Vibrio vulnificus CMCP6 chromosome I

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189733-189832 (1-100) 189833-189932 (101-200) 189933-190032 (201-300) 190033-190132 (301-400) 190133-190232 (401-500)
190233-190332 (501-600) 190333-190432 (601-700) 190433-190532 (701-800) 190533-190632 (801-900) 190633-190732 (901-1000)
[190733-190832 (1001-1100)] 190833-190932 (1101-1200) 190933-191032 (1201-1300) 191033-191132 (1301-1400) 191133-191232 (1401-1500)
191233-191332 (1501-1600) 191333-191432 (1601-1700) 191433-191532 (1701-1800) 191533-191632 (1801-1900) 191633-191732 (1901-2000)
191733-191832 (2001-2100) 191833-191932 (2101-2200) 191933-192032 (2201-2300) 192033-192132 (2301-2400) 192133-192232 (2401-2500)
192233-192332 (2501-2600) 192333-192432 (2601-2700) 192433-192532 (2701-2800) 192533-192632 (2801-2900) 192633-192658 (2901-2926)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190733 hypothetical VV11096 Chromosome segregation ATPase
ATPase involved in DNA repair; COG0419; COG1196
genbank 27364519 NP_760047.1 265 1095768 1096565
190734 hypothetical VV11097 Response regulator
CheY-like receiver; COG 0784; contains a CheY-like receiver domain and an HTH DNA-binding domain; COG2197
genbank 27364520 NP_760048.1 298 1096666 1097562
190735 hypothetical VV11098 Gluconate utilization system gnt-I transcriptional repressor
COG1609
genbank 27364521 NP_760049.1 335 1097638 1098645
190736 hypothetical VV11099 phosphogluconate dehydratase
catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
genbank 27364522 NP_760050.1 598 1098696 1100492
190737 hypothetical VV11100 Thermoresistant gluconokinase
COG3265
genbank 27364523 NP_760051.1 173 1100489 1101010
190738 hypothetical VV11101 H+/gluconate symporter
similar to permeases; COG2610
genbank 27364524 NP_760052.1 458 1101163 1102539
190739 hypothetical VV11102 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
genbank 27364525 NP_760053.1 203 1102549 1103160
190740 hypothetical VV11103 Membrane protein
similar to to metalloendopeptidases; COG0739
genbank 27364526 NP_760054.1 265 1103429 1104226
190741 hypothetical VV11104 hypothetical protein genbank 27364527 NP_760055.1 146 1104316 1104756
190742 hypothetical VV11105 glutathione reductase
Involved in redox regulation and oxidative defense
genbank 27364528 NP_760056.1 451 1104924 1106279
190743 hypothetical VV11106 Protein involved in catabolism of external DNA
COG2961
genbank 27364529 NP_760057.1 279 1106417 1107256
190744 hypothetical VV11108 Zn-dependent oligopeptidase
COG0339
genbank 27364530 NP_760058.1 680 1107530 1109572
190745 hypothetical VV11109 Transcriptional regulator AsnC
COG1522
genbank 27364531 NP_760059.1 154 1109653 1110117
190746 hypothetical VV11110 FOG: EAL domain
GGDEF domain; COG2199; COG2200
genbank 27364532 NP_760060.1 1039 1110253 1113372
190747 hypothetical VV11112 SAM-dependent methyltransferase
COG0500
genbank 27364533 NP_760061.1 259 1113482 1114261
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190748 hypothetical VV11113 hypothetical protein genbank 27364534 NP_760062.1 165 1114421 1114918
190749 hypothetical VV11114 Permease of the drug/metabolite transporter (DMT) superfamily
COG0697
genbank 27364535 NP_760063.1 296 1115010 1115900
190750 hypothetical VV11115 Universal stress protein UspA
similar to nucleotide-binding proteins; COG0589
genbank 27364536 NP_760064.1 141 1115966 1116391
190751 hypothetical VV11116 Ferritin-like protein
COG1528
genbank 27364537 NP_760065.1 175 1116559 1117086
190752 hypothetical VV11117 universal stress protein UspB
ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
genbank 27364538 NP_760066.1 107 1117173 1117496
190753 hypothetical VV11118 Predicted flavoproteins
COG2081
genbank 27364539 NP_760067.1 395 1117599 1118786
190754 hypothetical VV11119 Uncharacterized enzyme of heme biosynthesis
COG3071
genbank 27364540 NP_760068.1 393 1118868 1120049
190755 hypothetical VV11120 Uncharacterized enzyme of heme biosynthesis
COG2959
genbank 27364541 NP_760069.1 403 1120046 1121257
190756 hypothetical VV11121 uroporphyrinogen-III synthetase
catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane
genbank 27364542 NP_760070.1 243 1121272 1122003
190757 hypothetical VV11122 porphobilinogen deaminase
transformation of 4 prophobilinogen to hydroxymethylbilane in prophyrin biosynthesis
genbank 27364543 NP_760071.1 312 1122005 1122943
190758 cyaA hypothetical VV11123 adenylate cyclase
catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
genbank 27364544 NP_760072.1 844 1123307 1125841
190759 cyaY hypothetical VV11124 frataxin-like protein
defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
genbank 27364545 NP_760073.1 104 1125958 1126272
190760 hypothetical VV11126 Diaminopimelate decarboxylase
COG0019
genbank 27364546 NP_760074.1 417 1126513 1127766
190761 dapF hypothetical VV11127 diaminopimelate epimerase
involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
genbank 27364547 NP_760075.1 269 1127798 1128607
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190762 hypothetical VV11128 hypothetical protein
COG3159
genbank 27364548 NP_760076.1 233 1128650 1129351
190763 hypothetical VV11129 tyrosine recombinase
includes large family of site-specific recombinases; XerC; XerD; affects chromosome segregation during cell division and dimer resolution of plasmids
genbank 27364549 NP_760077.1 316 1129320 1130270
190764 hypothetical VV11130 Predicted hydrolase
HAD superfamily; COG1011
genbank 27364550 NP_760078.1 238 1130267 1130983
190765 hypothetical VV11132 FOG: EAL domain
GGDEF domain; COG2199; COG2200
genbank 27364551 NP_760079.1 829 1131113 1133602
190766 hypothetical VV11133 hypothetical protein
COG3148
genbank 27364552 NP_760080.1 201 1133652 1134257
190767 hypothetical VV11134 Predicted membrane protein
COG3650
genbank 27364553 NP_760081.1 516 1134254 1135804
190768 hypothetical VV11135 hypothetical protein
COG2947
genbank 27364554 NP_760082.1 120 1135954 1136316
190769 hypothetical VV11136 Predicted hydrolase of the HAD superfamily
COG0561
genbank 27364555 NP_760083.1 276 1136414 1137244
190770 hypothetical VV11137 Lysophospholipase
COG2267
genbank 27364556 NP_760084.1 332 1137425 1138423
190771 hypothetical VV11138 Putative threonine efflux protein
COG1280
genbank 27364557 NP_760085.1 207 1138481 1139104
190772 hypothetical VV11139 Predicted signal transduction protein
contains EAL and modified HD-GYP domains; COG3434
genbank 27364558 NP_760086.1 407 1139158 1140381
190773 hypothetical VV11140 Predicted transcriptional regulator
COG0640
genbank 27364559 NP_760087.1 111 1140488 1140823
190774 hypothetical VV11141 glyceraldehyde-3-phosphate dehydrogenase
catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
genbank 27364560 NP_760088.1 333 1140853 1141854
190775 hypothetical VV11142 Predicted protein-tyrosine phosphatase
COG2453
genbank 27364561 NP_760089.1 169 1141854 1142363
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190776 hypothetical VV11143 Permease of the major facilitator superfamily
COG0477
genbank 27364562 NP_760090.1 406 1142428 1143648
190777 hypothetical VV11144 hypothetical protein
COG3274
genbank 27364563 NP_760091.1 337 1143748 1144761
190778 hypothetical VV11145 hypothetical protein genbank 27364564 NP_760092.1 109 1144758 1145087
190779 hypothetical VV11146 hypothetical protein genbank 27364565 NP_760093.1 133 1145290 1145691
190780 hypothetical VV11147 Predicted membrane protein
COG3714
genbank 27364566 NP_760094.1 195 1146756 1147343
190781 hypothetical VV11150 hypothetical protein genbank 27364567 NP_760095.1 61 1147690 1147875
190782 hypothetical VV11151 Multiple antibiotic transporter
COG2095
genbank 27364568 NP_760096.1 184 1147874 1148428
190783 hypothetical VV11152 Predicted membrane protein
COG3776
genbank 27364569 NP_760097.1 88 1148494 1148760
190784 hypothetical VV11153 N6-adenine-specific methylase
COG0742
genbank 27364570 NP_760098.1 165 1148779 1149276
190785 hypothetical VV11154 Signal recognition particle GTPase
other COG candidate exists; COG0552
genbank 27364571 NP_760099.1 423 1149495 1150766
190786 hypothetical VV11155 Predicted ATPase involved in cell division
COG2884
genbank 27364572 NP_760100.1 162 1150787 1151275
190787 hypothetical VV11156 Predicted ATPase involved in cell division
COG2884
genbank 27364573 NP_760101.1 68 1151259 1151465
190788 hypothetical VV11157 Cell division protein
COG2177
genbank 27364574 NP_760102.1 322 1151452 1152420
190789 hypothetical VV11158 RNA polymerase sigma factor
Binds with the catalytic core of RNA polymerase to produce the holoenzyme
genbank 27364575 NP_760103.1 285 1152597 1153454
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190790 hypothetical VV11160 thiosulfate sulfurtransferase
catalyzes the formation of thiocyanate from thiosylfate and cyanide
genbank 27364576 NP_760104.1 106 1153891 1154211
190791 hypothetical VV11161 Uncharacterized membrane protein
similar to Drosophila rhomboid; COG0705
genbank 27364577 NP_760105.1 280 1154296 1155138
190792 hypothetical VV11162 flagellar basal body-associated protein
COG1580
genbank 27364578 NP_760106.1 136 1155187 1155597
190793 hypothetical VV11163 4-hydroxybenzoate synthetase
chorismate lyase; COG3161
genbank 27364579 NP_760107.1 179 1155770 1156309
190794 hypothetical VV11164 4-hydroxybenzoate octaprenyltransferase
catalyzes the formation of 3-octaprenyl-4-hydroxybenzoate from 4-hydroxybenzoate and trans octaprenyl diphosphat
genbank 27364580 NP_760108.1 284 1156310 1157164
190795 hypothetical VV11165 glycerol-3-phosphate acyltransferase
catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
genbank 27364581 NP_760109.1 809 1157254 1159683
190796 hypothetical VV11166 LexA repressor
Represses a number of genes involved in the response to DNA damage
genbank 27364582 NP_760110.1 207 1160001 1160624
190797 hypothetical VV11167 O-Methyltransferase involved in polyketide biosynthesis
COG3315
genbank 27364583 NP_760111.1 270 1160812 1161624
190798 hypothetical VV11168 soluble pyridine nucleotide transhydrogenase
catalyzes the conversionof NADPH to NADH
genbank 27364584 NP_760112.1 466 1161678 1163078
190799 hypothetical VV11169 Transcriptional regulator
TetR family; COG1309
genbank 27364585 NP_760113.1 278 1163168 1164004
190800 hypothetical VV11170 ATPase of the AAA+ class
COG0464
genbank 27364586 NP_760114.1 126 1164004 1164384
190801 hypothetical VV11171 tRNA (uracil-5-)-methyltransferase
Catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
genbank 27364587 NP_760115.1 369 1164442 1165551
190802 hypothetical VV11172 hypothetical protein genbank 27364588 NP_760116.1 75 1165692 1165919
190803 hypothetical VV11173 Outer membrane cobalamin receptor protein
COG4206
genbank 27364589 NP_760117.1 606 1165954 1167774
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190804 hypothetical VV11174 Predicted ATPase of PP-loop superfamily
COG2102
genbank 27364590 NP_760118.1 205 1167889 1168506
190805 hypothetical VV11175 glutamate racemase
converts L-glutamate to D-glutamate a component of peptidoglycan
genbank 27364591 NP_760119.1 263 1168540 1169331
190806 hypothetical VV11176 RNA-binding proteins
RRM domain; COG0724
genbank 27364592 NP_760120.1 148 1169309 1169755
190807 hypothetical VV11193 Transposase and inactivated derivatives
COG3335
genbank 27364599 NP_760127.1 177 1175895 1176428
190808 hypothetical VV11194 hypothetical protein genbank 27364600 NP_760128.1 64 1176454 1176648
190809 pssA hypothetical VV11195 phosphatidylserine synthase
catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
genbank 27364601 NP_760129.1 446 1176862 1178202
190810 hypothetical VV11196 Predicted acyltransferase
conserved hypothetical protein; COG2153
genbank 27364602 NP_760130.1 145 1178292 1178729
190811 murB hypothetical VV11197 UDP-N-acetylenolpyruvoylglucosamine reductase
catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
genbank 27364603 NP_760131.1 347 1178793 1179836
190812 hypothetical VV11198 Biotin-(acetyl-CoA carboxylase) ligase
other COG candidate exists; COG0340
genbank 27364604 NP_760132.1 202 1179833 1180441
190813 hypothetical VV11199 Biotin-(acetyl-CoA carboxylase) ligase
COG0340
genbank 27364605 NP_760133.1 118 1180447 1180803
190814 hypothetical VV11200 pantothenate kinase
catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
genbank 27364606 NP_760134.1 307 1180835 1181758
190815 hypothetical VV11201 hypothetical protein genbank 27364607 NP_760135.1 70 1182008 1182220
190816 hypothetical VV11203 GTPase - translation elongation factor
COG0050
genbank 27364608 NP_760136.1 86 1182479 1182739
190817 hypothetical VV11204 GTPase - translation elongation factor
COG0050
genbank 27364609 NP_760137.1 303 1182753 1183664
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190818 hypothetical VV11205 translocase
COG0690
genbank 27364610 NP_760138.1 126 1183897 1184277
190819 nusG hypothetical VV11206 transcription antitermination protein NusG
Modulates Rho-dependent transcription termination
genbank 27364611 NP_760139.1 182 1184291 1184839
190820 rplK hypothetical VV11207 50S ribosomal protein L11
binds directly to 23S ribosomal RNA
genbank 27364612 NP_760140.1 142 1184982 1185410
190821 hypothetical VV11208 50S ribosomal protein L1
Binds directly to 23S rRNA and is located proximal to the site where elongation factor Tu is bound to the ribosome
genbank 27364613 NP_760141.1 233 1185415 1186116
190822 rplJ hypothetical VV11209 50S ribosomal protein L10
binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
genbank 27364614 NP_760142.1 162 1186407 1186895
190823 hypothetical VV11210 50S ribosomal protein L7/L12
present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulat
genbank 27364615 NP_760143.1 122 1186956 1187324
190824 hypothetical VV11211 DNA-directed RNA polymerase beta subunit
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
genbank 27364616 NP_760144.1 1342 1187575 1191603
190825 hypothetical VV11212 DNA-directed RNA polymerase beta' subunit
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
genbank 27364617 NP_760145.1 1400 1191679 1195881
190826 hypothetical VV11213 Regulator of sigma D
COG3160
genbank 27364618 NP_760146.1 164 1196023 1196517
190827 nudC hypothetical VV11214 NADH pyrophosphatase
can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates
genbank 27364619 NP_760147.1 261 1196712 1197497
190828 hypothetical VV11215 hypothetical protein genbank 27364620 NP_760148.1 161 1197603 1198088
190829 hypothetical VV11216 hypothetical protein genbank 27364621 NP_760149.1 246 1198093 1198833
190830 hypothetical VV11218 uroporphyrinogen decarboxylase
Catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
genbank 27364622 NP_760150.1 355 1199148 1200215
190831 hypothetical VV11220 Uracil-DNA glycosylase
COG1573
genbank 27364623 NP_760151.1 197 1200331 1200924
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
190832 hypothetical VV11221 Phosphoglycerate dehydrogenase
similar to dehydrogenases; COG0111
genbank 27364624 NP_760152.1 308 1200928 1201854


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