BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN0115
(98 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19703463|ref|NP_603025.1| hypothetical protein FN0115 [F... 113 3e-24
gi|88854350|ref|ZP_01129017.1| hypothetical protein A20C1_0... 58 2e-07
gi|118590472|ref|ZP_01547874.1| hypothetical protein SIAM61... 57 3e-07
gi|47095426|ref|ZP_00233036.1| conserved hypothetical prote... 55 1e-06
gi|83856853|ref|ZP_00950382.1| hypothetical protein CA2559_... 55 1e-06
gi|18767036|gb|AAL79233.1| unknown [Saccharomyces cerevisiae] 54 3e-06
>gi|19703463|ref|NP_603025.1| hypothetical protein FN0115 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713543|gb|AAL94324.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 98
Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats.
Identities = 97/98 (98%), Positives = 98/98 (100%)
Query: 1 LIELTVEVGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVV 60
+IELTVEVGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVV
Sbjct: 1 MIELTVEVGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVV 60
Query: 61 PKSIPIILLILSSYNLSIYIYFLHTITIAGLITLPFII 98
PKSIPIILLILSSYNLSIYIYFLHTITIAGLITLPFII
Sbjct: 61 PKSIPIILLILSSYNLSIYIYFLHTITIAGLITLPFII 98
>gi|88854350|ref|ZP_01129017.1| hypothetical protein A20C1_09039 [marine actinobacterium
PHSC20C1]
gi|88816158|gb|EAR26013.1| hypothetical protein A20C1_09039 [marine actinobacterium
PHSC20C1]
Length = 98
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 42/65 (64%)
Query: 1 LIELTVEVGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVV 60
+ + V VTA FA+SPT TSP + TTDGVV PS F + V PPS TAT EFVV
Sbjct: 1 MTDAIVRSTLVTAWRFAVSPTRTSPSLVNATTDGVVRIPSAFAMTVGSPPSRTATTEFVV 60
Query: 61 PKSIP 65
P+SIP
Sbjct: 61 PRSIP 65
>gi|118590472|ref|ZP_01547874.1| hypothetical protein SIAM614_02816 [Stappia aggregata IAM 12614]
gi|118436935|gb|EAV43574.1| hypothetical protein SIAM614_02816 [Stappia aggregata IAM 12614]
Length = 98
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 42/66 (63%)
Query: 8 VGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVVPKSIPII 67
VGFVTA A PT SP S T DGVV APS F I + PS+TAT EFVVP+SIP+
Sbjct: 3 VGFVTAWRLAGWPTRRSPSSEKATIDGVVRAPSAFSITLESLPSMTATHEFVVPRSIPMT 62
Query: 68 LLILSS 73
I +S
Sbjct: 63 FAISAS 68
>gi|47095426|ref|ZP_00233036.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|47016247|gb|EAL07170.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
Length = 79
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/74 (62%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 9 GFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVVPKSIPIIL 68
G V A FA SPT SP L TT+GVV APS GII+A PPS TAT EFVVPKSIPIIL
Sbjct: 7 GLVIAARFATSPTWRSPF-LKPTTEGVVRAPSGLGIILASPPSNTATAEFVVPKSIPIIL 65
Query: 69 LILSSYNLSIYIYF 82
LI+ S S+ I++
Sbjct: 66 LIVISSCYSVIIFY 79
>gi|83856853|ref|ZP_00950382.1| hypothetical protein CA2559_07160 [Croceibacter atlanticus
HTCC2559]
gi|83850653|gb|EAP88521.1| hypothetical protein CA2559_07160 [Croceibacter atlanticus
HTCC2559]
Length = 90
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 44/64 (68%)
Query: 1 LIELTVEVGFVTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVV 60
LIE TV VG VTACLFA SPT SP S T+GVV PS FGI V PSITATQ VV
Sbjct: 7 LIEETVFVGLVTACLFAGSPTLISPPSTKAMTEGVVRLPSAFGITVGSLPSITATQLLVV 66
Query: 61 PKSI 64
PKSI
Sbjct: 67 PKSI 70
>gi|18767036|gb|AAL79233.1| unknown [Saccharomyces cerevisiae]
Length = 104
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 37/56 (66%)
Query: 11 VTACLFAISPTTTSPLSLIFTTDGVVLAPSEFGIIVALPPSITATQEFVVPKSIPI 66
+T C A SPT SP + TTDGVVL PS F II+ PSI AT E VVPKSIPI
Sbjct: 1 MTDCRLAGSPTKRSPSLVKATTDGVVLEPSAFSIILGTLPSIIATAELVVPKSIPI 56
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.328 0.144 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,436,565
Number of Sequences: 5470121
Number of extensions: 12174532
Number of successful extensions: 44768
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44759
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 1,894,087,724
effective HSP length: 67
effective length of query: 31
effective length of database: 1,527,589,617
effective search space: 47355278127
effective search space used: 47355278127
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)