UniSTS

UniSTS:49142	Links
D5S486
Homo sapiens chromosome 5, polymorphic
Found by e-PCR in sequences from Canis familiaris, Gallus gallus, Homo sapiens, Mus musculus and Pan troglodytes.

Primer Information

Forward primer:	`GCCTGGGTGGCAGAAT`
Reverse primer:	`GAGTGCTTGAGCCCCA`
PCR product size:	163-191 (bp), Homo sapiens
GenBank Accession:	Z23569

Canis familiaris


Polymorphism info:


Electronic PCR results

Whole Genome Shotgun sequences (1)
AAEX02030285.1	106541 .. 107196 (656 bp)

Gallus gallus


Polymorphism info:


Electronic PCR results

Genomic (1)
CM000103.2	1537686 .. 1539022 (1337 bp)

Homo sapiens

Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
Name:	D5S486
Also known as:	206ZC1 AFM206zc1 GDB:189393 HS206ZC1
Polymorphism info:	on genetic map


Cross References

UniGene	Hs.689167	MRNA; cDNA DKFZp686D0262 (from clone DKFZp686D0262)
	Hs.689453	CDNA FLJ44689 fis, clone BRACE3012574


Mapping Information

View all results using the Map Viewer

AFM206zc1	Genethon Map:	Chr 5	Map Viewer
	Position:	31.00 (cM)

AFM206zc1	Marshfield Map:	Chr 5	Map Viewer
	Position:	31.78 (cM)

AFM206zc1	NCBI RH Map:	Chr 5	Map Viewer
	Position:	53.1 (cR)
	Lod score:	2.17

AFM206zc1	GeneMap99-GB4 Map:	Chr 5	Map Viewer
	Position:	67.57 (cR3000)
	Lod score:	F
	Reference Interval:	D5S478-D5S502

D5S486	Whitehead-YAC Map:	Chr 5	Map Viewer
	Reference Interval:	WC5.1


Electronic PCR results

mRNA (3)
BX647218.1	1056 .. 2179 (1124 bp)
BX647218.1	1056 .. 2313 (1258 bp)
AK128748.1	2801 .. 3253 (453 bp)

Genomic (40 of 201)[Show All Hits]
Z23569.1	27 .. 211 (185 bp)
AC003071.1	121236 .. 121799 (564 bp)
AC003982.1	74463 .. 74796 (334 bp)
AF047825.1	38137 .. 38737 (601 bp)
AC004678.1	36448 .. 37898 (1451 bp)
AL022322.1	59435 .. 59805 (371 bp)
AL024474.1	51579 .. 53078 (1500 bp)
AC005622.1	29777 .. 30744 (968 bp)
AC006076.1	8884 .. 10240 (1357 bp)
AL031679.1	76362 .. 77430 (1069 bp)
AC005971.5	17383 .. 18528 (1146 bp)
AC007136.1	1018 .. 2468 (1451 bp)
AL031447.4	16758 .. 18182 (1425 bp)
AL031281.6	123821 .. 124543 (723 bp)
AL096712.20	2765 .. 3883 (1119 bp)
AC008989.6	12716 .. 13014 (299 bp)
AL035460.15	24754 .. 25988 (1235 bp)
AL021807.2	87802 .. 88607 (806 bp)
AC009235.4	86162 .. 86676 (515 bp)
AL157838.24	44130 .. 45294 (1165 bp)
AL356354.10	10407 .. 12098 (1692 bp)
AL109843.25	87549 .. 88469 (921 bp)
AL360227.17	158829 .. 159188 (360 bp)
AL360227.17	158829 .. 159326 (498 bp)
AC009311.3	159514 .. 160460 (947 bp)
AF312915.1	77866 .. 79031 (1166 bp)
AP003113.1	51072 .. 52099 (1028 bp)
AL139321.28	54591 .. 55149 (559 bp)
AC004967.3	79480 .. 80498 (1019 bp)
AL139415.10	136537 .. 137849 (1313 bp)
AL449215.3	29340 .. 30960 (1621 bp)
AL391139.19	111433 .. 112163 (731 bp)
AC011236.8	32634 .. 33777 (1144 bp)
AL358333.4	173856 .. 175212 (1357 bp)
AL359399.3	108141 .. 109461 (1321 bp)
AL512641.9	34639 .. 35951 (1313 bp)
AL356460.3	47141 .. 48285 (1145 bp)
AP000936.7	75645 .. 77333 (1689 bp)
AP002498.3	116321 .. 117510 (1190 bp)
AC078991.21	30864 .. 31735 (872 bp)

Working Draft phase 1 (from GenBank HTGS division) (40)
AC004060.1	53569 .. 53750 (182 bp)
AC022621.4	48692 .. 50225 (1534 bp)
AC023970.2	44953 .. 45920 (968 bp)
AC023645.3	90217 .. 91409 (1193 bp)
AC027054.3	75180 .. 76372 (1193 bp)
AC027105.3	106120 .. 107094 (975 bp)
AC053531.3	121110 .. 122049 (940 bp)
AC016997.6	14459 .. 16015 (1557 bp)
AC021859.4	146240 .. 147537 (1298 bp)
AL354652.10	88334 .. 89693 (1360 bp)
AC016901.4	148068 .. 148973 (906 bp)
AC073835.2	92631 .. 94233 (1603 bp)
AL121960.4	134659 .. 135464 (806 bp)
AC010550.7	18716 .. 19935 (1220 bp)
AC066599.3	46970 .. 47939 (970 bp)
AC025788.4	150103 .. 151042 (940 bp)
AC079251.3	68950 .. 69759 (810 bp)
AC069056.3	39270 .. 39989 (720 bp)
AC083931.4	138908 .. 140464 (1557 bp)
AF238377.3	170385 .. 171886 (1502 bp)
AC091942.1	54988 .. 55762 (775 bp)
AC093739.1	150820 .. 151766 (947 bp)
AL591134.2	79262 .. 80095 (834 bp)
AC025590.41	96422 .. 97459 (1038 bp)
AC099650.3	238541 .. 238837 (297 bp)
AC108123.1	165501 .. 166926 (1426 bp)
AC108040.2	141539 .. 141873 (335 bp)
AC138421.1	30890 .. 32460 (1571 bp)
AC138849.1	47964 .. 48738 (775 bp)
AC138852.1	21183 .. 21957 (775 bp)
AC000382.2	26151 .. 27438 (1288 bp)
AC139489.1	436102 .. 436876 (775 bp)
AC140719.1	46418 .. 47987 (1570 bp)
AC139802.2	32334 .. 33108 (775 bp)
AC141298.1	40333 .. 41723 (1391 bp)
AC141301.1	69571 .. 70960 (1390 bp)
AC141316.1	157476 .. 158865 (1390 bp)
AC142539.1	12078 .. 13468 (1391 bp)
AC142540.1	30969 .. 32360 (1392 bp)
AC145318.1	174335 .. 175724 (1390 bp)

Working Draft phase 2 (from GenBank HTGS division) (4)
AP002080.2	16502 .. 17114 (613 bp)
AC103888.1	38615 .. 38754 (140 bp)
AC084258.2	25487 .. 27158 (1672 bp)
AC021469.12	108867 .. 109536 (670 bp)

Low-pass Sequence Sampling (from GenBank HTGS division) (2)
AC091080.1	29582 .. 30417 (836 bp)
AC104983.1	26401 .. 26735 (335 bp)

BAC-ends (1)
CR959030.1	42 .. 103 (62 bp)

Whole Genome Shotgun sequences (40 of 201)[Show All Hits]
AADD01197817.1	620 .. 2122 (1503 bp)
AADD01185023.1	4710 .. 5439 (730 bp)
AADD01174048.1	18469 .. 19016 (548 bp)
AADD01170297.1	14785 .. 16141 (1357 bp)
AADD01170263.1	1502 .. 2668 (1167 bp)
AADD01167400.1	4299 .. 5534 (1236 bp)
AADD01166168.1	6631 .. 7544 (914 bp)
AADD01166031.1	145 .. 897 (753 bp)
AADD01165735.1	9169 .. 10136 (968 bp)
AADD01164809.1	4227 .. 5320 (1094 bp)
AADD01163697.1	12069 .. 12675 (607 bp)
AADD01161980.1	1754 .. 3204 (1451 bp)
AADD01153508.1	7641 .. 8416 (776 bp)
AADD01150712.1	27174 .. 28744 (1571 bp)
AADD01149971.1	17713 .. 18517 (805 bp)
AADD01148875.1	14943 .. 16334 (1392 bp)
AADD01148396.1	3996 .. 5123 (1128 bp)
AADD01147625.1	20836 .. 21426 (591 bp)
AADD01141347.1	4002 .. 5318 (1317 bp)
AADD01139586.1	14161 .. 14653 (493 bp)
AADD01138850.1	709 .. 1831 (1123 bp)
AADD01131530.1	2952 .. 3510 (559 bp)
AADD01128643.1	3042 .. 3375 (334 bp)
AADD01127972.1	800 .. 1424 (625 bp)
AADD01126986.1	3622 .. 4879 (1258 bp)
AADD01119737.1	950 .. 2638 (1689 bp)
AADD01117307.1	5568 .. 6757 (1190 bp)
AADD01110690.1	10085 .. 11380 (1296 bp)
AADD01105462.1	5804 .. 7117 (1314 bp)
AADD01094104.1	18407 .. 19434 (1028 bp)
AADD01092105.1	1643 .. 3111 (1469 bp)
AADD01092078.1	10483 .. 11833 (1351 bp)
AADD01083405.1	13452 .. 14519 (1068 bp)
AADD01082230.1	865 .. 2125 (1261 bp)
AADD01075833.1	20335 .. 21834 (1500 bp)
AADD01074025.1	3163 .. 3442 (280 bp)
AADD01068929.1	13410 .. 14528 (1119 bp)
AADD01068125.1	11910 .. 12715 (806 bp)
AADD01067412.1	33879 .. 35184 (1306 bp)
AADD01067074.1	4973 .. 6081 (1109 bp)

Macaca mulatta

Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.

Polymorphism info:

Mus musculus


Polymorphism info:


Electronic PCR results

Genomic (1)
DS033641.1	8107 .. 8859 (753 bp)

Whole Genome Shotgun sequences (1)
AAHY01198087.1	8107 .. 8859 (753 bp)

Pan troglodytes


Polymorphism info:


Electronic PCR results

Genomic (40 of 94)[Show All Hits]
AC093709.2	127842 .. 129531 (1690 bp)
AC093709.2	160486 .. 161546 (1061 bp)
AC093709.2	160486 .. 162046 (1561 bp)
AC087568.3	103389 .. 104648 (1260 bp)
AC145891.4	173393 .. 175037 (1645 bp)
AC149230.2	46345 .. 47360 (1016 bp)
AC147213.3	190921 .. 191660 (740 bp)
AC147213.3	190921 .. 191796 (876 bp)
AC182429.3	27658 .. 28205 (548 bp)
CM000336.1	5039247 .. 5040533 (1287 bp)
CM000336.1	55056266 .. 55056995 (730 bp)
CM000336.1	64835483 .. 64836852 (1370 bp)
CM000336.1	132632857 .. 132634352 (1496 bp)
CM000335.1	28982593 .. 28983135 (543 bp)
CM000333.1	16922749 .. 16923355 (607 bp)
CM000333.1	38627160 .. 38628248 (1089 bp)
CM000333.1	49280427 .. 49281391 (965 bp)
CM000333.1	52474057 .. 52474792 (736 bp)
CM000333.1	53591273 .. 53592169 (897 bp)
CM000331.1	11482046 .. 11482791 (746 bp)
CM000331.1	19513237 .. 19513904 (668 bp)
CM000331.1	20340521 .. 20341279 (759 bp)
CM000331.1	64763661 .. 64764918 (1258 bp)
CM000330.1	19215867 .. 19216458 (592 bp)
CM000330.1	47906833 .. 47907958 (1126 bp)
CM000330.1	56446100 .. 56447323 (1224 bp)
CM000330.1	73279998 .. 73280795 (798 bp)
CM000330.1	85830700 .. 85832298 (1599 bp)
CM000329.1	18500326 .. 18501717 (1392 bp)
CM000329.1	69367210 .. 69367620 (411 bp)
CM000328.1	63212006 .. 63213466 (1461 bp)
CM000328.1	74220290 .. 74220783 (494 bp)
CM000328.1	102213083 .. 102214117 (1035 bp)
CM000328.1	104584132 .. 104585450 (1319 bp)
CM000327.1	49438980 .. 49439545 (566 bp)
CM000326.1	951631 .. 952898 (1268 bp)
CM000326.1	96357037 .. 96358301 (1265 bp)
CM000326.1	114508268 .. 114508716 (449 bp)
CM000326.1	125208339 .. 125208758 (420 bp)
CM000325.1	3450755 .. 3451943 (1189 bp)

Working Draft phase 1 (from GenBank HTGS division) (7)
AC146180.1	113182 .. 114178 (997 bp)
AC147313.1	143924 .. 144978 (1055 bp)
AC146419.2	101686 .. 102944 (1259 bp)
AC191709.1	2301 .. 3297 (997 bp)
AC193205.3	118143 .. 119039 (897 bp)
AC193884.3	88047 .. 88194 (148 bp)
AC225607.1	83581 .. 84326 (746 bp)

Whole Genome Shotgun sequences (40 of 104)[Show All Hits]
AADA01352505.1	662 .. 847 (186 bp)
AADA01326962.1	15072 .. 15637 (566 bp)
AADA01319468.1	7225 .. 8250 (1026 bp)
AADA01317486.1	17442 .. 18546 (1105 bp)
AADA01311075.1	2640 .. 3378 (739 bp)
AADA01311075.1	2640 .. 3514 (875 bp)
AADA01307456.1	31577 .. 32375 (799 bp)
AADA01303772.1	604 .. 1419 (816 bp)
AADA01293876.1	11152 .. 11698 (547 bp)
AADA01293737.1	39583 .. 40126 (544 bp)
AADA01263896.1	482 .. 1931 (1450 bp)
AADA01263245.1	726 .. 1317 (592 bp)
AADA01262804.1	10060 .. 10490 (431 bp)
AADA01261004.1	8812 .. 10171 (1360 bp)
AADA01250168.1	7743 .. 8521 (779 bp)
AADA01242527.1	5608 .. 7175 (1568 bp)
AADA01228928.1	21596 .. 22006 (411 bp)
AADA01226775.1	2415 .. 3357 (943 bp)
AADA01224268.1	18978 .. 20658 (1681 bp)
AADA01216243.1	10572 .. 11871 (1300 bp)
AADA01200319.1	1560 .. 2085 (526 bp)
AADA01194030.1	13819 .. 15122 (1304 bp)
AADA01194030.1	13819 .. 15505 (1687 bp)
AADA01183828.1	3435 .. 3920 (486 bp)
AADA01178061.1	2603 .. 4219 (1617 bp)
AADA01173551.1	3069 .. 4339 (1271 bp)
AADA01169002.1	4091 .. 4866 (776 bp)
AADA01164927.1	3836 .. 5109 (1274 bp)
AADA01158863.1	20819 .. 22298 (1480 bp)
AADA01142004.1	7232 .. 7745 (514 bp)
AADA01127710.1	318 .. 1053 (736 bp)
AADA01120731.1	348 .. 1077 (730 bp)
AADA01113564.1	1155 .. 1840 (686 bp)
AADA01112158.1	3636 .. 4433 (798 bp)
AADA01107643.1	2751 .. 3605 (855 bp)
AADA01104651.1	14434 .. 15856 (1423 bp)
AADA01086392.1	39 .. 1531 (1493 bp)
AADA01081441.1	4628 .. 5592 (965 bp)
AADA01079512.1	11104 .. 12531 (1428 bp)
AADA01078930.1	3012 .. 4009 (998 bp)

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