Program Code
From AAAWiki
Since some groups will be producing multiple annotation sets using different methods, each annotation set will be assigned a three-letter identifier. Feel free to add your identifier here if you understand wiki table formats (otherwise, contact Michael Eisen who will enter your code). Please keep IDs in alphabetical order.
| ID | Group ID | Description |
|---|---|---|
| ATT | TRNA | Aragorn-tRNAscan-TFAM |
| CGW | EISE | Eisen Group GeneWise Pipeline |
| CGM | EISE | Eisen Group GeneMapper Pipeline |
| CEX | EISE | Eisen Group Exonerate Pipeline |
| GMP | PACH | GeneMapper annotations |
| GNO | NCBI | |
| GPI | OXFD | |
| MAN | Manual Annotations | |
| SNP | DGIL | SNAP gene predictor |
| SNO | DGIL | SNAP predictions + protein homology guidance |
| GID | RGUI | Geneid predictions |
| GUT | RGUI | Geneid-U12 predictions |
| SGP | RGUI | SGP2 predictions |
| CNA | BATZ | CONTRAST predictions without the use of alignments |
| CON | BATZ | CONTRAST predictions |
| INF | RFAM | Rfam/INFERNAL predictions |
| MIR | RFAM | miRBase annotation pipeline |
| EXP | OLIV | Expression (Microarray) |
| NSC | BREN | N-SCAN predictions with melanogaster alignments |
| SPR | MAKA | SPliceosomal RNA gene predictions using BLASTN, MFOLD, and manual inspection |
[edit]
Links
- Annotation Coordination
- Species Abbreviations
- Group Codes
- Method/Program Codes
- Annotation IDs
