Reference SNP(refSNP) Cluster Report: rs2550876

Reference SNP(refSNP) Cluster Report: rs2550876

refSNP ID: rs2550876
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss90437848 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2550876 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss3579785	SC_JCM\|AC009160.5_72342	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	09/24/01	10/10/03	100	Genomic	unknown
ss10810931	BCM_SSAHASNP\|chr16.NT_010498.13_20783897	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	06/30/03	10/10/03	116	Genomic	unknown
ss14264107	BCM_SSAHASNP\|chr16.NT_010498.14_20783892	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	11/05/03	11/22/03	119	Genomic	unknown
ss15442620	SC_SNP\|NT_010498.14_20783892	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	11/14/03	11/22/03	120	Genomic	unknown
ss21372065	SSAHASNP\|WGSA-200403-chr16.chr16.NT_010498.14_20783892	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	03/19/04	03/19/04	121	Genomic	unknown
ss77348050	HGSV\|Cor12156_SNV_20070510.chr16_70619801	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	10/09/07	10/12/07	129	Genomic	unknown
ss84969542	HGSV\|Cor19129_SNV_20070510.chr16_70619801	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	12/06/07	12/08/07	130	Genomic	unknown
ss90437848	BCMHGSC_JDW\|JWB-0963314	fwd/T	A/G	agccaatactttttttagtctgttttcccc	tgaggaaaacatccagtcagaatggcagtc	02/26/08	02/29/08	129	Genomic	unknown

Fasta sequence (Legend)

 ACTTTGGGCT GCAGCCAGAG TGATTGCCAC ATGCATTTCT CTCTTTATCT CCTCTCTCTC
 CTACCATAGG CTCAGTTCTG TATCAGAAAG GGCTGAGGTT CCTACATGCA CCACCTTCCT
 TCAAAGGGGC AGGTACGTCA GGTCACATAC ACTCAAGTGT TTTGAAAGAA TCCATTTCCC
 CACTGACTTT CTGATAGGCT GCTTCTGGGT CAAGTTCTGT AGCCAATACT TTTTTTAGTC
 TGTTTTCCCC
 R
 TGAGGAAAAC ATCCAGTCAG AATGGCAGTC TCAAGGACAA GTGGGGAACT GTGATGTAGC
 GTGGAGACGA TTTGCTTACT TCCATCTTGG AGGCCAAGGG TGTAACTTGG CTACCTCAGT
 AGCTCCTTGG TGGTGCTTAC TCAGTGCCCC TGGGTAGGAA AATCAAGTTG TCAGGACACC
 GAGGATTCAC TCAGCTCTGC TCTCAGCAGC AGATGGGAGG CACGGGCTCC ATCTGGAAGA
 AGACCTTGCT

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2550876 maps exactly once on NCBI human chromosome 16

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
16	NW_926517.1	868550	56376412	plus	G	alt_assembly_1	Celera	Celera	view	200
16	NW_001838325.1	642374	57829080	plus	G	alt_assembly_8	HuRef	HuRef	view	200
16	NT_010498.15	25676499	70619801	plus	A	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_010498 AC009087

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AC009087.4 NC_000016.8	AC009160.5

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .