odorata]
Length = 261
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 26 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 85
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 86 FTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 145
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 146 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 177
>gi|4867897|emb|CAB43086.1| (AJ133231) RNA polymerase II [Strychnos potatorum]
Length = 263
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 87 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867899|emb|CAB43088.1| (AJ133233) RNA polymerase II [Usteria guineensis]
Length = 268
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 26 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 85
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 86 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 145
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 146 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 177
>gi|4867793|emb|CAB43061.1| (AJ133214) RNA polymerase II [Buddleja asiatica]
Length = 260
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 404 (142.2 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 75/152 (49%), Positives = 106/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 23 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 82
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T++GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 83 WTQEGICPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 142
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 143 KCGYQMRGYETMYNGHTGRRLPAMIFLGPTYY 174
>gi|4867799|emb|CAB43059.1| (AJ133225) RNA polymerase II [Antonia ovata]
Length = 262
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 404 (142.2 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 77/152 (50%), Positives = 102/152 (67%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF +VD I+ LH
Sbjct: 87 FTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEXDATPFXDVTVDNISRALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 XCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867807|emb|CAB43064.1| (AJ133234) RNA polymerase II [Chiococca racemosa]
Length = 267
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 267
0 50 100 150 200 250
Plus Strand HSPs:
Score = 404 (142.2 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 77/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 FTVEGINPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|4867813|emb|CAB43067.1| (AJ133221) RNA polymerase II [Gelsemium
sempervirens]
Length = 236
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 236
0 50 100 150 200
Plus Strand HSPs:
Score = 403 (141.9 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 77/152 (50%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 10 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 69
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI +NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 70 FTVEGITPDIXVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 129
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 130 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 161
>gi|4867864|emb|CAB43075.1| (AJ133228) RNA polymerase II [Mitrasacme pilosa]
Length = 242
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 242
0 50 100 150 200
Plus Strand HSPs:
Score = 402 (141.5 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 77/152 (50%), Positives = 102/152 (67%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHSENGXVDXVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Sbjct: 85 FTVEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + S IF+GP +Y
Sbjct: 145 KCGYQMRGFERMYNGHTGRPLTSTIFLGPXYY 176
>gi|11261330|pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [imported] - barley (fragment)
>gi|2736117|gb|AAB94059.1| (AF020839) RPB140 [Hordeum vulgare]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 401 (141.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 75/152 (49%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 392 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 451
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 452 WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDHISKALH 511
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 512 KCGYQMRGFETMYNGHTGRKLTAMIFLGPTYY 543
>gi|11261334|pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [imported] - Magnolia virginiana (fragment)
>gi|2736121|gb|AAB94061.1| (AF020841) RPB140 [Magnolia virginiana]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 401 (141.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 75/152 (49%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 392 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 451
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 452 WTPEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 511
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 512 KCGYQMRGFETMYNGHTGRRLPAMIFLGPTYY 543
>gi|3002819|gb|AAC08937.1| (AF041852) RPB140 [Chloranthus spicatus]
Length = 533
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
Plus Strand HSPs:
Score = 401 (141.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 75/152 (49%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 370 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMP 429
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 430 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 489
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 490 KCGYQMRGFETMYNGHTGRKLTAMIFLGPTYY 521
>gi|11261326|pir||T43844 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [imported] - ginkgo (fragment)
>gi|2736125|gb|AAB94063.1| (AF020843) RPB140 [Ginkgo biloba]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 400 (140.8 bits), Expect = 3.1e-36, P = 3.1e-36
Identities = 74/152 (48%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F + +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 392 LRHSESGMVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 451
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 452 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALH 511
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 512 KCGYQMRGFETMYNGHTGRKLSAMIFLGPTYY 543
>gi|4867856|emb|CAB43079.1| (AJ133217) RNA polymerase II [Peltanthera
floribunda]
Length = 260
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 400 (140.8 bits), Expect = 3.1e-36, P = 3.1e-36
Identities = 76/152 (50%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHSETGTVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 85 WTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + S+IF+GPT+Y
Sbjct: 145 KCGYQMRGFETMYNGHTGRRLTSMIFLGPTYY 176
>gi|3002941|gb|AAC08961.1| (AF043427) RNA polymerase II second largest subunit
[Nymphaea odorata]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 399 (140.5 bits), Expect = 3.9e-36, P = 3.9e-36
Identities = 75/152 (49%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G QE+ P
Sbjct: 392 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMP 451
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 452 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 511
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 512 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 543
>gi|4867854|emb|CAB43082.1| (AJ133215) RNA polymerase II [Retzia capensis]
Length = 256
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 399 (140.5 bits), Expect = 3.9e-36, P = 3.9e-36
Identities = 75/152 (49%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P GDKFSS HGQKG +G +QE+ P
Sbjct: 25 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQXGDKFSSRHGQKGTVGMTYTQEDMP 84
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 85 WTLEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALH 144
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 145 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 176
>gi|3746590|gb|AAC64010.1| (AF064609) RNA polymerase II subunit 2 [Kopsia
fruticosa]
Length = 269
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 269
0 50 100 150 200 250
Plus Strand HSPs:
Score = 398 (140.1 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 76/152 (50%), Positives = 103/152 (67%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 27 LRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSKHGQKGTIGMTYTQEDMP 86
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
T +GI PDI +NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 87 STAEGITPDISVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 146
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG + + IF+GPT+Y
Sbjct: 147 KCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 178
>gi|11261328|pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [imported] - spinach (fragment)
>gi|2736119|gb|AAB94060.1| (AF020840) RPB140 [Spinacia oleracea]
Length = 556
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 556
0 150 300 450
Plus Strand HSPs:
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 74/154 (48%), Positives = 105/154 (68%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+H+E G V +V+ ++N +G F V +R VR P +GDKFSS HGQKG +G +QE+
Sbjct: 391 ISLRHSETGMVDQVLPTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQED 450
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
P+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++
Sbjct: 451 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKA 510
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 511 LHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYY 544
>gi|2133437|pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain - Euplotes octocarinatus >gi|2654279|emb|CAA47069.1|
(X66453) DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Frame 3 hits (HSPs): _______
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | | | | 1194
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
PROSITE RNA_POL_BETA: RNA polymerases beta chain 951..963
__________________
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 8.4e-36, P = 8.4e-36
Identities = 74/152 (48%), Positives = 107/152 (70%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E+G + V+L+SN+EG +F V +R +R P +GDKF+S HGQKG +G QE+ P
Sbjct: 915 LRHSEKGIIDSVILTSNEEGDSFTKVKMRAIRIPQIGDKFASRHGQKGTVGMTYRQEDIP 974
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAC-GGILKQATPFSTPSVDAITEQL 368
FT++GI+PDI++NPHA PSR T G L+E K +AC G ATPF +V+ I+ L
Sbjct: 975 FTQEGIIPDIIVNPHAIPSRMTIGHLIECLASK-VACFKGEEGDATPFQDVTVEHISNDL 1033
Query: 369 HRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
HR G+ + GNE +Y+G TG + ++IF+GPT+Y
Sbjct: 1034 HRLGYQKRGNEVMYDGWTGRKMDTMIFLGPTYY 1066
>gi|3002939|gb|AAC08960.1| (AF043426) RNA polymerase II second largest subunit
[Peperomia caperata]
Length = 554
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 554
0 150 300 450
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 74/152 (48%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 391 LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 450
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++N HA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 451 WTAEGITPDIIVNQHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 510
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 511 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 542
>gi|421849|pir||S30229 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain - Arabidopsis thaliana >gi|16486|emb|CAA79528.1|
(Z19121) RNA polymerase II second largest subunit [Arabidopsis
thaliana]
Length = 1188
Frame 3 hits (HSPs): ________
Annotated Domains: _
__________________________________________________
Database sequence: | | | | | | | | | 1188
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
PROSITE RNA_POL_BETA: RNA polymerases beta chain 938..950
__________________
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 75/154 (48%), Positives = 107/154 (69%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+
Sbjct: 900 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
P+T +G+ PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++
Sbjct: 960 MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH+ G+ G ER+YNG TG + ++IF+GPT+Y
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYY 1053
>gi|585914|sp|P38420|RPB2_ARATH DNA-DIRECTED RNA POLYMERASE II 135 KDA
POLYPEPTIDE (RNA POLYMERASE II SUBUNIT 2) >gi|421848|pir||S30228
DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana >gi|16488|emb|CAA79527.1| (Z19120) RNA
polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Frame 3 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | | 1188
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
BLOCKS BL01166A: RNA polymerases beta chain pro 92..109
BLOCKS BL01166B: RNA polymerases beta chain pro 388..397
BLOCKS BL01166C: RNA polymerases beta chain pro 503..527
BLOCKS BL01166D: RNA polymerases beta chain pro 713..742
BLOCKS BL01166E: RNA polymerases beta chain pro 783..806
BLOCKS BL01166F: RNA polymerases beta chain pro 871..881
BLOCKS BL01166G: RNA polymerases beta chain pro 938..979
BLOCKS BL01166H: RNA polymerases beta chain pro 1046..1095
DOMO DM01030: DNA-DIRECTEDRNAPOLYMERASE132KPO 29..500
DOMO DM00241: DNA-DIRECTEDRNAPOLYMERASEBETACH 502..1178
Entrez Zinc finger region: C4-TYPE (POTENTIAL). 1124..1145
PFAM RNA_pol_B: RNA polymerase beta subunit 108..1120
PRODOM PD035519: Q42877(1) RPB2(1) 5..35
PRODOM PD001037: RPOB(39) RPB2(9) RPC2(3) 37..202
PRODOM PD009880: RPB2(4) Q27826(1) Q42877(1) 204..263
PRODOM PD003061: RPB2(10) RPOB(3) RPC2(3) 265..337
PRODOM PD007683: RPB2(6) O96236(1) Q42877(1) 339..370
PRODOM PD001006: RPOB(41) RPB2(10) RPC2(3) 378..539
PRODOM PD191078: Q42877(1) RPB2(1) 541..567
PRODOM PD144323: RPB1(6) RPB2(6) RPO2(5) 569..781
PRODOM PD001712: RPOB(39) RPB1(6) RPB2(6) 783..879
PRODOM PD000636: RPOB(49) RPB1(6) RPB2(6) 896..1000
PRODOM PD000748: RPOB(40) RPB1(6) RPB2(6) 1022..1171
__________________
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 75/154 (48%), Positives = 107/154 (69%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+
Sbjct: 900 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
P+T +G+ PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++
Sbjct: 960 MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH+ G+ G ER+YNG TG + ++IF+GPT+Y
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYY 1053
>gi|7434761|pir||T05846 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain - Arabidopsis thaliana >gi|4455279|emb|CAB36815.1|
(AL035527) DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana] >gi|7268968|emb|CAB81278.1|
(AL161555) DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana]
Length = 1188
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1188
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 75/154 (48%), Positives = 107/154 (69%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+
Sbjct: 900 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
P+T +G+ PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++
Sbjct: 960 MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1019
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH+ G+ G ER+YNG TG + ++IF+GPT+Y
Sbjct: 1020 LHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYY 1053
>gi|11261324|pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [imported] - liverwort (Marchantia polymorpha)
(fragment) >gi|2736127|gb|AAB94064.1| (AF020844) RPB140 [Marchantia
polymorpha]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 72/152 (47%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G + +V+L++N +G F + +R +R P +GDKFSS HGQKG +G +QE+ P
Sbjct: 392 LRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 451
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T++GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 452 WTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 511
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + + IF+GPT+Y
Sbjct: 512 KCGYQMRGFEVMYNGHTGRRLYAHIFLGPTYY 543
>gi|2736123|gb|AAB94062.1| (AF020842) RPB140 [Aristolochia gigantea]
Length = 555
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 389 (136.9 bits), Expect = 4.5e-35, P = 4.5e-35
Identities = 74/154 (48%), Positives = 102/154 (66%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+H+E G V +V+ ++N EG F + +R VR +GDKFSS HGQKG +G +QE+
Sbjct: 390 ISLRHSESGVVDQVLYTTNAEGLRFTKIRVRSVRILQIGDKFSSRHGQKGTVGMTYTQED 449
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
P+T GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I ++
Sbjct: 450 MPWTIDGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAEVGKEGDATPFTEVTVDGICKR 509
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH GF G E +YNG TG + ++IF+GPT+Y
Sbjct: 510 LHECGFQMRGFETMYNGHTGRRLPAMIFVGPTYY 543
>gi|3746596|gb|AAC64013.1| (AF064612) RNA polymerase II subunit 2 [Chironia
linoides]
Length = 256
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 389 (136.9 bits), Expect = 4.5e-35, P = 4.5e-35
Identities = 75/152 (49%), Positives = 101/152 (66%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 1 LHHSETGMVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMP 60
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I+ L
Sbjct: 61 FTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALP 120
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER++NG TG + IF+GPT+Y
Sbjct: 121 KCGYQMRGFERMFNGHTGRPFTATIFLGPTYY 152
>gi|11134656|sp|Q42877|RPB2_LYCES DNA-DIRECTED RNA POLYMERASE II 135 KDA
POLYPEPTIDE (RNA POLYMERASE II SUBUNIT 2) >gi|2129929|pir||S65068
DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
tomato >gi|1049068|gb|AAC49273.1| (U28403) RNA polymerase II
subunit 2 [Lycopersicon esculentum]
Length = 1191
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | | 1191
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 400 (140.8 bits), Expect = 6.0e-35, P = 6.0e-35
Identities = 75/152 (49%), Positives = 105/152 (69%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G +QE+ P
Sbjct: 901 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 960
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 961 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1020
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + ++IF+GPT+Y
Sbjct: 1021 KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 1052
>gi|4867893|emb|CAB43087.1| (AJ133216) RNA polymerase II [Sanango racemosum]
Length = 259
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 259
0 50 100 150 200 250
Plus Strand HSPs:
Score = 386 (135.9 bits), Expect = 9.3e-35, P = 9.3e-35
Identities = 74/152 (48%), Positives = 103/152 (67%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F V +R VR P +GD FSS HGQKG +G +QE+ P
Sbjct: 23 LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDXFSSRHGQKGTVGMTYTQEDMP 82
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NP A PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 83 WTVEGISPDIIVNPXAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 142
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G E +YNG TG + S+IF+GPT+Y
Sbjct: 143 KCGYQMRGFETMYNGHTGRRLTSMIFLGPTYY 174
>gi|7434755|pir||B71608 DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain - malaria parasite (Plasmodium falciparum)
>gi|3845258|gb|AAC71932.1| (AE001413) DNA-directed RNA polymerase
subunit 2 [Plasmodium falciparum]
Length = 1345
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 1345
0 500 1000
Plus Strand HSPs:
Score = 396 (139.4 bits), Expect = 2.0e-34, P = 2.0e-34
Identities = 75/154 (48%), Positives = 100/154 (64%), Frame = +3
Query: 6 VKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQEN 185
+ L+ E G + V+LSSN G FA V +R VR P +GDKF+S HGQKG +G E+
Sbjct: 1064 LSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTED 1123
Query: 186 FPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQ 365
PF+ GI PDI++NPHA PSR T G L+E GK A G ATPFS +V I+++
Sbjct: 1124 MPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQEISQK 1183
Query: 366 LHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
LH G+ ++GNE +YNG G M++S IF+GPT+Y
Sbjct: 1184 LHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYY 1217
>gi|3746600|gb|AAC64015.1| (AF064614) RNA polymerase II subunit 2 [Mostuea
brunonis]
Length = 255
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | | 255
0 50 100 150 200 250
Plus Strand HSPs:
Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
Identities = 70/152 (46%), Positives = 104/152 (68%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G F + ++ VR P +G+KF+S GQKG +G + E+ P
Sbjct: 21 LRHSETGVVDQVLLTTNADGLKFVKIRMKSVRIPQIGNKFTSRPGQKGTIGMTYTPEDMP 80
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
+T +GI PDI++NPHA PSR T GQL+E +GK A G ATPF+ +VD I++ LH
Sbjct: 81 WTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 140
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ G+ G ER+YNG TG ++ +IF+GPT+Y
Sbjct: 141 KCGYQMRGFERMYNGHTGRLMGDVIFLGPTYY 172
>gi|4867868|emb|CAB43076.1| (AJ133230) RNA polymerase II [Neuburgia
corynocarpum]
Length = 258
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
Plus Strand HSPs:
Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 71/152 (46%), Positives = 101/152 (66%), Frame = +3
Query: 12 LKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFP 191
L+H+E G V +V+L++N +G V +R VR P +GD+FSS HGQKG +G +QE+ P
Sbjct: 17 LRHSENGVVDQVLLTTNADGLRLVKVRVRSVRIPQIGDRFSSRHGQKGTVGMTYTQEDMP 76
Query: 192 FTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLH 371
FT +GI PD+++NPHA PSR T GQL+E + K A G ATPF+ +V+ I+ LH
Sbjct: 77 FTIEGITPDVIVNPHAIPSRMTIGQLIECIMHKVAAQMGKEGDATPFTDVTVENISRALH 136
Query: 372 RAGFSRWGNERVYNGRTGEMVRSLIFMGPTFY 467
+ + G ER+YNG TG + + IF+GPT+Y
Sbjct: 137 KCSYQMRGFERMYNGHTGRPLTATIFLGPTYY 168
WARNING: HSPs involving 222 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.320 0.139 0.413
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.150 0.624
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.160 0.579
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.154 0.521
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.343 0.151 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.148 0.536
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 163 163 10. 75 3 12 22 0.10 34
30 0.10 37
+2 0 163 162 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 163 162 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 163 163 10. 75 3 12 22 0.10 34
30 0.10 37
-2 0 163 163 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 163 162 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 272
No. of states in DFA: 594 (59 KB)
Total size of DFA: 219 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 176.36u 1.02s 177.38t Elapsed: 00:00:34
Total cpu time: 176.40u 1.05s 177.45t Elapsed: 00:00:34
Start: Wed Feb 6 09:47:43 2002 End: Wed Feb 6 09:48:17 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000