R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7485600|pir||T04014 hypothetical protein F17A8.20 - Arabidopsis thaliana
>gi|4538897|emb|CAB39634.1| (AL049482) AX110P-like protein
[Arabidopsis thaliana] >gi|7267662|emb|CAB78090.1| (AL161515)
AX110P-like protein [Arabidopsis thaliana]
Length = 362
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 362
0 150 300
Plus Strand HSPs:
Score = 136 (47.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 25/43 (58%), Positives = 33/43 (76%), Frame = +1
Query: 76 ESSGVQFMDSTIWVHNPRTATMAHFLNDAQRFGILKSAFSIHS 204
E++GVQ MD T+WVHNPRTA + FL+D++RFG LK+ S S
Sbjct: 119 EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFS 161
>gi|5091625|gb|AAD39613.1|AC007454_12 (AC007454) Similar to gb|D14605 AX110P
embryogenesis-associated protein from Daucus carota and is a member
of the PF|01408 Oxidoreductase family. ESTs gb|Z35057, gb|T20683
and gb|Z48399 come from this gene. [Arabidopsis thaliana]
Length = 450
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 450
0 150 300
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 22/43 (51%), Positives = 30/43 (69%), Frame = +1
Query: 76 ESSGVQFMDSTIWVHNPRTATMAHFLNDAQRFGILKSAFSIHS 204
E +GVQFMD T W+H+PRT + F+ND + FG +KS +S S
Sbjct: 120 EVNGVQFMDGTQWMHSPRTDKIKEFVNDLESFGQIKSVYSCFS 162
>gi|7488933|pir||T14319 protein AX110P - carrot >gi|285739|dbj|BAA03455.1|
(D14605) AX110P [Daucus carota] >gi|740202|prf||2004427A
embryogenesis-associated protein [Daucus carota]
Length = 390
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 390
0 150 300
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.00041, P = 0.00041
Identities = 19/40 (47%), Positives = 29/40 (72%), Frame = +1
Query: 76 ESSGVQFMDSTIWVHNPRTATMAHFLNDAQRFGILKSAFS 195
+ +GVQ+MD T+ H+PR+A M +L+DA+ FG L+S S
Sbjct: 122 DDNGVQYMDGTMLQHHPRSAKMREYLDDAEHFGQLRSIIS 161
>gi|12322603|gb|AAG51297.1|AC026480_4 (AC026480) oxidoreductase, putative
[Arabidopsis thaliana]
Length = 364
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 364
0 150 300
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.070, P = 0.068
Identities = 16/40 (40%), Positives = 25/40 (62%), Frame = +1
Query: 76 ESSGVQFMDSTIWVHNPRTATMAHFLNDAQRFGILKSAFS 195
E +GVQFMD TIW+H+ RT + + D+ G ++ +S
Sbjct: 120 EYNGVQFMDGTIWLHHQRTVKIRDTMFDSGLLGDVRHMYS 159
>gi|2062334|gb|AAB53349.1| (U57401) unknown [Choristoneura fumiferana
nucleopolyhedrovirus]
Length = 70
Frame 2 hits (HSPs): ____________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 13/29 (44%), Positives = 17/29 (58%), Frame = +2
Query: 107 PSGSITQGLLPWPTSSTMRNVLVSSNRHS 193
P+ I +G PWP S T R+ V + RHS
Sbjct: 2 PARHIARGYTPWP-SRTTRDRQVRT-RHS 28
Score = 37 (13.0 bits), Expect = 0.29, Sum P(2) = 0.25
Identities = 5/13 (38%), Positives = 11/13 (84%), Frame = +1
Query: 238 QKWLQTLGSVSCH 276
++++QT+ V+CH
Sbjct: 57 RRFVQTMRGVACH 69
>gi|619390|gb|AAB32148.1| B cell antigen CD20-specific IgG light chain variable
region {C-terminal} [mice, hybridoma cell line Mem97, Peptide
Partial, 55 aa]
Length = 55
Frame -1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 55
0 20 40
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 3.3, P = 0.96
Identities = 14/33 (42%), Positives = 16/33 (48%), Frame = -1
Query: 102 IHELHPTGFGNYFAHLTFFWYTQQFFVPGRKAE 4
I+ L P FGNY+ FW T F G K E
Sbjct: 21 INRLQPEDFGNYYCQ--HFWSTPWTFGGGTKLE 51
>gi|7516956|pir||F72518 hypothetical protein APE2123 - Aeropyrum pernix (strain
K1) >gi|5105822|dbj|BAA81134.1| (AP000063) 128aa long hypothetical
protein [Aeropyrum pernix]
Length = 128
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 128
0 50 100
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 8.3, P = 1.0
Identities = 16/37 (43%), Positives = 24/37 (64%), Frame = +2
Query: 71 FPN-PVGCSS-WIAPSGSITQGLLPWPTSSTMRNVLVS 178
FP+ PVG S+ W P ++ GL+PW S T+ +L+S
Sbjct: 33 FPSSPVGTSTTWNPPMAALA-GLVPWAESGTIITLLLS 69
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.332 0.145 0.499
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.138 0.465
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.146 0.478
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.334 0.144 0.472
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.368 0.165 0.639
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.358 0.163 0.664
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 110 110 10. 69 3 12 22 0.12 32
29 0.12 34
+2 0 110 110 10. 69 3 12 22 0.12 32
29 0.12 34
+1 0 111 111 10. 70 3 12 22 0.12 32
29 0.12 34
-1 0 111 111 10. 70 3 12 22 0.12 32
29 0.12 34
-2 0 110 110 10. 69 3 12 22 0.12 32
29 0.12 34
-3 0 110 110 10. 69 3 12 22 0.12 32
29 0.12 34
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 7
No. of states in DFA: 588 (58 KB)
Total size of DFA: 167 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 121.55u 1.25s 122.80t Elapsed: 00:00:22
Total cpu time: 121.58u 1.26s 122.84t Elapsed: 00:00:22
Start: Thu Jan 17 10:31:48 2002 End: Thu Jan 17 10:32:10 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000