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Finding cDNAs
UGID:315500     UniGene Mm.221403     Mus musculus (mouse)   Pdgfra Order cDNA clone, Links
Platelet derived growth factor receptor, alpha polypeptide (Pdgfra), transcript variant 1, mRNA (Pdgfra)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001076785.1 platelet derived growth factor receptor, alpha polypeptide M. musculus 100.0 1088
NP_006197.1 platelet-derived growth factor receptor alpha precursor H. sapiens 96.0 1088
NP_001080553.1 platelet derived growth factor receptor, alpha polypeptide X. laevis 86.3 1078
NP_571534.1 platelet derived growth factor receptor alpha D. rerio 78.3 1053
NP_995647.1 PDGF- and VEGF-receptor related CG8222-PF, isoform F D. melanogaster 45.6 601

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mixed; brain; extraembryonic tissue; mammary gland; eye; pancreas; uncharacterized tissue; testis; molar; bladder; connective tissue; lymph node; spleen; kidney; heart; intestine; prostate; uterus; epididymis; thymus; vagina; lung; joint; adipose tissue; bone marrow; inner ear; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5 C3.3|5 42.0 cM
UniSTS entry: Chr 5 RH135893
UniSTS entry: Chr 5 Pdgfra
UniSTS entry: Chr 5 M84607
UniSTS entry: Chr 5 Pdgfra
UniSTS entry: Chr 5 PMC317149P1
UniSTS entry: BB221015
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC037467.1 Mus musculus platelet derived growth factor receptor, alpha polypeptide, mRNA (cDNA clone IMAGE:4209622), partial cds PA
AK081664.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130063B01 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
AK035501.1 Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530057A20 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
U47923.1 Mus musculus PDGF-alpha-receptor mRNA, cryptic exon 2, partial 5'UTR
AK011378.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610011K04 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence
BC020405.1 Mus musculus platelet derived growth factor receptor, alpha polypeptide, mRNA (cDNA clone IMAGE:3979390) P
BC053036.1 Mus musculus platelet derived growth factor receptor, alpha polypeptide, mRNA (cDNA clone MGC:62279 IMAGE:5704645), complete cds PA
AK139094.1 Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730019I10 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
AK163952.1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230097K17 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
AK145097.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830041I20 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
AK136490.1 Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030623J19 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
AK131630.1 Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500034N18 product:unclassifiable, full insert sequence
AK147267.1 Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:M5C1004H23 product:platelet derived growth factor receptor, alpha polypeptide, full insert sequence P
DQ912857.1 Mus musculus strain SJL/JHanHsd platelet-derived growth factor receptor alpha mRNA, partial cds P
NM_001083316.1 Mus musculus platelet derived growth factor receptor, alpha polypeptide (Pdgfra), transcript variant 2, mRNA P
M84607.1 Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRNA, complete cds PA
M57683.1 M.musculus PDGF alpha receptor (mPDGF-alpha-R) mRNA, complete cds P
NM_011058.2 Mus musculus platelet derived growth factor receptor, alpha polypeptide (Pdgfra), transcript variant 1, mRNA P

EST sequences (10 of 310) [Show all sequences]

CA569974.1 Clone NIA:K0449E11_IMAGE:30063802 bone marrow 5' read
CA774419.1 pancreas 3' read P
BY003749.1 Clone E530117A18 brain 5' read P
BY003750.1 Clone E530117A19 brain 5' read P
BY134665.1 Clone L930048O16 embryonic tissue 5' read P
BY141052.1 Clone L930140O20 embryonic tissue 5' read P
BY268794.1 Clone K430027E21 brain 5' read P
BY323298.1 Clone L030018K21 connective tissue 5' read
BY325502.1 Clone L030031H01 connective tissue 5' read
BY325633.1 Clone L030032B20 connective tissue 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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