| 11 proteins |
C | COG3794 | Plastocyanin | Help |
|---|
285 letters
1206 = VNG1637G (285) =
143 = VNG1188G (205) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= VNG1637G
(285 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
VNG1637G 469 e-132
VNG1188G 60 4e-09
VNG2196G 53 5e-07
VNG0586C 49 6e-06
VNG0573C 48 1e-05
VNG0249G 43 5e-04
sll0199 41 0.002
VNG0795G 38 0.013
mll5025 31 1.6
VNG0786G 31 2.1
Rv1060 31 2.1
mlr2489 30 3.6
VNG2482G 29 7.9
# >VNG1637G
# Length = 285
#
# Score = 469 bits (1206), Expect = e-132
# Identities = 229/285 (80%), Positives = 229/285 (80%)
#
# Query: 1 MSAMGRAPDRRTFLRSAVAGGLAAIAGCXXXXXXXXXXXXXXXXXXXXXPSEMSLHEWVT 60
# MSAMGRAPDRRTFLRSAVAGGLAAIAGC PSEMSLHEWVT
# Sbjct: 1 MSAMGRAPDRRTFLRSAVAGGLAAIAGCTDRTTTGTTNQQPTTTHTETQPSEMSLHEWVT 60
#
# Query: 61 SANTPESWTDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVD 120
# SANTPESWTDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVD
# Sbjct: 61 SANTPESWTDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVD 120
#
# Query: 121 SAFDSGDSXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEEYPTSGYPDVDRWLS 180
# SAFDSGDS IGTHRYVSEPDRESGMKGIIAVEEYPTSGYPDVDRWLS
# Sbjct: 121 SAFDSGDSTATEDHTFTHTFTEIGTHRYVSEPDRESGMKGIIAVEEYPTSGYPDVDRWLS 180
#
# Query: 181 PVHDYXXXXXXXXXXXXXXXXXXXXXQFDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKS 240
# PVHDY QFDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKS
# Sbjct: 181 PVHDYDGTVVTDTTTVTVGDTSSGSTQFDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKS 240
#
# Query: 241 AAIGIQELRSEPGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE 285
# AAIGIQELRSEPGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE
# Sbjct: 241 AAIGIQELRSEPGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE 285
#
#
# >VNG1188G
# Length = 205
#
# Score = 59.7 bits (143), Expect = 4e-09
# Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
#
# Query: 54 SLHEWVTSANTPESWTDHRG--DATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYG 111
# S+ +W+ + + D G + TV + V + Y F PA RV PGTTVT+EW
# Sbjct: 40 SIDDWLGDVSNYDGVRDETGSSEVTVDVGVDANGGAYGFGPAAVRVDPGTTVTFEWV--S 97
#
# Query: 112 GAHNVIAVDSAFDSGD-----SXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEE 166
# HNV AV+S DS D G + Y P R GMKG + V +
# Sbjct: 98 NTHNV-AVESQPDSADWGGVEEINNEGYTDSHTFETAGVYTYFCSPHRAMGMKGAVVVGD 156
#
# Query: 167 YPTSG 171
# G
# Sbjct: 157 ADVGG 161
#
#
#
# Score = 59.7 bits (143), Expect = 4e-09
# Identities = 31/82 (37%), Positives = 46/82 (55%), Gaps = 10/82 (12%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKSAAI-----GIQELRSEPGVHVTHTFNS 262
# F P ++V GTTV ++W HNVA +S G++E+ +E G +HTF +
# Sbjct: 78 FGPAAVRVDPGTTVTFEWVSN----THNVAVESQPDSADWGGVEEINNE-GYTDSHTFET 132
#
# Query: 263 TGTYRYFCSPHSELSGRGAIIV 284
# G Y YFCSPH + +GA++V
# Sbjct: 133 AGVYTYFCSPHRAMGMKGAVVV 154
#
#
# >VNG2196G
# Length = 288
#
# Score = 52.8 bits (125), Expect = 5e-07
# Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKSAAIGIQELRSEP----GVHVTHTFNST 263
# F P ++V GTTV ++W HN+ + G +P G THTF++
# Sbjct: 84 FGPAAVRVDPGTTVSFEWVSN----THNILIDAQPDGADWGGHDPIENTGFTHTHTFDTE 139
#
# Query: 264 GTYRYFCSPHSELSGRGAIIV 284
# G Y Y+C+PH + +GAI+V
# Sbjct: 140 GVYTYYCNPHLTMGMKGAIVV 160
#
#
#
# Score = 47.4 bits (111), Expect = 2e-05
# Identities = 30/101 (29%), Positives = 42/101 (40%), Gaps = 8/101 (7%)
#
# Query: 74 DATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVDSAFDSG-----DS 128
# + T+ + V + Y F PA RV PGTTV++EW HN++ +D+ D D
# Sbjct: 68 EVTIDVGVDANGGTYGFGPAAVRVDPGTTVSFEWV--SNTHNIL-IDAQPDGADWGGHDP 124
#
# Query: 129 XXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEEYPT 169
# G + Y P GMKG I V P+
# Sbjct: 125 IENTGFTHTHTFDTEGVYTYYCNPHLTMGMKGAIVVGAPPS 165
#
#
# >VNG0586C
# Length = 229
#
# Score = 49.3 bits (116), Expect = 6e-06
# Identities = 49/181 (27%), Positives = 64/181 (35%), Gaps = 14/181 (7%)
#
# Query: 10 RRTFLRSAV--AGGLAAIAGCXXXXXXXXXXXXXXX---XXXXXXPSEMSLHEWVTSANT 64
# RR FL+ A AGG AA+ + S T+A
# Sbjct: 3 RRDFLKIATGSAGGAAAVGAVGARSSSSSSAVHQQAPGNATGNGTAMDNSTAGNETAAGG 62
#
# Query: 65 PESWTDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVDSAFD 124
# D G AT G + F PA V+PG TV W W G G HNV A +
# Sbjct: 63 DSESGDGGGGATTKTVKVGPNNQNVFDPAEVYVSPGDTVKWVWEGSTG-HNVHATSVPDE 121
#
# Query: 125 SG-----DSXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEE---YPTSGYPDVD 176
# +G + G + YV +P + GMKG + V E P+ G V+
# Sbjct: 122 AGWDAQTEIVSAPHEYSHTFEGPTGEYSYVCDPHKSLGMKGKVIVNENGQAPSGGGGPVE 181
#
# Query: 177 R 177
# R
# Sbjct: 182 R 182
#
#
#
# Score = 48.9 bits (115), Expect = 7e-06
# Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKSAA--IGIQELRSEPGVHVTHTFNS-TG 264
# FDP + V G TV+W W G H + A E+ S P + +HTF TG
# Sbjct: 88 FDPAEVYVSPGDTVKWVWEGSTGHNVHATSVPDEAGWDAQTEIVSAPHEY-SHTFEGPTG 146
#
# Query: 265 TYRYFCSPHSELSGRGAIIV 284
# Y Y C PH L +G +IV
# Sbjct: 147 EYSYVCDPHKSLGMKGKVIV 166
#
#
# >VNG0573C
# Length = 230
#
# Score = 48.1 bits (113), Expect = 1e-05
# Identities = 33/82 (40%), Positives = 42/82 (50%), Gaps = 9/82 (10%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKS----AAIGIQELRSEPGVHVTHTFNS- 262
# F P + V GT V++ W ESGG HNV A G+ + P THTF+
# Sbjct: 105 FKPAEMYVKPGTKVRFVW---ESGG-HNVHATEVPGDADWGVSTDIAGPPKEYTHTFDGP 160
#
# Query: 263 TGTYRYFCSPHSELSGRGAIIV 284
# TG Y Y C+PH+ L +G IIV
# Sbjct: 161 TGEYNYVCTPHASLGMKGTIIV 182
#
#
#
# Score = 41.2 bits (95), Expect = 0.002
# Identities = 36/123 (29%), Positives = 47/123 (37%), Gaps = 12/123 (9%)
#
# Query: 60 TSANTPESWTDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAV 119
# T+A D G+ V + G ++ F+PA V PGT V + W G HNV A
# Sbjct: 78 TAAAAEGEGGDGGGEKVVKVGPNGSNV---FKPAEMYVKPGTKVRFVWES--GGHNVHAT 132
#
# Query: 120 DSAFD-----SGDSXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEEYP--TSGY 172
# + D S D G + YV P GMKG I V + P GY
# Sbjct: 133 EVPGDADWGVSTDIAGPPKEYTHTFDGPTGEYNYVCTPHASLGMKGTIIVTDSPPENKGY 192
#
# Query: 173 PDV 175
# +
# Sbjct: 193 QTI 195
#
#
# >VNG0249G
# Length = 810
#
# Score = 42.7 bits (99), Expect = 5e-04
# Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVA------------FKSAAIGIQELRSE---- 251
# +DP L V G TV W A G AH+V + S Q+
# Sbjct: 713 YDPAELTVSAGDTVAWTHA---DGEAHSVTAYEDDIPADATYWASGGFDSQDAAKTGWAN 769
#
# Query: 252 ------PGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE 285
# G HTF +TG + Y+C PH L G I+VE
# Sbjct: 770 GKGAVTEGESYVHTFETTGEHEYYCIPHKNLGMEGTIVVE 809
#
#
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
#
# Query: 89 AFQPALTRVAPGTTVTWEWTGYGGAHNVIAVDS------------AFDSGDSXXXXXXXX 136
# A+ PA V+ G TV W G AH+V A + FDS D+
# Sbjct: 712 AYDPAELTVSAGDTVAWTHAD-GEAHSVTAYEDDIPADATYWASGGFDSQDAAKTGWANG 770
#
# Query: 137 XXXXX----------XIGTHRYVSEPDRESGMKGIIAVEE 166
# G H Y P + GM+G I VEE
# Sbjct: 771 KGAVTEGESYVHTFETTGEHEYYCIPHKNLGMEGTIVVEE 810
#
#
# >sll0199
# Length = 126
#
# Score = 40.8 bits (94), Expect = 0.002
# Identities = 24/86 (27%), Positives = 35/86 (39%), Gaps = 11/86 (12%)
#
# Query: 208 FDPLVLKVPEGTTVQWKWAGEESGGAHNVAFKS--------AAIGIQELRSEPGVHVTHT 259
# F+P + + G V+W HN+ F + A + + L G T T
# Sbjct: 44 FEPSTVTIKAGEEVKWV---NNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTST 100
#
# Query: 260 FNSTGTYRYFCSPHSELSGRGAIIVE 285
# F GTY Y+C PH G ++VE
# Sbjct: 101 FTEPGTYTYYCEPHRGAGMVGKVVVE 126
#
#
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 25/105 (23%), Positives = 37/105 (34%), Gaps = 21/105 (20%)
#
# Query: 75 ATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWTGYGGAHNVIAVDS------------- 121
# A ++ +G F+P+ + G V W + V A D
# Sbjct: 29 ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKG 88
#
# Query: 122 -AFDSGDSXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVE 165
# AF +G+S GT+ Y EP R +GM G + VE
# Sbjct: 89 LAFAAGESFTSTFTEP-------GTYTYYCEPHRGAGMVGKVVVE 126
#
#
# >VNG0795G
# Length = 157
#
# Score = 38.1 bits (87), Expect = 0.013
# Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 22/97 (22%)
#
# Query: 207 QFDPLVLKVPEGTTVQWKWAGEESGGAHNVA----------FKSAAIGIQELRSE----- 251
# +F+P L V G TV W++ EES +HNV+ A G + +
# Sbjct: 64 KFEPSELTVSVGDTVTWEF--EES--SHNVSAWPDMHDKISIPDGASGFGTMDKDGNQFA 119
#
# Query: 252 ---PGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE 285
# G + HTF + G Y Y C PH G ++VE
# Sbjct: 120 VVDAGETLEHTFETAGEYTYVCMPHVASGMIGTVVVE 156
#
#
#
# Score = 33.5 bits (75), Expect = 0.32
# Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
#
# Query: 73 GDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEW-------TGYGGAHNVIAVD---SA 122
# G T+++A G + F+P+ V+ G TVTWE+ + + H+ I++ S
# Sbjct: 51 GGNTIAVAPDGG---FKFEPSELTVSVGDTVTWEFEESSHNVSAWPDMHDKISIPDGASG 107
#
# Query: 123 FDSGD------SXXXXXXXXXXXXXXIGTHRYVSEPDRESGMKGIIAVEE 166
# F + D + G + YV P SGM G + VEE
# Sbjct: 108 FGTMDKDGNQFAVVDAGETLEHTFETAGEYTYVCMPHVASGMIGTVVVEE 157
#
#
# >mll5025
# Length = 388
#
# Score = 31.2 bits (69), Expect = 1.6
# Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
#
# Query: 74 DATVSIAVGGHDLPYAFQPALTRVAPG-----TTVTWEWTGYGGAHNVIAVDSAFDSG 126
# DA ++ + G DLP A + AL PG + + GY GA + + AFD+G
# Sbjct: 256 DAHGNVKLSGSDLPAALERALAEGLPGKRARVDALGYMPRGYVGAISAVDAQEAFDAG 313
#
#
# >VNG0786G
# Length = 149
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 13/34 (38%), Positives = 16/34 (46%)
#
# Query: 252 PGVHVTHTFNSTGTYRYFCSPHSELSGRGAIIVE 285
# PG T G Y YFC PH RG ++V+
# Sbjct: 115 PGATYEVTLTVPGEYYYFCIPHEGAGMRGKLVVD 148
#
#
# >Rv1060
# Length = 157
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 10/58 (17%)
#
# Query: 55 LHEWVTSANTPESW----TDHRGDATVSIAVGGHDLPYAFQPALTRVAPGTTVTWEWT 108
# + E +TS + P S+ TD +G +A+ + ++F PA T GTTVTW+WT
# Sbjct: 70 VREELTSVDPPRSFGYTLTDIKGPLAPLVALV--EGKWSFAPADT----GTTVTWQWT 121
#
#
# >mlr2489
# Length = 398
#
# Score = 30.0 bits (66), Expect = 3.6
# Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
#
# Query: 212 VLKVPEGTTVQWKWAGEESGGAHNVAFKSAAIGIQELRSEP---GVHVTHTFNSTG 264
# +L + +GT ++ + G V F +A G QE+ ++P G VT TF G
# Sbjct: 13 LLVLADGTVIEGRGLGATGSAVAEVCFNTALTGYQEILTDPSYAGQIVTFTFPHIG 68
#
#
# >VNG2482G
# Length = 345
#
# Score = 28.9 bits (63), Expect = 7.9
# Identities = 28/114 (24%), Positives = 39/114 (33%), Gaps = 10/114 (8%)
#
# Query: 1 MSAMGRAPDRRTFLRSAVAGGLAAIAGCXXXXXXXXXXXXXXXXXXXXXPSEMSLHEWVT 60
# MS ++ RR+ RS AA AG P E+ E
# Sbjct: 1 MSDTPQSEPRRSDDRSGADDATAAAAGSTDAAAAAVSSKTGGIAGPPGGPGEVDGDEPAV 60
#
# Query: 61 SANTPES-------WTDHRGDATVSIAVGGHDLPYAFQPALTRVA---PGTTVT 104
# + ES WTD+ D ++V D Y + AL V+ P +VT
# Sbjct: 61 ARTVGESDEQLQDAWTDYEFDGDAKVSVSDLDTYYGEERALESVSLDIPAESVT 114
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.315 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,403,195
Number of Sequences: 108091
Number of extensions: 551779
Number of successful extensions: 1143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 21
length of query: 285
length of database: 33,061,072
effective HSP length: 105
effective length of query: 180
effective length of database: 21,711,517
effective search space: 3908073060
effective search space used: 3908073060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)