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Library:5218 (dbEST ID)
HT0559
Library Description
| Organism: | Homo sapiens |
| Developmental stage: | Adult |
| Organ: | head_neck |
| Vector: | puc18 |
| Vector type: | Plasmid |
| Cloning site 1: | SmaI |
| Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
Gene Content Analysis
1,742 ESTs from this library were grouped into 1,204 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 1 | 574 |  |
Hs.700839 | Transcribed locus, moderately similar to XP_800750.2 PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]. |
| 1 | 574 | |
Hs.700740 | Transcribed locus. |
| 1 | 574 | |
Hs.700599 | Wolf-Hirschhorn syndrome candidate 1-like 1, mRNA (cDNA clone IMAGE:3546345). |
| 1 | 574 | |
Hs.699195 | SOX-4 protein. |
| 1 | 574 | |
Hs.699155 | Calnexin. |
| 1 | 574 | |
Hs.696712 | Transcribed locus. |
| 1 | 574 | |
Hs.696394 | Heat shock protein 90Bc (HSP90Bc). |
| 1 | 574 | |
Hs.696087 | CDNA FLJ58440 complete cds, highly similar to Ankyrin repeat and FYVE domain-containing protein 1. |
| 1 | 574 | |
Hs.693749 | Zinc finger, DHHC-type containing 20 (ZDHHC20), mRNA. |
| 1 | 574 | |
Hs.692448 | Transcribed locus. |
| 1 | 574 | |
Hs.690266 | Transcribed locus. |
| 1 | 574 | |
Hs.689683 | Transcribed locus, strongly similar to XP_854919.1 PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor specific transplantation 84 kDa antigen) (TSTA) [Canis familiaris]. |
| 1 | 574 | |
Hs.688744 | Transcribed locus. |
| 1 | 574 | |
Hs.688732 | Transcribed locus. |
| 1 | 574 | |
Hs.688350 | Transcribed locus. |
| 1 | 574 | |
Hs.687991 | Transcribed locus. |
| 1 | 574 | |
Hs.68714 | Alternative splicing factor. |
| 1 | 574 | |
Hs.686993 | CDNA FLJ34095 fis, clone FCBBF3007244, weakly similar to Homo sapiens SARDH mRNA. |
| 1 | 574 | |
Hs.686629 | Transcribed locus. |
| 1 | 574 | |
Hs.685673 | Transcribed locus. |
| 1 | 574 | |
Hs.684956 | Transcribed locus. |
| 1 | 574 | |
Hs.684072 | Transcribed locus. |
| 1 | 574 | |
Hs.682467 | Transcribed locus. |
| 1 | 574 | |
Hs.682303 | Transcribed locus. |
| 1 | 574 | |
Hs.679687 | Transcribed locus. |
| 1 | 574 | |
Hs.677651 | Transcribed locus. |
| 1 | 574 | |
Hs.677439 | Transcribed locus, strongly similar to NP_079042.1 hypothetical protein LOC79823 [Homo sapiens]. |
| 1 | 574 | |
Hs.677320 | CDNA: FLJ21440 fis, clone COL04389. |
| 1 | 574 | |
Hs.675952 | Transcribed locus. |
| 1 | 574 | |
Hs.675951 | CDNA FLJ26868 fis, clone PRS08581. |
| 1 | 574 | |
Hs.675950 | Small nucleolar RNA, C/D box 9 (SNORD9), non-coding RNA. |
| 1 | 574 | |
Hs.675949 | Transcribed locus. |
| 1 | 574 | |
Hs.675666 | Transcribed locus. |
| 1 | 574 | |
Hs.674249 | Transcribed locus. |
| 1 | 574 | |
Hs.673104 | Transcribed locus. |
| 1 | 574 | |
Hs.672316 | Transcribed locus. |
| 1 | 574 | |
Hs.672130 | Transcribed locus. |
| 1 | 574 | |
Hs.671896 | Transcribed locus. |
| 1 | 574 | |
Hs.671122 | Transcribed locus. |
| 1 | 574 | |
Hs.670084 | Transcribed locus. |
| 1 | 574 | |
Hs.669699 | Transcribed locus. |
| 1 | 574 | |
Hs.669238 | Transcribed locus. |
| 1 | 574 | |
Hs.668832 | Transcribed locus. |
| 1 | 574 | |
Hs.6686 | Chromosome 15 open reading frame 44, mRNA (cDNA clone IMAGE:4800066). |
| 1 | 574 | |
Hs.668588 | CDNA FLJ44227 fis, clone THYMU3006367. |
| 1 | 574 | |
Hs.668447 | Transcribed locus. |
| 1 | 574 | |
Hs.667640 | Transcribed locus. |
| 1 | 574 | |
Hs.667582 | Transcribed locus. |
| 1 | 574 | |
Hs.667545 | Transcribed locus. |
| 1 | 574 | |
Hs.667126 | Transcribed locus. |
| 1 | 574 | |
Hs.666716 | Transcribed locus. |
| 1 | 574 | |
Hs.666378 | Transcribed locus. |
| 1 | 574 | |
Hs.666126 | Homo sapiens, clone IMAGE:4106389, mRNA. |
| 1 | 574 | |
Hs.665057 | MRNA expressed in skin fibroblast. |
| 1 | 574 | |
Hs.664244 | Transcribed locus. |
| 1 | 574 | |
Hs.663896 | Transcribed locus, strongly similar to NP_062172.1 clathrin, heavy chain (Hc) [Rattus norvegicus]. |
| 1 | 574 | |
Hs.663724 | CDNA clone IMAGE:5300703. |
| 1 | 574 | |
Hs.662815 | Transcribed locus. |
| 1 | 574 | |
Hs.661732 | Clone A9A2BRB8 repeat region. |
| 1 | 574 | |
Hs.661684 | Zinc finger protein 337 (ZNF337), mRNA. |
| 1 | 574 | |
Hs.661053 | Transcribed locus. |
| 1 | 574 | |
Hs.661014 | HtrA serine peptidase 4 (HTRA4), mRNA. |
| 1 | 574 | |
Hs.660858 | Transcribed locus. |
| 1 | 574 | |
Hs.660738 | Transcribed locus. |
| 1 | 574 | |
Hs.660642 | CDNA FLJ57968 complete cds, highly similar to Zinc finger protein 438. |
| 1 | 574 | |
Hs.660528 | Transcribed locus. |
| 1 | 574 | |
Hs.660076 | Zinc finger protein 19 (ZNF19), mRNA. |
| 1 | 574 | |
Hs.659670 | Full length insert cDNA clone YZ35C05. |
| 1 | 574 | |
Hs.658986 | Transcribed locus. |
| 1 | 574 | |
Hs.658566 | CDNA FLJ53558 complete cds, highly similar to Protein disulfide-isomerase A3 precursor (EC 5.3.4.1). |
| 1 | 574 | |
Hs.658510 | CDNA FLJ37623 fis, clone BRCOC2014013. |
| 1 | 574 | |
Hs.658475 | Transcribed locus. |
| 1 | 574 | |
Hs.658420 | Transcribed locus. |
| 1 | 574 | |
Hs.657818 | Regulatory solute carrier protein, family 1, member 1 (RSC1A1), mRNA. |
| 1 | 574 | |
Hs.657781 | Transcribed locus. |
| 1 | 574 | |
Hs.657682 | Transcribed locus. |
| 1 | 574 | |
Hs.657385 | CDNA FLJ54251 complete cds, highly similar to RCC1 and BTB domain-containing protein 2. |
| 1 | 574 | |
Hs.657121 | Spermatogenesis associated 13 (SPATA13), mRNA. |
| 1 | 574 | |
Hs.656902 | CDNA: FLJ21984 fis, clone HEP06222, highly similar to AF111162 Homo sapiens guanine nucleotide exchange factor mRNA. |
| 1 | 574 | |
Hs.656607 | Transcribed locus, strongly similar to NP_060542.4 protein BAP28 [Homo sapiens]. |
| 1 | 574 | |
Hs.656471 | CDNA FLJ52741 complete cds, highly similar to Mus musculus adaptor-related protein complex 1, sigma 2 subunit (Ap1s2), mRNA. |
| 1 | 574 | |
Hs.656339 | TC10-like Rho GTPase (TCL gene). |
| 1 | 574 | |
Hs.656271 | CDNA FLJ33857 fis, clone CTONG2006004. |
| 1 | 574 | |
Hs.655758 | CDNA FLJ61546 complete cds. |
| 1 | 574 | |
Hs.655714 | CDNA FLJ40130 fis, clone TESTI2011683, weakly similar to Homo sapiens liprin-beta2 mRNA. |
| 1 | 574 | |
Hs.655671 | Clone 23760. |
| 1 | 574 | |
Hs.655645 | Mannan-binding lectin serine peptidase 2 (MASP2), transcript variant 2, mRNA. |
| 1 | 574 | |
Hs.655519 | Myopodin. |
| 1 | 574 | |
Hs.655387 | Clone 23907 mRNA sequence. |
| 1 | 574 | |
Hs.655356 | Transcribed locus. |
| 1 | 574 | |
Hs.655340 | Transcribed locus, moderately similar to NP_035826.1 voltage-dependent anion channel 3 [Mus musculus]. |
| 1 | 574 | |
Hs.655285 | TNF-alpha stimulated ABC protein (ABC50). |
| 1 | 574 | |
Hs.655277 | Ribosomal protein S6 kinase 2 (RPS6KA2). |
| 1 | 574 | |
Hs.655189 | WW domain containing E3 ubiquitin protein ligase 1, mRNA (cDNA clone MGC:33686 IMAGE:5296005). |
| 1 | 574 | |
Hs.655181 | Transcribed locus. |
| 1 | 574 | |
Hs.655123 | CDNA FLJ58264 complete cds, highly similar to Kinesin light chain 4. |
| 1 | 574 | |
Hs.655084 | Kelch-like 3 (Drosophila), mRNA (cDNA clone MGC:26234 IMAGE:4817650). |
| 1 | 574 | |
Hs.654973 | CDNA FLJ42149 fis, clone THYMU1000692. |
| 1 | 574 | |
Hs.654907 | CDNA FLJ50285 complete cds, highly similar to Arginyl-tRNA synthetase (EC 6.1.1.19). |
| 1 | 574 | |
Hs.654895 | CDNA clone IMAGE:4829327. |
Source: NCBI UniGene
EST Sequences
2,735 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- thyroid
- head and neck tumor
- adult
Source: NCBI Clone Registry
References
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).