BLASTP 2.0.8 [Jan-05-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= YNL107W YNL107W, Chr XIV from 420095-420775
         (226 letters)

Database: nr
           361,503 sequences; 110,384,460 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|1730761|sp|P53930|YNK7_YEAST HYPOTHETICAL 26.0 KD PROTEIN IN...   468  e-131
gi|1723479|sp|Q10319|YD67_SCHPO HYPOTHETICAL 24.9 KD PROTEIN C1...   199  2e-50
gi|4210496 (U61384) GAS41 protein [Homo sapiens]                     137  6e-32
gi|3878581|emb|CAB01234| (Z77667) predicted using Genefinder; S...   133  1e-30
gi|1168365|sp|P42568|AF9_HUMAN AF-9 PROTEIN >gi|2134712|pir||I3...    83  1e-15
gi|2135571|pir||I58377 LTG19 - human >gi|436042|gnl|PID|d100391...    78  5e-14
gi|462010|sp|Q03111|ENL_HUMAN ENL PROTEIN >gi|345835|pir||B4426...    78  5e-14
gi|4049527|emb|CAA22554| (AL034565) putative transcription init...    66  2e-10
gi|461510|sp|P35189|T2FC_YEAST TRANSCRIPTION INITIATION FACTOR ...    55  4e-07
gi|1256510|emb|CAA49192| (X69394) ORF2 [Saccharomyces cerevisiae]     55  4e-07
gi|2132084|pir||S60940 hypothetical protein YOR213c - yeast (Sa...    48  5e-05
gi|2326818|emb|CAA99431| (Z75122) ORF YOR213c [Saccharomyces ce...    48  5e-05

>gi|1730761|sp|P53930|YNK7_YEAST HYPOTHETICAL 26.0 KD PROTEIN IN
           CYB5-LEU4 INTERGENIC REGION >gi|2131888|pir||S63048
           hypothetical protein YNL107w - yeast (Saccharomyces
           cerevisiae) >gi|1183966|emb|CAA93400| (Z69382) Similar
           to human AF-9 [Saccharomyces cerevisiae]
           >gi|1302025|emb|CAA95984| (Z71383) ORF YNL107w
           [Saccharomyces cerevisiae]
           Length = 226
           
 Score =  468 bits (1192), Expect = e-131
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MAPTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIK 60
           MAPTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIK
Sbjct: 1   MAPTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIK 60

Query: 61  KVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPY 120
           KVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPY
Sbjct: 61  KVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPY 120

Query: 121 ANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTD 180
           ANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTD
Sbjct: 121 ANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTD 180

Query: 181 DCVYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEAINGS 226
           DCVYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEAINGS
Sbjct: 181 DCVYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEAINGS 226


>gi|1723479|sp|Q10319|YD67_SCHPO HYPOTHETICAL 24.9 KD PROTEIN
           C17G8.07 IN CHROMOSOME I >gi|1213256|emb|CAA93690|
           (Z69795) unknown [Schizosaccharomyces pombe]
           Length = 217
           
 Score =  199 bits (500), Expect = 2e-50
 Identities = 100/225 (44%), Positives = 141/225 (62%), Gaps = 16/225 (7%)

Query: 1   MAPTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIK 60
           MAP  + R+    +SRPI+ GN AK +   +   AP +HTH W IFV G   EDIS +++
Sbjct: 1   MAP--NTRVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVR 58

Query: 61  KVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPY 120
           KVVFKLHDTY NP R+IE+PPFE+ ETGWGEFDI ++++F  EA+EK L FYH L+LHPY
Sbjct: 59  KVVFKLHDTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPY 118

Query: 121 ANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRP---GNLLPSN 177
                           +  +    V SV ++EIVFNEP E  +K+L   P   G+ L   
Sbjct: 119 G-----------PRMEEMKASGGLVESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVE 167

Query: 178 KTDDCVYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEA 222
              D  +S+QLEQ+E D+++  I++V K I+  KQ++++L  Q++
Sbjct: 168 SEPDHPFSQQLEQDEADKLDFAIQEVKKTIEMYKQQVQSLQGQKS 212


>gi|4210496 (U61384) GAS41 protein [Homo sapiens]
           Length = 227
           
 Score =  137 bits (342), Expect = 6e-32
 Identities = 75/222 (33%), Positives = 128/222 (56%), Gaps = 22/222 (9%)

Query: 3   PTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKV 62
           P    R+K +++ +PI+YGN A+  G  +  +    HTH WT++V+  +NED+S ++KK+
Sbjct: 10  PDSGGRVKGVTIVKPIVYGNVARYFGKKREEDG---HTHQWTVYVKPYRNEDMSAYVKKI 66

Query: 63  VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYAN 122
            FKLH++Y NP+R +  PP+E+TETGWGEF+I IK++F+ + NE+ +  YH L+L     
Sbjct: 67  QFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFI-DPNERPVTLYHLLKLF---- 121

Query: 123 PVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTDDC 182
                     Q+ T+       V S ++DE++F +P     ++L +     L + K +  
Sbjct: 122 ----------QSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLTTSRQLTLGAYKHE-- 169

Query: 183 VYSKQLEQEEIDRIEIGIEKVDKEIDELKQKLENLVKQEAIN 224
               +LE +  +++E   +K   EI ELK++L+    +E IN
Sbjct: 170 TEFAELEVKTREKLEAAKKKTSFEIAELKERLK--ASRETIN 209


>gi|3878581|emb|CAB01234| (Z77667) predicted using Genefinder;
           Similarity to Human AF-9 protein (TR:E221835)
           [Caenorhabditis elegans]
           Length = 211
           
 Score =  133 bits (331), Expect = 1e-30
 Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 26/218 (11%)

Query: 5   ISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVF 64
           I +R+K  ++ +PI+YGNTA   G  +  +   +HTH WT+F++    ED + +I+KV F
Sbjct: 4   IVERMKKKNIVKPIVYGNTATPFGYKRDSD---QHTHQWTVFLKPYLIEDPTKWIRKVQF 60

Query: 65  KLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPV 124
           KLH++Y  P R +E PP+E+TETGWGEF+I I++YFV + NEK +  +H LRL       
Sbjct: 61  KLHESYAVPYRVVEKPPYEVTETGWGEFEIQIRIYFV-DPNEKPITAFHYLRLF------ 113

Query: 125 PNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSNKTDDCVY 184
                   Q T +  S +  V   ++DEI+F EP  + +K L +  G      + D   +
Sbjct: 114 --------QPTIELPSGNQIVCMEFYDEIIFQEPTVQMYKALQASDG-----KRPDKQAF 160

Query: 185 SKQLEQEEIDRIEIG---IEKVDKEIDELKQKLENLVK 219
              +EQ +    E+G    +++  EI++L++ L++  K
Sbjct: 161 LNDIEQVKTRTRELGEVAQKEIAAEIEDLRESLKDAHK 198


>gi|1168365|sp|P42568|AF9_HUMAN AF-9 PROTEIN >gi|2134712|pir||I39411
           AF-9 protein - human >gi|306449 (L13744) AF-9 [Homo
           sapiens]
           Length = 568
           
 Score = 83.5 bits (203), Expect = 1e-15
 Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 20/133 (15%)

Query: 40  THLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVY 99
           TH W +FVRGP++ +I +F++KVVF LH+++P P R  + PP+++ E+G+  F + I+VY
Sbjct: 29  THDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVY 88

Query: 100 FVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPN 159
           F  +   + + F + L LH   +P                     V+ +  +++ FN P 
Sbjct: 89  FKNKEEPRKVRFDYDLFLHLEGHP--------------------PVNHLRCEKLTFNNPT 128

Query: 160 EEFFKILMSRPGN 172
           E+F + L+   G+
Sbjct: 129 EDFRRKLLKAGGD 141


>gi|2135571|pir||I58377 LTG19 - human >gi|436042|gnl|PID|d1003916
           (D14539) LTG19 [Homo sapiens]
           Length = 559
           
 Score = 78.0 bits (189), Expect = 5e-14
 Identities = 43/137 (31%), Positives = 74/137 (53%), Gaps = 21/137 (15%)

Query: 40  THLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVY 99
           TH W +FVRGP+  DI +F++KVVF LHD++P P R  + PP+++ E+G+  F + I+V+
Sbjct: 29  THDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVH 88

Query: 100 FVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPN 159
           F  +   + + F + L L+   NP                     V+ +  +++ FN P 
Sbjct: 89  FKNKEEPRKVCFTYDLFLNLEGNP--------------------PVNHLRCEKLTFNNPT 128

Query: 160 EEF-FKILMSRPGNLLP 175
            EF +K+L +    ++P
Sbjct: 129 TEFRYKLLRAGGVMVMP 145


>gi|462010|sp|Q03111|ENL_HUMAN ENL PROTEIN >gi|345835|pir||B44265
           ENL (translocation) - human >gi|182110 (L04285)
           translocated to HRX in t(11;19) leukemia [Homo sapiens]
           Length = 559
           
 Score = 78.0 bits (189), Expect = 5e-14
 Identities = 43/137 (31%), Positives = 74/137 (53%), Gaps = 21/137 (15%)

Query: 40  THLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVY 99
           TH W +FVRGP+  DI +F++KVVF LHD++P P R  + PP+++ E+G+  F + I+V+
Sbjct: 29  THDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVH 88

Query: 100 FVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPN 159
           F  +   + + F + L L+   NP                     V+ +  +++ FN P 
Sbjct: 89  FKNKEEPRKVCFTYDLFLNLEGNP--------------------PVNHLRCEKLTFNNPT 128

Query: 160 EEF-FKILMSRPGNLLP 175
            EF +K+L +    ++P
Sbjct: 129 TEFRYKLLRAGGVMVMP 145


>gi|4049527|emb|CAA22554| (AL034565) putative transcription
           initiation factor tfiif small subunit
           [Schizosaccharomyces pombe]
           Length = 241
           
 Score = 66.0 bits (158), Expect = 2e-10
 Identities = 28/71 (39%), Positives = 47/71 (65%), Gaps = 2/71 (2%)

Query: 50  PQNEDI-SYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANE-K 107
           PQ E+  + F+ +V +KLH T+ NP R+I  PPF++ E GWGEF++ I +Y+ ++  E +
Sbjct: 44  PQGEETDASFVDRVTYKLHPTFQNPTRTIRKPPFQIKEQGWGEFEMEIIIYYADKGGEHR 103

Query: 108 VLNFYHRLRLH 118
            L++ H  + H
Sbjct: 104 FLHYLHFQQEH 114


>gi|461510|sp|P35189|T2FC_YEAST TRANSCRIPTION INITIATION FACTOR
           TFIIF SMALL SUBUNIT (TRANSCRIPTION FACTOR G 30 KD
           SUBUNIT) (ANC1 PROTEIN) >gi|481383|pir||S38568
           transcription initiation factor IIF 30K chain - yeast
           (Saccharomyces cerevisiae) >gi|414198|emb|CAA81125|
           (Z26040) Anc1p [Saccharomyces cerevisiae] >gi|639706
           (U13017) transcription initiation factor TFIIF small
           subunit [Saccharomyces cerevisiae] >gi|2347166 (U43703)
           Ypl129wp [Saccharomyces cerevisiae]
           Length = 244
           
 Score = 55.0 bits (130), Expect = 4e-07
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 32  PP--NAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGW 89
           PP  N P     +  + +     E  +    KV++ LH T+ NP R+   PPF + E GW
Sbjct: 22  PPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGW 81

Query: 90  GEFDINIKVYFVEEANEK 107
           G F ++I V+ +E+A E+
Sbjct: 82  GGFPLDISVFLLEKAGER 99


>gi|1256510|emb|CAA49192| (X69394) ORF2 [Saccharomyces cerevisiae]
           Length = 235
           
 Score = 55.0 bits (130), Expect = 4e-07
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 32  PP--NAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGW 89
           PP  N P     +  + +     E  +    KV++ LH T+ NP R+   PPF + E GW
Sbjct: 13  PPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGW 72

Query: 90  GEFDINIKVYFVEEANEK 107
           G F ++I V+ +E+A E+
Sbjct: 73  GGFPLDISVFLLEKAGER 90


>gi|2132084|pir||S60940 hypothetical protein YOR213c - yeast
           (Saccharomyces cerevisiae) >gi|1050765|emb|CAA63176|
           (X92441) YOR50-3 [Saccharomyces cerevisiae]
           >gi|1420497|emb|CAA99429| (Z75121) ORF YOR213c
           [Saccharomyces cerevisiae]
           Length = 248
           
 Score = 48.0 bits (112), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 59  IKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANE 106
           + K ++ LH ++  P R + + PF + ETGWGEF++ I+ +F+  A +
Sbjct: 52  LSKCIYHLHSSFKQPKRRLNSLPFFIKETGWGEFNLKIECFFIGNAGK 99


>gi|2326818|emb|CAA99431| (Z75122) ORF YOR213c [Saccharomyces
           cerevisiae]
           Length = 195
           
 Score = 48.0 bits (112), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 59  IKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANE 106
           + K ++ LH ++  P R + + PF + ETGWGEF++ I+ +F+  A +
Sbjct: 52  LSKCIYHLHSSFKQPKRRLNSLPFFIKETGWGEFNLKIECFFIGNAGK 99


  Database: nr
    Posted date:  Mar 13, 1999  7:20 PM
  Number of letters in database: 110,384,460
  Number of sequences in database:  361,503
  
Lambda     K      H
   0.313    0.134    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54272785
Number of Sequences: 361503
Number of extensions: 2491020
Number of successful extensions: 7742
Number of sequences better than 1.0e-03: 12
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7722
Number of HSP's gapped (non-prelim): 13
length of query: 226
length of database: 110384460
effective HSP length: 55
effective length of query: 171
effective length of database: 90501795
effective search space: 15475806945
effective search space used: 15475806945
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 102 (44.1 bits)