Kingdom |
Category |
Genus/Species |
Count |
|
  |
  |
67 |
Archaea |
  |
  |
6 |
  |
|
  |
67 |
  |
Euryarchaeota |
  |
6 |
  |
  |
Archaeoglobus fulgidus (afu) |
1 |
  |
  |
Methanosarcina acetivorans (mac) |
2 |
  |
  |
Methanosarcina barkeri (mba) |
1 |
  |
  |
Uncultured methanogenic archaeon RC-I (rci) |
1 |
  |
  |
Thermococcus kodakaraensis (tko) |
1 |
Bacteria |
  |
  |
3912 |
  |
Acidobacteria |
  |
3 |
  |
  |
Acidobacteria bacterium (aba) |
2 |
  |
  |
Solibacter usitatus (sus) |
1 |
  |
Actinobacteria |
  |
39 |
  |
  |
Arthrobacter aurescens (aau) |
4 |
  |
  |
Arthrobacter sp. FB24 (art) |
1 |
  |
  |
Corynebacterium efficiens (cef) |
1 |
  |
  |
Frankia alni (fal) |
5 |
  |
  |
Frankia sp. EAN1pec (fre) |
1 |
  |
  |
Mycobacterium sp. JLS (mjl) |
1 |
  |
  |
Mycobacterium sp. KMS (mkm) |
2 |
  |
  |
Mycobacterium avium paratuberculosis (mpa) |
1 |
  |
  |
Mycobacterium vanbaalenii (mva) |
1 |
  |
  |
Nocardioides sp. JS614 (nca) |
4 |
  |
  |
Rhodococcus sp. RHA1 (rha) |
2 |
  |
  |
Rubrobacter xylanophilus (rxy) |
5 |
  |
  |
Salinispora arenicola (saq) |
2 |
  |
  |
Streptomyces coelicolor (sco) |
3 |
  |
  |
Saccharopolyspora erythraea (sen) |
5 |
  |
  |
Streptomyces avermitilis (sma) |
1 |
  |
Bacteroides |
  |
2 |
  |
  |
Gramella forsetii (gfo) |
1 |
  |
  |
Parabacteroides distasonis (pdi) |
1 |
  |
Cyanobacteria |
  |
16 |
  |
  |
Acaryochloris marina (amr) |
1 |
  |
  |
Anabaena sp. PCC7120 (ana) |
3 |
  |
  |
Anabaena variabilis (ava) |
2 |
  |
  |
Cyanobacteria Yellowstone A-Prime (cya) |
1 |
  |
  |
Cyanobacteria Yellowstone B-Prime (cyb) |
1 |
  |
  |
Gloeobacter violaceus (gvi) |
1 |
  |
  |
Synechococcus sp. CC9902 (sye) |
1 |
  |
  |
Synechococcus elongatus PCC7942 (syf) |
1 |
  |
  |
Synechocystis sp. PCC6803 (syn) |
1 |
  |
  |
Trichodesmium erythraeum (ter) |
4 |
  |
Deinococcus-Thermus |
  |
7 |
  |
  |
Deinococcus geothermalis (dge) |
1 |
  |
  |
Deinococcus radiodurans (dra) |
5 |
  |
  |
Thermus thermophilus HB27 (tth) |
1 |
  |
Firmicutes |
  |
20 |
  |
  |
Bacillus amyloliquefaciens (bay) |
1 |
  |
  |
Bacillus halodurans (bha) |
3 |
  |
  |
Bacillus licheniformis DSM13 (bld) |
1 |
  |
  |
Clostridium acetobutylicum (cac) |
1 |
  |
  |
Clostridium difficile (cdf) |
1 |
  |
  |
Caldicellulosiruptor saccharolyticus (csc) |
1 |
  |
  |
Clostridium thermocellum (cth) |
4 |
  |
  |
Geobacillus thermodenitrificans (gtn) |
3 |
  |
  |
Listeria monocytogenes EGD-e (lmo) |
1 |
  |
  |
Moorella thermoacetica (mta) |
1 |
  |
  |
Streptococcus thermophilus LMD-9 (ste) |
1 |
  |
  |
Symbiobacterium thermophilum (sth) |
2 |
  |
Green nonsulfur bacteria |
  |
6 |
  |
  |
Herpetosiphon aurantiacus (hau) |
1 |
  |
  |
Roseiflexus castenholzii DSM13941 (rca) |
2 |
  |
  |
Roseiflexus sp. RS-1 (rrs) |
3 |
  |
Green sulfur bacteria |
  |
5 |
  |
  |
Chlorobium chlorochromatii (cch) |
2 |
  |
  |
Chlorobium phaeobacteroides (cph) |
1 |
  |
  |
Chlorobaculum tepidum (cte) |
2 |
  |
Planctomyces |
  |
3 |
  |
  |
Rhodopirellula baltica (rba) |
3 |
  |
Proteobacteria |
  |
3811 |
  |
  |
Acidovorax avenae (aav) |
6 |
  |
  |
Alcanivorax borkumensis (abo) |
1 |
  |
  |
Acinetobacter baumannii (acb) |
2 |
  |
  |
Acinetobacter sp. ADP1 (aci) |
2 |
  |
  |
Acidiphilium cryptum JF-5 (acr) |
23 |
  |
  |
Anaeromyxobacter dehalogenans (ade) |
5 |
  |
  |
Alkalilimnicola ehrlichei (aeh) |
11 |
  |
  |
Anaeromyxobacter sp. Fw109-5 (afw) |
3 |
  |
  |
Acidovorax sp. JS42 (ajs) |
5 |
  |
  |
Aeromonas salmonicida (asa) |
2 |
  |
  |
Actinobacillus succinogenes (asu) |
1 |
  |
  |
Agrobacterium tumefaciens C58 (Cereon) (atc) |
59 |
  |
  |
Agrobacterium tumefaciens C58 (UWash/Dupont) (atu) |
4 |
  |
  |
Azorhizobium caulinodans (azc) |
38 |
  |
  |
Azoarcus sp. BH72 (azo) |
13 |
  |
  |
Burkholderia cepacia (bam) |
4 |
  |
  |
Bdellovibrio bacteriovorus (bba) |
2 |
  |
  |
Bordetella bronchiseptica (bbr) |
4 |
  |
  |
Bradyrhizobium sp. BTAi1 (bbt) |
13 |
  |
  |
Burkholderia cenocepacia HI2424 (bch) |
4 |
  |
  |
Burkholderia cenocepacia AU1054 (bcn) |
1 |
  |
  |
Bradyrhizobium japonicum (bja) |
29 |
  |
  |
Brucella abortus (bmb) |
5 |
  |
  |
Brucella melitensis (bme) |
1 |
  |
  |
Burkholderia mallei NCTC 10229 (bml) |
1 |
  |
  |
Burkholderia mallei NCTC 10247 (bmn) |
2 |
  |
  |
Brucella suis (bms) |
3 |
  |
  |
Brucella ovis (bov) |
12 |
  |
  |
Burkholderia pseudomallei 668 (bpd) |
1 |
  |
  |
Bordetella pertussis (bpe) |
1 |
  |
  |
Burkholderia pseudomallei K96243 (bps) |
1 |
  |
  |
Bradyrhizobium sp. ORS278 (bra) |
15 |
  |
  |
Burkholderia thailandensis (bte) |
4 |
  |
  |
Burkholderia sp. 383 (bur) |
3 |
  |
  |
Burkholderia vietnamiensis (bvi) |
7 |
  |
  |
Burkholderia xenovorans (bxe) |
16 |
  |
  |
Caulobacter crescentus (ccr) |
12 |
  |
  |
Campylobacter jejuni subsp. doylei 269.97 (cjd) |
1 |
  |
  |
Chromohalobacter salexigens (csa) |
7 |
  |
  |
Chromobacterium violaceum (cvi) |
5 |
  |
  |
Delftia acidovorans (dac) |
6 |
  |
  |
Dechloromonas aromatica (dar) |
6 |
  |
  |
Desulfovibrio desulfuricans (dde) |
1 |
  |
  |
Desulfotalea psychrophila (dps) |
1 |
  |
  |
Dinoroseobacter shibae (dsh) |
525 |
  |
  |
Desulfovibrio vulgaris DP4 (dvl) |
2 |
  |
  |
Desulfovibrio vulgaris Hildenborough (dvu) |
1 |
  |
  |
Azoarcus sp. EbN1 (eba) |
5 |
  |
  |
Escherichia coli CFT073 (UPEC) (ecc) |
1 |
  |
  |
Escherichia coli APEC O1 (ecv) |
4 |
  |
  |
Erythrobacter litoralis (eli) |
2 |
  |
  |
Enterobacter sp. 638 (ent) |
1 |
  |
  |
Enterobacter sakazakii (esa) |
1 |
  |
  |
Granulobacter bethesdensis (gbe) |
4 |
  |
  |
Geobacter metallireducens (gme) |
1 |
  |
  |
Gluconobacter oxydans (gox) |
2 |
  |
  |
Geobacter sulfurreducens (gsu) |
2 |
  |
  |
Herminiimonas arsenicoxydans (har) |
3 |
  |
  |
Hahella chejuensis (hch) |
4 |
  |
  |
Halorhodospira halophila (hha) |
4 |
  |
  |
Hyphomonas neptunium (hne) |
11 |
  |
  |
Jannaschia sp. CCS1 (jan) |
190 |
  |
  |
Klebsiella pneumoniae (kpn) |
5 |
  |
  |
Legionella pneumophila Corby (lpc) |
2 |
  |
  |
Legionella pneumophila Paris (lpp) |
1 |
  |
  |
Magnetospirillum magneticum (mag) |
24 |
  |
  |
Marinobacter aquaeolei (maq) |
8 |
  |
  |
Methylococcus capsulatus (mca) |
4 |
  |
  |
Mesorhizobium sp. BNC1 (mes) |
83 |
  |
  |
Methylobacillus flagellatus (mfa) |
1 |
  |
  |
Magnetococcus sp. MC-1 (mgm) |
2 |
  |
  |
Mesorhizobium loti (mlo) |
82 |
  |
  |
Minibacterium massiliensis (mms) |
1 |
  |
  |
Marinomonas sp. MWYL1 (mmw) |
14 |
  |
  |
Methylibium petroleiphilum (mpt) |
6 |
  |
  |
Myxococcus xanthus (mxa) |
5 |
  |
  |
Novosphingobium aromaticivorans (nar) |
19 |
  |
  |
Nitrosomonas eutropha (net) |
2 |
  |
  |
Nitrosomonas europaea (neu) |
2 |
  |
  |
Nitrobacter hamburgensis (nha) |
15 |
  |
  |
Neisseria meningitidis FAM18 (nmc) |
1 |
  |
  |
Nitrosospira multiformis (nmu) |
1 |
  |
  |
Nitrosococcus oceani (noc) |
10 |
  |
  |
Nitrobacter winogradskyi (nwi) |
5 |
  |
  |
Ochrobactrum anthropi (oan) |
44 |
  |
  |
Pseudomonas aeruginosa PAO1 (pae) |
6 |
  |
  |
Pseudomonas aeruginosa PA7 (pap) |
7 |
  |
  |
Pseudomonas aeruginosa UCBPP-PA14 (pau) |
3 |
  |
  |
Pelobacter carbinolicus (pca) |
3 |
  |
  |
Psychrobacter cryohalolentis (pcr) |
1 |
  |
  |
Paracoccus denitrificans (pde) |
860 |
  |
  |
Pseudomonas entomophila (pen) |
8 |
  |
  |
Pseudomonas fluorescens Pf-5 (pfl) |
4 |
  |
  |
Pseudomonas fluorescens PfO-1 (pfo) |
3 |
  |
  |
Pseudoalteromonas haloplanktis (pha) |
1 |
  |
  |
Psychromonas ingrahamii (pin) |
2 |
  |
  |
Parvibaculum lavamentivorans (pla) |
10 |
  |
  |
Photorhabdus luminescens (plu) |
1 |
  |
  |
Pseudomonas mendocina (pmy) |
5 |
  |
  |
Polaromonas naphthalenivorans (pna) |
7 |
  |
  |
Polynucleobacter sp. QLW-P1DMWA-1 (pnu) |
1 |
  |
  |
Polaromonas sp. JS666 (pol) |
6 |
  |
  |
Pelobacter propionicus (ppd) |
1 |
  |
  |
Pseudomonas putida F1 (ppf) |
2 |
  |
  |
Photobacterium profundum (ppr) |
4 |
  |
  |
Pseudomonas putida KT2440 (ppu) |
6 |
  |
  |
Pseudomonas stutzeri (psa) |
10 |
  |
  |
Pseudomonas syringae pv. syringae B728a (psb) |
4 |
  |
  |
Pseudomonas syringae pv. tomato DC3000 (pst) |
2 |
  |
  |
Roseobacter denitrificans (rde) |
236 |
  |
  |
Ralstonia eutropha H16 (reh) |
2 |
  |
  |
Rhizobium etli (ret) |
40 |
  |
  |
Ralstonia eutropha JMP134 (reu) |
6 |
  |
  |
Rhodoferax ferrireducens (rfr) |
8 |
  |
  |
Rhizobium leguminosarum (rle) |
39 |
  |
  |
Ralstonia metallidurans (rme) |
2 |
  |
  |
Rhodopseudomonas palustris CGA009 (rpa) |
11 |
  |
  |
Rhodopseudomonas palustris HaA2 (rpb) |
20 |
  |
  |
Rhodopseudomonas palustris BisB18 (rpc) |
17 |
  |
  |
Rhodopseudomonas palustris BisB5 (rpd) |
14 |
  |
  |
Rhodopseudomonas palustris BisA53 (rpe) |
19 |
  |
  |
Rhodospirillum rubrum (rru) |
31 |
  |
  |
Ralstonia solanacearum (rso) |
5 |
  |
  |
Sphingopyxis alaskensis (sal) |
7 |
  |
  |
Syntrophus aciditrophicus (sat) |
2 |
  |
  |
Saccharophagus degradans (sde) |
3 |
  |
  |
Shigella dysenteriae (sdy) |
1 |
  |
  |
Shigella flexneri 301 (serotype 2a) (sfl) |
1 |
  |
  |
Shewanella frigidimarina (sfr) |
2 |
  |
  |
Shigella flexneri 8401 (serotype 5b) (sfv) |
1 |
  |
  |
Shigella flexneri 2457T (serotype 2a) (sfx) |
1 |
  |
  |
Sodalis glossinidius (sgl) |
1 |
  |
  |
Silicibacter pomeroyi (sil) |
505 |
  |
  |
Silicibacter sp. TM1040 (sit) |
208 |
  |
  |
Shewanella loihica (slo) |
4 |
  |
  |
Sinorhizobium medicae (smd) |
75 |
  |
  |
Sinorhizobium meliloti (sme) |
66 |
  |
  |
Shewanella oneidensis (son) |
1 |
  |
  |
Salmonella typhimurium LT2 (stm) |
2 |
  |
  |
Salmonella enterica serovar Typhi CT18 (sty) |
1 |
  |
  |
Sphingomonas wittichii (swi) |
22 |
  |
  |
Thiobacillus denitrificans (tbd) |
1 |
  |
  |
Thiomicrospira crunogena (tcx) |
1 |
  |
  |
Vibrio cholerae O395 (vco) |
1 |
  |
  |
Verminephrobacter eiseniae (vei) |
14 |
  |
  |
Vibrio fischeri (vfi) |
1 |
  |
  |
Vibrio parahaemolyticus (vpa) |
1 |
  |
  |
Vibrio vulnificus CMCP6 (vvu) |
1 |
  |
  |
Vibrio vulnificus YJ016 (vvy) |
1 |
  |
  |
Xanthomonas axonopodis (xac) |
1 |
  |
  |
Xanthobacter autotrophicus (xau) |
19 |
  |
  |
Xanthomonas campestris pv. campestris 8004 (xcb) |
3 |
  |
  |
Xanthomonas campestris pv. campestris ATCC 33913 (xcc) |
2 |
  |
  |
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
  |
  |
Xanthomonas oryzae MAFF311018 (xom) |
1 |
  |
  |
Xanthomonas oryzae KACC10331 (xoo) |
3 |
  |
  |
Yersinia pseudotuberculosis IP31758 (ypi) |
1 |
  |
  |
Zymomonas mobilis (zmo) |
6 |
Eukaryotes |
  |
  |
15 |
  |
Animals |
  |
5 |
  |
  |
Drosophila pseudoobscura (dpo) |
1 |
  |
  |
Gallus gallus (chicken) (gga) |
1 |
  |
  |
Macaca mulatta (rhesus monkey) (mcc) |
1 |
  |
  |
Nematostella vectensis (sea anemone) (nve) |
2 |
  |
Fungi |
  |
2 |
  |
  |
Aspergillus nidulans (ani) |
1 |
  |
  |
Yarrowia lipolytica (yli) |
1 |
  |
Plants |
  |
2 |
  |
  |
Ostreococcus lucimarinus (olu) |
2 |
  |
Protists |
  |
6 |
  |
  |
Cryptosporidium parvum (cpv) |
1 |
  |
  |
Leishmania major (lma) |
3 |
  |
  |
Trypanosoma brucei (tbr) |
1 |
  |
  |
Trypanosoma cruzi (tcr) |
1 |
NULL |
  |
  |
242 |
TOTAL |
  |
  |
4242 |