Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss76391	TSC-CSHL|TSC0019016		rev/B	C/T	ggccgtgagcctgaggtaactcgccacagt	ggacagagcagggtctggacccaggcctgt	09/06/00	10/10/03	92	Genomic			95 %
ss330608	KWOK|OVLP-000621-54065		rev/B	C/T	ggccgtgagcctgaggtaactcgccacagt	ggacagagcagggtctggacccaggcctgt	06/30/00	10/10/03	79	Genomic			99 %
ss792510	SC_JCM|AC012314.5_92285		rev/B	C/T	ggccgtgagcctgaggtaactcgccacagt	ggacagagcagggtctggacccaggcctgt	07/27/00	10/10/03	87	Genomic			unknown
ss888081	KWOK|OVLP-000804-88724		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	09/01/00	10/10/03	86	Genomic			99 %
ss1685849	KWOK|OVLP-000925-286288		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	10/05/00	10/25/06	87	Genomic			99 %
ss5459255	TSC-CSHL|TSC0160775		fwd/T	A/G	gacaggcctggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	09/21/02	10/10/03	108	Genomic			unknown
ss6287733	SC_JCM|NT_011148.11_994560		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	01/10/03	10/10/03	111	Genomic			unknown
ss6634262	WI_SSAHASNP|NT_011225.10_413320		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	02/12/03	10/10/03	111	Genomic			unknown
ss10934670	BCM_SSAHASNP|chr19.NT_011109.15_26897130		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	06/30/03	11/10/03	116	Genomic			unknown
ss19406819	CSHL-HAPMAP|CSHL-HuDD-200402.chr19.NT_011109.15_26897130		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	02/20/04	03/04/04	120	Genomic			unknown
ss20070408	CSHL-HAPMAP|CSHL-HuFF-200402.chr19.NT_011109.15_26897130		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	02/21/04	03/04/04	120	Genomic			unknown
ss21518704	SSAHASNP|WGSA-200403-chr19.chr19.NT_011109.15_26897130		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	03/20/04	03/20/04	121	Genomic			unknown
ss44159709	ABI|hCV2414406		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	07/18/05	07/18/05	126	Genomic			unknown
ss66138628	AFFY|SNP_A-2096431		fwd/T	A/G	agaccctgctctgtcc	actgtggcgagttacc	10/27/06	08/14/07	127	Genomic			unknown
ss76153722	AFFY|AFFY_6_1M_SNP_A-2096431		fwd/T	A/G	agaccctgctctgtcc	actgtggcgagttacc	08/28/07	08/30/07	129	Genomic			unknown
ss83521998	HGSV|Cor18555_SNV_20070510.chr19_59320752		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	11/27/07	12/05/07	130	Genomic			unknown
ss83824437	HGSV|Cor18956_SNV_20070510.chr19_59320752		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	11/30/07	12/05/07	130	Genomic			unknown
ss84342346	HGSV|Cor19240_SNV_20070510.chr19_59320752		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	11/30/07	12/07/07	130	Genomic			unknown
ss91009526	BCMHGSC_JDW|JWB-1182890		fwd/T	A/G	acaggcctgggtccagaccctgctctgtcc	actgtggcgagttacctcaggctcacggcc	02/26/08	03/01/08	129	Genomic			unknown

Fasta sequence   (Legend)

 CAGCCTGAGC AGCCACCCAC CATCTGGCCC AGCTGACGGT AGCACTCAGG AGCTGGGAAC
 AGGGTGGCAT GGGACGTGAG AGCCAGGGCT CTGCAGCAGA ccagctccag cacccaccag
 tcaggtgact gtgggcaaga ggcatgagcg ccctgtgcct cagtctcctc ccctatcaaa
 tgggagcaca gcgcctgctt catgagttgg gacgagggct cagtgcacat gaagcactta
 cagttcaggc ctagctcacg acaagcAGCG TCGGGTTAGC GTGCAACTGC Tccgaagacc
 accctcaggt ttgaccattc actagaaaga ctcacagaat ccaCTGAGGG CTGCACATCA
 GCCATGGGGA GAGACACACA GGAGGGGCAG GAGAGGTCAC CAACCTCGGA GCTTCCCGGG
 TCCTCTCCCT GCAGTCGGGA CACATCACCA TCCCAGCATC GACGCCTGAC AGCACACACA
 CAGGCCCGCT AGCCTggcgg ggcgcagtgg ctcgtgcctg tcatcccagc actttgggag
 gccgaggcgg gcagatcacc tgaggtcagg tgttcgagac cagcctggcc aacatggtga
 aaccccatct ctaccaaaaa tacaaaaaac tagctgggta tagtggcaca cacttataat
 cccagctact tgggaggctg aggcaggaga atcgcttgaa cccaggaggt ggaggttgca
 gtgagctaag atcataccac tgccctccag cctgggtgac agagtgagac tctgtctcaa
 aaaaaaaaaa aaaCAAGACA GGTTCTGGGA CAGACAGGCC TGGGTCCAGA CCCTGCTCTG
 TCC
 R
 ACTGTGGCGA GTTACCTCAG GCTCACGGCC CTGTGCCCTG CCTGGCCTCC CCCAGGGATG
 GGGAGAACAA TAGCACTGAT GGCCAAGGCT GGGCAGGCAC TTCCTGGCCC CACCCCCCAG
 CCCTGTGTGG GGTTTTTTTT GTGGTCTTTT CTGCGACCCT TTAGGTCAGG CACTGCTACT
 GGAACACACC CAGGGAGGCT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_011109->NM_015629 sv function
HuRef	NW_001838498->NM_015629 sv function
Celera	NW_927284->NM_015629 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss1685849	HapMap-CEU	European	120	IG	0.817	0.167	0.017	0.584	0.900	0.100
	HapMap-HCB	Asian	90	IG	0.533	0.378	0.089	0.752	0.722	0.278
	HapMap-JPT	Asian	90	IG	0.489	0.400	0.111		0.689	0.311
	HapMap-YRI	Sub-Saharan African	120	IG	0.383	0.433	0.183	0.479	0.600	0.400
ss66138628	HapMap-CEU	European	118	GF	0.814	0.169	0.017		0.898	0.102
	HapMap-HCB	Asian	90	GF	0.533	0.378	0.089		0.722	0.278
	HapMap-JPT	Asian	90	GF	0.489	0.400	0.111		0.689	0.311
	HapMap-YRI	Sub-Saharan African	120	GF	0.383	0.433	0.183		0.600	0.400

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN