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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7235076          
refSNP ID: rs7235076
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_024430.2:c.33+7705A>G
NT_010966.13:g.25133519T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10897805 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7235076 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10897805BCM_SSAHASNP|chr18.NT_010966.13_25133519fwd/BC/Tgctgggactacaggcacccaccacaacaccggctaatttttttttttttttttttttaag06/30/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7235076|allelePos=624|totalLen=972|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=116
 AAAAAAAGAC AATAGCTATG ACTGACAGAG TGAAACTAGC ATCCGCACAT ACTATTGGGA
 ACACTGAGAA TAGGCCCACT CTTTAGGAAA TCATCCTGGT TCTACATATC AAAAGTTTTT
 CAATGTCCTT CTGTTAGTTA ATGGTTTTtt cagtcattca gtaggtatta ctgagaatct
 gtcatgtgcc aggcattgaa ccaggcacCA CTGGAGTAAG CAGACaggag tgtgggtcct
 caccccaagg gcagccatgc cagccctgga atgaccaatc aggggcttgt agatgagaga
 gaaataaacc tcttccttgt ctaggccact gttgttttgg ggttttctat tacttgcagc
 caaactgaat cctatttata caGAAGGTAA GTGAGCTTTC ACCAGCTGCT CTGGtttctt
 ttttcttttc tttttttctt ctttctttTT Ctttcttttt tttttttttt tttttttttt
 tgagacagag tctcattctg ttgcccaggc tggagtgcag cggagtgacc ttggctcact
 gcaaccgccc cctcccaagt ccaggcgatt ctcctgccac agcctcccga gtagctggga
 ctacaggcac ccaccacaac acc
 Y
 ggctaatttt tttttttttt tttttttaag taaagacggg gtttcaccat gttgaccagc
 ctggtctcca actcctgacc tcaggtgatt cacccgcctg ggcctcccaa agtgctggga
 ttacaggcat gagccaccac gcccagccCT GCTGTCTGGT TTCTTAATGG AGTAGAGGCA
 AGATCACCAA AACACAGTGA GAATGTGGGA GGGATGTGTA GGTTTGAGTG GAAAAGGCAT
 GAAATTATCA CTGCAGAAAG GGCAAGAGTG ACTTATTAGA GAAACATAGT AAAATGGCTG
 GGCAATGATG AGTTCTGTCT TGAGTTTCCA GAAATAGATA CTTAAAGA

  GeneView back to top
GeneView via analysis of contig annotation: PSTPIP2 proline-serine-threonine phosphatase interacting protein 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010966->NM_024430
svfunction
HuRefNW_001838467->NM_024430
svfunction
CeleraNW_927095->NM_024430
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010966->NM_024430->NP_07774825133519reverseintron
HuRefNW_001838467->NM_024430->NP_077748898793forwardintron
CeleraNW_927095->NM_024430->NP_07774825121011reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7235076 maps exactly once on NCBI human chromosome 18
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
18NW_927095.12512101140452606plusTalt_assembly_1CeleraCeleraview623
18NW_001838467.289879340502009minusAalt_assembly_8HuRefHuRefview623
18NT_010966.132513351941898415plusTref_assemblyreferencereferenceview623

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010966
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC012569.18 NC_000018.8 AC087744.2

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .