Reference SNP(refSNP) Cluster Report: rs34186961

Reference SNP(refSNP) Cluster Report: rs34186961

refSNP ID: rs34186961
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/129
Map to Genome Build:	36.3

Allele
Variation Class:	DIP: deletion/insertion polymorphism
RefSNP Alleles:	-/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_017869.3:c.1155+536_1155+537insG
NM_079837.2:c.1155+536_1155+537insG
NT_010498.15:g.41683735_41683736insG

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss43498604 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs34186961 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss43498604	ABI\|hCV32914480		fwd/	-/G	cctgctgggtctgtgattgtctcagtttct	ggagctctacccggccacgcactcagaagt	07/18/05	07/18/05	126	Genomic			unknown

Fasta sequence (Legend)

 TCCTGGGTAG ATGTTTCTAC TGCTGGCTGG AAGTGCCCTC TGAGTACCCT TCTCTCCCTG
 TCTGGCCCTG CCCTTCCTGC CAGGGGAGGC CCCCAGTGTG GCCGAGATGG GGTCTGCCCC
 TGCGTAGGTG ACCTGACATA CCCCCTCACC TGCCATGTGG CCCCAGCTTC CTAGTGGCCT
 CTACGGGATT AGTGCCGATT TCATGGGATG GTGGGGAATC CCACAAGGTG ATGCTGCCAG
 TCCTGAGAGC TGCTCATAGC CCTTGACGCA CCTGCTGGGT CTGTGATTGT CTCAGTTTCT
 N
 GGAGCTCTAC CCGGCCACGC ACTCAGAAGT GCGGGCTCAG CTGCTGTTGG GGTCTGGAAT
 GTGAAGGCGG CAGTGACAGT CTGAGTTCTT GGAAAGCCGA GGCCAGCCTG TTGCGATGCT
 CCATGTTTGC ATGCCAGAGC AGGACTGTCT CCCGGGTGAC CGTCCTTCGA CTCTGGGCTG
 TTTCCTGCAG CACAGGCAGC AGCAGGCACA GGGCACTAAG CAGCACACAC GTGTTGTACT
 CAGTGACCGT GGTGCGCTCT GGGGGATGAG GAACATGGCT GTTTCTAGGT CGTGACAATG

GeneView

GeneView via analysis of contig annotation: BANP BTG3 associated nuclear protein

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010498->NM_017869

function

reference

NT_010498->NM_079837

function

HuRef

NW_001838330->NM_017869

function

HuRef

NW_001838330->NM_079837

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_010498->NM_017869->NP_060339	41683735:41683736	forward	intron

reference	NT_010498->NM_079837->NP_524576	41683735:41683736	forward	intron

HuRef	NW_001838330->NM_017869->NP_060339	530262:530263	forward	intron

HuRef	NW_001838330->NM_079837->NP_524576	530262:530263	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs34186961 maps exactly once on NCBI human chromosome 16

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
16	NW_001838330.1	530262^530263	73808354^73808355	plus	-	alt_assembly_8	HuRef	HuRef	view	300..300
16	NT_010498.15	41683735^41683736	86627037^86627038	plus	-	ref_assembly	reference	reference	view	300..300
Un	NW_927962.1	3964^3965	unplaced	plus	-	alt_assembly_1	Celera	Celera	view	300..300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:
AC127455.4 AC134312.3 NC_000016.8

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .