R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 142 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|6716785|gb|AAF26742.1|AF220539_1 (AF220539) 40s ribosomal protein S23
[Euphorbia esula]
Length = 142
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 709 (249.6 bits), Expect = 5.5e-69, P = 5.5e-69
Identities = 136/141 (96%), Positives = 136/141 (96%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
MGKTHGMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG KGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141
>gi|1173187|sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12)
>gi|1362041|pir||S56673 ribosomal protein S23.e, cytosolic (clone
RJ3) - garden strawberry >gi|643074|gb|AAA79921.1| (U19940)
putative 40S ribosomal protein s12 [Fragaria x ananassa]
Length = 142
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 89..124
PFAM Ribosomal_S12: Ribosomal protein S12 7..141
PRODOM PD009203: RS23(6) O97248(1) RS12(1) 1..44
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 46..141
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 59..66
__________________
Plus Strand HSPs:
Score = 704 (247.8 bits), Expect = 1.9e-68, P = 1.9e-68
Identities = 135/141 (95%), Positives = 136/141 (96%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
MGKT GMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG KGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141
>gi|11276598|pir||T48317 hypothetical protein F9G14.270 - Arabidopsis thaliana
>gi|7413571|emb|CAB86050.1| (AL162973) putative protein
[Arabidopsis thaliana]
Length = 142
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 672 (236.6 bits), Expect = 4.6e-65, P = 4.6e-65
Identities = 131/141 (92%), Positives = 131/141 (92%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
MGKT GMGA RKLK R QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG KGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGVSLLALFKEKKEKPR
Sbjct: 121 VVKVSGVSLLALFKEKKEKPR 141
>gi|6682246|gb|AAF23298.1|AC016661_23 (AC016661) putative 40S ribosomal protein
S23 [Arabidopsis thaliana]
Length = 136
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 136
0 50 100
Plus Strand HSPs:
Score = 622 (219.0 bits), Expect = 9.1e-60, P = 9.1e-60
Identities = 123/135 (91%), Positives = 124/135 (91%), Frame = +1
Query: 76 MGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 255
MGA RKLK R QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 1 MGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIR 60
Query: 256 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVKXSG 435
KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG KGHAVGDIPGVRFK VK SG
Sbjct: 61 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
Query: 436 VSLLALFKEKKEKPR 480
VSLLALFKEKKEKPR
Sbjct: 121 VSLLALFKEKKEKPR 135
>gi|11121260|emb|CAC14789.1| (AJ291613) 40S ribosomal protein S23 [Lumbricus
rubellus]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 597 (210.2 bits), Expect = 4.1e-57, P = 4.1e-57
Identities = 111/142 (78%), Positives = 122/142 (85%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 234
MGK G+ RKLK+HRR QRW DK YKKSHLG WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFG KGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK + VSLLAL+K+KKE+PR
Sbjct: 121 KVVKVASVSLLALYKQKKERPR 142
>gi|7303214|gb|AAF58277.1| (AE003815) CG8415 gene product [Drosophila
melanogaster]
Length = 216
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 585 (205.9 bits), Expect = 7.6e-56, P = 7.6e-56
Identities = 111/147 (75%), Positives = 123/147 (83%), Frame = +1
Query: 43 QSYITMGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 219
+S+ MGK G+ RK +HRR QRWADK YKK+HLG WK PF G+SHAKGIVLEK+
Sbjct: 69 ESWKIMGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKV 128
Query: 220 GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDI 399
G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFG KGHAVGDI
Sbjct: 129 GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDI 188
Query: 400 PGVRFKXVKXSGVSLLALFKEKKEKPR 480
PGVRFK VK + VSLLAL+KEKKE+PR
Sbjct: 189 PGVRFKVVKVANVSLLALYKEKKERPR 215
>gi|2829742|sp|P90707|RS23_BRUMA 40S RIBOSOMAL PROTEIN S23
>gi|1754684|gb|AAC47632.1| (U81008) ribosomal protein S23 [Brugia
malayi]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 90..125
PFAM Ribosomal_S12: Ribosomal protein S12 7..142
PRODOM PD009203: RS23(6) O97248(1) RS12(1) 1..45
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 47..142
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 60..67
__________________
Plus Strand HSPs:
Score = 582 (204.9 bits), Expect = 1.6e-55, P = 1.6e-55
Identities = 109/142 (76%), Positives = 121/142 (85%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 234
MGK G+ A RKLK+HR+ QRW DK YKK+HLG WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFG KGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK + SL+ALFK KKE+PR
Sbjct: 121 KIVKVANTSLIALFKGKKERPR 142
>gi|4506701 ref|NP_001016.1| ribosomal protein S23 [Homo sapiens] >gi|11417289
ref|XP_004020.1| ribosomal protein S23 [Homo sapiens]
>gi|730647|sp|P39028|RS23_HUMAN 40S RIBOSOMAL PROTEIN S23
>gi|543449|pir||S41955 ribosomal protein S23, cytosolic [validated]
- rat >gi|631360|pir||S42105 ribosomal protein S23, cytosolic -
human >gi|414349|dbj|BAA03400.1| (D14530) ribosomal protein [Homo
sapiens] >gi|453281|emb|CAA54584.1| (X77398) ribosomal protein S23
[Rattus norvegicus]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 577 (203.1 bits), Expect = 5.4e-55, P = 5.4e-55
Identities = 109/142 (76%), Positives = 121/142 (85%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 234
MGK G+ RKL+SHRR Q+W DK YKK+HLG K PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFG KGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK + VSLLAL+K KKE+PR
Sbjct: 121 KVVKVANVSLLALYKGKKERPR 142
>gi|2833303|sp|Q19877|RS23_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S23
>gi|7500074|pir||T21497 hypothetical protein F28D1.7 -
Caenorhabditis elegans >gi|3876374|emb|CAA94601.1| (Z70684)
Similarity to Human 40S ribosomal protein S23 (SW:RS23_HUMAN),
contains similarity to Pfam domain: PF00164 (Ribosomal protein
S12), Score=273.2, E-value=1.1e-78, N=1~cDNA EST EMBL:M80070 comes
from this gene; cDNA EST EMBL:T02217 comes from th>
Length = 143
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 90..125
PFAM Ribosomal_S12: Ribosomal protein S12 7..142
PRODOM PD009203: RS23(6) O97248(1) RS12(1) 1..45
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 47..142
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 60..67
__________________
Plus Strand HSPs:
Score = 576 (202.8 bits), Expect = 6.8e-55, P = 6.8e-55
Identities = 106/142 (74%), Positives = 120/142 (84%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 234
MGK G+ RKLK+HR+ QRW DK YKK+H+G WK PF G+SHAKGIVLEKIG+EAK
Sbjct: 1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFG GHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK + SL+ALFK KKE+PR
Sbjct: 121 KIVKVANTSLIALFKGKKERPR 142
>gi|4493905|emb|CAB39014.1| (AL034558) predicted using hexExon; MAL3P2.27
(PFC0290w), 40S Ribosomal protein S23, len: 146 aa; Similarity to
ribosomal S23 proteins. C.elegans 40S ribosomal protein S23
(WP:F28D1.7) BLAST Score:609, sum P(1) = 1.3e-59; 78% identity in
142 aa overlap
Length = 145
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 567 (199.6 bits), Expect = 6.1e-54, P = 6.1e-54
Identities = 107/141 (75%), Positives = 119/141 (84%), Frame = +1
Query: 61 GKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 237
GK G+ A RKL+ RR QRWADKSYKKSHLG WK PF GSSHAKGIV+EK+ IEAKQ
Sbjct: 4 GKPSGLRAARKLRIRRRTQRWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIEAKQ 63
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSA RKC RVQLIKNGKKI AFVP DGCLN+I+ENDEVL++GFG GH+VGD+PGV+FK
Sbjct: 64 PNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGVKFK 123
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK + VSLLALFKEKKEKPR
Sbjct: 124 VVKVARVSLLALFKEKKEKPR 144
>gi|11595555|emb|CAC18140.1| (AL451012) probable ribosomal protein S28
[Neurospora crassa]
Length = 145
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 554 (195.0 bits), Expect = 1.5e-52, P = 1.5e-52
Identities = 105/141 (74%), Positives = 119/141 (84%), Frame = +1
Query: 61 GKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 237
GK G+ A RKL+++RR QRW+D YKK LG +K PF GSSHAKGIVLEK+G+EAKQ
Sbjct: 4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQ 63
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFG KG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGV LLAL+KEKKEKPR
Sbjct: 124 VVKVSGVGLLALWKEKKEKPR 144
>gi|6321556 ref|NP_011633.1| Ribosomal protein S23A (S28A) (rp37) (YS14);
Rps23ap [Saccharomyces cerevisiae] >gi|6325389 ref|NP_015457.1|
Ribosomal protein S23B (S28B) (rp37) (YS14); Rps23bp [Saccharomyces
cerevisiae] >gi|417716|sp|P32827|RS23_YEAST 40S RIBOSOMAL PROTEIN
S23 (S28) (YS14) (RP37) >gi|422182|pir||A46703 ribosomal protein
S23.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|172498|gb|AAA16235.1| (M96570) ribosomal protein S28
[Saccharomyces cerevisiae] >gi|172500|gb|AAA16236.1| (M96571)
ribosomal protein S28 [Saccharomyces cerevisiae]
>gi|1066485|gb|AAB68273.1| (U40829) 40S ribosomal protein S28
(Swiss Prot. accession number P32827) [Saccharomyces cerevisiae]
>gi|1323191|emb|CAA97128.1| (Z72903) ORF YGR118w [Saccharomyces
cerevisiae]
Length = 145
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 553 (194.7 bits), Expect = 1.9e-52, P = 1.9e-52
Identities = 105/141 (74%), Positives = 119/141 (84%), Frame = +1
Query: 61 GKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 237
GK G+ + RKL+ HRR RWA+ +YKK LG +K PF GSSHAKGIVLEK+GIE+KQ
Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFG KG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGVSLLAL+KEKKEKPR
Sbjct: 124 VVKVSGVSLLALWKEKKEKPR 144
>gi|1850766|dbj|BAA19233.1| (AB001288) ribosomal protein S23 homolog
[Schizosaccharomyces pombe]
Length = 148
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 550 (193.6 bits), Expect = 3.9e-52, P = 3.9e-52
Identities = 104/145 (71%), Positives = 119/145 (82%), Frame = +1
Query: 49 YITMGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGI 225
Y MGK G+ A RKL++HRR +RWAD YKK LG +K PF GSSHAKGIV+EKIG+
Sbjct: 3 YYKMGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGV 62
Query: 226 EAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPG 405
EAKQPNSAIRKC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFG KG A GDIPG
Sbjct: 63 EAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPG 122
Query: 406 VRFKXVKXSGVSLLALFKEKKEKPR 480
VRFK VK +GV L ALF EKKEKPR
Sbjct: 123 VRFKVVKVAGVGLSALFHEKKEKPR 147
>gi|2500455|sp|P79057|RS23_SCHPO 40S RIBOSOMAL PROTEIN S23
>gi|7489981|pir||T38240 40s ribosomal protein s23 - fission yeast
(Schizosaccharomyces pombe) >gi|2330766|emb|CAB11155.1| (Z98559)
40s ribosomal protein s23 [Schizosaccharomyces pombe]
>gi|7363190|emb|CAB83171.1| (AL162692) 40s ribosomal protein s23
[Schizosaccharomyces pombe]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 90..125
PFAM Ribosomal_S12: Ribosomal protein S12 7..142
PRODOM PD009203: RS23(6) O97248(1) RS12(1) 1..45
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 47..139
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 60..67
__________________
Plus Strand HSPs:
Score = 545 (191.8 bits), Expect = 1.3e-51, P = 1.3e-51
Identities = 103/142 (72%), Positives = 118/142 (83%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 234
MGK G+ A RKL++HRR +RWAD YKK LG +K PF GSSHAKGIV+EKIG+EAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFG KG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK +GV L ALF EKKEKPR
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPR 142
>gi|10121617|gb|AAG13288.1|AF266168_1 (AF266168) 40S ribosomal protein S23
[Gillichthys mirabilis]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 545 (191.8 bits), Expect = 1.3e-51, P = 1.3e-51
Identities = 102/142 (71%), Positives = 117/142 (82%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 234
MGK G+ RKL++HRR Q+W DK YKK+HLG K PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+ EENDEVL+AGFG K HAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K V+ + VSLLAL+K KE+P+
Sbjct: 121 KVVEMANVSLLALYKGXKERPK 142
>gi|6006399|emb|CAB56815.1| (AJ249691) ribosomal protein S28 [Aspergillus
niger]
Length = 145
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 534 (188.0 bits), Expect = 1.9e-50, P = 1.9e-50
Identities = 102/141 (72%), Positives = 116/141 (82%), Frame = +1
Query: 61 GKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQ 237
G+ G+ A RKL + RR RWAD YKK LG +K PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 4 GQPRGLNAARKLATTRRENRWADLHYKKRLLGTAYKSSPFGGASHAKGIVLEKVGVEAKQ 63
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFG KG A GDIPGVRFK
Sbjct: 64 PNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFK 123
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK SGV LLAL++EKKEKPR
Sbjct: 124 VVKVSGVGLLALWREKKEKPR 144
>gi|12580742|emb|CAC27060.1| (AJ010592) 40S ribosomal protein S23 [Guillardia
theta]
Length = 145
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 523 (184.1 bits), Expect = 2.8e-49, P = 2.8e-49
Identities = 103/141 (73%), Positives = 117/141 (82%), Frame = +1
Query: 61 GKTHGMGATRKLKSHRRRQRWADKSYKKSH-LGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
GK G+ A RKLK+ R+RQ+W DK Y + H L + P GSSHAKGIV+EKIGIEAKQ
Sbjct: 4 GKPKGICAGRKLKNLRKRQKWNDKDYARKHSLSAKKANPMRGSSHAKGIVIEKIGIEAKQ 63
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSAIRK RVQLIKNGKKIAAFVPNDGCLN+IEENDEVLI+GFG KG +VGDIPGVRFK
Sbjct: 64 PNSAIRKSVRVQLIKNGKKIAAFVPNDGCLNFIEENDEVLISGFGRKGRSVGDIPGVRFK 123
Query: 418 XVKXSGVSLLALFKEKKEKPR 480
VK +GV+LLALF+ KKEKP+
Sbjct: 124 VVKVAGVALLALFRRKKEKPK 144
>gi|9857050|emb|CAC04007.1| (AL391394) probable ribosomal protein S23
[Leishmania major] >gi|9857051|emb|CAC04008.1| (AL391394) probable
ribosomal protein S23 [Leishmania major]
Length = 143
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 515 (181.3 bits), Expect = 2.0e-48, P = 2.0e-48
Identities = 101/142 (71%), Positives = 114/142 (80%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 234
M KT+G A RKL R R RWADK +K++H + K PF GSSHAKGIVLEKIG+ AK
Sbjct: 1 MTKTNGQNAARKLVRLRCRNRWADKGWKRAHTFSARKANPFGGSSHAKGIVLEKIGVGAK 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRF 414
QPNSAIRKC RVQLIKN KKI AFVPNDGCL++IEENDEVL++GFG GHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNDKKIIAFVPNDGCLHFIEENDEVLVSGFGRSGHAVGDIPGVRF 120
Query: 415 KXVKXSGVSLLALFKEKKEKPR 480
K VK S V L AL+++KKEKPR
Sbjct: 121 KIVKVSNVGLYALYRQKKEKPR 142
>gi|1350965|sp|P49201|RS23_ARATH 40S RIBOSOMAL PROTEIN S23 (S12)
Length = 108
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
__________________
Annotated Domains:
PFAM Ribosomal_S12: Ribosomal protein S12 7..108
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 59..66
__________________
Plus Strand HSPs:
Score = 510 (179.5 bits), Expect = 6.7e-48, P = 6.7e-48
Identities = 98/108 (90%), Positives = 99/108 (91%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
MGKT GMGA R +K R QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRNVKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKG 381
PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG KG
Sbjct: 61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKG 108
>gi|133754|sp|P06147|RS12_TETTH 40S RIBOSOMAL PROTEIN S12 >gi|84359|pir||A25699
ribosomal protein TS25 - Tetrahymena thermophila
>gi|10839|emb|CAA28021.1| (X04425) ribosomal protein [Tetrahymena
thermophila] >gi|225326|prf||1212273A ribosomal protein S25
[Tetrahymena thermophila]
Length = 142
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 91..126
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 20..141
PFAM Ribosomal_S12: Ribosomal protein S12 9..142
PRODOM PD009203: RS23(6) O97248(1) RS12(1) 3..46
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 48..141
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 61..68
__________________
Plus Strand HSPs:
Score = 504 (177.4 bits), Expect = 2.9e-47, P = 2.9e-47
Identities = 95/139 (68%), Positives = 110/139 (79%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 237
+GK G+ A RKL HR+ QRWAD + K LG+ W+ PF G+SHAKG+V EKIGIE+KQ
Sbjct: 3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQ 62
Query: 238 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFK 417
PNSA+RKC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG G +GHAVGDIPGVRFK
Sbjct: 63 PNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFK 122
Query: 418 XVKXSGVSLLALFKEKKEK 474
V G+SLLALFK KKEK
Sbjct: 123 VVCVKGISLLALFKGKKEK 141
>gi|133739|sp|P15756|RS12_HALHA 30S RIBOSOMAL PROTEIN S12P (HMAS12)
>gi|81067|pir||S03581 ribosomal protein S12 [similarity] -
Halobacterium salinarum >gi|43545|emb|CAA40429.1| (X57144)
ribosomal protein HhS12 [Halobacterium halobium]
>gi|10582040|gb|AAG20689.1| (AE005138) 30S ribosomal protein S12P;
Rps12p [Halobacterium sp. NRC-1]
Length = 142
Frame 1 hits (HSPs): _________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 89..124
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 16..141
PFAM Ribosomal_S12: Ribosomal protein S12 5..141
PRODOM PD009202: RS12(9) O59229(1) 4..37
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 39..134
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 58..65
__________________
Plus Strand HSPs:
Score = 384 (135.2 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 76/139 (54%), Positives = 98/139 (70%), Frame = +1
Query: 67 THGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPN 243
T+G A RKLK R+++RW+D Y + G K P G+ +GIVLEK+GIEAKQPN
Sbjct: 2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPN 61
Query: 244 SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG-XKGHAVGDIPGVRFKX 420
SAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +K
Sbjct: 62 SAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKV 121
Query: 421 VKXSGVSLLALFKEKKEKP 477
K +GVSL+ L + EKP
Sbjct: 122 EKVNGVSLIELVRGNAEKP 140
>gi|133755|sp|P29161|RS12_THECE 30S RIBOSOMAL PROTEIN S12P
>gi|99243|pir||S18713 ribosomal protein S12 - Thermococcus celer
>gi|48145|emb|CAA47727.1| (X67313) ribosomal protein S12
[Thermococcus celer] >gi|58412|emb|CAA42849.1| (X60305) ribosomal
protein S12 [Thermococcus celer]
Length = 147
Frame 1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
Identities = 79/139 (56%), Positives = 99/139 (71%), Frame = +1
Query: 70 HGMGATRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 246
+G A RKLK R++ RW+D YK+ L E P G+ AKGIVLEKI +EAKQPNS
Sbjct: 8 YGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNS 67
Query: 247 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXV 423
A+RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+K V
Sbjct: 68 AMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
Query: 424 KXSGVSLLALFKEKKEKPR 480
K + VSL L K +KEKPR
Sbjct: 128 KVNRVSLKELVKGRKEKPR 146
>gi|3122791|sp|O27129|RS12_METTH 30S RIBOSOMAL PROTEIN S12P
>gi|7440348|pir||C69007 ribosomal protein S12 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2622154|gb|AAB85546.1|
(AE000876) ribosomal protein S23 (E.coli S12) [Methanothermobacter
thermautotrophicus]
Length = 141
Frame 1 hits (HSPs): _________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 88..123
PFAM Ribosomal_S12: Ribosomal protein S12 4..140
PRODOM PD009202: RS12(9) O59229(1) 3..36
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 38..122
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 57..64
__________________
Plus Strand HSPs:
Score = 377 (132.7 bits), Expect = 8.4e-34, P = 8.4e-34
Identities = 75/137 (54%), Positives = 98/137 (71%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSA 249
G+ A +KLKS R++ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSA
Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSA 62
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXVK 426
IRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G G G ++GDIPGVR+K K
Sbjct: 63 IRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTK 122
Query: 427 XSGVSLLALFKEKKEKP 477
+ VSL + K K EKP
Sbjct: 123 VNNVSLQEMVKGKIEKP 139
>gi|10639237|emb|CAC11239.1| (AL445063) probable ribosomal protein S12
[Thermoplasma acidophilum]
Length = 142
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 74/137 (54%), Positives = 99/137 (72%), Frame = +1
Query: 70 HGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNS 246
+G+ A RKL +R++ RW+D+ YK+ L + K P G+ AKGI +EK+GIEAKQPNS
Sbjct: 3 NGINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNS 62
Query: 247 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXK-GHAVGDIPGVRFKXV 423
AIRKC +VQLIKNG++I AF DG +NYI+E+DEV + G G + G + GDIPGVR+K V
Sbjct: 63 AIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVV 122
Query: 424 KXSGVSLLALFKEKKEK 474
+G+SL L K +KEK
Sbjct: 123 AVNGISLKELVKGRKEK 139
>gi|6647769|sp|O59229|RS12_PYRHO 30S RIBOSOMAL PROTEIN S12P
>gi|7440347|pir||D71031 probable ribosomal protein S12 - Pyrococcus
horikoshii >gi|3257969|dbj|BAA30652.1| (AP000006) 150aa long
hypothetical 30S ribosomal protein S12 [Pyrococcus horikoshii]
Length = 150
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 150
0 50 100
Plus Strand HSPs:
Score = 373 (131.3 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 77/139 (55%), Positives = 98/139 (70%), Frame = +1
Query: 70 HGMGATRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 246
+G A RKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 11 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 70
Query: 247 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXV 423
+RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+K V
Sbjct: 71 GMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 130
Query: 424 KXSGVSLLALFKEKKEKPR 480
K + VSL L K +KEKPR
Sbjct: 131 KVNRVSLKELVKGRKEKPR 149
>gi|7440367|pir||F75182 ribosomal protein S12P PAB0427 - Pyrococcus abyssi
(strain Orsay) >gi|5458051|emb|CAB49541.1| (AJ248284) SSU ribosomal
protein S12P (rps12P) [Pyrococcus abyssi]
Length = 147
Frame 1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 367 (129.2 bits), Expect = 9.6e-33, P = 9.6e-33
Identities = 76/139 (54%), Positives = 97/139 (69%), Frame = +1
Query: 70 HGMGATRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 246
+G A RKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
Query: 247 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXV 423
+RK RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+K V
Sbjct: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
Query: 424 KXSGVSLLALFKEKKEKPR 480
K + VSL L K +KEKPR
Sbjct: 128 KVNRVSLKELVKGRKEKPR 146
>gi|6685926|sp|Q9YAU5|RS12_AERPE 30S RIBOSOMAL PROTEIN S12P
>gi|7440365|pir||H72570 probable ribosomal protein S12 APE1849 -
Aeropyrum pernix (strain K1) >gi|5105540|dbj|BAA80853.1|
(AP000062) 147aa long hypothetical 30S ribosomal protein S12
[Aeropyrum pernix]
Length = 147
Frame 1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 363 (127.8 bits), Expect = 2.5e-32, P = 2.5e-32
Identities = 71/138 (51%), Positives = 101/138 (73%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 249
G+ A RKL+ R + RW+ + ++ L + K P G+ A+GIVLEK+G+EA+QPNSA
Sbjct: 9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSA 68
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXVK 426
+RKC RVQL+KN K + AFVP DG + Y++E+DEV+I G G +G ++GDIPGVR++ V
Sbjct: 69 LRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVM 128
Query: 427 XSGVSLLALFKEKKEKPR 480
+GVSL AL++ KK+KPR
Sbjct: 129 VNGVSLKALWEGKKQKPR 146
>gi|11499476 ref|NP_070717.1| SSU ribosomal protein S12P (rps12P)
[Archaeoglobus fulgidus] >gi|6226058|sp|O28387|RS12_ARCFU 30S
RIBOSOMAL PROTEIN S12P >gi|7440349|pir||C69486 ribosomal protein
S12P - Archaeoglobus fulgidus >gi|2648653|gb|AAB89362.1| (AE000972)
SSU ribosomal protein S12P (rps12P) [Archaeoglobus fulgidus]
Length = 144
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 361 (127.1 bits), Expect = 4.1e-32, P = 4.1e-32
Identities = 74/139 (53%), Positives = 101/139 (72%), Frame = +1
Query: 58 MGKTHGMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 234
MG+ G+ A RKL +R++ RW+D+ + + LG K P G+ A+GIVLEKIGIEA+
Sbjct: 3 MGR--GLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEAR 60
Query: 235 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXK-GHAVGDIPGVR 411
QPNSAIRK RVQLIKNG++I AF P DG +N+I+E+DEV++ G + G ++GDIPGVR
Sbjct: 61 QPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVR 120
Query: 412 FKXVKXSGVSLLALFKEKKEK 474
+K VK + SL L + +KEK
Sbjct: 121 YKVVKVNNTSLRELVRGRKEK 141
>gi|133741|sp|P15355|RS12_HALMO 30S RIBOSOMAL PROTEIN S12P
>gi|81083|pir||S03582 ribosomal protein S12 - Halococcus morrhuae
>gi|43624|emb|CAA40434.1| (X57145) ribosomal protein HcS12
[Halococcus morrhuae]
Length = 142
Frame 1 hits (HSPs): _________________________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 89..124
PFAM Ribosomal_S12: Ribosomal protein S12 5..141
PRODOM PD009202: RS12(9) O59229(1) 4..36
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 39..134
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 58..65
__________________
Plus Strand HSPs:
Score = 360 (126.7 bits), Expect = 5.3e-32, P = 5.3e-32
Identities = 72/138 (52%), Positives = 93/138 (67%), Frame = +1
Query: 70 HGMGATRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 246
+G A RKLK R+ RW+D Y + G E G+ +GIVLEK+GIEAKQPNS
Sbjct: 3 NGKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNS 62
Query: 247 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG-XKGHAVGDIPGVRFKXV 423
AIRKC RVQLIKNG+++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +K
Sbjct: 63 AIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVE 122
Query: 424 KXSGVSLLALFKEKKEKP 477
K +GVSL+ L + EKP
Sbjct: 123 KVNGVSLIELVRGNAEKP 140
>gi|730630|sp|P39573|RS12_SULSO 30S RIBOSOMAL PROTEIN S12P
>gi|7440376|pir||T11745 ribosomal protein S12 - Sulfolobus
solfataricus >gi|809768|emb|CAA54160.1| (X76767) ribosomal protein
S12 [Sulfolobus solfataricus]
Length = 147
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 94..129
PFAM Ribosomal_S12: Ribosomal protein S12 10..146
PRODOM PD009202: RS12(9) O59229(1) 9..42
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 44..143
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 63..70
__________________
Plus Strand HSPs:
Score = 358 (126.0 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 70/137 (51%), Positives = 100/137 (72%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 249
G+ + RKL+ R + R + + YK L + K P G+ A+GIVLEK+GIE++QPNSA
Sbjct: 9 GIYSARKLRLKRLKFRRSQRKYKTKILKLKEKYNPLGGAPMARGIVLEKVGIESRQPNSA 68
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXK-GHAVGDIPGVRFKXVK 426
+RKC RVQL++NG+ + AFVP DG +N+I+E+DEV+I G G G ++GD+PGVR+K +
Sbjct: 69 VRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIN 128
Query: 427 XSGVSLLALFKEKKEKP 477
+GVSL AL+K KK+KP
Sbjct: 129 GNGVSLDALYKGKKQKP 145
>gi|1173193|sp|P11524|RS12_SULAC 30S RIBOSOMAL PROTEIN S12P
Length = 151
Frame 1 hits (HSPs): _____________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 94..129
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 10..150
PFAM Ribosomal_S12: Ribosomal protein S12 10..146
PRODOM PD009202: RS12(9) O59229(1) 9..42
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 44..140
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 63..70
__________________
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 4.8e-31, P = 4.8e-31
Identities = 70/134 (52%), Positives = 99/134 (73%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 249
G+ A RKL+ R + W+ +S+K+ L + K P G+ A+GIVLEK+GIE++QPNSA
Sbjct: 9 GLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSA 68
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXK-GHAVGDIPGVRFKXVK 426
+RK RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG G G ++GD+PGVR+K V
Sbjct: 69 VRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVM 128
Query: 427 XSGVSLLALFKEKK 468
+GVSL AL+K K+
Sbjct: 129 VNGVSLDALYKGKE 142
>gi|2119086|pir||E64430 ribosomal protein S12 - Methanococcus jannaschii
Length = 151
Frame 1 hits (HSPs): ______________________________________________
Annotated Domains: ___ _
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
Entrez modified site: beta-methylthioaspartic a 122
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 66..73
__________________
Plus Strand HSPs:
Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 68/137 (49%), Positives = 92/137 (67%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 249
G A RKL+ R+ RW D +Y + L + K P G+ A+GIV+EK+G+EAKQPNSA
Sbjct: 12 GEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSA 71
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KG-HAVGDIPGVRFKXV 423
IRKC RVQLIKNG+ + AF P + +N+I+E+DEV+I G G KG A GDIPGV++K +
Sbjct: 72 IRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVI 131
Query: 424 KXSGVSLLALFKEKKEK 474
SL L + ++EK
Sbjct: 132 MVGRNSLRELVRGRQEK 148
>gi|3334493|sp|P54062|RS12_METJA 30S RIBOSOMAL PROTEIN S12P
>gi|2826360|gb|AAB99050.1| (U67547) SSU ribosomal protein S12P
(rpsL) [Methanococcus jannaschii]
Length = 148
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 95..130
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 3..150
PFAM Ribosomal_S12: Ribosomal protein S12 10..147
PRODOM PD009202: RS12(9) O59229(1) 9..42
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 44..144
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 63..70
__________________
Plus Strand HSPs:
Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 68/137 (49%), Positives = 92/137 (67%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 249
G A RKL+ R+ RW D +Y + L + K P G+ A+GIV+EK+G+EAKQPNSA
Sbjct: 9 GEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSA 68
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KG-HAVGDIPGVRFKXV 423
IRKC RVQLIKNG+ + AF P + +N+I+E+DEV+I G G KG A GDIPGV++K +
Sbjct: 69 IRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVI 128
Query: 424 KXSGVSLLALFKEKKEK 474
SL L + ++EK
Sbjct: 129 MVGRNSLRELVRGRQEK 145
>gi|133746|sp|P14040|RS12_METVA 30S RIBOSOMAL PROTEIN S12P
>gi|70952|pir||R3MX12 ribosomal protein S12 - Methanococcus
vannielii >gi|44784|emb|CAA34089.1| (X15970) S12 ribosomal protein
(AA 1-147) [Methanococcus vannielii]
Length = 147
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 94..129
PFAM Ribosomal_S12: Ribosomal protein S12 10..146
PRODOM PD009202: RS12(9) O59229(1) 9..42
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 44..125
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 63..70
__________________
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 65/136 (47%), Positives = 87/136 (63%), Frame = +1
Query: 73 GMGATRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSA 249
G A RKL R+ RW Y LG + K P G+ +GIV+EK+G+EAKQPNSA
Sbjct: 9 GEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSA 68
Query: 250 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGX-KGHAVGDIPGVRFKXVK 426
IRKC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVR+K +
Sbjct: 69 IRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLM 128
Query: 427 XSGVSLLALFKEKKEK 474
S+ L + ++EK
Sbjct: 129 VGKNSIRELVRGRQEK 144
>gi|70951|pir||R3UC12 ribosomal protein S12 - Sulfolobus acidocaldarius
>gi|46674|emb|CAA32929.1| (X14818) S12 ribosomal protein (AA 1-118)
[Sulfolobus acidocaldarius]
Length = 118
Frame 1 hits (HSPs): ___________________________________________
Annotated Domains: ____ _
__________________________________________________
Database sequence: | | | | 118
0 50 100
__________________
Annotated Domains:
Entrez modified site: beta-methylthioaspartic a 85
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 30..37
__________________
Plus Strand HSPs:
Score = 309 (108.8 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 59/100 (59%), Positives = 80/100 (80%), Frame = +1
Query: 172 PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 351
P G+ A+GIVLEK+GIE++QPNSA+RK RVQL+KNG+ + AFVP DG +N+I+E+DE
Sbjct: 10 PLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDE 69
Query: 352 VLIAGFGXK-GHAVGDIPGVRFKXVKXSGVSLLALFKEKK 468
V+IAG G G ++GD+PGVR+K V +GVSL AL+K K+
Sbjct: 70 VVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKE 109
>gi|3088342|dbj|BAA25822.1| (AB007158) ribosomal protein S23 [Homo sapiens]
Length = 59
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Plus Strand HSPs:
Score = 263 (92.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 49/59 (83%), Positives = 54/59 (91%), Frame = +1
Query: 304 FVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVKXSGVSLLALFKEKKEKPR 480
FVPNDGCLN+IEENDEVL+AGFG KGHAVGDIPGVRFK VK + VSLLAL+K KKE+PR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>gi|7440350|pir||S72301 ribosomal protein S12 - Plasmodium falciparum plastid
>gi|1171607|emb|CAA64591.1| (X95276) rps12 [Plasmodium falciparum]
Length = 122
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 122
0 50 100
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/79 (44%), Positives = 55/79 (69%), Frame = +1
Query: 196 KGIVLEKIGIEA-KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 372
KGIVL KI I+ K+PNSA+RK A+++L N K++ A++P +G I+E++ VLI
Sbjct: 31 KGIVL-KILIKTPKKPNSALRKVAKIRL-SNNKELLAYIPGEG--KSIQEHNFVLI---- 82
Query: 373 XKGHAVGDIPGVRFKXVKXS 432
KG V D+PG+++K ++ S
Sbjct: 83 -KGGRVKDLPGIKYKIIRGS 101
>gi|6226057|sp|O70089|RS12_AQUAE 30S RIBOSOMAL PROTEIN S12
>gi|7440351|pir||H70457 ribosomal protein S12 - Aquifex aeolicus
>gi|2983320|gb|AAC06910.1| (AE000705) ribosomal protein S12
[Aquifex aeolicus] >gi|2984118|gb|AAC07655.1| (AE000758) ribosomal
protein S12 [Aquifex aeolicus]
Length = 128
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | 128
0 50 100
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 31/87 (35%), Positives = 53/87 (60%), Frame = +1
Query: 166 KKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE 342
K P G +G+ + + K+PNSA+RK ARV+L NG ++ A++P +G + ++E
Sbjct: 20 KAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNGIEVTAYIPGEG--HNLQE 76
Query: 343 NDEVLIAGFGXKGHAVGDIPGVRFKXVK 426
+ VL+ +G V D+PGVR+K ++
Sbjct: 77 HSIVLV-----RGGRVKDLPGVRYKIIR 99
>gi|6755360 ref|NP_036015.1| ribosomal protein, mitochondrial, S12;
mitoribosomal protein s12 [Mus musculus]
>gi|3024585|sp|O35680|RT12_MOUSE 28S RIBOSOMAL PROTEIN S12,
MITOCHONDRIAL PRECURSOR (MPR-S12) (MT-RPS12)
>gi|2370301|emb|CAA72378.1| (Y11682) mitochondrial ribosomal
protein S12 precursor [Mus musculus]
Length = 139
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 38/115 (33%), Positives = 57/115 (49%), Frame = +1
Query: 82 ATRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKC 261
A R + + + R + LG P G KG+VL + K+PNSA RKC
Sbjct: 26 AARSMATLNQMHRLGPRKEPPKRLG-----PTEGRPQLKGVVLRTFIRKPKKPNSANRKC 80
Query: 262 ARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVK 426
RV+L GK+ F+P +G + ++E+ VL+ G G D+PGV+ K V+
Sbjct: 81 CRVRL-STGKEAVCFIPGEG--HTLQEHHVVLVEG----GRTQ-DLPGVKLKVVR 127
>gi|134053|sp|P10735|RT12_DROME 40S RIBOSOMAL PROTEIN S12, MITOCHONDRIAL
PRECURSOR (MT-RPS12) (TECHNICAL KNOCKOUT LOCUS PROTEIN)
>gi|85129|pir||A29622 ribosomal protein S12, mitochondrial - fruit
fly (Drosophila melanogaster) >gi|158602|gb|AAA28935.1| (M19494)
tko gene product (pot.); putative [Drosophila melanogaster]
>gi|6691818|emb|CAB65841.1| (AL133505) EG:BACH59J11.1 [Drosophila
melanogaster] >gi|7290321|gb|AAF45781.1| (AE003424) tko gene
product [alt 1] [Drosophila melanogaster]
Length = 140
Frame 1 hits (HSPs): _________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 140
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 93..128
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 29..139
PFAM Ribosomal_S12: Ribosomal protein S12 30..139
PRODOM PD068362: RT12_DROME 1..50
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 52..139
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 71..78
__________________
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 37/102 (36%), Positives = 58/102 (56%), Frame = +1
Query: 166 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEEN 345
++P G AKG+VL+ + + K+PNSA RKC V+L GK++ A++P G N E N
Sbjct: 49 RQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIGH-NLQEHN 106
Query: 346 DEVLIAGFGXKGHAVGDIPGVRFKXVKXSGVSLLALFKEKKE 471
+++ G + D+PGV+ K V+ GV LA +K +
Sbjct: 107 --IVLCRVGR----LQDVPGVKLKAVR--GVYDLAHVVKKSQ 140
>gi|7388112|sp|P97222|RS12_STRCO 30S RIBOSOMAL PROTEIN S12
>gi|1685024|gb|AAC44743.1| (U60191) ribosomal protein S12
[Streptomyces roseosporus] >gi|1772348|dbj|BAA12096.1| (D83746)
ribosomal protein S12 [Streptomyces lividans]
>gi|7288055|emb|CAB81850.1| (AL161691) 30S ribosomal protein S12
[Streptomyces coelicolor A3(2)]
Length = 123
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 32/89 (35%), Positives = 53/89 (59%), Frame = +1
Query: 166 KKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE 342
K P GS +G+ K+PNSA+RK ARV+L +G ++ A++P +G + ++E
Sbjct: 20 KTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRLT-SGIEVTAYIPGEG--HNLQE 76
Query: 343 NDEVLIAGFGXKGHAVGDIPGVRFKXVKXS 432
+ VL+ +G V D+PGVR+K ++ S
Sbjct: 77 HSIVLV-----RGGRVKDLPGVRYKIIRGS 101
>gi|7388129|sp|Q9X1J3|RS12_THEMA 30S RIBOSOMAL PROTEIN S12
>gi|7440374|pir||B72244 ribosomal protein S12 - Thermotoga maritima
(strain MSB8) >gi|4982071|gb|AAD36572.1|AE001799_4 (AE001799)
ribosomal protein S12 [Thermotoga maritima]
Length = 129
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 31/87 (35%), Positives = 54/87 (62%), Frame = +1
Query: 166 KKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE 342
K P G+ +G+ ++ + K+PNSA+RK ARV+L NG ++ A++P G + ++E
Sbjct: 22 KAPALQGNPQKRGVCIKVSTMTPKKPNSALRKIARVRL-SNGIEVTAYIPGIG--HNLQE 78
Query: 343 NDEVLIAGFGXKGHAVGDIPGVRFKXVK 426
+ VL+ +G V D+PGVR+K ++
Sbjct: 79 HSVVLV-----RGGRVKDLPGVRYKIIR 101
>gi|6594153|emb|CAB63528.1| (AL133505) alternatively spliced form [Drosophila
melanogaster] >gi|10728427|gb|AAG22400.1| (AE003424) tko gene
product [alt 2] [Drosophila melanogaster]
Length = 154
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 37/102 (36%), Positives = 58/102 (56%), Frame = +1
Query: 166 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEEN 345
++P G AKG+VL+ + + K+PNSA RKC V+L GK++ A++P G N E N
Sbjct: 63 RQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIGH-NLQEHN 120
Query: 346 DEVLIAGFGXKGHAVGDIPGVRFKXVKXSGVSLLALFKEKKE 471
+++ G + D+PGV+ K V+ GV LA +K +
Sbjct: 121 --IVLCRVGR----LQDVPGVKLKAVR--GVYDLAHVVKKSQ 154
>gi|7506989|pir||T24380 hypothetical protein T03D8.2 - Caenorhabditis elegans
>gi|3879377|emb|CAB07406.1| (Z92838) contains similarity to Pfam
domain: PF00164 (Ribosomal protein S12), Score=112.7,
E-value=1.9e-30, N=1~cDNA EST EMBL:T00415 comes from this gene
[Caenorhabditis elegans]
Length = 157
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 157
0 50 100 150
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/67 (41%), Positives = 43/67 (64%), Frame = +1
Query: 166 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEEN 345
K +G SH KGIVL+ + K+PNS RKCA V+L G ++ A++PN G + ++E+
Sbjct: 67 KSAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEH 123
Query: 346 DEVLIAG 366
+VL+ G
Sbjct: 124 SQVLVKG 130
>gi|11276594|pir||A82880 ribosomal protein S12 UU525 [imported] - Ureaplasma
urealyticum >gi|6899528|gb|AAF30938.1|AE002151_4 (AE002151)
ribosomal protein S12 [Ureaplasma urealyticum]
Length = 141
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 33/90 (36%), Positives = 55/90 (61%), Frame = +1
Query: 166 KKPFAGSSHAKGIVLEKIG-IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE 342
KK S K V ++G + K+PNSA+RK A+V+L NG ++ A++P +G + ++E
Sbjct: 33 KKTTKNPSPLKSGVCTRVGTMTPKKPNSALRKYAKVRL-SNGFEVLAYIPGEG--HNLQE 89
Query: 343 NDEVLIAGFGXKGHAVGDIPGVRFKXVKXSG 435
+ V+I +G V D+PGVR+ V+ +G
Sbjct: 90 HSVVVI-----RGGRVKDLPGVRYHIVRGAG 115
>gi|10802938|gb|AAG23686.1|AF288091_31 (AF288091) ribosomal protein S12
[Thraustochytrium aureum]
Length = 120
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/88 (35%), Positives = 55/88 (62%), Frame = +1
Query: 181 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 360
G+ KGI ++ I ++PNSA+RK +V ++ N + + A++P +G + ++E+ VL+
Sbjct: 25 GNPMLKGICIKVFTISPRKPNSAVRKVTKV-VLSNKETVIAYIPGEG--HNLQEHASVLV 81
Query: 361 AGFGXKGHAVGDIPGVRFKXVKXS----GVSL 444
KG D+PGVR+K ++ + GVSL
Sbjct: 82 -----KGGKTKDLPGVRYKIIRGALDCAGVSL 108
>gi|133756|sp|P17293|RS12_THETH 30S RIBOSOMAL PROTEIN S12 >gi|70953|pir||R3TW12
ribosomal protein S12 - Thermus aquaticus >gi|10835574|pdb|1FJF|L
Chain L, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit >gi|10835596|pdb|1FJG|L Chain L, Structure Of The Thermus
Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics
Streptomycin, Spectinomycin And Paromomycin
>gi|581812|emb|CAA36418.1| (X52165) ribosomal protein S12 (AA
1-135) [Thermus thermophilus]
Length = 135
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
__________________
Annotated Domains:
BLOCKS BL00055: Ribosomal protein S12 proteins. 68..103
DOMO DM00343: ESCHERICHIACOLIRIBOSOMALPROTEIN 4..125
PFAM Ribosomal_S12: Ribosomal protein S12 4..126
PRINTS 1: Ribosomal S12 motif I - 2 30..45
PRINTS 2: Ribosomal S12 motif II - 45..60
PRINTS 3: Ribosomal S12 motif III - 61..80
PRINTS 4: Ribosomal S12 motif IV - 80..97
PRINTS 5: Ribosomal S12 motif V - 2 97..113
PRINTS 6: Ribosomal S12 motif VI - 113..125
PRODOM PD068358: RS12_THETH 1..25
PRODOM PD000576: RS12(36) RT12(22) RR12(18) 27..123
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 46..53
__________________
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 37/106 (34%), Positives = 62/106 (58%), Frame = +1
Query: 181 GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 360
G+ +G+ + K+PNSA+RK A+V+L +G ++ A++P +G + ++E+ VLI
Sbjct: 29 GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLT-SGYEVTAYIPGEG--HNLQEHSVVLI 85
Query: 361 AGFGXKGHAVGDIPGVRFKXVKXSGVSLLALFKEKKEKPRXXSWGT 498
+G V D+PGVR+ V+ GV A K++K K R +GT
Sbjct: 86 -----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRK-KSRS-KYGT 122
>gi|1911626|gb|AAB50769.1| ribosomal S12 protein, rpsL product [Mycobacterium
avium, strain 35713, Peptide, 124 aa]
Length = 124
Frame 1 hits (HSPs): _____________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | 124
0 50 100
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S12: Ribosomal protein S12 sig 43..50
__________________
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/98 (30%), Positives = 53/98 (54%), Frame = +1
Query: 139 KKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 318
++ +G GS +G+ K+PNSA+RK ARV+L ++ A++P +
Sbjct: 12 RRDKIGKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQ-VEVTAYIPGE 70
Query: 319 GCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVKXS 432
G + ++E+ VL+ +G V D+PGVR+K ++ S
Sbjct: 71 G--HNLQEHSMVLV-----RGGRVKDLPGVRYKIIRGS 101
>gi|11466502 ref|NP_044751.1| ribosomal protein S12 [Reclinomonas americana]
>gi|7440360|pir||S78133 ribosomal protein S12 - Reclinomonas
americana (ATCC 50394) mitochondrion >gi|2258332|gb|AAD11866.1|
(AF007261) ribosomal protein S12 [Reclinomonas americana]
Length = 131
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 39/111 (35%), Positives = 66/111 (59%), Frame = +1
Query: 94 LKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA-KQPNSAIRKCARV 270
LK +++R+ ADK+ ++ K P S K V ++ I + K+PNSA RK ARV
Sbjct: 8 LKINKKRK--ADKNERRKFS----KAPALESCPQKKGVCTRVFIASPKKPNSAKRKVARV 61
Query: 271 QLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVK 426
+L NG+++ A++P +G + ++E+ VLI +G V D+PGV++ V+
Sbjct: 62 RLT-NGQEVTAYIPGEG--HSLQEHSVVLI-----RGGRVKDLPGVKYHIVR 105
>gi|11496546 ref|NP_044557.1| ribosomal protein S12 [Toxoplasma gondii]
>gi|5231249|gb|AAD41143.1|U87145_12 (U87145) ribosomal protein S12
[Toxoplasma gondii]
Length = 121
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 33/96 (34%), Positives = 58/96 (60%), Frame = +1
Query: 139 KKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPND 318
KK N + KP KG+ ++ K+PNSA+RK A+++L KN K+I A++P +
Sbjct: 15 KKKQSYNFYTKP-----QIKGLCIKVFTRTPKKPNSALRKIAKIKL-KNKKEILAYIPGE 68
Query: 319 GCLNYIEENDEVLIAGFGXKGHAVGDIPGVRFKXVK 426
G + +++++ VLI KG V D+PG+++K ++
Sbjct: 69 G--HALQDHNFVLIK----KGR-VQDLPGIKYKVIR 97
WARNING: HSPs involving 142 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.158 0.637
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.149 0.491
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.323 0.140 0.431
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.153 0.565
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.148 0.451
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.362 0.162 0.608
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 193 187 10. 76 3 12 22 0.12 34
31 0.12 37
+2 0 194 187 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 194 185 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 194 186 10. 76 3 12 22 0.12 34
31 0.12 37
-2 0 194 185 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 193 184 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 192
No. of states in DFA: 600 (59 KB)
Total size of DFA: 225 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 206.60u 1.11s 207.71t Elapsed: 00:01:08
Total cpu time: 206.67u 1.15s 207.82t Elapsed: 00:01:08
Start: Wed Jan 16 19:13:42 2002 End: Wed Jan 16 19:14:50 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000