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Library:5159 (dbEST ID)
HT0447
Library Description
| Organism: | Homo sapiens |
| Developmental stage: | Adult |
| Organ: | head_neck |
| Vector: | puc18 |
| Vector type: | Plasmid |
| Cloning site 1: | SmaI |
| Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
Gene Content Analysis
24 ESTs from this library were grouped into 24 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 1 | 41667 |  |
Hs.716979 | Transcribed locus, strongly similar to NP_536848.1 ATP synthase F0 subunit 6 [Homo sapiens]. |
| 1 | 41667 | |
Hs.715779 | Transcribed locus. |
| 1 | 41667 | |
Hs.713441 | MHC class I antigen HLA-A. |
| 1 | 41667 | |
Hs.711490 | Nuclear antigen H731-like protein. |
| 1 | 41667 | |
Hs.69293 | Beta-hexosaminidase beta chain. |
| 1 | 41667 | |
Hs.692284 | Transcribed locus. |
| 1 | 41667 | |
Hs.675928 | Transcribed locus. |
| 1 | 41667 | |
Hs.655019 | CDNA FLJ38710 fis, clone KIDNE2002980. |
| 1 | 41667 | |
Hs.654400 | Full length insert cDNA YQ19A04. |
| 1 | 41667 | |
Hs.638144 | Transcribed locus. |
| 1 | 41667 | |
Hs.622504 | Transcribed locus. |
| 1 | 41667 | |
Hs.533913 | CDNA FLJ60799 complete cds. |
| 1 | 41667 | |
Hs.524506 | ANKRD33 mRNA for ankyrin repeat domain 33. |
| 1 | 41667 | |
Hs.523789 | Trophoblast MHC class II suppressor mRNA, complete sequence. |
| 1 | 41667 | |
Hs.504856 | CDNA FLJ43113 fis, clone CTONG2028208. |
| 1 | 41667 | |
Hs.480876 | Anaphase promoting complex subunit 10, mRNA (cDNA clone MGC:12234 IMAGE:3929766). |
| 1 | 41667 | |
Hs.444451 | Mixed lineage kinase. |
| 1 | 41667 | |
Hs.439060 | Full length insert cDNA clone ZE03C06. |
| 1 | 41667 | |
Hs.407580 | P0071 protein. |
| 1 | 41667 | |
Hs.325846 | Zinc finger CCCH-type containing 14, mRNA (cDNA clone IMAGE:4904207). |
| 1 | 41667 | |
Hs.309641 | CDNA FLJ77817 complete cds, highly similar to Homo sapiens ring finger protein 11 (RNF11), mRNA. |
| 1 | 41667 | |
Hs.29189 | Homo sapiens, clone IMAGE:4427831, mRNA. |
| 1 | 41667 | |
Hs.257008 | Phospholipase D family, member 3, mRNA (cDNA clone MGC:35422 IMAGE:5189261). |
| 1 | 41667 | |
Hs.24135 | Vezatin, adherens junctions transmembrane protein, mRNA (cDNA clone IMAGE:4823231). |
Source: NCBI UniGene
EST Sequences
67 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- thyroid
- head and neck tumor
- adult
Source: NCBI Clone Registry
References
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).