BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF3160
(216 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156108646|gb|EDO10391.1| hypothetical protein BACOVA_038... 163 7e-39
gi|120436893|ref|YP_862579.1| conserved hypothetical protei... 157 5e-37
gi|88714281|ref|ZP_01108356.1| hypothetical protein FB2170_... 141 3e-32
gi|29346662|ref|NP_810165.1| hypothetical protein BT_1252 [... 140 7e-32
gi|149280261|ref|ZP_01886383.1| hypothetical protein PBAL39... 139 1e-31
gi|110638964|ref|YP_679173.1| hypothetical protein CHU_2578... 139 1e-31
gi|124009820|ref|ZP_01694489.1| conserved hypothetical prot... 139 2e-31
gi|126663760|ref|ZP_01734756.1| hypothetical protein FBBAL3... 135 2e-30
gi|89891064|ref|ZP_01202572.1| conserved hypothetical trans... 133 8e-30
gi|86143463|ref|ZP_01061848.1| hypothetical protein MED217_... 127 4e-28
gi|146298005|ref|YP_001192596.1| hypothetical protein Fjoh_... 121 3e-26
gi|126647837|ref|ZP_01720342.1| hypothetical protein ALPR1_... 102 2e-20
>gi|156108646|gb|EDO10391.1| hypothetical protein BACOVA_03837 [Bacteroides ovatus ATCC 8483]
Length = 199
Score = 163 bits (412), Expect = 7e-39, Method: Composition-based stats.
Identities = 95/216 (43%), Positives = 137/216 (63%), Gaps = 25/216 (11%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLL 60
M+ + ++NEI+ LMEKSSK +SLSG +AI+ G YA A +A
Sbjct: 1 MDKDKALESVNEIKELMEKSSKFISLSGLAAIMAGIYALAGAYIA--------------- 45
Query: 61 SFPRLQVNTP-----YRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRM 115
QV TP ++LM+I A++++V T S K+K++GQ+F F R R
Sbjct: 46 ----TQVITPGTHLIVALELMVIIASLVLVAAAVTACILSYYKSKKTGQKF-FSRLTYRA 100
Query: 116 LLNFFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLL 175
L NF LP+ GG+LC+S++ ++Y + +SVML+FYG+AL+N S +TYS+ +LGYA + L
Sbjct: 101 LWNFSLPMLTGGVLCISIMMHEYYDILASVMLLFYGLALVNVSKFTYSSIVWLGYAFICL 160
Query: 176 GLADSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
G+ D F EGH+LLFWT+GFG FHI+YGI F+L Y+R
Sbjct: 161 GVVDCFWEGHSLLFWTIGFGGFHILYGILFYLHYER 196
>gi|120436893|ref|YP_862579.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
gi|117579043|emb|CAL67512.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 228
Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats.
Identities = 92/214 (42%), Positives = 138/214 (64%), Gaps = 7/214 (3%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLL 60
MEN++ L+EI+++M +SS+ +SLSG S I G YA I A+ A +L S +
Sbjct: 15 MENEKYLQDLSEIKNMMNRSSRFISLSGLSGIFAGIYAIIGAMTAKLILAQNA--SVYIN 72
Query: 61 SFPRLQVN---TPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLL 117
+ + N + MQL+L+ A+LV L + T F + RKA+ + Q+ ++D T++R+L+
Sbjct: 73 GYDSVVANIEKSDLVMQLVLVAIAVLV-LAIGTAVFLTTRKARNNNQK-IWDNTSKRLLI 130
Query: 118 NFFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGL 177
NFF PL GGI CL L+ + GL + MLIFYG+AL++AS YT+ + + LGYA L+LGL
Sbjct: 131 NFFAPLFAGGIFCLVLLQYELVGLIAPAMLIFYGLALVHASKYTFGDLKGLGYANLILGL 190
Query: 178 ADSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
+ G+ + FW +GFG+FHI+YGI+ H KYDR
Sbjct: 191 IATQFIGYGIYFWAVGFGIFHIIYGIWMHNKYDR 224
>gi|88714281|ref|ZP_01108356.1| hypothetical protein FB2170_01946 [Flavobacteriales bacterium
HTCC2170]
gi|88707438|gb|EAQ99683.1| hypothetical protein FB2170_01946 [Flavobacteriales bacterium
HTCC2170]
Length = 202
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 28/220 (12%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLL 60
ME+K L+EI+ LM KSS+ +SLSG S +L G YA I A + Y++
Sbjct: 1 MESKNYLKDLSEIKDLMSKSSRFISLSGLSGVLAGIYALIGATITYWL------------ 48
Query: 61 SFPRLQVNTPYRMQLML---IFAAILVVLC------LTTVFFFSRRKAKRSGQRFVFDRT 111
V T L+L IF L++LC + T + + RKAK++G++ ++D +
Sbjct: 49 ------VTTYSNGTLLLDGWIFRTSLLILCCVAGLSILTGIYLTTRKAKKNGEK-IWDAS 101
Query: 112 AQRMLLNFFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYA 171
++R+++NF +P+ GG+ + ++ +Q YG ++MLIFYG+ALINA+ Y+ N RYLGY
Sbjct: 102 SKRLIVNFMIPMITGGLYIIIILSQQKYGQAGALMLIFYGLALINAAKYSIGNIRYLGYI 161
Query: 172 ELLLGLADSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
E++LGL + V G+ W GFG+ HI+YG + KY++
Sbjct: 162 EIILGLICALVPGYGFWLWVFGFGIMHIIYGSVMYFKYEK 201
>gi|29346662|ref|NP_810165.1| hypothetical protein BT_1252 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338559|gb|AAO76359.1| possible transmembrane protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 183
Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats.
Identities = 87/195 (44%), Positives = 120/195 (61%), Gaps = 15/195 (7%)
Query: 17 MEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLLSFPRLQVNTPYRMQLM 76
MEKSSK +S+SG +AI+ G YA +A L P + T ++LM
Sbjct: 1 MEKSSKFISISGLAAIMAGVYALAGTYIA------------TCLVTPDTTLITA--LKLM 46
Query: 77 LIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFFLPLAVGGILCLSLIWK 136
+I A +++ T S K+K+ Q+F F + R L NF LP+ GG LC+SL+
Sbjct: 47 IIVAILVLAAATVTAGILSYNKSKKLRQKF-FSKLTYRALWNFSLPMLTGGALCISLLLH 105
Query: 137 QHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADSFVEGHALLFWTMGFGV 196
+Y + SSVML+FYG+ L+N S +TY+N +LGYA + LG+ DSF EGHALLFWT+GFG
Sbjct: 106 GYYDILSSVMLLFYGLTLVNVSKFTYANIAWLGYAFICLGVIDSFWEGHALLFWTIGFGG 165
Query: 197 FHIVYGIFFHLKYDR 211
FHI+YGI F+L Y+R
Sbjct: 166 FHILYGILFYLHYER 180
>gi|149280261|ref|ZP_01886383.1| hypothetical protein PBAL39_08671 [Pedobacter sp. BAL39]
gi|149228950|gb|EDM34347.1| hypothetical protein PBAL39_08671 [Pedobacter sp. BAL39]
Length = 206
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/211 (37%), Positives = 133/211 (63%), Gaps = 5/211 (2%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLL 60
ME+K+++ L+ IR+LME+S+K +SLSG S IL G YA I A + Y + G ++ L
Sbjct: 1 MEDKDLYTELSSIRNLMERSAKFISLSGLSGILAGIYALIGAWLGYIQVYG----NRLTL 56
Query: 61 SFPRLQVNTPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFF 120
S+ ++ + + I A ++VL L + + RKA R Q V++ +++++L +
Sbjct: 57 SYRDNYISEEEIIVRLFIIALAVLVLSLGSGILLTLRKAARKKQN-VWNPSSKKLLFSMS 115
Query: 121 LPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADS 180
+PL GG L L L+++ +YG+ + LIFYG+AL+ AS+YT+ + ++LG E++LGL +
Sbjct: 116 VPLLTGGCLLLILMFRGYYGIIAPASLIFYGLALVAASNYTFEDVKWLGIMEIILGLVAA 175
Query: 181 FVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
G+ ++FW +GFG+ HI+YG H KYDR
Sbjct: 176 LFPGYGIVFWAIGFGLLHIIYGSIMHFKYDR 206
>gi|110638964|ref|YP_679173.1| hypothetical protein CHU_2578 [Cytophaga hutchinsonii ATCC 33406]
gi|110281645|gb|ABG59831.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 211
Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats.
Identities = 88/204 (43%), Positives = 124/204 (60%), Gaps = 5/204 (2%)
Query: 10 LNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLLSFPRL-QVN 68
L +IR LME+SSK +SLSG S I G A I A VA + + ++ +++S+ + +
Sbjct: 11 LKQIRQLMERSSKFISLSGLSGISAGVIALIGAFVARWRIHNVLDFN-NVVSYKAIPSFD 69
Query: 69 TPYRMQLMLI-FAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFFLPLAVGG 127
Y + LI A+I ++L L FFF+ +KA G+ +FD + RML+N +PL GG
Sbjct: 70 VLYSLLFELIALASITLILALAAAFFFTNKKASERGES-LFDSLSIRMLVNLAIPLITGG 128
Query: 128 ILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADSFVEGHAL 187
I CL L+ +Q+ L + MLIFYG+AL+N S YT + RYLG AE++LGL G L
Sbjct: 129 IFCLFLL-QQNISLIAPAMLIFYGLALVNGSRYTVDHIRYLGMAEIVLGLIAGLFPGKGL 187
Query: 188 LFWTMGFGVFHIVYGIFFHLKYDR 211
LFW GFGVFHI+YG + K +R
Sbjct: 188 LFWATGFGVFHIIYGAVMYFKLER 211
>gi|124009820|ref|ZP_01694489.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123984228|gb|EAY24584.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 210
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 2/210 (0%)
Query: 2 ENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLLS 61
E +E TL EIRSLMEKSS+ LSLSG S I G +A + A A+ L
Sbjct: 3 EQQEYVETLTEIRSLMEKSSRFLSLSGLSGIFAGVFALLGAGAAFVYLKAPYADYYTRAI 62
Query: 62 FPRLQVNTPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFFL 121
+N + + +I A ++VL L+ +F+ RKAKR G + + + A R+ N +
Sbjct: 63 NADDSINIDF-LTFFIIDALSVLVLSLSAGVYFTWRKAKRKGLKLM-PKPAVRLFWNLMI 120
Query: 122 PLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADSF 181
PLA GG+ C+ L + ++ L + LIFYG+AL+N S YT + RYLG E+ LGL SF
Sbjct: 121 PLATGGLFCVVLGYHGYFALVAPCTLIFYGLALVNGSRYTLNEIRYLGITEIALGLISSF 180
Query: 182 VEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
+ G+ LLFW +GFGV HIVYG +++R
Sbjct: 181 LIGYGLLFWAIGFGVLHIVYGALMWYRHER 210
>gi|126663760|ref|ZP_01734756.1| hypothetical protein FBBAL38_11839 [Flavobacteria bacterium BAL38]
gi|126624343|gb|EAZ95035.1| hypothetical protein FBBAL38_11839 [Flavobacteria bacterium BAL38]
Length = 207
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 85/214 (39%), Positives = 132/214 (61%), Gaps = 11/214 (5%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAY---YMLGGTGGWSQ 57
MEN N ++EI+++M KSS+ +SLSG S IL G YA I A AY Y T G +
Sbjct: 1 MENYNYLNDISEIKNMMNKSSRFISLSGLSGILAGVYALIGAWFAYKTIYFDTSTMGAYR 60
Query: 58 DLLSFPRLQVNTPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLL 117
DL+ ++ ++L++I ++LV+ LT + S RKA+++ + +++ ++R+++
Sbjct: 61 DLV------ISEEAVIRLLVIATSVLVLSILTGIGL-SIRKARKTSES-IWNAASRRLVI 112
Query: 118 NFFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGL 177
NF +PLA GG + LI K +GL + + LIFYG+A +NAS YT + RYLG + LGL
Sbjct: 113 NFMIPLATGGFFIIFLIEKNMFGLIAPLTLIFYGLACVNASKYTIGDVRYLGITMIALGL 172
Query: 178 ADSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
++ G+ LLFW +GFG HI+YG + KY+R
Sbjct: 173 LSTWFLGYGLLFWALGFGGCHILYGSLMYFKYER 206
>gi|89891064|ref|ZP_01202572.1| conserved hypothetical transmembrane protein [Flavobacteria
bacterium BBFL7]
gi|89516708|gb|EAS19367.1| conserved hypothetical transmembrane protein [Flavobacteria
bacterium BBFL7]
Length = 228
Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats.
Identities = 78/216 (36%), Positives = 132/216 (61%), Gaps = 10/216 (4%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYML--GGTGGWSQD 58
M +V + L EIRS+M+KS++ +SLSG S ++ G YA + +VV Y+++ G++
Sbjct: 18 MTKDKVLDDLKEIRSIMDKSTRFISLSGMSGVMAGIYALLGSVVGYFVIEKARRSGYTDT 77
Query: 59 LLSFPRLQVNTPYRMQ---LMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRM 115
L S ++TP+ +L+ A I++ + + T FF ++ KA + Q+ ++++ + R+
Sbjct: 78 LDSL----LSTPWERNPSLQILVIAGIVLFMAVVTAFFLTKIKAAKYKQK-IWNKQSIRL 132
Query: 116 LLNFFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLL 175
+LNF PL++GG+ L+L+ L + ML+FYGIA +NA+ YT +YLG + +L
Sbjct: 133 VLNFLAPLSIGGLFTLALLQYGLLFLVAPAMLVFYGIACMNAAKYTLGTVKYLGLSCAIL 192
Query: 176 GLADSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
GL ++ G+ L FW GFG+ HI+YG + KYDR
Sbjct: 193 GLINTQFIGYGLYFWAAGFGLCHIIYGAVMYYKYDR 228
>gi|86143463|ref|ZP_01061848.1| hypothetical protein MED217_12729 [Flavobacterium sp. MED217]
gi|85829910|gb|EAQ48371.1| hypothetical protein MED217_12729 [Leeuwenhoekiella blandensis
MED217]
Length = 212
Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/213 (36%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
Query: 1 MENKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLL 60
M N +++I+++M KSS+ +SLSG S IL G YA +A A++ + +S D +
Sbjct: 1 MTNNNYLQDISDIKNMMSKSSRFMSLSGLSGILAGIYALAAATYAHFRIATLPDYSGDSV 60
Query: 61 SFPRL-QVNTPYRMQLMLIFAAILVV-LCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLN 118
+ Y + L F A L + L + T + RKAK+ ++ +++ ++R+L +
Sbjct: 61 VLNAVGNFMAAYDLVGDLFFVATLTLFLAIVTGAVLTYRKAKKLNEK-IWNPVSKRLLAH 119
Query: 119 FFLPLAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLA 178
F +PL GG+ CL L+ GL + LIFYG+AL+NAS +T + +YLG A + +GL
Sbjct: 120 FGIPLFAGGLFCLVLLQYGIVGLVAPATLIFYGLALLNASKFTIGDIKYLGIANVFIGLI 179
Query: 179 DSFVEGHALLFWTMGFGVFHIVYGIFFHLKYDR 211
S G+ L FW +GFG+FHI+YG+ + KYDR
Sbjct: 180 ASQFVGYGLYFWALGFGIFHIIYGVILYNKYDR 212
>gi|146298005|ref|YP_001192596.1| hypothetical protein Fjoh_0240 [Flavobacterium johnsoniae UW101]
gi|146152423|gb|ABQ03277.1| hypothetical protein Fjoh_0240 [Flavobacterium johnsoniae UW101]
Length = 204
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 5/207 (2%)
Query: 3 NKEVFNTLNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLGGTGGWSQDLLSF 62
N++ L IRS+ME+SS+ +SLSG S + G A I + Y + G D L+
Sbjct: 2 NQKHQEDLAHIRSMMERSSRFISLSGLSGVFAGLSALIGGIYVYQLFKANG---MDYLND 58
Query: 63 PRLQVNTPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFFLP 122
+ +L I ILV +FF R+ K + ++ ++M+ N +P
Sbjct: 59 EHRLYSANLVSELFWIGITILVFAFAFGIFFTIRKSRKYNLP--IWTSATKKMVFNLAVP 116
Query: 123 LAVGGILCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADSFV 182
L GGI CL+L+ ++GL + LIFYG+A+INA YT+S+ +YLG++EL+LG F
Sbjct: 117 LFAGGIFCLALMHHGYFGLVAPSTLIFYGLAVINAEKYTFSDIKYLGFSELILGCIALFN 176
Query: 183 EGHALLFWTMGFGVFHIVYGIFFHLKY 209
G+ L+FW +GFG+ HIVYG+ KY
Sbjct: 177 IGYGLIFWILGFGILHIVYGLVMFKKY 203
>gi|126647837|ref|ZP_01720342.1| hypothetical protein ALPR1_07695 [Algoriphagus sp. PR1]
gi|126576513|gb|EAZ80791.1| hypothetical protein ALPR1_07695 [Algoriphagus sp. PR1]
Length = 204
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 117/203 (57%), Gaps = 7/203 (3%)
Query: 10 LNEIRSLMEKSSKVLSLSGASAILVGGYACISAVVAYYMLG-GTGGWSQDLLSFPRLQVN 68
L EI+S+ME+S++ LSLSG S +L G YA I+A +A+Y + W P +++
Sbjct: 8 LAEIKSMMERSTRFLSLSGLSGVLAGIYAIIAAGIAWYWIYFPLSKWGN-----PANELS 62
Query: 69 TPYRMQLMLIFAAILVVLCLTTVFFFSRRKAKRSGQRFVFDRTAQRMLLNFFLPLAVGGI 128
+ +L A +++ L L T + S++K++++ Q+F + ++R F+P+ +GG+
Sbjct: 63 DSDLIWRILGLAVVILALALLTAWTMSKKKSEKASQKF-WTSASKRFWQALFIPVLLGGL 121
Query: 129 LCLSLIWKQHYGLTSSVMLIFYGIALINASSYTYSNTRYLGYAELLLGLADSFVEGHALL 188
+L+ + + L + L FYG+ L++AS +T + LG+ +L G+ +F LL
Sbjct: 122 FSFALVHEHTFQLIPAATLCFYGLGLVSASHFTLGEIKKLGFTQLAFGILAAFFPQFGLL 181
Query: 189 FWTMGFGVFHIVYGIFFHLKYDR 211
FW GFG+ H++YG + KYDR
Sbjct: 182 FWAGGFGITHVIYGSMMYYKYDR 204
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.330 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 772,772,373
Number of Sequences: 5470121
Number of extensions: 29566328
Number of successful extensions: 108874
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108844
Number of HSP's gapped (non-prelim): 12
length of query: 216
length of database: 1,894,087,724
effective HSP length: 127
effective length of query: 89
effective length of database: 1,199,382,357
effective search space: 106745029773
effective search space used: 106745029773
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)