Reference SNP(refSNP) Cluster Report: rs1871544

Reference SNP(refSNP) Cluster Report: rs1871544

refSNP ID: rs1871544
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	92/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_032902.5:c.908-35G>A
NT_037704.4:g.293602G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2747867 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1871544 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss2747867	TSC-CSHL\|TSC0872897		fwd/T	A/G	ccacctccacctgggggagaggacaggcgg	gagggcgcccctgacgcctgcgcccacttc	01/02/01	10/10/03	92	Genomic			unknown

Fasta sequence (Legend)

 GCACGTCGCA GCCGCCAACG GGTTCAGCGA GGCGGCTGCC CTGCTGCTGG AACACCGAGC
 CAGCCTGAGC GCTAAGGACC AAGACGGTTG GGAGCCGCTG CACGCCGCGG CCTACTGGGG
 CCAGGTGAGT GCGGGCGGGA GCAGGTGGGA GGGGGCTTCC AGCGCAGCAG TCTGCAGCTC
 CGGCCTGCCG TCCACAGGTG CCCCTGGTGG AGCTGCTCGT GGCGCACGGT GCCGACCTGA
 ACGCAAAGTC CCTGATGGAC GAGACGCCCC TTGGTGAGCT TGCGGAGCCC ACCTCCACCT
 GGGGGAGAGG ACAGGCGG
 R
 GAGGGCGCCC CTGACGCCTG CGCCCACTTC TCAGATGTGT GCGGGGACGA GGAGGTGCGG
 GCCAAGCTGC TGGAGCTGAA GCACAAGCAC GACGCCCTCC TGCGCGCCCA GAGCCGCCAG
 CGCTCCTTGC TGCGCCGCCG CACCTCCAGC GCCGGCAGCC GCGGGTGAGC GCCGCCCCCA
 GCAGGCCCCG CCCCGGGCTT GGCCCCGCGG ACGTCAGCCC CGGGCGGAGT GCCAGCCGAA
 CTGGGGGCAG AGTCCGAGGG GGTGGGCGGG GTCCTCCGG

GeneView

GeneView via analysis of contig annotation: PPP1R16A protein phosphatase 1, regulatory (inhibitor) subunit 16A

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_037704->NM_032902

function

HuRef

NW_001839142->NM_032902

function

Celera

NW_924018->NM_032902

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_037704->NM_032902->NP_116291	293602	forward	intron

HuRef	NW_001839142->NM_032902->NP_116291	579329	reverse	intron

Celera	NW_924018->NM_032902->NP_116291	2808850	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1871544 maps exactly once on NCBI human chromosome 8

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
8	NW_001839142.2	579329	140839272	minus	C	alt_assembly_8	HuRef	HuRef	view	318
8	NW_924018.1	2808850	141901662	plus	G	alt_assembly_1	Celera	Celera	view	318
8	NT_037704.4	293602	145696998	plus	G	ref_assembly	reference	reference	view	318

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AC084125.9 NC_000008.9	AC022505.17

UniGene Cluster ID
521937

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .