Reference SNP(refSNP) Cluster Report: rs10927058

Reference SNP(refSNP) Cluster Report: rs10927058

refSNP ID: rs10927058
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_005465.3:c.173-10445A>G
NM_181690.1:c.173-10445A>G
NT_004836.17:g.8596419T>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss16390169 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10927058 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss16390169	CSHL-HAPMAP\|CSHL-HuAA-200402.chr1.NT_004836.15_8501994	fwd/B	C/T	cacgccattctcctgcctcagcctcctgag	aactgggattacaggcgcatactaccacgc	02/17/04	03/04/04	120	Genomic	unknown
ss18247296	SC_SNP\|SC-CHR1_NA07340-200402.chr1.NT_004836.15_8501994	fwd/B	C/T	cacgccattctcctgcctcagcctcctgag	aactgggattacaggcgcatactaccacgc	02/20/04	03/04/04	120	Genomic	unknown
ss20485367	SSAHASNP\|WGSA-200403-chr1.chr1.NT_004836.15_8501994	fwd/B	C/T	cacgccattctcctgcctcagcctcctgag	aactgggattacaggcgcatactaccacgc	03/18/04	03/18/04	121	Genomic	unknown
ss41236338	ABI\|hCV31523657	fwd/B	C/T	cacgccattctcctgcctcagcctcctgag	aactgggattacaggcgcatactaccacgc	07/16/05	07/17/05	126	Genomic	unknown
ss88040516	BCMHGSC_JDW\|JWB-0213580	fwd/B	C/T	cacgccattctcctgcctcagcctcctgag	aactgggattacaggcgcatactaccacgc	02/26/08	02/27/08	129	Genomic	unknown

Fasta sequence (Legend)

 TTTAAAAAAa ttttcaattc atgaagtaga tgtgcaggtt tgttacatgg gtgtattgta
 taaagctgag atatgggctt ctagtgaact catcacccaa ataatgaaca tagtactcaa
 taggtagttt tctggtcctt gtcccaccct tctccttttt ggagtccgca gtgtctatta
 tttccatctt tatgtccata tgtaccaatt gcataggtcc cacttagaag taaCTTACAA
 CTTAAATGCC TCGAGATTTC CATCTGTACC AATGAGACAA TTTCTACTCA CGTATCTTCA
 AAGTAGCTTA TCAGTGCATA CATACCACAG TGAAATAAAC AATAAACATA TACAAAGACC
 AAGATGCAGA TTCAAAGTCA Cttttttttt gagatggagc cttgctttgt catccatgat
 ggagtgcagt ggcacaatct cggctcactg caacctctgc ctcctgggct cacgccattc
 tcctgcctca gcctcctgag
 Y
 aactgggatt acaggcgcat actaccacgc ccagctaatt ttttgtattt ttagtagaga
 cggggtttca ccatgttagc caggctggtc tcaaactcct gacctcaggt gatcagcccg
 cctccacttc ccaaagtgct aggattacag gcgtgagcca ctacatccag ccTCAAAGTC
 ACTCTTTAAA GCACTTGTAT TAAATGCTGC TCCTCTTCCC GCTAACTGCC CCATTCCTCT
 CCTTCGTTTT GCTGGTAAAT CACTCAAAAT AATCTACAAG GCTGGCCTTT GTTACCCATG
 CCTTAACCAA TTAGCTAAAT TCTGGTTTCC ACCACTCTAC TGCAGTCTCC TTTTTATCAG
 ATATATTTTC C

GeneView

GeneView via analysis of contig annotation: AKT3 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004836->NM_005465

function

reference

NT_004836->NM_181690

function

HuRef

NW_001838553->NM_005465

function

HuRef

NW_001838553->NM_181690

function

Celera

NW_927572->NM_005465

function

Celera

NW_927572->NM_181690

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004836->NM_005465->NP_005456	8596419	reverse	intron

reference	NT_004836->NM_181690->NP_859029	8596419	reverse	intron

HuRef	NW_001838553->NM_005465->NP_005456	2975245	forward	intron

HuRef	NW_001838553->NM_181690->NP_859029	2975245	forward	intron

Celera	NW_927572->NM_005465->NP_005456	483098	reverse	intron

Celera	NW_927572->NM_181690->NP_859029	483098	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10927058 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838553.2	2975245	214217999	minus	G	alt_assembly_8	HuRef	HuRef	view	500
1	NW_927572.1	483098	217125984	plus	T	alt_assembly_1	Celera	Celera	view	500
1	NT_004836.17	8596419	241905253	plus	T	ref_assembly	reference	reference	view	500

NCBI Resource Links

Submitter-Referenced
GenBank
NT_004836

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL662889.5 NC_000001.9	AC023843.2

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .