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2003

Absolon, R. F., D. A. Brege. 2003. Canister for releasing marked fish at depth in hydroelectric dam gatewells and forebays. North American Journal of Fisheries Management, 23:605-610.

Achord, S., P. S. Levin, R. W. Zabel. 2003. Density-dependent mortality in Pacific salmon: the ghost of impacts past? Ecology Letters, 6:335-342.

Alcorn, S. W., R. J. Pascho, A. L. Murray, K. D. Shearer. 2003. Effects of ration level on immune functions in chinook salmon (Oncorhynchus tshawytscha). Aquaculture, 217:529-545.

Ando, H., P. Swanson, A. Urano. 2003. Regulation of LH synthesis and release by GnRH and gonadal steroids in masu salmon. Fish Physiology and Biochemistry, 28:61-63.

Baker, J., P. Moran, R. Ladley. 2003. Nuclear DNA identification of migrating bull trout captured at the Puget Sound energy diversion dam on the White River, Washington State. Molecular Ecology, 12:557-561.

Baldwin, D. H., J. F. Sandahl, J. S. Labenia, N. L. Scholz. 2003. Sublethal effects of copper on coho salmon: impacts on nonoverlapping receptor pathways in the peripheral olfactory nervous system. Environmental Toxicology and Chemistry, 22(10):2266-2274.

Barron, M. G., R. Heintz, M. M. Krahn. 2003. Contaminant exposure and effects in pinnipeds: implications for Steller sea lion declines in Alaska. Science of the Total Environment, 311:111-133.

Beckman, B. R., D. A. Larsen, W. W. Dickhoff. 2003. Life history plasticity in chinook salmon: relation of size and growth rate to autumnal smolting. Aquaculture, 222:149-165.

Beckmen, K. B., J. E. Blake, G. M. Ylitalo, J. L. Stott, T. M. O'Hara. 2003. Organochlorine contaminant exposure and associations with hematological and humoral immune functional assays with dam age as a factor in free-ranging northern fur seal pups (Callorhinus ursinus). Marine Pollution Bulletin, 46:594-606.

Berejikian, B. A., W. T. Fairgrieve, P. Swanson, E. P. Tezak. 2003. Current velocity and injection of GnRHa affect reproductive behavior and body composition of captively reared offspring of wild chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 60:690-699.

Berejikian, B. A., E. P. Tezak, A. LaRae. 2003. Innate and enhanced predator recognition in hatchery-reared chinook salmon (Oncorhynchus tshawytscha). Environmental Biology of Fishes, 67:241-251.

Brodeur, R. D., W. G. Pearcy, S. Ralston. 2003. Abundance and distribution patterns of nekton and micronekton in the Northern California Current Transition Zone. Journal of Oceanography, 59:515-535.

Brodeur, R. D., J. P. Fisher, Y. Ueno, K. Nagasawa, W. G. Pearcy. 2003. An east-west comparison of the Transition Zone coastal pelagic nekton of the North Pacific Ocean. Journal of Oceanography, 59:415-434.

Brodeur, R. D., K. W. Myers, J. H. Helle. 2003. Research conducted by the United States on the early ocean life history of Pacific salmon. North Pacific Anadromous Fish Commission Bulletin, 3:89-131.

Brooks, K. M., A. R. Stierns, C. V. Mahnken, D. B. Blackburn. 2003. Chemical and biological remediation of the benthos near Atlantic salmon farms. Aquaculture, 219:355-377.

Brooks, K. M., C. V. Mahnken. 2003. Interactions of Atlantic salmon in the Pacific Northwest environment: III. Accumulation of zinc and copper. Fisheries Research, 62:295-305.

Brooks, K. M., C. V. Mahnken. 2003. Interactions of Atlantic salmon in the Pacific northwest environment: II. Organic wastes. Fisheries Research, 62:255-293.

Campbell, B., J. T. Dickey, B. R. Beckman, G. Young, A. L. Pierce, P. Swanson. 2003. Endocrine changes associated with the growth of pre-vitellogenic oocytes in coho salmon, Oncorhynchus kisutch. Fish Physiology and Biochemistry, 28:287-289.

Campbell, B., J. T. Dickey, P. Swanson. 2003. Endocrine changes during onset of puberty in male spring chinook salmon, Oncorhynchus tshawytscha. Biology of Reproduction, 69:2109-2117.

Collier, T. K., S. M. Adams. 2003. Establishing causal relationships between environmental stressors and biological effects in field studies. Human and Ecological Risk Assessment, 9:15.

Collier, T. K. 2003. Forensic ecotoxicology: Establishing causality between contaminants and biological effects in field studies. Human and Ecological Risk Assessment, 9:259-266.

Cook, M. A., M. B. Rust, K. C. Massee, T. J. Majack, M. E. Peterson. 2003. Uptake of erythromycin by first-feeding sockeye salmon, Oncorhynchus nerka (Walbaum), fed live or freeze-dried enriched adult Artemia or medicated pellets. Journal of Fish Diseases, 26:277-285.

De Robertis, A. C., J. S. Jaffe. 2003. Acoustic observations of the swimming behavior of the euphausiid Euphausia pacifica Hansen. ICES Journal of Marine Science, 60:885-898.

De Robertis, A. C., C. H. Ryer, A. Veloza, R. D. Brodeur. 2003. Differential effects of turbidity on prey consumption of piscivorous and planktivorous fish. Canadian Journal of Fisheries and Aquatic Sciences, 60:1517-1526.

Fairgrieve, W. T., M. B. Rust. 2003. Interactions of Atlantic salmon in the Pacific northwest: V. Human health and safety. Fisheries Research, 62:329-338.

Feinberg, L., W. T. Peterson. 2003. Variability in duration and intensity of euphausiid spawning off central Oregon, 1996-2001. Progress in Oceanography, 57:363-379.

Feist, B. E., E. A. Steel, G. R. Pess, R. E. Bilby. 2003. The influence of scale on salmon habitat restoration priorities. Animal Conservation, 6:271-282.

Fresh, K. L., S. L. Schroder. 2003. Predation by northern pikeminnow on hatchery and wild coho salmon smolts in the Chehalis River, Washington. North American Journal of Fisheries Management, 23:1257-1264.

Frick, K. 2003. Response in nematocyst uptake by the nudibranch Flabellina verrucosa to the presence of various predators in the southern Gulf of Maine. Biological Bulletin, 205:367-376.

Fukada, H., J. T. Dickey, A. L. Pierce, N. Hodges, A. Hara, P. Swanson, W. W. Dickhoff. 2003. Gene expression levels of growth hormone receptor and insulin-like growth factor-I in gonads of maturing coho salmon (Oncorhynchus kisutch)., 28:335-336.

Gardner, S. C., U. Varanasi. 2003. Isovaleric acid accumulation in odontocete melon during development. Naturwissenschaften, 90:528-531.

Gertseva, V. V., V. I. Gertsev, N. Y. Ponomarev. 2003. Tropho-ethological polymorphism of fish as a strategy of habitat development: a simulation model. Ecological Modelling, 167:159-164.

Gomez-Gutierrez, J., W. T. Peterson, A. C. De Robertis, R. D. Brodeur. 2003. Mass mortality of krill caused by parasitoid ciliates. Science, 301(5631):339.

Good, T. P., T. K. Harms, M. H. Ruckelshaus. 2003. Misuse of checklist assessments in endangered species recovery efforts. Conservation Ecology, 7(2):12, online .

Greene, C. M. 2003. Habitat selection reduces extinction of populations subject to Allee effects. Theoretical Population Biology, 64:1-10.

Grulke, N., R. B. Johnson, A. Esperanza, D. Jones, T. Nguyen, S. Posch, M. Tausz. 2003. Canopy transpiration of Jeffrey pine in mesic and xeric microsites: O3 uptake and injury response. Trees, 17(4):292-298.

Grulke, N., R. B. Johnson, S. Monschein, P. Nikolova, M. Tausz. 2003. Complex patterns of morphological, chemical, and biochemical O3 injury attributes of Jeffrey pine as governed by microsite and canopy position. Tree Physiology, 23:923-929.

Harmon, J. R. 2003. A Trap for Handling Adult Anadromous Salmonids at Lower Granite Dam on the Snake River, Washington. North American Journal of Fisheries Management, 23:989-992.

Hey, J., R. S. Waples, M. L. Arnold, R. K. Butlin, R. G. Harrison. 2003. Understanding and confronting species uncertainty in biology and conservation. Trends in Ecology and Evolution, 18:597-603.

Hockersmith, E. E., W. D. Muir, S. G. Smith, B. P. Sandford, R. W. Perry, N. S. Adams, D. W. Rondorf. 2003. Comparison of migration rate and survival between radio-tagged and PIT-tagged migrant yearling chinook salmon in the snake and Columbia rivers. North American Journal of Fisheries Management, 23:404-413.

Holmes, E. E., A. E. York. 2003. Using age structure to detect impacts on threatened populations: A case study with steller sea lions Using age structure to detect impacts on threatened populations: A case study with steller sea lions. Conservation Biology, 17:1794-1806.

Hopkins, W. A., C. P. Tatara, H. A. Brant, C. H. Jagoe. 2003. Relationships between mercury body concentrations, standard metabolic rate, and body mass in eastern mosquitofish (Gambusia holbrooki) from three experimental populations. Environmental Toxicology and Chemistry, 22:586-590.

Jacobson, K. C., M. R. Arkoosh, A. N. Kagley, E. R. Clemons, T. K. Collier, E. Casillas. 2003. Cumulative effects of natural and anthropogenic stress on immune function and disease resistance in juvenile chinook salmon. Journal of Aquatic Animal Health, 15:1-12.

Johnson, J. B., J. T. Silverstein, W. R. Wolters, M. Shimizu, W. W. Dickhoff, B. S. Shepherd. 2003. Disparate regulation of insulin-like growth factor-binding proteins in a primitive, ictalurid, teleost (Ictalurus punctatus). General and Comparative Endocrinology, 134:122-130.

Johnson, J. B., A. L. Basolo. 2003. Predator exposure alters female mate choice in the green swordtail. Behavioral Ecology, 14:619-625.

Johnson, R., H. Barnett. 2003. Determination of fat content in fish feed by supercritical fluid extraction and subsequent lipid classification of extract by thin layer chromatography- flame ionization detection. Aquaculture, 216:263-282.

Kagley, A. N., R. G. Snider, P. K. Krishnakumar, E. Casillas. 2003. Assessment of seasonal variability of cytochemical responses to contaminant exposure in the blue mussel Mytilus edulis (complex). Archives of Environmental Contamination and Toxicology, 44:43-52.

Keister, J. E., W. T. Peterson. 2003. Zonal and seasonal variations in zooplankton community structure off the central Oregon coast, 1998-2000. Progress in Oceanography, 57:341-361.

Kiffney, P. M., J. S. Richardson, J. P. Bull. 2003. Responses of periphyton and insect consumers to experimental manipulation of riparian buffer width along headwater streams. Journal of the American Water Resources Association, 40:1060-1076.

Kochin, B. F. 2003. Lack of concern deepens the oceans' problems. Nature, 424(6950):723-723.

Krahn, M. M., G. M. Ylitalo, J. E. Stein, A. Aguilar, A. Borrell. 2003. Organochlorine contaminants in cetaceans: how to facilitate interpretation and avoid errors when comparing datasets. Journal of Cetacean Research and Management, 5:103-113.

Lai, H., T. E. Helser. 2003. Linear mixed-effects models for weight-length relationships. Fisheries Research, 70:367-376.

Leslie, H., M. H. Ruckelshaus, I. R. Ball, S. Andelman, H. P. Possingham. 2003. Using siting algorithms in the design of marine reserve networks. Ecological Applications, 13(1 Suppl.):S185-S198.

Levin, P. S. 2003. Regional differences in responses of Pacific Salmon to large-scale climate patterns. Journal of Biogeography, 30:711-717.

Levin, P. S., M. E. Hay. 2003. Selection of estuarine habitats by juvenile gags in experimental mesocosms. Transactions of the American Fisheries Society, 132:76-83.

Logerwell, E. A., N. Mantua, P. W. Lawson, R. C. Francis, V. N. Agostini. 2003. Tracking environmental processes in the coastal zone for understanding and predicting Oregon coho (Oncorhynchus kisutch) marine survival. Fisheries Oceanography, 12:554-568.

Matter, A. L., B. P. Sandford. 2003. A Comparison of Migration Rates of Radio- and PIT-Tagged Adult Snake River Chinook Salmon through the Columbia River Hydropower System. North American Journal of Fisheries Management, 23:967-973.

McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13:964-989. (Pre-Press Word | PDF)

McClure, M. M., A. R. McCune. 2003. Evidence for developmental linkage of pigment patterns with body size and shape in Danios (Teleostei: Cyprinidae). Evolution, 57:1863-1875.

Moore, M. M., M. S. Strom. 2003. Infection and mortality by the yeast Metschnikowia bicuspidata var. bicuspidata in chinook salmon fed live adult California brine shrimp (Artemia franciscana). Aquaculture, 220:43-57.

Moore, S. E., J. M. Grebmeier, J. R. Davies. 2003. Gray whale distribution relative to forage habitat in the northern Bering Sea: current conditions and retrospective summary. Canadian Journal of Zoology, 81:734-742.

Moran, P. 2003. New molecular methods represent a paradigm shift. SETAC Globe, 4:42-43.

Morgan, C. A., W. T. Peterson, R. L. Emmett. 2003. Onshore-offshore variations in copepod community structure off the Oregon coast during the summer upwelling season. Marine Ecology Progress Series, 249:223-236.

Moser, M. L., D. A. Close. 2003. Assessing Pacific lamprey status in the Columbia River Basin. Northwest Science, 77:116-125.

Murray, A. L., R. J. Pascho, S. W. Alcorn, W. T. Fairgrieve, K. D. Shearer, D. Roley. 2003. Effects of various feed supplements containing fish protein hydrolysate or fish processing by-products on the innate immune functions of juvenile coho salmon (Oncorhynchus kisutch). Aquaculture, 220:643-653.

Myers, M. S., L. L. Johnson, T. K. Collier. 2003. Establishing the causal relationship between polycyclic aromatic hydrocarbon (PAH) exposure and hepatic neoplasms and neoplasia-related liver lesions in English sole (Pleuronectes vetulus). Human and Ecological Risk Assessment, 9:67-94.

Nash, C. E., F. W. Waknitz. 2003. Interactions of Atlantic salmon in the Pacific Northwest: I. Salmon enhancement and the net-pen farming industry. Fisheries Research, 62:237-254.

Nash, C. E. 2003. Interactions of Atlantic salmon in the Pacific Northwest: VI. A synopsis of the risk and uncertainty. Fisheries Research, 62:339-347.

Nilsson, W. B., R. N. Paranjpye, A. DePaola, M. S. Strom. 2003. Sequence polymorphisms in the 16S rRNA gene of Vibrio vulnificus is a possible indicator of strain virulence. Journal of Clinical Microbiology, 41:442-446.

Noren, D. P., D. E. Crocker, T. M. Williams, D. P. Costa. 2003. Energy reserve utilization in northern elephant seal (Mirounga angustirostris) pups during the postweaning fast: size does matter. Journal of Comparative Physiology, B, 173:443-454.

Paranjpye, R. N., F. T. Poysky, M. E. Peterson, G. A. Pelroy, M. W. Eklund. 2003. Incidence of Clostridium botulinum in whole pollock,fillets, mince and surimi. Journal of Aquatic Food Product Technology, 12:5-15.

Parrish, J. K., R. Bailey, A. Copping, J. E. Stein. 2003. The Pacific Northwest coastal ecosystems regional study. Estuaries, 26(4B):991-993.

Peterson, W. T., F. B. Schwing. 2003. A new climate regime in northeast pacific ecosystems. Geophysical Research Letters, 30:art. no.-1896.

Peterson, W. T., J. E. Keister. 2003. Interannual variability in copepod community composition at a coastal station in the northern California Current: a multivariate approach. Deep Sea Research Part II: Topical Studies in Oceanography, 50:2499-2517.

Regetz, J. 2003. Landscape-level constraints on recruitment of chinook salmon (Oncorhynchus tshawytscha) in the Columbia River basin, USA. Aquatic Conservation: Marine and Freshwater Ecosystems, 13:35-49.

Roberts, C. M., G. Branch, R. H. Bustamante, J. C. Castilla, J. Dugan, B. S. Halpern, K. D. Lafferty, H. Leslie, J. Lubchenco, D. McArdle, M. H. Ruckelshaus, R. R. Warner. 2003. Application of ecological criteria in selecting marine reserves and developing reserve networks. Ecological Applications, 13:S215-228.

Roberts, C. M., S. Andelman, G. Branch, R. H. Bustamante, J. C. Castilla, J. Dugan, B. S. Halpern, K. D. Lafferty, H. Leslie, J. Lubchenco, D. McArdle, H. P. Possingham, M. H. Ruckelshaus, R. R. Warner. 2003. Ecological criteria for evaluating candidate sites for marine reserves. Ecological Applications (Suppl.), 13(1 ):S199-S214.

Roegner, G. C., D. A. Armstrong, B. M. Hickey, A. Shanks. 2003. Ocean Distribution of Dungeness Crab Megalopae and Recruitment Patterns to Estuaries in Southern Washington State. Estuaries, 26:1058-1070.

Roni, P. 2003. Responses of benthic fishes and giant salamanders to placement of large woody debris in small Pacific Northwest streams. North American Journal of Fisheries Management, 23:1087-1097.

Roy, L. A., J. L. Armstrong, K. Sakamoto, S. Steinert, E. Perkins, D. P. Lomax, L. L. Johnson, D. Schlenk. 2003. The relationships of biochemical endpoints to histopathology and population metrics in feral flatfish species collected near the municipal wastewater outfall of Orange County, California, USA. Environmental Toxicology and Chemistry, 22:1309-1317.

Ruesink, J. L., G. C. Roegner, B. R. Dumbauld, J. A. Newton, D. A. Armstrong. 2003. Contributions of Coastal and Watershed Energy Sources to Secondary Production in a Northeastern Pacific Estuary. Estuaries, 26:1079-1093.

Ryan, B., S. G. Smith, J. M. Butzerin, J. W. Ferguson. 2003. Relative vulnerability to avian predation of juvenile salmonids tagged with passive integrated transponders in the Columbia River estuary, 1998-2000. Transactions of the American Fisheries Society, 132:275-288.

Ryan, B., S. G. Smith, J. M. Butzerin, J. W. Ferguson. 2003. Vulnerability of PIT-tagged juvenile. Transactions of the American Fisheries Society, 132:275-288.

Salinger, D. H., J. J. Anderson, O. S. Hamel. 2003. A parameter estimation routine for the vitality-based survival model. Ecological Modelling, 166:287-294.

Sathivel, S., P. J. Bechtel, J. K. Babbitt, S. Smiley, C. Crapo, K. D. Reppond, W. Prinyawiwatkul. 2003. Biochemical and Functional Properties of Herring (Clupea harengus) Byproduct Hydrolysates. Journal of Food Science, 68:2196-2200.

Schabetsberger, R., C. A. Morgan, R. D. Brodeur, C. L. Potts, W. T. Peterson, R. L. Emmett. 2003. Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume. Fisheries Oceanography, 12:523-540.

Schabetsberger, R., M. Sztatecsny, G. Drozdowski, R. D. Brodeur, G. L. Swartzman, M. T. Wilson, A. G. Winter, J. M. Napp. 2003. Size-dependent, spatial, and temporal variability of juvenile walleye pollock (Theragra chalcogramma) feeding at a structural front in the southeast Bering Sea. Marine Ecology, 24:141-164.

Scheurer, J. A., K. D. Fausch, K. R. Bestgen. 2003. Multiscale processes regulate brassy minnow persistence in a great plains river. Transactions of the American Fisheries Society, 132:840-855.

Scheurer, J. A., K. R. Bestgen, K. D. Fausch. 2003. Resolving Taxonomy and Historic Distribution for Conservation of Rare Great Plains Fishes: Hybognathus (Teleostei: Cyprinidae) in Eastern Colorado Basins. Copeia, 2003:1-12.

Shimizu, M., A. Hara, W. W. Dickhoff. 2003. Development of an RIA for salmon 41 kDa IGF-binding protein. Journal of Endocrinology, 178:275-283.

Shimizu, M., P. Swanson, A. Hara, W. W. Dickhoff. 2003. Purification of a 41-kDa insulin-like growth factor binding protein from serum of chinook salmon, Oncorhynchus tshawytscha. General and Comparative Endocrinology, 132:103-111.

Smith, S. G., W. D. Muir, E. E. Hockersmith, R. W. Zabel, R. J. Graves, C. V. Ross, W. P. Connor, B. D. Arnsberg. 2003. Influence of River Conditions on Survival and Travel Time of Snake River Subyearling Fall Chinook Salmon. North American Journal of Fisheries Management, 23:939-961.

Spidle, A. P., S. T. Kalinowski, B. A. Lubinski, D. L. Perkins, K. F. Beland, J. F. Kocik, T. L. King. 2003. Population structure of Atlantic salmon in Maine with reference to populations from Atlantic Canada. Transactions of the American Fisheries Society, 132(2):196-209.

Steel, E. A., L. Johnston, B. E. Feist, G. R. Pess, R. E. Bilby, D. Jensen, T. J. Beechie, J. M. Myers. 2003. Pacific salmon recovery planning and the Salmonid Watershed Analysis Model (SWAM): a broad-scale tool for assisting in the development of habitat recovery plans. Endangered Species Update, 20(1):3-15.

Swanson, P., J. T. Dickey, B. Campbell. 2003. Biochemistry and physiology of fish gonadotropins. Fish Physiology and Biochemistry, 28:53-59.

Teel, D. J., D. M. Van Doornik, D. R. Kuligowski, W. S. Grant. 2003. Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish. Fishery Bulletin, 101:640-652. (Allele Frequencies | Electroporetic Conditions)

Trainer, V. L., B. L. Eberhart, J. C. Wekell, N. G. Adams, L. Hanson, F. Cox, J. Dowell. 2003. Paralytic shellfish toxins in Puget Sound, Washington state. Journal of Shellfish Research, 22:213-223.

Waknitz, F. W., R. N. Iwamoto, M. S. Strom. 2003. Interactions of Atlantic salmon in the Pacific Northwest: IV. Impacts on the local ecosystems. Fisheries Research, 62:307-328.

Waknitz, F. W. 2003. U.S. salmon-farming sanctions could also hurt commercial fishing. Global Aquaculture Advocate, April 2003:19-20.

Weltzien, F. A., B. Norberg, P. Swanson, J. V. Helvik, O. K. Andersen, E. Andersen. 2003. Identification and localization of eight distinct hormone-producing cell types in the pituitary of male Atlantic halibut (Hippoglossus hippoglossus L.). Comparative Biochemistry and Physiology, 134:315-327.

Weltzien, F. A., B. Norberg, P. Swanson. 2003. Isolation and characterization of FSH and LH from pituitary glands of Atlantic halibut (Hippoglossus hippoglossus L.). General and Comparative Endocrinology, 131:97-105.

Winans, G. A., S. Pollard, D. R. Kuligowski. 2003. Two reproductive life history types of Kokanee, Onchorynchus nerka, exhibit multivariate morphometric and protein genetic differentiation. Environmental Biology of Fishes, 77:87-100.

Yoklavich, M. M., C. B. Grimes, W. W. Wakefield. 2003. Using laser line scan imaging technology to assess deepwater habitats in the Monterey Bay National Marine Sanctuary. Marine Technology Society Journal, 37(1):18-26.

Zabel, R. W., C. J. Harvey, S. L. Katz, T. P. Good, P. S. Levin. 2003. Ecologically Sustainable Yield. American Scientist, 91:150-157.