BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A10H03_CONSENSUS
        (465 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 2 Sequences     : less than 2 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 729 116 |==========================================================
   6310 613  83 |=========================================
   3980 530 119 |===========================================================
   2510 411  49 |========================
   1580 362  69 |==================================
   1000 293  40 |====================
    631 253  24 |============
    398 229  25 |============
    251 204  12 |======
    158 192  13 |======
    100 179  20 |==========
   63.1 159  13 |======
   39.8 146   7 |===
   25.1 139   6 |===
   15.8 133   6 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 127  <<<<<<<<<<<<<<<<<
   10.0 127   3 |=
   6.31 124   7 |===
   3.98 117   6 |===
   2.51 111   9 |====
   1.58 102   2 |=
   1.00 100   0 |
   0.63 100   2 |=
   0.40  98   3 |=
   0.25  95   2 |=
   0.16  93   3 |=
   0.10  90   6 |===
  0.063  84   1 |:
  0.040  83   0 |
  0.025  83   0 |
  0.016  83   1 |:
  0.010  82   1 |:
 0.0063  81   1 |:
 0.0040  80   0 |
 0.0025  80   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|2500521|sp|Q40468|IF4Z_TOBACEUKARYOTIC INITIATION ... +3   404  1.1e-36   1
gi|1170508|sp|P41381|IF48_TOBACEUKARYOTIC INITIATION ... +3   400  3.0e-36   1
gi|2119935|pir||S52020translation initiation factor e... +3   400  3.0e-36   1
gi|2119933|pir||S52018translation initiation factor e... +3   394  1.3e-35   1
gi|2500517|sp|Q40471|IF49_TOBACEUKARYOTIC INITIATION ... +3   393  1.7e-35   1
gi|1170511|sp|P41382|IF4U_TOBACEUKARYOTIC INITIATION ... +3   391  2.7e-35   1
gi|2500519|sp|Q40466|IF4X_TOBACEUKARYOTIC INITIATION ... +3   391  2.7e-35   1
gi|2500520|sp|Q40467|IF4Y_TOBACEUKARYOTIC INITIATION ... +3   391  2.7e-35   1
gi|2500516|sp|Q40470|IF47_TOBACEUKARYOTIC INITIATION ... +3   391  2.7e-35   1
gi|2119934|pir||S52019translation initiation factor e... +3   391  2.7e-35   1
gi|2119937|pir||S52022translation initiation factor e... +3   391  2.7e-35   1
gi|2119938|pir||S52023translation initiation factor e... +3   391  2.7e-35   1
gi|2500518|sp|Q40465|IF4V_TOBACEUKARYOTIC INITIATION ... +3   390  3.5e-35   1
gi|2119932|pir||S52017translation initiation factor e... +3   389  4.5e-35   1
gi|1170506|sp|P41379|IF42_NICPLEUKARYOTIC INITIATION ... +3   381  3.1e-34   1
gi|2341061|gb|AAB67607.1|(U73459) translational initi... +3   367  9.6e-33   1
gi|1170509|sp|P41378|IF4A_WHEATEUKARYOTIC INITIATION ... +3   365  1.6e-32   1
gi|2286151|gb|AAB64289.1|(AF007580) translation initi... +3   362  3.2e-32   1
gi|547712|sp|P35683|IF4A_ORYSAEUKARYOTIC INITIATION F... +3   359  6.7e-32   1
gi|1170503|sp|P41376|IF41_ARATHEUKARYOTIC INITIATION ... +3   354  2.3e-31   1
gi|2500522|sp|Q41741|IF4A_MAIZEEUKARYOTIC INITIATION ... +3   353  2.9e-31   1
gi|1170505|sp|P41377|IF42_ARATHEUKARYOTIC INITIATION ... +3   352  3.7e-31   1
gi|12381896|dbj|BAB21258.1|(AB046414) eukaryotic init... +3   330  8.0e-29   1
gi|11358803|pir||T51347RNA helicase RH23 [imported] -... +3   327  1.7e-28   1
gi|12323781|gb|AAG51861.1|AC010926_24(AC010926) putat... +3   323  4.4e-28   1
gi|124217|sp|P27639|IF4A_CAEELEUKARYOTIC INITIATION F... +3   166  1.5e-17   2
gi|1688326|gb|AAB36962.1|(U78759) IfdA [Dictyostelium... +3   195  6.3e-14   1
gi|11602713|emb|CAC18543.1|(AJ292369) translation ini... +3   149  8.7e-14   2
gi|50814|emb|CAA26842.1|(X03039) put. eIF-4A (aa 1-39... +3   187  4.6e-13   1
gi|266336|sp|P29562|IF41_RABITEUKARYOTIC INITIATION F... +3   187  4.8e-13   1
gi|7443501|pir||S13269translation initiation factor e... +3   187  4.9e-13   1
gi|90964|pir||JS0039translation initiation factor eIF... +3   187  5.2e-13   1
gi|4503529ref|NP_001407.1| eukaryotic translation ini... +3   187  5.2e-13   1
gi|90965|pir||S00986translation initiation factor eIF... +3   187  5.2e-13   1
gi|7297048|gb|AAF52317.1|(AE003612) eIF-4a gene produ... +3   185  7.7e-13   1
gi|418925|pir||S30278translation initiation factor eI... +3   185  8.4e-13   1
gi|446778|prf||1912301Ainitiation factor eIF-4A [Dros... +3   185  8.4e-13   1
gi|12644381|sp|Q02748|IF4A_DROMEEUKARYOTIC INITIATION... +3   185  8.4e-13   1
gi|2370593|emb|CAA73168.1|(Y12591) translation initia... +3   185  9.0e-13   1
gi|5679692|emb|CAB51741.1|(AJ245475) RNA helicase-1 [... +3   182  1.7e-12   1
gi|11277760|pir||T51737RNA helicase RH2 [imported] - ... +3   143  1.9e-12   2
gi|2370591|emb|CAA73167.1|(Y12590) translation initia... +3   181  2.4e-12   1
gi|7305019ref|NP_038534.1| eukaryotic translation ini... +3   181  2.4e-12   1
gi|11435040ref|XP_003189.1| TR00065598_p [Homo sapien... +3   181  2.4e-12   1
gi|4503531ref|NP_001958.1| eukaryotic translation ini... +3   181  2.4e-12   1
gi|673433|emb|CAA40268.1|(X56953) protein synthesis i... +3   181  2.4e-12   1
gi|1708418|sp|P47943|IF4A_SCHPOEUKARYOTIC INITIATION ... +3   179  3.6e-12   1
gi|10720033|sp|O02494|IF4A_CRYPVEUKARYOTIC INITIATION... +3   177  6.4e-12   1
gi|7299019|gb|AAF54221.1|(AE003678) CG7483 gene produ... +3   174  1.3e-11   1
gi|8569479|pdb|1QDE|AChain A, Crystal Structure Of Th... +3   163  4.0e-11   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|2500521             |         _________________________________________
gi|1170508             |         _________________________________________
gi|2119935             |         _________________________________________
gi|2119933             |         _________________________________________
gi|2500517             |         _________________________________________
gi|1170511             |         _________________________________________
gi|2500519             |         _________________________________________
gi|2500520             |         _________________________________________
gi|2500516             |         _________________________________________
gi|2119934             |         _________________________________________
gi|2119937             |         _________________________________________
gi|2119938             |         _________________________________________
gi|2500518             |         _________________________________________
gi|2119932             |         _________________________________________
gi|1170506             |         _________________________________________
gi|2341061             |         _________________________________________
gi|1170509             |         _________________________________________
gi|2286151             |         _________________________________________
gi|547712              |         _________________________________________
gi|1170503             |         _________________________________________
gi|2500522             |         _________________________________________
gi|1170505             |         _________________________________________
gi|12381896            |         _________________________________________
gi|11358803            |        __________________________________________
gi|12323781            |         _________________________________________
gi|124217              |              ______________________              
gi|1688326             |                  ________________________________
gi|11602713            |                  __________________              
gi|50814               |                   _______________________________
gi|266336              |                   _______________________________
gi|7443501             |                   _______________________________
gi|90964               |                   _______________________________
gi|4503529             |                   _______________________________
gi|90965               |                   _______________________________
gi|7297048             |                   _______________________________
gi|418925              |                   _______________________________
gi|446778              |                   _______________________________
gi|12644381            |                   _______________________________
gi|2370593             |                   _______________________________
gi|5679692             |                    ______________________________
gi|11277760            |                    ________________              
gi|2370591             |                   _______________________________
gi|7305019             |                   _______________________________
gi|11435040            |                   _______________________________
gi|4503531             |                   _______________________________
gi|673433              |                   _______________________________
gi|1708418             |                   _______________________________
gi|10720033            |                __________________________________
gi|7299019             |                  ________________________________
gi|8569479             |                   _______________________________
                        __________________________________________________
Query sequence:        |               |               |                | | 155
                       0              50             100              150


Locus_ID                Frame 1 Hits
gi|2500521             |                               ________________   
gi|1170508             |                               ________________   
gi|2119935             |                               ________________   
gi|2119933             |                               ________________   
gi|2500517             |                               ________________   
gi|1170511             |                               ________________   
gi|2500519             |                               ________________   
gi|2500520             |                               ________________   
gi|2500516             |                               ________________   
gi|2119934             |                               ________________   
gi|2119937             |                               ________________   
gi|2119938             |                               ________________   
gi|2500518             |                               ________________   
gi|2119932             |                               ________________   
gi|1170506             |                               ________________   
gi|2341061             |                               ________________   
gi|1170509             |                               ________________   
gi|2286151             |                               ________________   
gi|547712              |                               ________________   
gi|1170503             |                               ________________   
gi|2500522             |                               ________________   
gi|1170505             |                               ________________   
gi|12381896            |                               ________________   
gi|124217              |                                   ____________   
gi|11602713            |                                 ______________   
gi|11277760            |                                 ______________   
                        __________________________________________________
Query sequence:        |               |               |                | | 155
                       0              50             100              150


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 77 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|2500521|sp|Q40468|IF4Z_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-15)
            (EIF4A-15) >gi|485945|emb|CAA55739.1| (X79138) NeIF-4A15 [Nicotiana
            tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..29
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..390
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 404 (142.2 bits), Expect = 1.1e-36, P = 1.1e-36
 Identities = 84/125 (67%), Positives = 90/125 (72%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAG APEGSQFDA Q+D+KM++LLS+DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGAAPEGSQFDARQFDTKMNELLSADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 125 (44.0 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 28/45 (62%), Positives = 29/45 (64%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QL Y L    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVL 114


 >gi|1170508|sp|P41381|IF48_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-8 (EIF-4A-8)
            (EIF4A-8) >gi|2119931|pir||S60244 translation initiation factor
            eIF-4A.8, anther-specific - common tobacco
            >gi|475219|emb|CAA55639.1| (X79004) translation initiation factor
            (eIF-4A) [Nicotiana tabacum] >gi|475221|emb|CAA55640.1| (X79005)
            translation initiation factor (eIF-4A) [Nicotiana tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD151797: IF4A(2) IF48(1) O24449(1)      1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..392
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 400 (140.8 bits), Expect = 3.0e-36, P = 3.0e-36
 Identities = 83/125 (66%), Positives = 90/125 (72%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MA LAP+G+QFDA QYDSKM+DLL++DG+DFFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MARLAPDGAQFDARQYDSKMNDLLAADGKDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 134 (47.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVL 114


 >gi|2119935|pir||S52020  translation initiation factor eIF-4A.15 - common
            tobacco
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:                _           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 400 (140.8 bits), Expect = 3.0e-36, P = 3.0e-36
 Identities = 83/125 (66%), Positives = 90/125 (72%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAG APEGSQFDA QYD+KM++LLS++GQ+FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGAAPEGSQFDARQYDTKMNELLSAEGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLAYELLECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 124 (43.7 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 27/45 (60%), Positives = 29/45 (64%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QL Y L    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLAYELLECQALVL 114


 >gi|2119933|pir||S52018  translation initiation factor eIF-4A.11 - common
            tobacco
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:                _           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 394 (138.7 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 82/125 (65%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ Q+FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2500517|sp|Q40471|IF49_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9)
            (EIF4A-9) >gi|485951|emb|CAA55736.1| (X79135) NeIF-4A9 [Nicotiana
            tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..29
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..390
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 82/125 (65%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAG APEGSQFDA QYDSKM++LL+++GQDFFTSYDEVY SFDAMGL+ENLLRGIYAYGF
Sbjct:     1 MAGAAPEGSQFDARQYDSKMTELLNAEGQDFFTSYDEVYHSFDAMGLKENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 132 (46.5 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVL 114


 >gi|1170511|sp|P41382|IF4U_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-10)
            (EIF4A-10) >gi|1362118|pir||S55898 translation initiation factor
            eIF-4A.10 - common tobacco >gi|475213|emb|CAA55642.1| (X79009)
            translation initiation factor (eIF-4A) [Nicotiana tabacum]
            >gi|475216|emb|CAA55641.1| (X79008) translation initiation factor
            (eIF-4A) [Nicotiana tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..390
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2500519|sp|Q40466|IF4X_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-13 (EIF-4A-13)
            >gi|485941|emb|CAA55741.1| (X79140) NeIF-4A13 [Nicotiana tabacum]
            Length = 355

Frame  3 hits (HSPs):   __________________                                
Frame  1 hits (HSPs):            _______                                  
Annotated Domains:             _____________________________     _________
                        __________________________________________________
Database sequence:     |                    |                     |       | 355
                       0                  150                   300
__________________

Annotated Domains:
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..355
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2500520|sp|Q40467|IF4Y_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-14)
            (EIF4A-14) >gi|485943|emb|CAA55742.1| (X79141) NeIF-4A14 [Nicotiana
            tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..392
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2500516|sp|Q40470|IF47_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7)
            (EIF4A-7) >gi|485949|emb|CAA55738.1| (X79137) NeIF-4A7 [Nicotiana
            tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..390
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2119934|pir||S52019  translation initiation factor eIF-4A.7 - common tobacco
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:                _           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2119937|pir||S52022  translation initiation factor eIF-4A.13 - common
            tobacco  (fragment)
            Length = 355

Frame  3 hits (HSPs):   __________________                                
Frame  1 hits (HSPs):            _______                                  
Annotated Domains:                 __             __                      
                        __________________________________________________
Database sequence:     |                    |                     |       | 355
                       0                  150                   300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2119938|pir||S52023  translation initiation factor eIF-4A.14 - common
            tobacco
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:                _           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 391 (137.6 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2500518|sp|Q40465|IF4V_TOBAC  EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-11)
            (EIF4A-11) >gi|485987|emb|CAA55737.1| (X79136) NeIF-4A11 [Nicotiana
            tabacum]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..392
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 390 (137.3 bits), Expect = 3.5e-35, P = 3.5e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFDA QYD+KM++LL ++ Q+FFTSYDEVY+SFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYESFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 138 (48.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 30/45 (66%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVL 114


 >gi|2119932|pir||S52017  translation initiation factor eIF-4A.9 - common tobacco
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:                _           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 389 (136.9 bits), Expect = 4.5e-35, P = 4.5e-35
 Identities = 81/125 (64%), Positives = 89/125 (71%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAG APEGSQFDA QYDSKM++LL+++GQ+FFTSYDEVY SFDAMGL+ENLLRGIYAYGF
Sbjct:     1 MAGAAPEGSQFDARQYDSKMTELLNAEGQEFFTSYDEVYHSFDAMGLKENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYELLECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 132 (46.5 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/45 (62%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDY L    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYELLECQALVL 114


 >gi|1170506|sp|P41379|IF42_NICPL  EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2)
            (EIF4A-2) >gi|100275|pir||S22578 translation initiation factor
            eIF-4A - curled-leaved tobacco >gi|19697|emb|CAA43513.1| (X61205)
            nicotiana eukaryotic  translation initiation factor 4A [Nicotiana
            plumbaginifolia]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 59..97
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 99..124
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 183..206
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    84..91
   Entrez               other site: DEAD BOX.                    189..192
   PFAM                 DEAD: DEAD/DEAH box helicase             53..256
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD004599: IF42(2)                        1..30
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        32..138
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        143..243
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     252..392
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  84..91
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 187..195
__________________


  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.1e-34, P = 3.1e-34
 Identities = 79/125 (63%), Positives = 88/125 (70%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAG APEGSQFDA Q+D+KM++LL ++ ++FFTSYDEVYDSFDAMGLQENLLRGIYAYGF
Sbjct:     1 MAGSAPEGSQFDARQFDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120

Query:   450 APQIE 464
             A QIE
Sbjct:   121 AQQIE 125

 Score = 137 (48.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/45 (64%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDYSL    ALVL
Sbjct:    70 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVL 114


 >gi|2341061|gb|AAB67607.1|  (U73459) translational initiation factor eIF-4A [Zea
            mays]
            Length = 414

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
                        __________________________________________________
Database sequence:     |                 |                  |             | 414
                       0               150                300

  Plus Strand HSPs:

 Score = 367 (129.2 bits), Expect = 9.6e-33, P = 9.6e-33
 Identities = 78/126 (61%), Positives = 87/126 (69%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSS-DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+APEGSQFDA  YDSKM +LLS+ + ++FFTSYDEV++SFD MGLQENLLRGIYAYG
Sbjct:     1 MAGMAPEGSQFDAKHYDSKMQELLSTGETEEFFTSYDEVFESFDDMGLQENLLRGIYAYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126

 Score = 134 (47.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 115


 >gi|1170509|sp|P41378|IF4A_WHEAT  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|478306|pir||JN0839 translation initiation factor eIF-4A
            - wheat
            Length = 414

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                 |                  |             | 414
                       0               150                300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 60..98
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 100..125
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 184..207
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 333..378
   Entrez               np-binding site: ATP (BY SIMILARITY).    85..92
   Entrez               other site: DEAD BOX.                    190..193
   PFAM                 DEAD: DEAD/DEAH box helicase             54..257
   PFAM                 helicase_C: Helicases conserved C-termin 294..375
   PRODOM               PD151797: IF4A(2) IF48(1) O24449(1)      1..31
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        33..139
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        144..244
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     253..393
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  85..92
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 188..196
__________________


  Plus Strand HSPs:

 Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 78/126 (61%), Positives = 86/126 (68%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSS-DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+APEGSQFDA  YDSKM +LLS  + ++FFTSYDEV++SFD MGLQENLLRGIYAYG
Sbjct:     1 MAGMAPEGSQFDAKNYDSKMQELLSQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126

 Score = 134 (47.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 115


 >gi|2286151|gb|AAB64289.1|  (AF007580) translation initiation factor [Zea mays]
            Length = 414

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
                        __________________________________________________
Database sequence:     |                 |                  |             | 414
                       0               150                300

  Plus Strand HSPs:

 Score = 362 (127.4 bits), Expect = 3.2e-32, P = 3.2e-32
 Identities = 77/126 (61%), Positives = 86/126 (68%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSS-DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+APEGSQFDA  YDSKM +LLS+ + ++FFTSYDEV++SFD MGLQENLLRGIY YG
Sbjct:     1 MAGMAPEGSQFDAKHYDSKMQELLSTGETEEFFTSYDEVFESFDDMGLQENLLRGIYRYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126

 Score = 134 (47.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 115


 >gi|547712|sp|P35683|IF4A_ORYSA  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|542153|pir||S38358 translation initiation factor eIF-4A
            - rice >gi|303844|dbj|BAA02152.1| (D12627) eukaryotic initiation
            factor 4A [Oryza sativa] >gi|12381900|dbj|BAB21260.1| (AB046416)
            eukaryotic initiation factor 4A [Oryza sativa]
            Length = 413

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 60..98
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 100..125
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 184..207
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 332..377
   Entrez               np-binding site: ATP (BY SIMILARITY).    85..92
   Entrez               other site: DEAD BOX.                    190..193
   PFAM                 DEAD: DEAD/DEAH box helicase             54..257
   PFAM                 helicase_C: Helicases conserved C-termin 293..374
   PRODOM               PD151797: IF4A(2) IF48(1) O24449(1)      1..31
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        33..139
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        144..244
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     253..392
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  85..92
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 188..196
__________________


  Plus Strand HSPs:

 Score = 359 (126.4 bits), Expect = 6.7e-32, P = 6.7e-32
 Identities = 76/126 (60%), Positives = 86/126 (68%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSS-DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+APEGSQFDA  YDSKM +LL+  + ++FFTSYDEV++SFD MGLQENLLRGIYAYG
Sbjct:     1 MAGMAPEGSQFDAKHYDSKMQELLNQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           +  C  L   PT  
Sbjct:    61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126

 Score = 132 (46.5 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 28/45 (62%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY++    ALVL
Sbjct:    71 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVL 115


 >gi|1170503|sp|P41376|IF41_ARATH  EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1)
            (EIF4A-1) >gi|322503|pir||JC1452 translation initiation factor
            eIF-4A1 - Arabidopsis thaliana >gi|16554|emb|CAA46188.1| (X65052)
            eukaryotic translation  initiation factor 4A-1 [Arabidopsis
            thaliana] >gi|11994363|dbj|BAB02322.1| (AB019229) eukaryotic
            translation initiation factor; RNA helicase [Arabidopsis thaliana]
            Length = 412

Frame  3 hits (HSPs):   _______________                                   
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 412
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 58..96
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 98..123
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 182..205
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 331..376
   DOMO                 DM01290: TRANSLATIONINITIATIONFACTOREIF- 1..411
   Entrez               np-binding site: ATP (BY SIMILARITY).    83..90
   Entrez               other site: DEAD BOX.                    188..191
   PFAM                 DEAD: DEAD/DEAH box helicase             52..255
   PFAM                 helicase_C: Helicases conserved C-termin 292..373
   PRODOM               PD004599: IF42(2)                        1..29
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        31..137
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        142..242
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     251..391
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  83..90
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 186..194
__________________


  Plus Strand HSPs:

 Score = 354 (124.6 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 76/125 (60%), Positives = 87/125 (69%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQD-FFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG APEG+QFDA Q+D K++++L  +GQD FFTSYD+V++SFDAMGLQENLLRGIYAYG
Sbjct:     1 MAGSAPEGTQFDARQFDQKLNEVL--EGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYG 58

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRE 118

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   119 LAQQIE 124

 Score = 132 (46.5 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 28/45 (62%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLD+SL    ALVL
Sbjct:    69 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVL 113


 >gi|2500522|sp|Q41741|IF4A_MAIZE  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|603190|gb|AAA82736.1| (U17979) translation initiation
            factor eIF-4A [Zea mays]
            Length = 410

Frame  3 hits (HSPs):   _______________                                   
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 410
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 56..94
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 96..121
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 180..203
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 329..374
   Entrez               np-binding site: ATP (BY SIMILARITY).    81..88
   Entrez               other site: DEAD BOX.                    186..189
   PFAM                 DEAD: DEAD/DEAH box helicase             50..253
   PFAM                 helicase_C: Helicases conserved C-termin 290..371
   PRODOM               PD200848: IF4A_MAIZE                     1..27
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        29..135
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        140..240
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     249..389
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  81..88
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 184..192
__________________


  Plus Strand HSPs:

 Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 76/125 (60%), Positives = 84/125 (67%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 269
             MAGLAPEGSQFD  QYD KM ++L+   +DFFTSYD+V +SFD+MGLQENLLRGIYAYGF
Sbjct:     1 MAGLAPEGSQFDDKQYDKKMQEILT---EDFFTSYDDVCESFDSMGLQENLLRGIYAYGF 57

Query:   270 EKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXL 449
             EKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  L
Sbjct:    58 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 117

Query:   450 APQIE 464
             A QIE
Sbjct:   118 AQQIE 122

 Score = 134 (47.2 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 29/45 (64%), Positives = 30/45 (66%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    ALVL
Sbjct:    67 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 111


 >gi|1170505|sp|P41377|IF42_ARATH  EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2)
            (EIF4A-2) >gi|322504|pir||JC1453 translation initiation factor
            eIF-4A2 - Arabidopsis thaliana >gi|16556|emb|CAA46189.1| (X65053)
            eukaryotic translation  initiation factor 4A-2 [Arabidopsis
            thaliana] >gi|4585969|gb|AAD25605.1|AC005287_7 (AC005287)
            Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
            Length = 412

Frame  3 hits (HSPs):   _______________                                   
Frame  1 hits (HSPs):           ______                                    
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 412
                       0                150               300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 58..96
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 98..123
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 182..205
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 331..376
   Entrez               np-binding site: ATP (BY SIMILARITY).    83..90
   Entrez               other site: DEAD BOX.                    188..191
   PFAM                 DEAD: DEAD/DEAH box helicase             52..255
   PFAM                 helicase_C: Helicases conserved C-termin 292..373
   PRODOM               PD004599: IF42(2)                        1..29
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        31..137
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        142..242
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     251..391
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  83..90
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 186..194
__________________


  Plus Strand HSPs:

 Score = 352 (123.9 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 76/125 (60%), Positives = 86/125 (68%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQD-FFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG APEG+QFD  Q+D +++++L  DGQD FFTSYDEV++SFDAMGLQENLLRGIYAYG
Sbjct:     1 MAGSAPEGTQFDTRQFDQRLNEVL--DGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYG 58

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRE 118

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   119 LAQQIE 124

 Score = 133 (46.8 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 28/45 (62%), Positives = 31/45 (68%), Frame = +1

Query:   298 G*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             G  P  + L  IQQAQSGTGK  TFCSG+L QLDY+L    ALVL
Sbjct:    69 GIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVL 113


 >gi|12381896|dbj|BAB21258.1|  (AB046414) eukaryotic initiation factor 4A [Oryza
            sativa] >gi|12381898|dbj|BAB21259.1| (AB046415) eukaryotic
            initiation factor 4A [Oryza sativa]
            Length = 414

Frame  3 hits (HSPs):   ________________                                  
Frame  1 hits (HSPs):           ______                                    
                        __________________________________________________
Database sequence:     |                 |                  |             | 414
                       0               150                300

  Plus Strand HSPs:

 Score = 330 (116.2 bits), Expect = 8.0e-29, P = 8.0e-29
 Identities = 71/126 (56%), Positives = 81/126 (64%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLL-SSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+APEGSQFDA  YDSKM +LL   D ++    YD++++SFD MGLQENLLRGIYAYG
Sbjct:     1 MAGMAPEGSQFDAKHYDSKMQELLHQGDNENSARRYDDLFESFDDMGLQENLLRGIYAYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQ+RGIVPFCKGLDV         +   F           L  C  L   PT  
Sbjct:    61 FEKPSAIQKRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126

 Score = 134 (47.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/47 (61%), Positives = 31/47 (65%), Frame = +1

Query:   292 KGG*FPSARDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             K G  P  + L  IQQAQSGTGK  TFCSGIL QLDY L    +LVL
Sbjct:    69 KRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVL 115


 >gi|11358803|pir||T51347  RNA helicase RH23 [imported] - Arabidopsis thaliana
            (fragment) >gi|3776021|emb|CAA09211.1| (AJ010472) RNA helicase
            [Arabidopsis thaliana]
            Length = 441

Frame  3 hits (HSPs):     ________________                                
                        __________________________________________________
Database sequence:     |                |                |                | 441
                       0              150              300

  Plus Strand HSPs:

 Score = 327 (115.1 bits), Expect = 1.7e-28, P = 1.7e-28
 Identities = 67/130 (51%), Positives = 88/130 (67%), Frame = +3

Query:    78 STQVMAGLAPEGSQFDAXQYDSKMSDLLSSDGQD-FFTSYDEVYDSFDAMGLQENLLRGI 254
             +++VMAG+A +G+Q+D  Q+D+KM+ +L  +G++ F+T+YDEV D+FDAM LQ +LLRGI
Sbjct:    24 NSKVMAGMASDGTQYDPRQFDTKMNAILGEEGEETFYTNYDEVCDTFDAMELQPDLLRGI 83

Query:   255 YAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFT 434
             YAYGFEKPSAIQQRGI+PFCKGLDV         +   F         + L  C  L   
Sbjct:    84 YAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLA 143

Query:   435 PTPXLAPQIE 464
             PT  LA QIE
Sbjct:   144 PTRELAQQIE 153


 >gi|12323781|gb|AAG51861.1|AC010926_24  (AC010926) putative Eukaryotic
            initiation factor 4A; 30924-32477 [Arabidopsis thaliana]
            Length = 414

Frame  3 hits (HSPs):   ________________                                  
                        __________________________________________________
Database sequence:     |                 |                  |             | 414
                       0               150                300

  Plus Strand HSPs:

 Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
 Identities = 67/126 (53%), Positives = 84/126 (66%), Frame = +3

Query:    90 MAGLAPEGSQFDAXQYDSKMSDLLSSDGQD-FFTSYDEVYDSFDAMGLQENLLRGIYAYG 266
             MAG+A +G+Q+D  Q+D+KM+ +L  +G++ F+T+YDEV DSFDAM LQ +LLRGIYAYG
Sbjct:     1 MAGMASDGTQYDPRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYG 60

Query:   267 FEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPX 446
             FEKPSAIQQRGI+PFCKGLDV         +   F         + L  C  L   PT  
Sbjct:    61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRE 120

Query:   447 LAPQIE 464
             LA QIE
Sbjct:   121 LAQQIE 126


 >gi|124217|sp|P27639|IF4A_CAEEL  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|283547|pir||S26281 translation initiation factor eIF-4A
            homolog - Caenorhabditis elegans >gi|6700|emb|CAA78102.1| (Z12116)
            unnamed protein product [Caenorhabditis elegans]
            >gi|532818|gb|AAA21170.1| (U13876) C. elegans eukaryotic initiation
            factor 4a (EMBL:Z12116) [Caenorhabditis elegans]
            Length = 402

Frame  3 hits (HSPs):   _________                                         
Frame  1 hits (HSPs):           _____                                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 402
                       0                150                300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 48..86
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 88..113
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 172..195
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 321..366
   DOMO                 DM01290: TRANSLATIONINITIATIONFACTOREIF- 1..401
   Entrez               np-binding site: ATP (BY SIMILARITY).    73..80
   Entrez               other site: DEAD BOX.                    178..181
   PFAM                 DEAD: DEAD/DEAH box helicase             42..245
   PFAM                 helicase_C: Helicases conserved C-termin 282..363
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        23..127
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        132..232
   PRODOM               PD190276: IF4A(1) Q20935(1)              234..270
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     273..381
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  73..80
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 176..184
__________________


  Plus Strand HSPs:

 Score = 166 (58.4 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 35/64 (54%), Positives = 45/64 (70%), Frame = +3

Query:   138 DSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 317
             D  +S ++ +DG     +YD+V +SFD M L+E LLRGIY +GFEKPSAIQ+R IVP   
Sbjct:     7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTT 65

Query:   318 GLDV 329
             G DV
Sbjct:    66 GKDV 69

 Score = 85 (29.9 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 18/34 (52%), Positives = 22/34 (64%), Frame = +1

Query:   331 IQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             I QAQSGTGK  TF   IL ++D+   H  ALV+
Sbjct:    70 IAQAQSGTGKTATFSVSILQRIDHEDPHVQALVM 103


 >gi|1688326|gb|AAB36962.1|  (U78759) IfdA [Dictyostelium discoideum]
            Length = 395

Frame  3 hits (HSPs):    _____________                                    
                        __________________________________________________
Database sequence:     |                  |                  |            | 395
                       0                150                300

  Plus Strand HSPs:

 Score = 195 (68.6 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 41/96 (42%), Positives = 58/96 (60%), Frame = +3

Query:   177 DFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNW 356
             +F ++YD++ DSFD M L ++LLRGIY+YGFEKPSAIQQR I+P  KG D+ +       
Sbjct:    14 EFESTYDKIVDSFDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTG 73

Query:   357 EXGYFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
             +   F +   +   + +  C  L   PT  LA QI+
Sbjct:    74 KTATFTVGILSRIDISVLKCQALIIAPTRELAQQIQ 109


 >gi|11602713|emb|CAC18543.1|  (AJ292369) translation initiation factor 4A-like
            protein [Echinococcus multilocularis]
            Length = 403

Frame  3 hits (HSPs):     _______                                         
Frame  1 hits (HSPs):           _____                                     
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
 Identities = 32/52 (61%), Positives = 39/52 (75%), Frame = +3

Query:   177 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDV 329
             +F TS D +V  +FD+M L+E+LLRGIYAYGFE+PSAIQQR I     G DV
Sbjct:    19 EFETSEDVDVLPTFDSMNLREDLLRGIYAYGFERPSAIQQRAIKQIILGRDV 70

 Score = 67 (23.6 bits), Expect = 8.7e-14, Sum P(2) = 8.7e-14
 Identities = 18/39 (46%), Positives = 20/39 (51%), Frame = +1

Query:   316 RDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             RD+  I QAQSGTGK  T     L  LD  L     L+L
Sbjct:    68 RDV--IAQAQSGTGKTATLAIASLQVLDIQLRDTQVLIL 104


 >gi|50814|emb|CAA26842.1|  (X03039) put. eIF-4A (aa 1-390) [Mus musculus]
            >gi|50819|emb|CAA26845.1| (X03040) put. eIF-4A (aa 1-390) [Mus
            musculus]
            Length = 390

Frame  3 hits (HSPs):    ____________                                     
                        __________________________________________________
Database sequence:     |                   |                  |           | 390
                       0                 150                300

  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:     9 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 68

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    69 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 101


 >gi|266336|sp|P29562|IF41_RABIT  EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I)
            (EIF4A-I)
            Length = 394

Frame  3 hits (HSPs):    _____________                                    
Annotated Domains:          __________________________    ___________     
                        __________________________________________________
Database sequence:     |                  |                  |            | 394
                       0                150                300
__________________

Annotated Domains:
   Entrez               np-binding site: ATP (BY SIMILARITY).    64..71
   Entrez               other site: DEAD BOX.                    170..173
   PFAM                 DEAD: DEAD/DEAH box helicase             33..237
   PFAM                 helicase_C: Helicases conserved C-termin 274..355
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  64..71
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 168..176
__________________


  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    13 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 72

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    73 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 105


 >gi|7443501|pir||S13269  translation initiation factor eIF-4A.I - rabbit
            (fragment)
            Length = 398

Frame  3 hits (HSPs):     ____________                                    
                        __________________________________________________
Database sequence:     |                  |                  |            | 398
                       0                150                300

  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    17 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 76

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    77 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 109


 >gi|90964|pir||JS0039  translation initiation factor eIF-4A - mouse
            >gi|556308|gb|AAA50407.1| (L36611) protein synthesis initiation
            factor 4A [Mus musculus]
            Length = 406

Frame  3 hits (HSPs):     _____________                                   
Annotated Domains:               __           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 406
                       0                150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  76..83
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 180..188
__________________


  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 84

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    85 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 117


 >gi|4503529  ref|NP_001407.1| eukaryotic translation initiation factor 4A,
            isoform 1 [Homo sapiens] >gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC
            INITIATION FACTOR 4A-I (EIF-4A-I) (EIF4A-I) >gi|422959|pir||S33681
            translation initiation factor eIF-4A.I - human
            >gi|7428973|pir||FIMS4A translation initiation factor eIF-4A I -
            mouse >gi|219403|dbj|BAA02897.1| (D13748) eukaryotic initiation
            factor 4AI [Homo sapiens] >gi|2943740|dbj|BAA25075.1| (AB011595)
            eIF4A [Mus musculus] >gi|227238|prf||1617105B initiation factor 4AI
            [Oryctolagus cuniculus]
            Length = 406

Frame  3 hits (HSPs):     _____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 406
                       0                150               300

  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 84

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    85 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 117


 >gi|90965|pir||S00986  translation initiation factor eIF-4A I - mouse
            Length = 407

Frame  3 hits (HSPs):      ____________                                   
Annotated Domains:               __           __                          
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300
__________________

Annotated Domains:
   Entrez               region: nucleotide-binding motif A (P-lo 77..84
   Entrez               binding site: ATP (Lys)                  83
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  77..84
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 181..189
__________________


  Plus Strand HSPs:

 Score = 187 (65.8 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 43/93 (46%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    26 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 85

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L L     L   PT  LA QI+
Sbjct:    86 TFAISILQQIELDLKATQALVLAPTRELAQQIQ 118


 >gi|7297048|gb|AAF52317.1|  (AE003612) eIF-4a gene product [Drosophila
            melanogaster]
            Length = 389

Frame  3 hits (HSPs):    ____________                                     
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 41/93 (44%), Positives = 53/93 (56%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             +++ EVYD+FD M L+E LLRGIY YGFEKPSAIQQR I+P  +G DV +       +  
Sbjct:     9 STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTA 68

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         +  C  L   PT  LA QI+
Sbjct:    69 TFSIAILQQIDTSIRECQALILAPTRELATQIQ 101


 >gi|418925|pir||S30278  translation initiation factor eIF-4A - fruit fly
            (Drosophila melanogaster) >gi|311997|emb|CAA48790.1| (X69045)
            eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
            melanogaster]
            Length = 402

Frame  3 hits (HSPs):     _____________                                   
Annotated Domains:               _           __                           
                        __________________________________________________
Database sequence:     |                  |                  |            | 402
                       0                150                300
__________________

Annotated Domains:
   Entrez               region: nucleotide-binding motif A (P-lo 74..81
   Entrez               binding site: ATP (Lys)                  80
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  74..81
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 176..184
__________________


  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 41/93 (44%), Positives = 53/93 (56%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             +++ EVYD+FD M L+E LLRGIY YGFEKPSAIQQR I+P  +G DV +       +  
Sbjct:    23 STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTA 82

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         +  C  L   PT  LA QI+
Sbjct:    83 TFSIAILQQIDTSIRECQALILAPTRELATQIQ 115


 >gi|446778|prf||1912301A  initiation factor eIF-4A [Drosophila melanogaster]
            Length = 402

Frame  3 hits (HSPs):     _____________                                   
                        __________________________________________________
Database sequence:     |                  |                  |            | 402
                       0                150                300

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 41/93 (44%), Positives = 53/93 (56%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             +++ EVYD+FD M L+E LLRGIY YGFEKPSAIQQR I+P  +G DV +       +  
Sbjct:    23 STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTA 82

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         +  C  L   PT  LA QI+
Sbjct:    83 TFSIAILQQIDTSIRECQALILAPTRELATQIQ 115


 >gi|12644381|sp|Q02748|IF4A_DROME  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|5052532|gb|AAD38596.1|AF145621_1 (AF145621) eukaryotic
            initiation factor-4a [Drosophila melanogaster]
            Length = 403

Frame  3 hits (HSPs):     _____________                                   
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 41/93 (44%), Positives = 53/93 (56%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             +++ EVYD+FD M L+E LLRGIY YGFEKPSAIQQR I+P  +G DV +       +  
Sbjct:    23 STWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTA 82

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         +  C  L   PT  LA QI+
Sbjct:    83 TFSIAILQQIDTSIRECQALILAPTRELATQIQ 115


 >gi|2370593|emb|CAA73168.1|  (Y12591) translation initiation factor eIF4A II
            [Xenopus laevis]
            Length = 413

Frame  3 hits (HSPs):      ____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 42/93 (45%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    31 SNWNEIVDSFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTA 90

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L +     L   PT  LA QI+
Sbjct:    91 TFAISILQQIELDMKATQALMLAPTRELAQQIQ 123


 >gi|5679692|emb|CAB51741.1|  (AJ245475) RNA helicase-1 [Plasmodium cynomolgi]
            Length = 398

Frame  3 hits (HSPs):     ____________                                    
                        __________________________________________________
Database sequence:     |                  |                  |            | 398
                       0                150                300

  Plus Strand HSPs:

 Score = 182 (64.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 42/90 (46%), Positives = 53/90 (58%), Frame = +3

Query:   195 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXGYFL 374
             +E+ D+FDA+GL E LLRGIY+YGFEKPSAIQQRGI P   G D          +   F+
Sbjct:    19 EEIVDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFV 78

Query:   375 LWYSAXT*L*LD--PCPGLGFTPTPXLAPQIE 464
             +  S+   +  D   C  L   PT  LA QI+
Sbjct:    79 I--SSLQLINYDYVACQALILAPTRELAQQIQ 108


 >gi|11277760|pir||T51737  RNA helicase RH2 [imported] - Arabidopsis thaliana
            >gi|3775985|emb|CAA09195.1| (AJ010456) RNA helicase [Arabidopsis
            thaliana] >gi|9294443|dbj|BAB02563.1| (AP000417) RNA helicase
            [Arabidopsis thaliana]
            Length = 391

Frame  3 hits (HSPs):    _______                                          
Frame  1 hits (HSPs):          _____                                      
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300

  Plus Strand HSPs:

 Score = 143 (50.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 26/44 (59%), Positives = 35/44 (79%), Frame = +3

Query:   198 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDV 329
             E   SF+ MG++E++LRG+Y YGFEKPSAIQQR ++P  +G DV
Sbjct:    15 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDV 58

 Score = 60 (21.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 16/39 (41%), Positives = 20/39 (51%), Frame = +1

Query:   316 RDLMFIQQAQSGTGKXXTFCSGILXQLDYSLTHAXALVL 432
             RD+  I QAQSGTGK       +   +D S     AL+L
Sbjct:    56 RDV--IAQAQSGTGKTSMIALSVCQVVDTSSREVQALIL 92


 >gi|2370591|emb|CAA73167.1|  (Y12590) translation initiation factor eIF4A I
            [Xenopus laevis]
            Length = 406

Frame  3 hits (HSPs):     _____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 406
                       0                150               300

  Plus Strand HSPs:

 Score = 181 (63.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 41/93 (44%), Positives = 53/93 (56%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ D FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    25 SNWNEIVDGFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTA 84

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       L +     L   PT  LA QI+
Sbjct:    85 TFAISILQQIELDMKATQALVLAPTRELAQQIQ 117


 >gi|7305019  ref|NP_038534.1| eukaryotic translation initiation factor 4A2 [Mus
            musculus] >gi|50823|emb|CAA31025.1| (X12507) initiation factor 4AII
            (AA 1 - 407) [Mus musculus]
            Length = 407

Frame  3 hits (HSPs):      ____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Plus Strand HSPs:

 Score = 181 (63.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       +       L   PT  LA QI+
Sbjct:    86 TFAISILQQLEIEFKETQALVLAPTRELAQQIQ 118


 >gi|11435040  ref|XP_003189.1| TR00065598_p [Homo sapiens]
            >gi|2507330|sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II
            (EIF-4A-II) (EIF4A-II) >gi|90966|pir||S00985 translation initiation
            factor eIF-4A II - mouse >gi|673434|emb|CAA40269.1| (X56953)
            protein synthesis initiation factor 4A [Mus musculus]
            >gi|227239|prf||1617105C initiation factor 4AII [Oryctolagus
            cuniculus]
            Length = 407

Frame  3 hits (HSPs):      ____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Plus Strand HSPs:

 Score = 181 (63.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       +       L   PT  LA QI+
Sbjct:    86 TFAISILQQLEIEFKETQALVLAPTRELAQQIQ 118


 >gi|4503531  ref|NP_001958.1| eukaryotic translation initiation factor 4A,
            isoform 2 [Homo sapiens] >gi|2500513|sp|Q14240|IF42_HUMAN
            EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II) (EIF4A-II)
            >gi|485388|dbj|BAA06336.1| (D30655) eukaryotic initiation factor
            4AII [Homo sapiens]
            Length = 407

Frame  3 hits (HSPs):      ____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Plus Strand HSPs:

 Score = 181 (63.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       +       L   PT  LA QI+
Sbjct:    86 TFAISILQQLEIEFKETQALVLAPTRELAQQIQ 118


 >gi|673433|emb|CAA40268.1|  (X56953) protein synthesis initiation factor 4A [Mus
            musculus]
            Length = 408

Frame  3 hits (HSPs):      ____________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 408
                       0                150               300

  Plus Strand HSPs:

 Score = 181 (63.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DV +       +  
Sbjct:    27 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 86

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +       +       L   PT  LA QI+
Sbjct:    87 TFAISILQQLEIEFKETQALVLAPTRELAQQIQ 119


 >gi|1708418|sp|P47943|IF4A_SCHPO  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|7428974|pir||S71745 translation initiation factor
            eIF-4A [similarity] - fission yeast (Schizosaccharomyces pombe)
            >gi|1321961|emb|CAA56772.1| (X80796) translation initiation factor
            eIF-4A [Schizosaccharomyces pombe] >gi|2222814|gb|AAB61679.1|
            (L40627) cell cycle control protein eIF-4A [Schizosaccharomyces
            pombe] >gi|6318257|emb|CAB60237.1| (AL132828) eukaryotic initiation
            factor 4a [Schizosaccharomyces pombe]
            Length = 392

Frame  3 hits (HSPs):    _____________                                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 392
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00039A: DEAD-box subfamily ATP-depende 38..76
   BLOCKS               BL00039B: DEAD-box subfamily ATP-depende 78..103
   BLOCKS               BL00039C: DEAD-box subfamily ATP-depende 162..185
   BLOCKS               BL00039D: DEAD-box subfamily ATP-depende 311..356
   DOMO                 DM01290: TRANSLATIONINITIATIONFACTOREIF- 1..391
   Entrez               np-binding site: ATP (BY SIMILARITY).    63..70
   Entrez               other site: DEAD BOX.                    168..171
   PFAM                 DEAD: DEAD/DEAH box helicase             32..235
   PFAM                 helicase_C: Helicases conserved C-termin 272..353
   PRODOM               PD000085: RECG(12) IF4A(9) MFD(9)        12..115
   PRODOM               PD000276: IF4A(9) HE47(6) DEAD(5)        122..222
   PRODOM               PD000033: POLG(55) UVRB(18) RECG(10)     231..371
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  63..70
   PROSITE              DEAD_ATP_HELICASE: DEAD-box subfamily AT 166..174
__________________


  Plus Strand HSPs:

 Score = 179 (63.0 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 42/93 (45%), Positives = 51/93 (54%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             T+YDEV D+FD M L+  LLRGIYAYGFE+PSAIQQR I+P     DV +       +  
Sbjct:    12 TNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTA 71

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         L  C  L   PT  LA QI+
Sbjct:    72 TFSISVLQKIDTSLKQCQALILAPTRELAQQIQ 104


 >gi|10720033|sp|O02494|IF4A_CRYPV  EUKARYOTIC INITIATION FACTOR 4A (EIF-4A)
            (EIF4A) >gi|2150025|gb|AAB58726.1| (AF001211) translation
            initiation factor [Cryptosporidium parvum]
            >gi|2155304|gb|AAB58799.1| (AF001378) translation initiation factor
            [Cryptosporidium parvum]
            Length = 405

Frame  3 hits (HSPs):    ______________                                   
                        __________________________________________________
Database sequence:     |                  |                 |             | 405
                       0                150               300

  Plus Strand HSPs:

 Score = 177 (62.3 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 41/102 (40%), Positives = 58/102 (56%), Frame = +3

Query:   159 LSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSA 338
             ++S G+   ++YDE+ + F+A+ L+ +LLRGI+AYGFEKPSAIQQRGI P   G D    
Sbjct:    16 VASTGE-IESNYDEIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQ 74

Query:   339 GSVWNWEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
                   +   F++         L+ C  L   PT  LA QI+
Sbjct:    75 AQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQ 116


 >gi|7299019|gb|AAF54221.1|  (AE003678) CG7483 gene product [Drosophila
            melanogaster]
            Length = 399

Frame  3 hits (HSPs):    _____________                                    
                        __________________________________________________
Database sequence:     |                  |                  |            | 399
                       0                150                300

  Plus Strand HSPs:

 Score = 174 (61.3 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/97 (46%), Positives = 54/97 (55%), Frame = +3

Query:   177 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWN 353
             +F TS D EV  +F+AM L+E LLRGIYAYGFEKPSAIQQR I P  KG DV +      
Sbjct:    15 EFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGT 74

Query:   354 WEXGYFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              +   F +         L     L  +PT  LA QI+
Sbjct:    75 GKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQ 111


 >gi|8569479|pdb|1QDE|A  Chain A, Crystal Structure Of The Atpase Domain Of
            Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The
            Prototype Of The Dead Box Protein Family
            Length = 224

Frame  3 hits (HSPs):    _____________________                            
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 224
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 163 (57.4 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 39/93 (41%), Positives = 51/93 (54%), Frame = +3

Query:   186 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVYSAGSVWNWEXG 365
             T+YD+V   FD M L ENLLRG++ YGFE+PSAIQQR I+P  +G DV +       + G
Sbjct:     7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 66

Query:   366 YFLLWYSAXT*L*LDPCPGLGFTPTPXLAPQIE 464
              F +         +     L   PT  LA QI+
Sbjct:    67 TFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 99


WARNING:  HSPs involving 77 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.94

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.330   0.146   0.468  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.374   0.168   0.678  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.334   0.141   0.438  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.357   0.156   0.534  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.347   0.154   0.530  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.345   0.149   0.484  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      154       150       10.  74 3  12 22  0.092   34
                                                    30  0.12    36
   +2      0      154       148       10.  74 3  12 22  0.091   34
                                                    30  0.11    36
   +1      0      155       148       10.  74 3  12 22  0.091   34
                                                    30  0.11    36
   -1      0      155       149       10.  74 3  12 22  0.092   34
                                                    30  0.12    36
   -2      0      154       147       10.  74 3  12 22  0.12    33
                                                    30  0.11    36
   -3      0      154       149       10.  74 3  12 22  0.092   34
                                                    30  0.12    36


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  127
  No. of states in DFA:  592 (58 KB)
  Total size of DFA:  173 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  140.74u 1.23s 141.97t  Elapsed: 00:00:24
  Total cpu time:  140.78u 1.26s 142.04t  Elapsed: 00:00:24
  Start:  Mon Oct  1 23:16:36 2001   End:  Mon Oct  1 23:17:00 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000