Reference SNP(refSNP) Cluster Report: rs1205352

Reference SNP(refSNP) Cluster Report: rs1205352

refSNP ID: rs1205352
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	87/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_000687.1:c.973-2058T>C
NT_028392.5:g.3071590A>G

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss8474571 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1205352 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss1729868	KWOK\|OVLP-000925-293602	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	10/05/00	10/10/03	87	Genomic	97 %
ss8474571	SC_SNP\|NT_028392.4_3042266	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	04/17/03	10/10/03	114	Genomic	unknown
ss16902131	CSHL-HAPMAP\|CSHL-HuAA-200402.chr20.NT_028392.4_3042266	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	02/17/04	03/04/04	120	Genomic	unknown
ss17700642	CSHL-HAPMAP\|CSHL-HuCC-200402.chr20.NT_028392.4_3042266	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	02/19/04	03/04/04	120	Genomic	unknown
ss41405142	ABI\|hCV27167211	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	07/17/05	07/17/05	126	Genomic	unknown
ss78168021	HGSV\|Cor12878_SNV_20070510.chr20_32339159	fwd/T	A/G	aattacaggtgtgtgccaccgtgcctggcc	gaagggggtctcttgagctgggctgagaag	10/17/07	10/18/07	129	Genomic	unknown

Fasta sequence (Legend)

 GATGGATGCT GCACTAGGGG TCTGTACTAA GAGTGTGGGC ATTGCCTCTG CCAGAGGAGC
 TGGCCAGGAA GGGGGTCTCT TTTTTATTTT ATTAAttttt tttttttttt tttttctgag
 acggagtctt actctgtcat ccaggctgga gtacagtggt gtgatctcag ctcactgcaa
 cctccacctc ctgggttcaa gcgattctcc tgcctcagcc tccagagtag ctgggactat
 acgcatgagc caccatgccc agctaatttt ttgtattttt agtagagaca gggtttgacc
 atgttggcca ggctggtctc aaactcctga cctcaagtga tccgcctgcc tcggcctccc
 aaagtgctgg aattacaggt gtgtgccacc gtgcctggcc
 R
 GAAGGGGGTC TCTTGAGCTG GGCTGAGAAG ATGAACAAGG AGAAGGGCAT GTGTTCTGTT
 CCAGACAAAT GCAGCTGTCT GGACAGATGA GCAGAAGTAG GAGCTGCAGT GGGTATTCAG
 GGAGTGGTCA ATTATGGCCT GAGTACAGAG GCCCTTGAGA GGACGGACAA GAGATAATGT
 TGGGCAGAAG GTTGGCAAGA CTGTCAAGGA TGTTGAGGGT GGGCATAGAG TCCAGCTTTG
 GAGGGCAGCT TGGCAGAAAG GTGCCCATCA CCCCAATGTA GCAGGTTTCA CCTGTGATGC
 CTTTGCAAAA AGGAGGTCTA GACAGATGGC TGTCAGGGGT GTGGCTGCCA CAGAAGCACG
 CCCTGGCCAC CCCCACACTG TGATGAGTGC CAGGCCTTCT

GeneView

GeneView via analysis of contig annotation: AHCY S-adenosylhomocysteine hydrolase

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_028392->NM_000687

function

HuRef

NW_001838664->NM_000687

function

Celera

NW_927339->NM_000687

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_028392->NM_000687->NP_000678	3071590	reverse	intron

HuRef	NW_001838664->NM_000687->NP_000678	2022692	forward	intron

Celera	NW_927339->NM_000687->NP_000678	3128084	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1205352 maps exactly once on NCBI human chromosome 20

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
20	NW_927339.1	3128084	29624975	plus	G	alt_assembly_1	Celera	Celera	view	400
20	NW_001838664.2	2022692	29657298	minus	C	alt_assembly_8	HuRef	HuRef	view	400
20	NT_028392.5	3071590	32339159	plus	A	ref_assembly	reference	reference	view	400

NCBI Resource Links

Submitter-Referenced
GenBank
NT_028392 AL356299.16

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL356299.16 NC_000020.9	AL137253.8

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .