Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss748738	SC_JCM|AL138887.3_70723		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	07/27/00	10/10/03	83	Genomic			unknown
ss1109023	KWOK|OVLP-000804-248102		rev/B	C/T	atagacaaattcaaagacttaaactgcaat	tacttacaaaaagtagaattgattactgaa	09/02/00	10/10/03	86	Genomic			99 %
ss1703551	KWOK|OVLP-000925-491961		rev/B	C/T	atagacaaattcaaagacttaaactgcaat	tacttacaaaaagtagaattgattactgaa	10/05/00	10/10/03	87	Genomic			99 %
ss2094439	TSC-CSHL|TSC0807482		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	10/19/00	08/14/07	88	Genomic			95 %
ss2595785	SC_JCM|AL138887.5_67895		rev/B	C/T	atagacaaattcaaagacttaaactgcaat	tacttacaaaaagtagaattgattactgaa	11/03/00	10/10/03	89	Genomic			unknown
ss10276953	BCM_SSAHASNP|chr6.NT_007592.13_9304045		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	06/27/03	10/10/03	116	Genomic			unknown
ss11776671	WI_SSAHASNP|chr6.NT_007592.13_9304045		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	07/04/03	10/10/03	116	Genomic			unknown
ss22381923	SSAHASNP|WGSA-200403-chr6.chr6.NT_007592.13_9304045		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	03/21/04	03/21/04	121	Genomic			unknown
ss44753587	ABI|hCV1905968		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	07/19/05	07/19/05	126	Genomic			unknown
ss66182513	AFFY|SNP_A-2228544		fwd/T	A/G	ctactttttgtaagta	attgcagtttaagtct	10/27/06	08/14/07	127	Genomic			unknown
ss76249035	AFFY|AFFY_6_1M_SNP_A-2228544		fwd/T	A/G	ctactttttgtaagta	attgcagtttaagtct	08/28/07	08/30/07	129	Genomic			unknown
ss93407958	BCMHGSC_JDW|JWB-2104298		fwd/T	A/G	ttcagtaatcaattctactttttgtaagta	attgcagtttaagtctttgaatttgtctat	02/26/08	03/04/08	129	Genomic			unknown

Fasta sequence   (Legend)

 TAGTCTACTG AAACAGTTTT ATTTATTACA GCTGATAGTT AACTCAAGTG CATGGTGTTT
 CCCACAATAA TAAAAGTTCG TTTGATGTCT TTTTTGGCAC AATGGTGGAG AATGGCAGAA
 AAACCACTCC TGCTAGGACA GAGAATATAC AACAGAATCA AAAGCAAACT CAGCATATGT
 AATGCTGATG GTGCCAGTTG GGAAAACCAA GGGTTTTAAA TTGAGATTTT GAAATCTGAA
 GGCAATCATT AAGGTCAGAT GTGGTCTTTA GGTCTCATGG CAGTTTTATT TCCCAGAATG
 TTTCTGTTTC CCAGTAATAG TCAGAATACA GAAGTAGAAA ATAGTTTTAA ATAGCATTTC
 TTGCCTCGCA TAATTTACAT GAACATGCAG AGTCTCAAGA TCACATAGCT GTGGGGCTTT
 GCTTCAGTAA TCAATTCTAC TTTTTGTAAG TA
 R
 ATTGCAGTTT AAGTCTTTGA ATTTGTCTAT CTCTGATGTA AATATGTCAG AGTTAACCAC
 TTCTAAATCA TGTATAGTAA TATAAAATTT TGAAGGCACT ATTATTTAGG GGCTGACTTA
 CAGGGCCCTG GTTTCTCTTT TACTAGATTT CTGAACTTTT TCCCATC

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_007592->NM_182757 sv function
HuRef	NW_001838973->NM_182757 sv function
Celera	NW_922984->NM_182757 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss2094439	HapMap-CEU	European	120	IG	0.583	0.350	0.067		0.758	0.242
	HapMap-HCB	Asian	90	IG	0.533	0.422	0.044		0.744	0.256
	HapMap-JPT	Asian	90	IG	0.644	0.267	0.089		0.778	0.222
	HapMap-YRI	Sub-Saharan African	120	IG	0.667	0.267	0.067		0.800	0.200
ss66182513	HapMap-CEU	European	118	GF	0.576	0.356	0.068		0.754	0.246
	HapMap-HCB	Asian	90	GF	0.533	0.422	0.044		0.744	0.256
	HapMap-JPT	Asian	90	GF	0.644	0.267	0.089		0.778	0.222
	HapMap-YRI	Sub-Saharan African	120	GF	0.667	0.267	0.067		0.800	0.200

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN