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UniSTS:74770 Links
D5S2006
Homo sapiens chromosome 5, loci BTNL8 and LOC653117, polymorphic
Pan troglodytes chromosome 5, locus BTNL8

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:TGTATTCTTAAATTCTGTGAAGAGG
Reverse primer:ATCCATCATCTCCCGTAG
PCR product size:125-155 (bp), Homo sapiens
GenBank Accession:Z53048

   Homo sapiens
Name: D5S2006
Also known as: AFMb005wf9 GDB:602583 GDB:609171 HSB005WF9 SHGC-21874
Polymorphism info: on genetic map

Cross References Help
Gene GeneID:653117
 Symbol:LOC653117
 Description:similar to B7h.4
 Position: 
Gene GeneID:79908
 Symbol:BTNL8
 Description:butyrophilin-like 8
 Position:5q35.3

Mapping InformationHelp
D5S2006 Sequence Map: Chr 5|HuRef Map Viewer
  Position: 175073704-175073856 (bp)
 
D5S2006 Sequence Map: Chr 5|Celera Map Viewer
  Position: 175972325-175972477 (bp)
 
D5S2006 Sequence Map: Chr 5 Map Viewer
  Position: 180281217-180281369 (bp)
 
D5S2006 Sequence Map: Chr 5|NT_113890.1 Map Viewer
  Position: 86641-86795 (bp)
 
D5S2006 deCODE Map: Chr 5 Map Viewer
  Position: 205.69 (cM)
 
AFMb005wf9 Genethon Map: Chr 5 Map Viewer
  Position: 197.60 (cM)
 
AFMb005wf9 Marshfield Map: Chr 5 Map Viewer
  Position: 197.54 (cM)
 
SHGC-21874 TNG Map: Chr 5 Map Viewer
  Position: 84915 (cR50000)
  Lod score: 6
  Reference Interval: 227

Electronic PCR results Help
Genomic (10)
Z53048.1 18 .. 162 (145 bp)  
AC016572.6 86641 .. 86795 (155 bp)  
AC091874.4 137238 .. 137390 (153 bp)  
CH003452.1 177433788 .. 177433940 (153 bp)  
CH003500.1 187739997 .. 187740149 (153 bp)  
AB135316.1 242 .. 394 (153 bp)  
CH471165.2 2869673 .. 2869825 (153 bp)  
CM000256.1 175972325 .. 175972477 (153 bp)  
DS486201.1 2878036 .. 2878188 (153 bp)  
CM000466.1 175073704 .. 175073856 (153 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01066429.1 8181 .. 8333 (153 bp)  
AADC01057767.1 13322 .. 13474 (153 bp)  
AADB02009890.1 98035 .. 98187 (153 bp)  
ABBA01010087.1 35405 .. 35557 (153 bp)  
 

   Pan troglodytes
Name: D5S2006
Polymorphism info:  

Cross References Help
Gene GeneID:741207
 Symbol:BTNL8
 Description:butyrophilin-like 8
 Position: 

Mapping InformationHelp
D5S2006 Sequence Map: Chr 5 Map Viewer
  Position: 183422222-183422358 (bp)
 
D5S2006 Sequence Map: Chr 5 Map Viewer
  Position: 183424082-183424228 (bp)

Electronic PCR results Help
Genomic (2)
CM000319.1 183422222 .. 183422358 (137 bp)  
CM000319.1 183424082 .. 183424228 (147 bp)  
 
Whole Genome Shotgun sequences (3)
AADA01275441.1 15089 .. 15235 (147 bp)  
AACZ02067142.1 944 .. 1090 (147 bp)  
AACZ02067141.1 1357 .. 1493 (137 bp)  
 

 

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