R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 262 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|6066285|gb|AAF03236.1|AF180143_1 (AF180143) ubiquitin carrier protein 4
[Glycine max]
Length = 183
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 538 (189.4 bits), Expect = 7.3e-51, P = 7.3e-51
Identities = 98/102 (96%), Positives = 100/102 (98%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYV FHGPN+SPYHGGVWKVRVELPDAYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNV 102
>gi|1174850|sp|P42749|UBC5_ARATH UBIQUITIN-CONJUGATING ENZYME E2-21 KD 2
(UBIQUITIN-PROTEIN LIGASE 5) (UBIQUITIN CARRIER PROTEIN 5)
Length = 185
Frame 2 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 185
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 41..88
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..145
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..144
PRODOM PD030859: UBC4(1) UBC5(1) 146..184
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 499 (175.7 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 91/102 (89%), Positives = 96/102 (94%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEF+V+F GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNV 102
>gi|1174847|sp|P42748|UBC4_ARATH UBIQUITIN-CONJUGATING ENZYME E2-21 KD 1
(UBIQUITIN-PROTEIN LIGASE 4) (UBIQUITIN CARRIER PROTEIN 4)
>gi|431266|gb|AAA32900.1| (L19354) ubiquitin conjugating enzyme
[Arabidopsis thaliana]
Length = 187
Frame 2 hits (HSPs): ____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 41..88
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..147
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..145
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..144
PRODOM PD030859: UBC4(1) UBC5(1) 146..186
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 494 (173.9 bits), Expect = 3.3e-46, P = 3.3e-46
Identities = 89/102 (87%), Positives = 96/102 (94%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYV+F+GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNV 102
>gi|1076427|pir||S43784 ubiquitin--protein ligase (EC 6.3.2.19) - Arabidopsis
thaliana
Length = 189
Frame 2 hits (HSPs): ___________________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 494 (173.9 bits), Expect = 3.3e-46, P = 3.3e-46
Identities = 89/102 (87%), Positives = 96/102 (94%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYV+F+GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNV 102
>gi|9758043|dbj|BAB08506.1| (AB006707) ubiquitin-conjugating enzyme E2-21 kD 1
(ubiquitin-protein ligase 4) (ubiquitin carrier protein 4)
[Arabidopsis thaliana]
Length = 187
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 494 (173.9 bits), Expect = 3.3e-46, P = 3.3e-46
Identities = 89/102 (87%), Positives = 96/102 (94%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKVE INDGMQEFYV+F+GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNV 102
>gi|136644|sp|P16577|UBC4_WHEAT UBIQUITIN-CONJUGATING ENZYME E2-23 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|100765|pir||A34506 23K ubiquitin carrier protein E2 - wheat
>gi|170782|gb|AAA34309.1| (M28059) ubiquitin carrier protein
[Triticum aestivum]
Length = 184
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 41..88
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..147
Entrez binding site: UBIQUITIN. 85
Entrez mutagenized site: C->S: LOSS OF ACTIVITY 85
Entrez Domain: ASP/GLU-RICH (BASIC). 141..176
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..145
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..144
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 490 (172.5 bits), Expect = 8.9e-46, P = 8.9e-46
Identities = 90/102 (88%), Positives = 94/102 (92%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMDLMKLMMSDYKV+MINDGM EF+V FHGP DS Y GGVWKVRVEL +AYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPSIGF NKIYHPNVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNI 102
>gi|629564|pir||S43786 ubiquitin--protein ligase (EC 6.3.2.19) - Arabidopsis
thaliana
Length = 187
Frame 2 hits (HSPs): ____________________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 487 (171.4 bits), Expect = 1.8e-45, P = 1.8e-45
Identities = 89/102 (87%), Positives = 95/102 (93%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREM +MKLMMSDYKVEMINDGMQEF+V+F GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMLMMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNV 102
>gi|431270|gb|AAA32902.1| (L19356) ubiquitin conjugating enzyme [Arabidopsis
thaliana]
Length = 142
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 486 (171.1 bits), Expect = 2.4e-45, P = 2.4e-45
Identities = 88/98 (89%), Positives = 93/98 (94%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEF+V+F GP DS Y GGVWK+RVELPDAYP
Sbjct: 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFD 379
YKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMF+
Sbjct: 61 YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFE 98
>gi|1076428|pir||S43785 ubiquitin--protein ligase (EC 6.3.2.19) - Arabidopsis
thaliana
Length = 185
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 185
0 50 100 150
__________________
Annotated Domains:
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..147
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 82/102 (80%), Positives = 93/102 (91%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP DS Y GGVWK++VELP+AYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINV 102
>gi|1174851|sp|P42750|UBC6_ARATH UBIQUITIN-CONJUGATING ENZYME E2-21 KD 3
(UBIQUITIN-PROTEIN LIGASE 6) (UBIQUITIN CARRIER PROTEIN 6)
Length = 183
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 41..88
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..147
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..145
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..144
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 82/102 (80%), Positives = 93/102 (91%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP DS Y GGVWK++VELP+AYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINV 102
>gi|1076429|pir||S52661 ubiquitin--protein ligase (EC 6.3.2.19) - Arabidopsis
thaliana >gi|807095|gb|AAB32508.1| UBC6=E2-related
ubiquitin-conjugating protein [Arabidopsis thaliana, Peptide, 183
aa] >gi|3702350|gb|AAC62907.1| (AC005397) putative
ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Length = 183
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
__________________
Annotated Domains:
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..147
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 73..88
__________________
Plus Strand HSPs:
Score = 466 (164.0 bits), Expect = 3.1e-43, P = 3.1e-43
Identities = 81/102 (79%), Positives = 93/102 (91%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
M+SPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP DS Y GGVWK++VELP+AYP
Sbjct: 1 MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMFDL N+
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINV 102
>gi|431268|gb|AAA32901.1| (L19355) ubiquitin conjugating enzyme [Arabidopsis
thaliana]
Length = 140
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 140
0 50 100
Plus Strand HSPs:
Score = 456 (160.5 bits), Expect = 3.6e-42, P = 3.6e-42
Identities = 79/98 (80%), Positives = 90/98 (91%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP DS Y GGVWK++VELP+AYP
Sbjct: 1 MSSPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFD 379
YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMF+
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFE 98
>gi|11272330|pir||T50342 ubiquitin conjugating enzyme [imported] - fission
yeast (Schizosaccharomyces pombe) >gi|6983771|emb|CAB75415.1|
(AL139314) ubiquitin conjugating enzyme [Schizosaccharomyces pombe]
Length = 184
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
Plus Strand HSPs:
Score = 439 (154.5 bits), Expect = 2.3e-40, P = 2.3e-40
Identities = 73/102 (71%), Positives = 92/102 (90%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSSP +R E D+MKL+MSDY+V ++ND MQEFYV+FHGP+++PY GG+WKV VELP YP
Sbjct: 1 MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
+KSPSIGF+N+I+HPN+DE+SGSVCLDVINQTWSPMFD+ N+
Sbjct: 61 WKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINI 102
>gi|2815252|emb|CAA50503.1| (X71381) ubiquitin carrier protein [Arabidopsis
thaliana]
Length = 179
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 179
0 50 100 150
Plus Strand HSPs:
Score = 426 (150.0 bits), Expect = 5.4e-39, P = 5.4e-39
Identities = 73/94 (77%), Positives = 85/94 (90%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
M+SPSKRREMD+MKLMMSDYKV+ +ND +Q FYV FHGP D Y GGVWK++VELP+AYP
Sbjct: 1 MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDGLYQGGVWKIKVELPEAYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWS 367
YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTW+
Sbjct: 61 YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWN 94
>gi|12325002|gb|AAG52444.1|AC010852_1 (AC010852) putative ubiquitin-conjugating
enzyme; 71876-72824 [Arabidopsis thaliana]
Length = 170
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 426 (150.0 bits), Expect = 5.4e-39, P = 5.4e-39
Identities = 76/87 (87%), Positives = 81/87 (93%), Frame = +2
Query: 131 MMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHP 310
MMSDYKVEMINDGMQEF+V+F GP DS Y GGVWK+RVELPDAYPYKSPS+GFI KIYHP
Sbjct: 1 MMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHP 60
Query: 311 NVDEMSGSVCLDVINQTWSPMFDLSNL 391
NVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 61 NVDEMSGSVCLDVINQTWSPMFDLVNV 87
>gi|6579192 ref|NP_010904.2| ubiquitin-conjugating enzyme; ubiquitin-protein
ligase; Ubc8p [Saccharomyces cerevisiae]
>gi|549146|sp|P28263|UBC8_YEAST UBIQUITIN-CONJUGATING ENZYME E2-24
KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1078448|pir||B53516 ubiquitin--protein ligase (EC 6.3.2.19)
UBC8 - yeast (Saccharomyces cerevisiae)
Length = 218
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 400 (140.8 bits), Expect = 3.1e-36, P = 3.1e-36
Identities = 68/102 (66%), Positives = 87/102 (85%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYP 265
MSS +R E D+MKL+MSD++V++IND MQEF+V+F GP D+PY GVW++ VELPD YP
Sbjct: 1 MSSSKRRIETDVMKLLMSDHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYP 60
Query: 266 YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YKSPSIGF+NKI+HPN+D SGS+CLDVIN TWSP++DL N+
Sbjct: 61 YKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINI 102
>gi|602379|gb|AAB64489.1| (U18530) Ubiquitin-conjugating enzyme [Saccharomyces
cerevisiae]
Length = 206
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 373 (131.3 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 62/90 (68%), Positives = 79/90 (87%), Frame = +2
Query: 122 MKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKI 301
MKL+MSD++V++IND MQEF+V+F GP D+PY GVW++ VELPD YPYKSPSIGF+NKI
Sbjct: 1 MKLLMSDHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKI 60
Query: 302 YHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
+HPN+D SGS+CLDVIN TWSP++DL N+
Sbjct: 61 FHPNIDIASGSICLDVINSTWSPLYDLINI 90
>gi|7290876|gb|AAF46318.1| (AE003442) CG2257 gene product [alt 1] [Drosophila
melanogaster] >gi|7290877|gb|AAF46319.1| (AE003442) CG2257 gene
product [alt 2] [Drosophila melanogaster]
Length = 183
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 360 (126.7 bits), Expect = 5.3e-32, P = 5.3e-32
Identities = 66/104 (63%), Positives = 87/104 (83%), Frame = +2
Query: 86 MSSPS--KRR-EMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPD 256
MSSPS KRR + D++KL+ S ++V ++ G+ EF+V+F GP ++PY GGVWKVRV LPD
Sbjct: 1 MSSPSAGKRRMDNDVIKLIESKHEVTILG-GLNEFHVKFFGPTETPYEGGVWKVRVYLPD 59
Query: 257 AYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YP+KSPSIGF+NKIYHPN+DE SG+VCLDVINQ W+ ++DLSN+
Sbjct: 60 NYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYDLSNI 104
>gi|4507783 ref|NP_003335.1| ubiquitin-conjugating enzyme E2H (homologous to
yeast UBC8) [Homo sapiens] >gi|6678487 ref|NP_033485.1|
ubiquitin-conjugating enzyme E2H [Mus musculus] >gi|11419570
ref|XP_004699.1| ubiquitin-conjugating enzyme E2H (homologous to
yeast UBC8) [Homo sapiens] >gi|586141|sp|P37286|UBCH_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-21 KDA (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) (UBCH2) (E2-20K) >gi|631492|pir||A53516
ubiquitin--protein ligase (EC 6.3.2.19) E2H - human
>gi|1363983|pir||JC4308 ubiquitin--protein ligase (EC 6.3.2.19) -
mouse >gi|474827|emb|CAA82525.1| (Z29328) Ubiquitin-conjugating
enzyme UbcH2 [Homo sapiens] >gi|483538|emb|CAA82527.1| (Z29330)
ubiquitin-conjugating enzyme UbcH2 [Homo sapiens]
>gi|897847|gb|AAA91975.1| (U19854) E2-20K [Mus musculus]
Length = 183
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 359 (126.4 bits), Expect = 6.8e-32, P = 6.8e-32
Identities = 65/104 (62%), Positives = 88/104 (84%), Frame = +2
Query: 86 MSSPS--KRR-EMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPD 256
MSSPS KRR + D++KL+ S ++V ++ G+ EF V+F+GP +PY GGVWKVRV+LPD
Sbjct: 1 MSSPSPGKRRMDTDVVKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 59
Query: 257 AYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQTW+ ++DL+N+
Sbjct: 60 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNI 104
>gi|12324943|gb|AAG52422.1|AC011622_10 (AC011622) putative ubiquitin-protein
ligase, 5' partial; 197-892 [Arabidopsis thaliana]
Length = 143
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
Identities = 53/59 (89%), Positives = 56/59 (94%), Frame = +2
Query: 215 YHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
Y GGVWK+RVELPDAYPYKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMFDL N+
Sbjct: 2 YEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNV 60
>gi|7332204|gb|AAF60891.1| (AC024876) contains similarity to SW:UBCH_HUMAN
[Caenorhabditis elegans]
Length = 241
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 241
0 50 100 150 200
Plus Strand HSPs:
Score = 226 (79.6 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 39/69 (56%), Positives = 53/69 (76%), Frame = +2
Query: 215 YHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQT----------W 364
Y GVW++RV++PD YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ W
Sbjct: 70 YENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQVGIGGRSVWKAW 129
Query: 365 SPMFDLSNL 391
+ ++DL+N+
Sbjct: 130 TALYDLTNI 138
Score = 96 (33.8 bits), Expect = 0.0066, P = 0.0066
Identities = 24/73 (32%), Positives = 42/73 (57%), Frame = +2
Query: 101 KRR-EMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSP 277
KRR + D++KL+ +++V+++N G EF V+FHGP D + + R LP + K
Sbjct: 9 KRRIDCDVVKLISHNHEVQIVN-GCSEFIVRFHGPKDRNFSPKNFNFRQVLP-IFRTKIL 66
Query: 278 SIGFINKIYHPNVD 319
+ + N ++ VD
Sbjct: 67 AAAYENGVWRIRVD 80
>gi|7299561|gb|AAF54747.1| (AE003694) CG14739 gene product [Drosophila
melanogaster]
Length = 206
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 215 (75.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 37/97 (38%), Positives = 59/97 (60%), Frame = +2
Query: 101 KRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPS 280
+R + D+ +L+ S Y+ ++D M V GP S Y GG+W V V +P YP +P
Sbjct: 16 RRLDRDVNRLLASGYRTT-VDDDMTNLNVCLEGPLGSAYEGGIWTVNVTMPQDYPLTAPR 74
Query: 281 IGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
+ F+ KI HPN++ ++G VC++V+ Q WS +DL N+
Sbjct: 75 VRFVTKILHPNIEFITGLVCMNVLKQAWSSSYDLVNI 111
>gi|464982|sp|P35128|UBC3_DROME UBIQUITIN-CONJUGATING ENZYME E2-17 KDA
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (BENDLESS
PROTEIN) >gi|422431|pir||S35793 gene bendless protein - fruit fly
(Drosophila melanogaster) >gi|304668|gb|AAA28392.1| (L20126) neural
protein [Drosophila melanogaster] >gi|546724|gb|AAB30753.1|
(S70118) ubiquitin-conjugating enzyme homolog=ben [Drosophila
melanogaster, pupa, Peptide, 151 aa] >gi|7292948|gb|AAF48338.1|
(AE003494) ben gene product [Drosophila melanogaster]
>gi|743005|prf||2011314A bendless gene [Drosophila melanogaster]
Length = 151
Frame 2 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 44..91
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..148
Entrez binding site: UBIQUITIN (BY SIMILARITY). 87
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..146
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..145
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 76..90
__________________
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 42/104 (40%), Positives = 61/104 (58%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSDYK-VEMIND--GMQEFYVQFHGPNDSPYHGGVWKVRVELPD 256
MSS +R + +LM + I D + F+V GPNDSP+ GGV+K+ + LP+
Sbjct: 1 MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPE 60
Query: 257 AYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YP +P + FI KIYHPN+D + G +CLDV+ WSP + +
Sbjct: 61 DYPMSAPKVRFITKIYHPNIDRL-GRICLDVLKDKWSPALQIRTI 104
>gi|12311787|emb|CAC24487.1| (AJ298327) putative ubiquitin-conjugating enzyme
[Platichthys flesus]
Length = 98
Frame 2 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 208 (73.2 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 35/78 (44%), Positives = 49/78 (62%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ + M + GPNDSPYHGGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 19 VGEDMFHWQATITGPNDSPYHGGVFFLSVHFPTDYPFKPPKISFTTKIYHPNINS-NGSI 77
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 78 CLDILRSQWSPALTVSKV 95
>gi|1850816|emb|CAA72184.1| (Y11349) ubiquitin conjugating enzyme [Drosophila
melanogaster] >gi|7294892|gb|AAF50222.1| (AE003551) UbcD4 gene
product [Drosophila melanogaster]
Length = 199
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 206 (72.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 34/104 (32%), Positives = 63/104 (60%), Frame = +2
Query: 83 NMS-SPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVEL 250
NM+ S KR ++M+ ++ K+E++ND E + GP D+PY GG + + +++
Sbjct: 3 NMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKV 62
Query: 251 PDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDL 382
P+ YP+ P + FI +I+HPN+ ++G++CLD++ W+ L
Sbjct: 63 PETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTL 106
>gi|6723905|emb|CAA21178.2| (AL031788) ubiquitin-conjugating enzyme
[Schizosaccharomyces pombe]
Length = 217
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 38/105 (36%), Positives = 60/105 (57%), Frame = +2
Query: 86 MSSPSKRR---EM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELP 253
MS RR E+ D+ + + +V IND + F GP +PY GG + V +E+P
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 254 DAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSN 388
YP++ P + F KIYHPNV +G++CLD++ WSP++ + +
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKS 105
>gi|7437982|pir||T08465 ubiquitin--protein ligase (EC 6.3.2.19) - fruit fly
(Drosophila melanogaster) >gi|1359614|emb|CAA63424.1| (X92838)
ubiquitin conjugating enzyme [Drosophila melanogaster]
Length = 199
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 34/104 (32%), Positives = 62/104 (59%), Frame = +2
Query: 83 NMS-SPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVEL 250
NM+ S KR ++M+ ++ K+E++ND E + GP D+PY GG + + +++
Sbjct: 3 NMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKV 62
Query: 251 PDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDL 382
P+ YP+ P FI +I+HPN+ ++G++CLD++ W+ L
Sbjct: 63 PETYPFNPPKARFITRIWHPNISSVTGAICLDILKDNWAAAMTL 106
>gi|3834310|gb|AAC83026.1| (AC005679) Similar to Ubiquitin-conjugating enzyme
E2-17 KD gb|D83004 from Homo sapiens. ESTs gb|T88233, gb|Z24464,
gb|N37265, gb|H36151, gb|Z34711, gb|AA040983, and gb|T22122 come
from this gene. [Arabidopsis thaliana]
Length = 163
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 33/73 (45%), Positives = 48/73 (65%), Frame = +2
Query: 164 DGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCL 343
D M+ F V GP SPY GGV+K+ + LP+ YP +P + F+ KIYHPN+D++ G +CL
Sbjct: 32 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICL 90
Query: 344 DVINQTWSPMFDL 382
D++ WSP +
Sbjct: 91 DILKDKWSPALQI 103
>gi|5381319|gb|AAD42941.1|AF091621_1 (AF091621) ubiquitin-conjugating enzyme E2
[Catharanthus roseus]
Length = 153
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 33/73 (45%), Positives = 48/73 (65%), Frame = +2
Query: 164 DGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCL 343
D M++F V GP SPY GGV+K+ + LP+ YP P + F+ KIYHPN+D++ G +CL
Sbjct: 32 DNMRDFNVMILGPAQSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKL-GRICL 90
Query: 344 DVINQTWSPMFDL 382
D++ WSP +
Sbjct: 91 DILKDKWSPALQI 103
>gi|11359599|pir||T48741 probable ubiquitin--protein ligase [imported] -
Neurospora crassa >gi|7635791|emb|CAB88557.1| (AL353819) probable
ubiquitin--protein ligase [Neurospora crassa]
Length = 235
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 235
0 50 100 150 200
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 31/61 (50%), Positives = 46/61 (75%), Frame = +2
Query: 191 FHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSP 370
F GP DSPY GG ++V +++PD YP+K PS+ I KI+HPNV ++G++CLD++ WSP
Sbjct: 42 FSGPPDSPYAGGTYEVDIQIPDKYPFKPPSMYLITKIWHPNVSSVTGAICLDILGTAWSP 101
Query: 371 M 373
+
Sbjct: 102 V 102
>gi|6320264 ref|NP_010344.1| ubiquitin-conjugating enzyme; Ubc5p [Saccharomyces
cerevisiae] >gi|136646|sp|P15732|UBC5_YEAST UBIQUITIN-CONJUGATING
ENZYME E2-16 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) >gi|101686|pir||S22858 ubiquitin--protein ligase (EC
6.3.2.19) UBC5 - yeast (Saccharomyces cerevisiae)
>gi|295934|emb|CAA35529.1| (X17494) ubiquitin-conjugating enzyme
[Saccharomyces cerevisiae] >gi|706825|emb|CAA58975.1| (X84162)
ubiquitin conjugating enzyme [Saccharomyces cerevisiae]
>gi|798910|emb|CAA89088.1| (Z49209) Ubc5p [Saccharomyces
cerevisiae] >gi|1431507|emb|CAA98877.1| (Z74355) ORF YDR059c
[Saccharomyces cerevisiae]
Length = 148
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 201 (70.8 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 41/103 (39%), Positives = 61/103 (59%), Frame = +2
Query: 86 MSSPSKR--REM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPD 256
MSS SKR +E+ DL + + + D + + GP+DSPY GGV+ + + P
Sbjct: 1 MSS-SKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPT 59
Query: 257 AYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YP+K P + F KIYHPN++ SG++CLD++ WSP LS +
Sbjct: 60 DYPFKPPKVNFTTKIYHPNINS-SGNICLDILKDQWSPALTLSKV 103
>gi|4507777 ref|NP_003331.1| ubiquitin-conjugating enzyme E2D 3 (homologous to
yeast UBC4/5); UbcH5C [Homo sapiens] >gi|11435728 ref|XP_003400.1|
ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5)
[Homo sapiens] >gi|1351345|sp|P47986|UB5C_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3 (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) (E2(17)KB 3) >gi|1085588|pir||S53358
ubiquitin-conjugating enzyme E2.17kB - rat
>gi|595666|gb|AAA85100.1| (U13175) ubiquitin conjugating enzyme
[Rattus norvegicus] >gi|595670|gb|AAA85102.1| (U13177) ubiquitin
conjugating enzyme [Rattus norvegicus] >gi|1145691|gb|AAA91461.1|
(U39318) UbcH5C [Homo sapiens] >gi|6474928|dbj|BAA87330.1|
(AB006852) phosphoarginine phosphatase [Rattus norvegicus]
>gi|7012908|gb|AAF35234.1| (AF224669) ubiquitin-conjugating enzyme
E2D 3 [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 32/78 (41%), Positives = 48/78 (61%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ D M + GPNDSPY GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 85 CLDILRSQWSPALTISKV 102
>gi|4507775 ref|NP_003330.1| ubiquitin-conjugating enzyme E2D 2 (homologous to
yeast UBC4/5); UbcH5B [Homo sapiens] >gi|9910600 ref|NP_064296.1|
ubiquitin conjugating enzyme 2e [Mus musculus]
>gi|1717849|sp|P51669|UB5B_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-17
KDA 2 (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
(E2(17)KB 2) >gi|1085589|pir||S53359 ubiquitin conjugating enzyme
(E217kB) - rat >gi|595668|gb|AAA85101.1| (U13176) ubiquitin
conjugating enzyme [Rattus norvegicus] >gi|1145689|gb|AAA91460.1|
(U39317) UbcH5B [Homo sapiens] >gi|1480742|gb|AAB05772.1| (U62483)
ubiquitin conjugating enzyme [Mus musculus]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 32/78 (41%), Positives = 48/78 (61%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ D M + GPNDSPY GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 85 CLDILRSQWSPALTISKV 102
>gi|2136339|pir||I59365 ubiquitin conjugating enzyme - human
>gi|765056|gb|AAC41750.1| (L40146) ubiquitin conjugating enzyme
[Homo sapiens] >gi|1096569|prf||2111484A ubiquitin-conjugating
enzyme [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 32/78 (41%), Positives = 48/78 (61%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ D M + GPNDSPY GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 85 CLDILRSQWSPALTISKV 102
>gi|6320297 ref|NP_010377.1| ubiquitin-conjugating enzyme; Ubc13p
[Saccharomyces cerevisiae] >gi|1717864|sp|P52490|UBCC_YEAST
UBIQUITIN-CONJUGATING ENZYME E2-17.5 KDA (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) >gi|2131382|pir||S58092 hypothetical
protein YDR092w - yeast (Saccharomyces cerevisiae)
>gi|914876|emb|CAA90451.1| (Z50111) unknown [Saccharomyces
cerevisiae] >gi|1480355|emb|CAA67806.1| (X99443)
ubiquitin-conjugating enzyme [Saccharomyces cerevisiae]
Length = 153
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 40/101 (39%), Positives = 60/101 (59%), Frame = +2
Query: 86 MSSPSKRREMDLMKLMMSD----YKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELP 253
M+S KR + KL+ SD E +D ++ F V GP SPY G++++ + LP
Sbjct: 1 MASLPKRIIKETEKLV-SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 59
Query: 254 DAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDL 382
D YP ++P + F+ KIYHPN+D + G +CLDV+ WSP +
Sbjct: 60 DDYPMEAPKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQI 101
>gi|8393719 ref|NP_057067.1| ubiquitin-conjugating enzyme HBUCE1 [Homo sapiens]
>gi|4868140|gb|AAD31180.1|AF125044_1 (AF125044)
ubiquitin-conjugating enzyme HBUCE1 [Homo sapiens]
>gi|7022710|dbj|BAA91697.1| (AK001446) unnamed protein product
[Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 32/78 (41%), Positives = 48/78 (61%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ D + + GPNDSPY GGV+ + + P YP+K P + F KIYHPN++ +GS+
Sbjct: 26 VGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 84
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 85 CLDILRSQWSPALTVSKV 102
>gi|9802775|gb|AAF99844.1|AC051629_11 (AC051629) Putative ubiquitin-conjugating
enzyme E2 [Arabidopsis thaliana]
Length = 153
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 198 (69.7 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 32/73 (43%), Positives = 48/73 (65%), Frame = +2
Query: 164 DGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCL 343
+ M+ F V GP SPY GGV+K+ + LP+ YP +P + F+ KIYHPN+D++ G +CL
Sbjct: 32 ENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICL 90
Query: 344 DVINQTWSPMFDL 382
D++ WSP +
Sbjct: 91 DILKDKWSPALQI 103
>gi|3915196|sp|Q95044|UBCB_SPISO UBIQUITIN-CONJUGATING ENZYME E2-C
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1493838|gb|AAB06237.1| (U52949) cyclin-specific ubiquitin
carrier protein E2-C [Spisula solidissima]
Length = 177
Frame 2 hits (HSPs): __________________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
__________________
Annotated Domains:
Entrez binding site: UBIQUITIN. 114
Entrez mutagenized site: C->S: INHIBITION OF CY 114
PFAM UQ_con: Ubiquitin-conjugating enzyme 22..172
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 22..163
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 103..117
__________________
Plus Strand HSPs:
Score = 197 (69.3 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 41/118 (34%), Positives = 68/118 (57%), Frame = +2
Query: 38 RRKGKARDQPKHTQRNMSSPSKRREMDLMKLMMS-DYKVEMINDG--MQEFYVQFHGPND 208
R+K + RD +R+ S SKR + +L L+MS D + DG + ++ GP D
Sbjct: 14 RQKERPRDMTTSKERH--SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKD 71
Query: 209 SPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSN 388
+ Y +K+ +E P YPYK P + F +HPNVD+ SG++CLD++ + W+ +D+
Sbjct: 72 TVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRT 130
Query: 389 L 391
+
Sbjct: 131 I 131
>gi|7493562|pir||T11716 ubiquitin conjugating enzyme - fission yeast
(Schizosaccharomyces pombe) >gi|3560247|emb|CAA20714.1| (AL031532)
ubiquitin conjugating enzyme [Schizosaccharomyces pombe]
Length = 177
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 26/64 (40%), Positives = 47/64 (73%), Frame = +2
Query: 200 PNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFD 379
P++ Y GG +K R+++ D YP+ P + +NKIYHPN+D + G+VCL+++ Q W+P+ +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNID-IEGNVCLNILRQDWNPVLN 118
Query: 380 LSNL 391
L+++
Sbjct: 119 LNSI 122
Score = 38 (13.4 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 9/29 (31%), Positives = 12/29 (41%), Frame = +1
Query: 22 KEKAKEKKRQSKGPTKTHTEKHVFPKQAP 108
KE KEK P + +K V + P
Sbjct: 10 KEAQKEKNASGISPAQIRIQKDVTDLEIP 38
>gi|6319556 ref|NP_009638.1| ubiquitin-conjugating enzyme; Ubc4p [Saccharomyces
cerevisiae] >gi|136645|sp|P15731|UBC4_YEAST UBIQUITIN-CONJUGATING
ENZYME E2-16 KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) >gi|101685|pir||S22857 ubiquitin--protein ligase (EC
6.3.2.19) UBC4 - yeast (Saccharomyces cerevisiae)
>gi|5107650|pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
>gi|295933|emb|CAA35528.1| (X17493) ubiquitin conjugating enzyme
[Saccharomyces cerevisiae] >gi|536344|emb|CAA85027.1| (Z35951) ORF
YBR082c [Saccharomyces cerevisiae] >gi|974207|emb|CAA53942.1|
(X76294) identical to UBC4 S.cerevisiae; ORF YBRO45 [Saccharomyces
cerevisiae]
Length = 148
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/103 (39%), Positives = 60/103 (58%), Frame = +2
Query: 86 MSSPSKR--REM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPD 256
MSS SKR +E+ DL + + + D + + GP DSPY GGV+ + + P
Sbjct: 1 MSS-SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPT 59
Query: 257 AYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
YP+K P I F KIYHPN++ +G++CLD++ WSP LS +
Sbjct: 60 DYPFKPPKISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKV 103
>gi|4507793 ref|NP_003339.1| ubiquitin-conjugating enzyme E2N (homologous to
yeast UBC13) [Homo sapiens] >gi|12737571 ref|XP_006823.2|
ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) [Homo
sapiens] >gi|2501432|sp|Q16781|UBCC_HUMAN UBIQUITIN-CONJUGATING
ENZYME E2-17 KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) (UBC13) >gi|2146981|pir||JC4894 ubiquitin--protein ligase
(EC 6.3.2.19) E2N - human >gi|1181558|dbj|BAA11675.1| (D83004)
ubiquitin-conjugating enzyme E2 UbcH-ben [Homo sapiens]
>gi|12653255|gb|AAH00396.1|AAH00396 (BC000396)
ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) [Homo
sapiens]
Length = 152
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 33/79 (41%), Positives = 49/79 (62%), Frame = +2
Query: 146 KVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEM 325
K E + F+V GP DSP+ GG +K+ + LP+ YP +P + F+ KIYHPNVD++
Sbjct: 24 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 83
Query: 326 SGSVCLDVINQTWSPMFDL 382
G +CLD++ WSP +
Sbjct: 84 -GRICLDILKDKWSPALQI 101
>gi|1717856|sp|P52486|UBC4_DROME UBIQUITIN-CONJUGATING ENZYME E2-22 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
Length = 199
Frame 2 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 48..95
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 2..153
DOMO DM05814: 155..198
Entrez binding site: UBIQUITIN (BY SIMILARITY). 92
PFAM UQ_con: Ubiquitin-conjugating enzyme 4..151
PFAM UBA: UBA domain 161..199
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 5..148
PRODOM PD030862: P91633(1) UBC4(1) 150..198
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 80..95
__________________
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 33/104 (31%), Positives = 62/104 (59%), Frame = +2
Query: 83 NMS-SPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVEL 250
NM+ S KR ++M+ ++ K+E++N + E + GP D+PY GG + + +++
Sbjct: 3 NMAVSRIKREFKEVMRSEEIVQCSIKIELVNGQLTELRGEIAGPPDTPYEGGKFVLEIKV 62
Query: 251 PDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDL 382
P+ YP+ P FI +I+HPN+ ++G++CLD++ W+ L
Sbjct: 63 PETYPFNPPKARFITRIWHPNISSVTGAICLDILKDNWAAAMTL 106
>gi|12249089|dbj|BAB20414.1| (AB032739) bendless protein [Rattus norvegicus]
Length = 152
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 33/79 (41%), Positives = 49/79 (62%), Frame = +2
Query: 146 KVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEM 325
K E + F+V GP DSP+ GG +K+ + LP+ YP +P + F+ KIYHPNVD++
Sbjct: 24 KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 83
Query: 326 SGSVCLDVINQTWSPMFDL 382
G +CLD++ WSP +
Sbjct: 84 -GRICLDILKDKWSPALQI 101
>gi|89812|pir||A40797 ubiquitin-conjugating enzyme - bovine
>gi|233966|gb|AAB19536.1| (S51016) E2(25K)=multiubiquitinating
enzyme [cattle, thymus, Peptide, 200 aa] [Bos taurus]
Length = 200
Frame 2 hits (HSPs): _____________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 80..95
__________________
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 27/79 (34%), Positives = 52/79 (65%), Frame = +2
Query: 146 KVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEM 325
KV+++++ E + GP D+PY GG +++ +++P+ YP+ P + FI KI+HPN+ +
Sbjct: 28 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 87
Query: 326 SGSVCLDVINQTWSPMFDL 382
+G++CLD++ W+ L
Sbjct: 88 TGAICLDILKDQWAAAMTL 106
>gi|464986|sp|P35132|UBC9_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 9
(UBIQUITIN-PROTEIN LIGASE 9) (UBIQUITIN CARRIER PROTEIN 9)
(UBCAT4B) >gi|421857|pir||S32674 ubiquitin--protein ligase (EC
6.3.2.19) UBC9 - Arabidopsis thaliana >gi|297884|emb|CAA78714.1|
(Z14990) ubiquitin conjugating enzyme homolog [Arabidopsis
thaliana] >gi|349211|gb|AAA32894.1| (L00639) ubiquitin conjugating
enzyme [Arabidopsis thaliana] >gi|600391|emb|CAA51201.1| (X72626)
ubiquitin conjugating enzyme E2 [Arabidopsis thaliana]
>gi|4455355|emb|CAB36765.1| (AL035524) ubiquitin-protein ligase
UBC9 [Arabidopsis thaliana] >gi|7269650|emb|CAB79598.1| (AL161572)
ubiquitin-protein ligase UBC9 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 37/100 (37%), Positives = 59/100 (59%), Frame = +2
Query: 98 SKR--REM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPY 268
SKR +E+ DL K + + + M + GP+DSPY GGV+ V + P YP+
Sbjct: 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPF 62
Query: 269 KSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
K P + F K++HPN++ +GS+CLD++ + WSP +S +
Sbjct: 63 KPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKV 102
>gi|4885417 ref|NP_005330.1| huntingtin interacting protein 2;
ubiquitin-conjugating enzyme E2-25 KDA; ubiquitin-protein ligase;
ubiquitin carrier protein [Homo sapiens] >gi|11435922
ref|XP_003428.1| huntingtin interacting protein 2 [Homo sapiens]
>gi|2507504|sp|P27924|UBC1_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-25
KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
(HUNTINGTIN INTERACTING PROTEIN) (HIP-2) >gi|1381164|gb|AAC50633.1|
(U58522) huntingtin interacting protein [Homo sapiens]
>gi|4996608|dbj|BAA78555.1| (AB022435) E2 ubiquitin-conjugating
enzyme [Homo sapiens]
Length = 200
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 27/79 (34%), Positives = 52/79 (65%), Frame = +2
Query: 146 KVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEM 325
KV+++++ E + GP D+PY GG +++ +++P+ YP+ P + FI KI+HPN+ +
Sbjct: 28 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 87
Query: 326 SGSVCLDVINQTWSPMFDL 382
+G++CLD++ W+ L
Sbjct: 88 TGAICLDILKDQWAAAMTL 106
>gi|7949049 ref|NP_058066.1| huntingtin interacting protein 2 [Mus musculus]
>gi|2897818|dbj|BAA24927.1| (AB011081) huntingtin interacting
protein-2 [Mus musculus]
Length = 200
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 27/79 (34%), Positives = 52/79 (65%), Frame = +2
Query: 146 KVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEM 325
KV+++++ E + GP D+PY GG +++ +++P+ YP+ P + FI KI+HPN+ +
Sbjct: 28 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 87
Query: 326 SGSVCLDVINQTWSPMFDL 382
+G++CLD++ W+ L
Sbjct: 88 TGAICLDILKDQWAAAMTL 106
>gi|11762186|gb|AAG40371.1|AF325019_1 (AF325019) AT4g27960 [Arabidopsis
thaliana]
Length = 178
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 37/100 (37%), Positives = 59/100 (59%), Frame = +2
Query: 98 SKR--REM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPY 268
SKR +E+ DL K + + + M + GP+DSPY GGV+ V + P YP+
Sbjct: 33 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPF 92
Query: 269 KSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
K P + F K++HPN++ +GS+CLD++ + WSP +S +
Sbjct: 93 KPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKV 132
>gi|12643427|sp|P35134|UBCB_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 11
(UBIQUITIN-PROTEIN LIGASE 11) (UBIQUITIN CARRIER PROTEIN 11)
>gi|12322738|gb|AAG51362.1|AC012562_23 (AC012562) putative
ubiquitin conjugating enzyme; 52410-53412 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 38/100 (38%), Positives = 59/100 (59%), Frame = +2
Query: 98 SKR--REM-DLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPY 268
SKR +E+ DL K S+ + + M + GP +SPY GGV+ V + P YP+
Sbjct: 3 SKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPF 62
Query: 269 KSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLSNL 391
K P + F K+YHPN++ +GS+CLD++ + WSP +S +
Sbjct: 63 KPPKVSFKTKVYHPNINS-NGSICLDILKEQWSPALTISKV 102
>gi|2501431|sp|P70711|UB5D_RAT UBIQUITIN-CONJUGATING ENZYME E2-17 KD 4
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (E2(17)KB 4)
>gi|1515423|gb|AAC52942.1| (U56407) Ubiquitin conjugating enzyme
[Rattus norvegicus]
Length = 147
Frame 2 hits (HSPs): ___________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 194 (68.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 31/78 (39%), Positives = 48/78 (61%), Frame = +2
Query: 158 INDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSV 337
+ + M + GPNDSPY GG + + ++ P YP+K P + F +IYHPNV+ +GS+
Sbjct: 26 VGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNS-NGSI 84
Query: 338 CLDVINQTWSPMFDLSNL 391
CLD++ WSP +S +
Sbjct: 85 CLDILRSQWSPALTISKV 102
WARNING: HSPs involving 262 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.358 0.155 0.580
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.322 0.136 0.421
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.152 0.563
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.147 0.553
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.151 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.165 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 136 135 10. 73 3 12 22 0.11 33
30 0.099 36
+2 0 136 135 10. 73 3 12 22 0.11 33
30 0.099 36
+1 0 136 135 10. 73 3 12 22 0.11 33
30 0.099 36
-1 0 136 136 10. 73 3 12 22 0.11 33
30 0.10 36
-2 0 136 135 10. 73 3 12 22 0.11 33
30 0.099 36
-3 0 136 135 10. 73 3 12 22 0.11 33
30 0.099 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 312
No. of states in DFA: 589 (58 KB)
Total size of DFA: 199 KB (256 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 150.07u 1.32s 151.39t Elapsed: 00:00:26
Total cpu time: 150.12u 1.34s 151.46t Elapsed: 00:00:26
Start: Wed Feb 6 12:06:05 2002 End: Wed Feb 6 12:06:31 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000