BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SSA_1996
(180 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125718784|ref|YP_001035917.1| DNA-directed RNA polymeras... 213 3e-54
gi|15900407|ref|NP_345011.1| DNA-directed RNA polymerase su... 195 8e-49
gi|148996889|ref|ZP_01824607.1| DNA-directed RNA polymerase... 194 2e-48
gi|116516666|ref|YP_815949.1| DNA-directed RNA polymerase, ... 192 6e-48
gi|157076015|gb|ABV10698.1| DNA-directed RNA polymerase del... 185 8e-46
gi|146320175|ref|YP_001199886.1| DNA-directed RNA polymeras... 167 3e-40
gi|81177358|ref|ZP_00876191.1| DNA-directed RNA polymerase ... 166 7e-40
gi|22536291|ref|NP_687142.1| DNA-directed RNA polymerase su... 163 4e-39
gi|77407075|ref|ZP_00784079.1| delta subunit RNA polymerase... 162 9e-39
gi|21911169|ref|NP_665437.1| DNA-directed RNA polymerase su... 157 3e-37
gi|116627091|ref|YP_819710.1| DNA-directed RNA polymerase, ... 156 4e-37
gi|50914965|ref|YP_060937.1| DNA-directed RNA polymerase su... 155 7e-37
gi|77409776|ref|ZP_00786429.1| delta subunit RNA polymerase... 155 8e-37
gi|55820231|ref|YP_138673.1| DNA-directed RNA polymerase su... 155 8e-37
gi|19746816|ref|NP_607952.1| DNA-directed RNA polymerase su... 155 8e-37
gi|15675708|ref|NP_269882.1| DNA-directed RNA polymerase su... 155 8e-37
gi|73917883|sp|Q5XA09|RPOE_STRP6 Probable DNA-directed RNA ... 154 2e-36
gi|28895145|ref|NP_801495.1| DNA-directed RNA polymerase su... 153 5e-36
gi|30316220|sp|Q8DWG2|RPOE_STRMU Probable DNA-directed RNA ... 148 2e-34
gi|24378618|ref|NP_720573.1| DNA-directed RNA polymerase su... 128 2e-28
gi|29375722|ref|NP_814876.1| DNA-directed RNA polymerase, d... 112 1e-23
gi|116511429|ref|YP_808645.1| DNA-directed RNA polymerase, ... 100 4e-20
gi|15672616|ref|NP_266790.1| DNA-directed RNA polymerase de... 100 6e-20
gi|116496004|ref|YP_807738.1| DNA-directed RNA polymerase, ... 100 7e-20
gi|77412041|ref|ZP_00788368.1| delta subunit RNA polymerase... 99 1e-19
gi|148543466|ref|YP_001270836.1| DNA-directed RNA polymeras... 97 5e-19
gi|92090097|ref|ZP_01275002.1| DNA-directed RNA polymerase ... 95 2e-18
gi|116628900|ref|YP_814072.1| DNA-directed RNA polymerase, ... 94 2e-18
gi|116333148|ref|YP_794675.1| DNA-directed RNA polymerase, ... 91 4e-17
gi|125623469|ref|YP_001031952.1| DNA-directed RNA polymeras... 89 9e-17
gi|42518308|ref|NP_964238.1| DNA-directed RNA polymerase su... 89 1e-16
gi|90961321|ref|YP_535237.1| DNA-directed RNA polymerase de... 86 1e-15
gi|58336573|ref|YP_193158.1| DNA-directed RNA polymerase su... 84 3e-15
gi|104773507|ref|YP_618487.1| DNA-directed RNA polymerase, ... 83 6e-15
gi|116513502|ref|YP_812408.1| DNA-directed RNA polymerase, ... 82 1e-14
gi|81429243|ref|YP_396244.1| DNA-directed RNA polymerase, d... 80 4e-14
gi|116493300|ref|YP_805035.1| DNA-directed RNA polymerase, ... 78 3e-13
gi|33322915|gb|AAQ07194.1|AF496502_1 DNA-directed RNA polym... 76 8e-13
gi|28377374|ref|NP_784266.1| DNA-directed RNA polymerase su... 74 3e-12
gi|152977525|ref|YP_001377042.1| DNA-directed RNA polymeras... 69 2e-10
gi|149182446|ref|ZP_01860921.1| DNA-directed RNA polymerase... 68 2e-10
gi|47093568|ref|ZP_00231327.1| DNA-directed RNA polymerase,... 68 3e-10
gi|89205889|ref|ZP_01184454.1| DNA-directed RNA polymerase ... 67 3e-10
gi|116873926|ref|YP_850707.1| DNA-directed RNA polymerase, ... 67 5e-10
gi|16804598|ref|NP_466083.1| hypothetical protein lmo2560 [... 67 6e-10
gi|16801766|ref|NP_472034.1| hypothetical protein lin2705 [... 67 6e-10
gi|153198326|ref|ZP_01942414.1| DNA-directed RNA polymerase... 67 7e-10
gi|75763604|ref|ZP_00743301.1| DNA-directed RNA polymerase ... 66 1e-09
gi|47569764|ref|ZP_00240436.1| delta subunit RNA polymerase... 65 1e-09
gi|30023370|ref|NP_835001.1| DNA-directed RNA polymerase de... 64 3e-09
gi|30265363|ref|NP_847740.1| DNA-directed RNA polymerase de... 64 4e-09
gi|52140221|ref|YP_086608.1| DNA-directed RNA polymerase de... 64 4e-09
gi|49480420|ref|YP_039332.1| DNA-directed RNA polymerase de... 64 4e-09
gi|89095584|ref|ZP_01168478.1| RNA polymerase (delta subuni... 64 4e-09
gi|42784515|ref|NP_981762.1| DNA-directed RNA polymerase de... 64 5e-09
gi|77415220|ref|ZP_00791215.1| delta subunit RNA polymerase... 62 2e-08
gi|124521801|ref|ZP_01696640.1| DNA-directed RNA polymerase... 61 3e-08
gi|116617631|ref|YP_818002.1| DNA-directed RNA polymerase, ... 60 8e-08
gi|16080769|ref|NP_391597.1| RNA polymerase (delta subunit)... 57 6e-07
gi|154687831|ref|YP_001422992.1| RpoE [Bacillus amyloliquef... 56 8e-07
gi|15616355|ref|NP_244660.1| DNA-directed RNA polymerase de... 55 2e-06
gi|77412057|ref|ZP_00788384.1| delta subunit RNA polymerase... 54 5e-06
gi|126652583|ref|ZP_01724747.1| RpoE [Bacillus sp. B14905] ... 53 8e-06
>gi|125718784|ref|YP_001035917.1| DNA-directed RNA polymerase delta subunit, putative [Streptococcus
sanguinis SK36]
gi|125498701|gb|ABN45367.1| DNA-directed RNA polymerase delta subunit, putative [Streptococcus
sanguinis SK36]
Length = 181
Score = 213 bits (543), Expect = 3e-54, Method: Composition-based stats.
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN
Sbjct: 2 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 61
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG
Sbjct: 62 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 121
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELN 163
YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELN
Sbjct: 122 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELN 164
>gi|15900407|ref|NP_345011.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
TIGR4]
gi|15902481|ref|NP_358031.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
R6]
gi|111657137|ref|ZP_01407921.1| hypothetical protein SpneT_02001648 [Streptococcus pneumoniae
TIGR4]
gi|54039283|sp|P66718|RPOE_STRR6 Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|54042192|sp|P66717|RPOE_STRPN Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|14971964|gb|AAK74651.1| putative DNA-directed RNA polymerase, delta subunit [Streptococcus
pneumoniae TIGR4]
gi|15458003|gb|AAK99241.1| RNA polymerase (delta subunit) [Streptococcus pneumoniae R6]
Length = 200
Score = 195 bits (496), Expect = 8e-49, Method: Composition-based stats.
Identities = 147/179 (82%), Positives = 163/179 (91%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRDHEM+F+DLVNEIQNYL SNS+IR+ALPLFYTELN DGSFI LGDN
Sbjct: 22 IEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLFYTELNFDGSFISLGDN 81
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWY +DE+DEEIIALEE D+D+ K KKKRVNAFMDGD DAIDY+ DDPEDED
Sbjct: 82 KWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGDSDAIDYNADDPEDEDA 141
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELNEEDDDYSDEDTETEEE 179
YEADPALSYD+ENPDDEKNEVEAYDAEINEIAPDDLGE+V+LNE+DD++SD+D ET EE
Sbjct: 142 YEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNEDDDEFSDDDAETSEE 200
>gi|148996889|ref|ZP_01824607.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP11-BS70]
gi|147757464|gb|EDK64503.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP11-BS70]
Length = 195
Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats.
Identities = 147/179 (82%), Positives = 163/179 (91%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRDHEM+F+DLVNEIQNYL SNS+IR+ALPLFYTELN DGSFI LGDN
Sbjct: 17 IEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLFYTELNFDGSFISLGDN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWY +DE+DEEIIALEE D+D+ K KKKRVNAFMDGD DAIDY+ DDPEDED
Sbjct: 77 KWGLRSWYGVDEIDEEIIALEENDDDEVTPKAKKKRVNAFMDGDSDAIDYNADDPEDEDA 136
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELNEEDDDYSDEDTETEEE 179
YEADPALSYD+ENPDDEKNEVEAYDAEINEIAPDDLGE+V+LNE+DD++SD+D ET EE
Sbjct: 137 YEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNEDDDEFSDDDAETSEE 195
>gi|116516666|ref|YP_815949.1| DNA-directed RNA polymerase, delta subunit, putative [Streptococcus
pneumoniae D39]
gi|148983873|ref|ZP_01817192.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP3-BS71]
gi|148988237|ref|ZP_01819700.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP6-BS73]
gi|148993515|ref|ZP_01823006.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP9-BS68]
gi|149003708|ref|ZP_01828553.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP14-BS69]
gi|149005608|ref|ZP_01829347.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP18-BS74]
gi|149012629|ref|ZP_01833626.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP19-BS75]
gi|149025483|ref|ZP_01836419.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP23-BS72]
gi|116077242|gb|ABJ54962.1| DNA-directed RNA polymerase, delta subunit, putative [Streptococcus
pneumoniae D39]
gi|147758270|gb|EDK65271.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP14-BS69]
gi|147762548|gb|EDK69508.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP18-BS74]
gi|147763434|gb|EDK70371.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP19-BS75]
gi|147924020|gb|EDK75132.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP3-BS71]
gi|147926701|gb|EDK77774.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP6-BS73]
gi|147927884|gb|EDK78905.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP9-BS68]
gi|147929433|gb|EDK80429.1| DNA-directed RNA polymerase subunit delta [Streptococcus pneumoniae
SP23-BS72]
Length = 195
Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats.
Identities = 147/179 (82%), Positives = 163/179 (91%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRDHEM+F+DLVNEIQNYL SNS+IR+ALPLFYTELN DGSFI LGDN
Sbjct: 17 IEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLFYTELNFDGSFISLGDN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWY +DE+DEEIIALEE D+D+ K KKKRVNAFMDGD DAIDY+ DDPEDED
Sbjct: 77 KWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGDSDAIDYNADDPEDEDA 136
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELNEEDDDYSDEDTETEEE 179
YEADPALSYD+ENPDDEKNEVEAYDAEINEIAPDDLGE+V+LNE+DD++SD+D ET EE
Sbjct: 137 YEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNEDDDEFSDDDAETSEE 195
>gi|157076015|gb|ABV10698.1| DNA-directed RNA polymerase delta chain [Streptococcus gordonii
str. Challis substr. CH1]
Length = 195
Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats.
Identities = 159/179 (88%), Positives = 170/179 (94%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRDHEMYFNDLVNEIQ YLEKSNSEIR+ALPLFYTELNVDGSFIPLGDN
Sbjct: 17 IEVARAILELRGRDHEMYFNDLVNEIQTYLEKSNSEIREALPLFYTELNVDGSFIPLGDN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDEVDEEIIALEETDE+D PK RKKKRVNAFMDGDEDAIDYSDDDPEDED
Sbjct: 77 KWGLRSWYAIDEVDEEIIALEETDEEDNPKSRKKKRVNAFMDGDEDAIDYSDDDPEDEDS 136
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELNEEDDDYSDEDTETEEE 179
YEADPAL+YD+ENPDDEKNE +AYDAEINEIAPDDL E+V++NEEDD++SD+D E EEE
Sbjct: 137 YEADPALNYDDENPDDEKNEADAYDAEINEIAPDDLDEDVDINEEDDEFSDDDAEGEEE 195
>gi|146320175|ref|YP_001199886.1| DNA-directed RNA polymerase, delta subunit [Streptococcus suis
98HAH33]
gi|145690981|gb|ABP91486.1| DNA-directed RNA polymerase, delta subunit [Streptococcus suis
98HAH33]
Length = 177
Score = 167 bits (422), Expect = 3e-40, Method: Composition-based stats.
Identities = 116/152 (76%), Positives = 131/152 (86%), Gaps = 2/152 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYFNDLVNEIQNYLEKSNSEIR ALP FY++LNVDGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDNEMYFNDLVNEIQNYLEKSNSEIRAALPTFYSDLNVDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEE+I LEE DED KRKKKRVNAFMDGD+DAIDY DDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEVITLEEDDED--APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDN 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIA 152
Y + YD+ENPDDEK+EVE+YD + +++
Sbjct: 135 YPGSVSSEYDDENPDDEKDEVESYDQKSTKLS 166
>gi|81177358|ref|ZP_00876191.1| DNA-directed RNA polymerase delta subunit [Streptococcus suis
89/1591]
gi|146317990|ref|YP_001197702.1| DNA-directed RNA polymerase, delta subunit [Streptococcus suis
05ZYH33]
gi|80975967|gb|EAP39643.1| DNA-directed RNA polymerase delta subunit [Streptococcus suis
89/1591]
gi|145688796|gb|ABP89302.1| DNA-directed RNA polymerase, delta subunit [Streptococcus suis
05ZYH33]
Length = 193
Score = 166 bits (419), Expect = 7e-40, Method: Composition-based stats.
Identities = 122/153 (79%), Positives = 134/153 (87%), Gaps = 2/153 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYFNDLVNEIQNYLEKSNSEIR ALP FY++LNVDGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDNEMYFNDLVNEIQNYLEKSNSEIRAALPTFYSDLNVDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEE+I LEE DED KRKKKRVNAFMDGD+DAIDY DDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEVITLEEDDED--APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDN 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAP 153
Y + YD+ENPDDEK+EVE+YD+EINEI P
Sbjct: 135 YPGSVSSEYDDENPDDEKDEVESYDSEINEIIP 167
>gi|22536291|ref|NP_687142.1| DNA-directed RNA polymerase subunit delta [Streptococcus agalactiae
2603V/R]
gi|25010180|ref|NP_734575.1| DNA-directed RNA polymerase subunit delta [Streptococcus agalactiae
NEM316]
gi|76787332|ref|YP_328830.1| DNA-directed RNA polymerase subunit delta [Streptococcus agalactiae
A909]
gi|22533113|gb|AAM99014.1|AE014196_10 DNA-directed RNA polymerase, delta subunit, putative [Streptococcus
agalactiae 2603V/R]
gi|23094531|emb|CAD45750.1| Unknown [Streptococcus agalactiae NEM316]
gi|28804772|gb|AAO47004.1| delta subunit RNA polymerase [Streptococcus agalactiae]
gi|76562389|gb|ABA44973.1| DNA-directed RNA polymerase, delta subunit [Streptococcus
agalactiae A909]
Length = 191
Score = 163 bits (412), Expect = 4e-39, Method: Composition-based stats.
Identities = 123/155 (79%), Positives = 139/155 (89%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVN+IQ YL KS+S IR++LP FY++LN DGSFIPLG+N
Sbjct: 17 IEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE DED AP KRKKKRVNAFMDGDEDAIDY+DDDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEIITLEE-DEDGAP-KRKKKRVNAFMDGDEDAIDYNDDDPEDEDF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E P+L YDEENPDDEK+EVE+YD+EINEI PD+
Sbjct: 135 TEETPSLEYDEENPDDEKSEVESYDSEINEIIPDE 169
>gi|77407075|ref|ZP_00784079.1| delta subunit RNA polymerase [Streptococcus agalactiae H36B]
gi|77174317|gb|EAO77182.1| delta subunit RNA polymerase [Streptococcus agalactiae H36B]
Length = 191
Score = 162 bits (409), Expect = 9e-39, Method: Composition-based stats.
Identities = 122/155 (78%), Positives = 138/155 (89%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVN+IQ YL KS+S IR++LP FY++LN DGSFIPLG+N
Sbjct: 17 IEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE DED AP KRKKKRVNAFMDGDEDAIDY+DDDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEIITLEE-DEDGAP-KRKKKRVNAFMDGDEDAIDYNDDDPEDEDF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E P+L YDEE PDDEK+EVE+YD+EINEI PD+
Sbjct: 135 TEETPSLEYDEEKPDDEKSEVESYDSEINEIIPDE 169
>gi|21911169|ref|NP_665437.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
MGAS315]
gi|56807617|ref|ZP_00365518.1| COG3343: DNA-directed RNA polymerase, delta subunit [Streptococcus
pyogenes M49 591]
gi|71904262|ref|YP_281065.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
MGAS6180]
gi|71911424|ref|YP_282974.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
MGAS5005]
gi|94989244|ref|YP_597345.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS9429]
gi|94991188|ref|YP_599288.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS10270]
gi|94993131|ref|YP_601230.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS2096]
gi|94995062|ref|YP_603160.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS10750]
gi|21905380|gb|AAM80240.1| putative DNA-directed RNA polymerase delta subunit [Streptococcus
pyogenes MGAS315]
gi|71803357|gb|AAX72710.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS6180]
gi|71854206|gb|AAZ52229.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS5005]
gi|94542752|gb|ABF32801.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS9429]
gi|94544696|gb|ABF34744.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS10270]
gi|94546639|gb|ABF36686.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS2096]
gi|94548570|gb|ABF38616.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS10750]
Length = 202
Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats.
Identities = 118/155 (76%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 28 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 87
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAFMDGDEDAIDY DDDPEDED
Sbjct: 88 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDF 145
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDEE+PDDEK+EVE+YD+E+NEI P+D
Sbjct: 146 TEESAEVEYDEEDPDDEKSEVESYDSELNEIIPED 180
>gi|116627091|ref|YP_819710.1| DNA-directed RNA polymerase, delta subunit [Streptococcus
thermophilus LMD-9]
gi|116100368|gb|ABJ65514.1| DNA-directed RNA polymerase, delta subunit [Streptococcus
thermophilus LMD-9]
Length = 191
Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats.
Identities = 114/155 (73%), Positives = 131/155 (84%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD EMYFNDLVNEIQNYLEKS+++IR ALP FY++LN DGSFIPLGDN
Sbjct: 17 IEVARAILETRGRDKEMYFNDLVNEIQNYLEKSDADIRSALPFFYSDLNTDGSFIPLGDN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEE+I LE+ DE+ KRK K+VNAFMDGDEDAIDY+DDDPEDE+
Sbjct: 77 KWGLRSWYAIDEIDEEVITLEDIDEN--APKRKNKKVNAFMDGDEDAIDYNDDDPEDENF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
+ L YD +N DDE EVE+YD+E+NEI PDD
Sbjct: 135 TPSSAILEYDNDNEDDENAEVESYDSELNEIIPDD 169
>gi|50914965|ref|YP_060937.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
MGAS10394]
gi|50904039|gb|AAT87754.1| DNA-directed RNA polymerase delta chain [Streptococcus pyogenes
MGAS10394]
Length = 202
Score = 155 bits (393), Expect = 7e-37, Method: Composition-based stats.
Identities = 117/155 (75%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 28 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 87
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAF+DGDEDAIDY DDDPEDED
Sbjct: 88 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFVDGDEDAIDYRDDDPEDEDF 145
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDEE+PDDEK+EVE+YD+E+NEI P+D
Sbjct: 146 TEESAEVEYDEEDPDDEKSEVESYDSELNEIIPED 180
>gi|77409776|ref|ZP_00786429.1| delta subunit RNA polymerase [Streptococcus agalactiae COH1]
gi|77171616|gb|EAO74832.1| delta subunit RNA polymerase [Streptococcus agalactiae COH1]
Length = 176
Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats.
Identities = 129/164 (78%), Positives = 145/164 (88%), Gaps = 3/164 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVN+IQ YL KS+S IR++LP FY++LN DGSFIPLG+N
Sbjct: 2 IEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGEN 61
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE DED AP KRKKKRVNAFMDGDEDAIDY DDDPEDED
Sbjct: 62 KWGLRSWYAIDEIDEEIITLEE-DEDGAP-KRKKKRVNAFMDGDEDAIDYXDDDPEDEDF 119
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPD-DLGEEVELN 163
E P+L YDEENPDDEK+EVE+YD+EINEI PD DL E+VE+N
Sbjct: 120 TEETPSLEYDEENPDDEKSEVESYDSEINEIIPDEDLDEDVEIN 163
>gi|55820231|ref|YP_138673.1| DNA-directed RNA polymerase subunit delta [Streptococcus
thermophilus LMG 18311]
gi|55822122|ref|YP_140563.1| DNA-directed RNA polymerase subunit delta [Streptococcus
thermophilus CNRZ1066]
gi|55736216|gb|AAV59858.1| DNA-directed RNA polymerase delta subunit [Streptococcus
thermophilus LMG 18311]
gi|55738107|gb|AAV61748.1| DNA-directed RNA polymerase delta subunit [Streptococcus
thermophilus CNRZ1066]
Length = 193
Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats.
Identities = 113/155 (72%), Positives = 131/155 (84%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD EMYFNDLVNEIQNYLEKS+++IR +LP FY++LN DGSFIPLGDN
Sbjct: 17 IEVARAILETRGRDKEMYFNDLVNEIQNYLEKSDADIRSSLPFFYSDLNTDGSFIPLGDN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEE+I LE+ DE+ KRK K+VNAFMDGDEDAIDY+DDDPEDE+
Sbjct: 77 KWGLRSWYAIDEIDEEVITLEDIDEN--APKRKNKKVNAFMDGDEDAIDYNDDDPEDENF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
+ L YD +N DDE EVE+YD+E+NEI PDD
Sbjct: 135 TPSSAILEYDNDNEDDENAEVESYDSELNEIIPDD 169
>gi|19746816|ref|NP_607952.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
MGAS8232]
gi|23822077|sp|Q8NZF7|RPOE_STRP8 Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|19749052|gb|AAL98451.1| probable DNA-directed RNA polymerase delta subunit [Streptococcus
pyogenes MGAS8232]
Length = 191
Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats.
Identities = 117/155 (75%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAFMDGDEDAIDY DDDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDE++PDDEK+EVE+YD+E+NEI P+D
Sbjct: 135 TEESAEVEYDEDDPDDEKSEVESYDSELNEIIPED 169
>gi|15675708|ref|NP_269882.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
M1 GAS]
gi|139473119|ref|YP_001127834.1| putative DNA-directed RNA polymerase, delta subunit [Streptococcus
pyogenes str. Manfredo]
gi|54039284|sp|P66720|RPOE_STRP3 Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|54042193|sp|P66719|RPOE_STRP1 Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|13622925|gb|AAK34603.1| putative DNA-directed RNA polymerase (delta subunit) [Streptococcus
pyogenes M1 GAS]
gi|134271365|emb|CAM29585.1| putative DNA-directed RNA polymerase, delta subunit [Streptococcus
pyogenes str. Manfredo]
Length = 191
Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats.
Identities = 118/155 (76%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAFMDGDEDAIDY DDDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDEE+PDDEK+EVE+YD+E+NEI P+D
Sbjct: 135 TEESAEVEYDEEDPDDEKSEVESYDSELNEIIPED 169
>gi|73917883|sp|Q5XA09|RPOE_STRP6 Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
Length = 191
Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats.
Identities = 117/155 (75%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAF+DGDEDAIDY DDDPEDED
Sbjct: 77 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFVDGDEDAIDYRDDDPEDEDF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDEE+PDDEK+EVE+YD+E+NEI P+D
Sbjct: 135 TEESAEVEYDEEDPDDEKSEVESYDSELNEIIPED 169
>gi|28895145|ref|NP_801495.1| DNA-directed RNA polymerase subunit delta [Streptococcus pyogenes
SSI-1]
gi|28810390|dbj|BAC63328.1| putative DNA-directed RNA polymerase, delta subunit [Streptococcus
pyogenes SSI-1]
Length = 176
Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats.
Identities = 118/155 (76%), Positives = 135/155 (87%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVNEIQNYL KS++ IR ALP FYT+LN DGSFIPLG+N
Sbjct: 2 IEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGEN 61
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWYAIDE+DEEII LEE ++D +KRKKKRVNAFMDGDEDAIDY DDDPEDED
Sbjct: 62 KWGLRSWYAIDEIDEEIITLEE--DEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDF 119
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
E + YDEE+PDDEK+EVE+YD+E+NEI P+D
Sbjct: 120 TEESAEVEYDEEDPDDEKSEVESYDSELNEIIPED 154
>gi|30316220|sp|Q8DWG2|RPOE_STRMU Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
Length = 194
Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats.
Identities = 117/155 (75%), Positives = 134/155 (86%), Gaps = 2/155 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD EMYF+DLVN IQ YLEKS+++IR+ALP FY++LN DGSFIPLG+N
Sbjct: 17 IEVARAILEERGRDKEMYFSDLVNAIQVYLEKSDADIREALPFFYSDLNTDGSFIPLGEN 76
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
KWGLRSWY IDE+DEEI+ LEE DED APK K+KRVNAFMDGDEDAIDYSDDDPEDE
Sbjct: 77 KWGLRSWYGIDEIDEEIVTLEE-DEDGAPK-HKRKRVNAFMDGDEDAIDYSDDDPEDESF 134
Query: 121 YEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
A+ YDEE+PDDEK+EVE+YD+EINEI PD+
Sbjct: 135 NTAEEDTEYDEEDPDDEKSEVESYDSEINEIIPDE 169
>gi|24378618|ref|NP_720573.1| DNA-directed RNA polymerase subunit delta [Streptococcus mutans
UA159]
gi|24376474|gb|AAN57879.1|AE014861_7 putative DNA-directed RNA polymerase, delta subunit [Streptococcus
mutans UA159]
Length = 162
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 103/139 (74%), Positives = 120/139 (86%), Gaps = 2/139 (1%)
Query: 17 MYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEE 76
MYF+DLVN IQ YLEKS+++IR+ALP FY++LN DGSFIPLG+NKWGLRSWY IDE+DEE
Sbjct: 1 MYFSDLVNAIQVYLEKSDADIREALPFFYSDLNTDGSFIPLGENKWGLRSWYGIDEIDEE 60
Query: 77 IIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDGYEADPALSYDEENPDD 136
I+ LEE DED APK K+KRVNAFMDGDEDAIDYSDDDPEDE A+ YDEE+PDD
Sbjct: 61 IVTLEE-DEDGAPK-HKRKRVNAFMDGDEDAIDYSDDDPEDESFNTAEEDTEYDEEDPDD 118
Query: 137 EKNEVEAYDAEINEIAPDD 155
EK+EVE+YD+EINEI PD+
Sbjct: 119 EKSEVESYDSEINEIIPDE 137
>gi|29375722|ref|NP_814876.1| DNA-directed RNA polymerase, delta subunit, putative [Enterococcus
faecalis V583]
gi|29343183|gb|AAO80946.1| DNA-directed RNA polymerase, delta subunit, putative [Enterococcus
faecalis V583]
Length = 208
Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats.
Identities = 89/172 (51%), Positives = 121/172 (70%), Gaps = 5/172 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AILE M F+DLVN+IQNYL KS+SEIRD L FYT+LN+DGSFI LGDN
Sbjct: 20 IEVAHAILEQHA--DVMDFSDLVNQIQNYLGKSDSEIRDQLAQFYTDLNIDGSFISLGDN 77
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDG--DEDAIDYSDDDPEDE 118
+WGLRSWY ID +DEE+ E DE+DAP++RK+K+VNAF+ DED IDY+DDDPED
Sbjct: 78 RWGLRSWYPIDSIDEEVTHGLEEDEEDAPRRRKRKKVNAFITNPNDEDVIDYNDDDPEDA 137
Query: 119 DGYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDLGEEVELNEEDDDYS 170
+ D ++ +DE E++AY++++ EI D +E ++ + ++D +
Sbjct: 138 E-LTNDDEEDILYDDEEDEDEEIKAYNSDLQEIGADSDDDEEDIPQIEEDLT 188
>gi|116511429|ref|YP_808645.1| DNA-directed RNA polymerase, delta subunit [Lactococcus lactis
subsp. cremoris SK11]
gi|116107083|gb|ABJ72223.1| DNA-directed RNA polymerase, delta subunit [Lactococcus lactis
subsp. cremoris SK11]
Length = 187
Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 110/157 (70%), Gaps = 8/157 (5%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA A+LE G+ EM F++++ IQ+YLEKS+ EI+ ++ FYTE+N DGSFIPLG+N
Sbjct: 17 IEVAHALLEQNGK--EMQFSEIIRAIQDYLEKSDDEIKASISSFYTEINTDGSFIPLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPK-KRKKKRVNAFMDGDEDAIDYSDDDPEDED 119
W LRSWYAIDE+DEE+IAL+E ++++ K +K+K+VNAF D D + E+
Sbjct: 75 VWALRSWYAIDEIDEEVIALDEIEDEEEEKPAKKRKKVNAF-----GIEDEIDPEDEEGT 129
Query: 120 GYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDDL 156
+ +SYD + D++K++V AYDAE+ E+ D++
Sbjct: 130 KETTEEDMSYDTQAEDEDKDDVAAYDAELAEVELDNV 166
>gi|15672616|ref|NP_266790.1| DNA-directed RNA polymerase delta chain [Lactococcus lactis subsp.
lactis Il1403]
gi|13959471|sp|Q9CHT4|RPOE_LACLA Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|12723537|gb|AAK04732.1|AE006296_6 DNA-directed RNA polymerase delta chain (EC 2.7.7.6) [Lactococcus
lactis subsp. lactis Il1403]
Length = 187
Score = 99.8 bits (247), Expect = 6e-20, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 109/156 (69%), Gaps = 8/156 (5%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA A+LE G+ EM F++++ IQ+YLEKS+ EI+ ++ FYTE+N DGSFIPLG+N
Sbjct: 17 IEVAHALLEQNGK--EMQFSEIIRAIQDYLEKSDDEIKASISRFYTEINTDGSFIPLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPK-KRKKKRVNAFMDGDEDAIDYSDDDPEDED 119
W LRSWYAIDE+DEE+IAL+E ++++ K +K+K+VNAF D D + E+
Sbjct: 75 IWALRSWYAIDEIDEEVIALDEIEDEEEEKPAKKRKKVNAF-----GIEDEIDPEDEEGT 129
Query: 120 GYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
+ +SYD + D++K++V AYDAE+ E+ D+
Sbjct: 130 KETTEEDMSYDTQAEDEDKDDVAAYDAELAEVELDN 165
>gi|116496004|ref|YP_807738.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus casei
ATCC 334]
gi|116106154|gb|ABJ71296.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus casei
ATCC 334]
Length = 223
Score = 99.8 bits (247), Expect = 7e-20, Method: Composition-based stats.
Identities = 61/101 (60%), Positives = 76/101 (75%), Gaps = 4/101 (3%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA IL+ +G M F DL NEIQNYL K + EIR+ LP FYT+LNVDGSFI LGDN
Sbjct: 17 IEVAHEILKEKG--DTMAFVDLANEIQNYLGKRDEEIRERLPQFYTDLNVDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
WGLR+WY D VDEE+ E DE++AP+++K+K+VNAF+
Sbjct: 75 VWGLRAWYPYDSVDEEVNHPE--DEEEAPRRKKRKKVNAFL 113
>gi|77412041|ref|ZP_00788368.1| delta subunit RNA polymerase [Streptococcus agalactiae CJB111]
gi|77161898|gb|EAO72882.1| delta subunit RNA polymerase [Streptococcus agalactiae CJB111]
Length = 140
Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/60 (75%), Positives = 54/60 (90%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE RGRD+EMYF+DLVN+IQ YL KS+S IR++LP FY++LN DGSFIPLG+N
Sbjct: 17 IEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGEN 76
>gi|148543466|ref|YP_001270836.1| DNA-directed RNA polymerase delta subunit [Lactobacillus reuteri
F275]
gi|148530500|gb|ABQ82499.1| DNA-directed RNA polymerase delta subunit [Lactobacillus reuteri
F275]
Length = 185
Score = 96.7 bits (239), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AIL G+ M F DL NE+Q YL KS+ EIR+ L FYT+LNVDGSFI LGDN
Sbjct: 17 IEVAHAILAHHGK--AMAFVDLTNEVQQYLGKSDEEIRERLAQFYTDLNVDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
WGLR+WY + +DE + E DE+D K+K+++VNAF+
Sbjct: 75 TWGLRAWYPFESIDEATVGENEEDEEDDRPKKKRRKVNAFL 115
>gi|92090097|ref|ZP_01275002.1| DNA-directed RNA polymerase delta subunit [Lactobacillus reuteri
100-23]
gi|91803141|gb|EAS88035.1| DNA-directed RNA polymerase delta subunit [Lactobacillus reuteri
100-23]
Length = 188
Score = 94.7 bits (234), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AIL G M F DL NE+Q YL KS+ EIR+ L FYT+LNVDGSFI LGDN
Sbjct: 17 IEVAHAILAHHGE--AMAFVDLTNEVQQYLGKSDEEIRERLAQFYTDLNVDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
WGLR+WY + +DE + E DE+D K+K+++VNAF+
Sbjct: 75 TWGLRAWYPFESIDEATVGENEEDEEDDRPKKKRRKVNAFL 115
>gi|116628900|ref|YP_814072.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus gasseri
ATCC 33323]
gi|116094482|gb|ABJ59634.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus gasseri
ATCC 33323]
Length = 186
Score = 94.4 bits (233), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAIL+ G+ M F D+VN +QN+L KS+ EIR+ LP FYT++N DG FI +GDN
Sbjct: 23 IEVARAILQDSGK--RMAFADIVNAVQNFLGKSDEEIRERLPQFYTDMNTDGEFISMGDN 80
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
W LRSW+ + VDEE+ E DEDD P+K+ K+VNAF+
Sbjct: 81 VWALRSWFPYESVDEEVNHPE--DEDDVPRKKHHKKVNAFI 119
>gi|116333148|ref|YP_794675.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus brevis
ATCC 367]
gi|116098495|gb|ABJ63644.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus brevis
ATCC 367]
Length = 222
Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 4/101 (3%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AIL G M F DL N +Q+YL S+ EIRD L FYT+LNVDGSFI LGDN
Sbjct: 17 IEVAHAILSQHG--DVMGFADLANAVQSYLGDSDEEIRDRLSQFYTDLNVDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
WGLR+WY + +DE + EE ++D PK++K+K+VNAF+
Sbjct: 75 LWGLRTWYPFESIDEATVHAEE--DEDQPKRKKRKKVNAFL 113
>gi|125623469|ref|YP_001031952.1| DNA-directed RNA polymerase delta chain [Lactococcus lactis subsp.
cremoris MG1363]
gi|124492277|emb|CAL97208.1| DNA-directed RNA polymerase delta chain [Lactococcus lactis subsp.
cremoris MG1363]
Length = 188
Score = 89.4 bits (220), Expect = 9e-17, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 108/157 (68%), Gaps = 9/157 (5%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA A+LE G+ EM F++++ IQ+YLEKS+ EI+ ++ FYTE+N DGSFIPLG+N
Sbjct: 17 IEVAHALLEQNGK--EMQFSEIIRAIQDYLEKSDDEIKASISRFYTEINTDGSFIPLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALE--ETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDE 118
W LRSWYAIDE+DEE+IAL+ E +E++ +K+K+VNAF D D + E+
Sbjct: 75 VWALRSWYAIDEIDEEVIALDEIEDEEEEEKPAKKRKKVNAF-----GIEDEIDPEDEEG 129
Query: 119 DGYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
+ +SYD + D++K++V AYDAE+ E+ D+
Sbjct: 130 TKETTEEDMSYDTQAEDEDKDDVAAYDAELAEVELDN 166
>gi|42518308|ref|NP_964238.1| DNA-directed RNA polymerase subunit delta [Lactobacillus johnsonii
NCC 533]
gi|41582592|gb|AAS08204.1| DNA-directed RNA polymerase delta chain [Lactobacillus johnsonii
NCC 533]
Length = 180
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/101 (53%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAIL+ G+ M F D+VN +QN+L KS+ EIR+ LP FYT++N DG FI +G N
Sbjct: 17 IEVARAILQDSGK--RMAFADIVNAVQNFLGKSDEEIRERLPQFYTDMNTDGEFISMGHN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
W LRSW+ + VDEE+ E DE+D P+K+ K+VNAF+
Sbjct: 75 VWALRSWFPYESVDEEVNHPE--DEEDVPRKKHHKKVNAFI 113
>gi|90961321|ref|YP_535237.1| DNA-directed RNA polymerase delta chain [Lactobacillus salivarius
subsp. salivarius UCC118]
gi|90820515|gb|ABD99154.1| DNA-directed RNA polymerase delta chain [Lactobacillus salivarius
subsp. salivarius UCC118]
Length = 196
Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA IL RG M F DL NEIQ YL KS+ EIRD L FYT+LN+DGSFI LGDN
Sbjct: 17 IEVAHEILHQRGE--TMAFADLTNEIQVYLGKSDEEIRDRLAQFYTDLNIDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
WGLRSWY D +DE ++ E+ ++++ P+K K+K+VNAF+
Sbjct: 75 VWGLRSWYPYDSIDEALVHGEDEEDEERPRK-KRKKVNAFL 114
>gi|58336573|ref|YP_193158.1| DNA-directed RNA polymerase subunit delta [Lactobacillus
acidophilus NCFM]
gi|58253890|gb|AAV42127.1| RNA polymerase delta subunit [Lactobacillus acidophilus NCFM]
Length = 184
Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 4/101 (3%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVARAILE G+ M F D+VN +Q YL KS+ EIR+ LP FYT++N DG FI +G+N
Sbjct: 17 IEVARAILEDNGK--RMAFADIVNAVQKYLNKSDEEIRERLPQFYTDMNTDGEFISMGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFM 101
W LRSW+ + VDEE+ E+ +EDD+ K KK VNAF+
Sbjct: 75 VWALRSWFPYESVDEEVNHPEDEEEDDSRKHHKK--VNAFL 113
>gi|104773507|ref|YP_618487.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|103422588|emb|CAI97191.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
Length = 189
Score = 83.2 bits (204), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/117 (51%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AILE RG M F D+VNE+Q YL KS+ EIR LP FYT++N DG FI +G+N
Sbjct: 17 IEVAHAILEDRG--ERMAFADIVNEVQKYLNKSDEEIRQRLPQFYTDMNTDGRFISMGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDE--DAIDYSDDDP 115
W LR+W+ + VDEE+ E+ D D+ ++ K+VNAF+ E D IDY +DDP
Sbjct: 75 VWALRTWFKFEAVDEEVDHPED-DGDEESTRKHHKKVNAFLATTEGDDVIDYENDDP 130
>gi|116513502|ref|YP_812408.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|116092817|gb|ABJ57970.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 189
Score = 82.0 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 5/117 (4%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AILE RG M F D+VNE+Q YL KS+ EIR LP FYT++N DG FI +G+N
Sbjct: 17 IEVAHAILEDRG--ERMAFADIVNEVQKYLNKSDEEIRQRLPQFYTDMNTDGRFISMGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDE--DAIDYSDDDP 115
W LR+W+ + VDEE+ E+ D D+ ++ K+VN F+ E D IDY +DDP
Sbjct: 75 VWALRTWFKFEAVDEEVDHPED-DGDEESTRKHHKKVNTFLATTEGDDVIDYENDDP 130
>gi|81429243|ref|YP_396244.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus sakei
subsp. sakei 23K]
gi|78610886|emb|CAI55938.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus sakei
subsp. sakei 23K]
Length = 202
Score = 80.5 bits (197), Expect = 4e-14, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AILE +G + F DL NE+QNYL KS+ E+R L FYT+LN DGSFI LG+N
Sbjct: 17 IEVAHAILEGKG--DTIAFADLTNEVQNYLGKSDEEVRARLSQFYTDLNEDGSFISLGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
WGLRSWY + VDEE+ E+ +ED KK+++K+VNAF+ D D D +D +
Sbjct: 75 VWGLRSWYPYESVDEEVNHPED-EEDQPTKKKRRKKVNAFLADVADDDDVIDYSDDDPED 133
Query: 121 YEADPALSYD-EENPDDEKNEVEAYDAEINEIA 152
+ D + DD +++ Y A++ I
Sbjct: 134 EDLDVEDDAELVVTDDDSSDDLTEYKADLQSIG 166
>gi|116493300|ref|YP_805035.1| DNA-directed RNA polymerase, delta subunit [Pediococcus pentosaceus
ATCC 25745]
gi|116103450|gb|ABJ68593.1| DNA-directed RNA polymerase, delta subunit [Pediococcus pentosaceus
ATCC 25745]
Length = 178
Score = 77.8 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AIL G M F DL N +Q+YL+K++ E R+ L FYT+LNVDGSFI LG+N
Sbjct: 17 IEVAHAILAKSGE--PMAFVDLANAVQSYLDKTDEEFRNRLSQFYTDLNVDGSFISLGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDY--------SD 112
WGLR+WY + +DE +I E+ DE D P ++K+K+VNAF+ D D D
Sbjct: 75 TWGLRTWYPFESIDEALIHAEDEDE-DRPVRKKRKKVNAFLADAADDDDVIDYDSDDPED 133
Query: 113 DDPEDEDGYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
++ E ED D D N DD + + +++E+ DD
Sbjct: 134 EEVEAEDTTSDDAPAFEDLSNDDDTDVLPDGIEGQLSELNEDD 176
>gi|33322915|gb|AAQ07194.1|AF496502_1 DNA-directed RNA polymerase delta subunit [Lactobacillus
delbrueckii subsp. lactis]
Length = 91
Score = 76.3 bits (186), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AILE RG M F D+VNE+Q YL KS+ EIR LP FYT++N DG FI +G+N
Sbjct: 17 IEVAHAILEDRGE--RMAFADIVNEMQKYLNKSDEEIRQRLPQFYTDINTDGRFISMGEN 74
Query: 61 KWGLRSWYAIDEVDEEI 77
W LR+W+ + VDEE+
Sbjct: 75 VWALRTWFKFEAVDEEV 91
>gi|28377374|ref|NP_784266.1| DNA-directed RNA polymerase subunit delta [Lactobacillus plantarum
WCFS1]
gi|38258546|sp|Q88Z77|RPOE_LACPL Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|28270206|emb|CAD63105.1| DNA-directed RNA polymerase, delta subunit [Lactobacillus plantarum
WCFS1]
Length = 199
Score = 74.3 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 14/172 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEVA AIL G M F DL N +Q+YL KS+ EIR+ L FYT+LN+DGSFI LGDN
Sbjct: 17 IEVAHAILSQHG--DVMAFADLTNAVQSYLGKSDEEIRERLSQFYTDLNIDGSFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMDGDEDAIDYSDDDPEDEDG 120
WGLR+WY + +DE +I ++ +++D PK++K VNAF+ D D D D +D +
Sbjct: 75 MWGLRAWYPFESIDEAVIHTDDDEDEDRPKRKK---VNAFLADAGDDDDVIDYDDDDPED 131
Query: 121 YEADPALSYDEENP--------DDEKNEVEAYDAEINEIAPDDL-GEEVELN 163
+ +++ D+ + D +E PD + G+ ELN
Sbjct: 132 DDNYDDDDDQDDDTDDSASSKYDELAGVDDTDDDVADETLPDGIEGQLSELN 183
>gi|152977525|ref|YP_001377042.1| DNA-directed RNA polymerase delta subunit [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026277|gb|ABS24047.1| DNA-directed RNA polymerase delta subunit [Bacillus cereus subsp.
cytotoxis NVH 391-98]
Length = 169
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 10/97 (10%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEV ++LE + F DLV E+ L S ++ + FYT+LN+DG FI LG+N
Sbjct: 17 IEVVHSVLE--DKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYTDLNIDGRFINLGEN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRV 97
+WGLR+WY +++DEEI+ PK +KK++V
Sbjct: 75 RWGLRTWYPYEQIDEEILP--------QPKAKKKRKV 103
>gi|149182446|ref|ZP_01860921.1| DNA-directed RNA polymerase subunit delta [Bacillus sp. SG-1]
gi|148849839|gb|EDL64014.1| DNA-directed RNA polymerase subunit delta [Bacillus sp. SG-1]
Length = 185
Score = 68.2 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IE+A +L + + FNDL+ EI + L+ S E+R + FYT+LNVDG FI LG+N
Sbjct: 17 IELAHELLTEK--KQAVTFNDLLKEIGDLLKLSKEEVRSRMVQFYTDLNVDGRFIALGEN 74
Query: 61 KWGLRSWYAIDEVDEEII 78
+WG+R+WY +D+++EE +
Sbjct: 75 RWGIRAWYPVDQIEEETV 92
>gi|47093568|ref|ZP_00231327.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 4b H7858]
gi|47018039|gb|EAL08813.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 4b H7858]
Length = 181
Score = 67.8 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
I+VA ILE R + F +LV EIQ +L ++EIR+ L FYT++N+DG+FI LG+N
Sbjct: 20 IDVAHFILEQR--KETILFPELVKEIQAFLGLKDAEIRERLVQFYTDMNIDGNFISLGNN 77
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKK 94
WGLR+WY +D +DEE+ PKK++K
Sbjct: 78 TWGLRAWYPMDAIDEEV------QTQTTPKKKRK 105
>gi|89205889|ref|ZP_01184454.1| DNA-directed RNA polymerase delta subunit [Bacillus
weihenstephanensis KBAB4]
gi|89156115|gb|EAR76118.1| DNA-directed RNA polymerase delta subunit [Bacillus
weihenstephanensis KBAB4]
Length = 175
Score = 67.4 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEV ++L + FN+LV EI L S ++ L FYT+LN+DG FI LG+N
Sbjct: 17 IEVVHSVLG--NKRQATTFNELVQEIAQVLGLSQGQVNTKLAQFYTDLNIDGRFINLGEN 74
Query: 61 KWGLRSWYAIDEVDEEII 78
+WGLRSWY +++DEEI+
Sbjct: 75 RWGLRSWYPYEQIDEEIL 92
>gi|116873926|ref|YP_850707.1| DNA-directed RNA polymerase, delta subunit [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742804|emb|CAK21928.1| rpoE [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 176
Score = 67.0 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
I+VA ILE R + F +LV EIQ +L ++EIR+ L FYT++N+DG+FI LG+N
Sbjct: 17 IDVAHFILEQR--KETILFPELVKEIQAFLGLKDAEIRERLVQFYTDMNIDGNFISLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKK 94
WGLR+WY +D +DEE+ PKK++K
Sbjct: 75 MWGLRAWYPMDAIDEEV------QTQTTPKKKRK 102
>gi|16804598|ref|NP_466083.1| hypothetical protein lmo2560 [Listeria monocytogenes EGD-e]
gi|47097103|ref|ZP_00234672.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 1/2a F6854]
gi|153175830|ref|ZP_01931117.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
FSL N3-165]
gi|153180672|ref|ZP_01933689.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
F6900]
gi|153186283|ref|ZP_01936640.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
J0161]
gi|153192240|ref|ZP_01939260.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
J2818]
gi|21263943|sp|Q8Y494|RPOE_LISMO Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|16412048|emb|CAD00638.1| lmo2560 [Listeria monocytogenes]
gi|47014508|gb|EAL05472.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 1/2a F6854]
gi|126941291|gb|EBA19181.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
J0161]
gi|127764300|gb|EBA24839.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
J2818]
gi|133729043|gb|EBA30741.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
FSL N3-165]
gi|133731805|gb|EBA33503.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
F6900]
Length = 178
Score = 66.6 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
I+VA ILE R + F +LV EIQ +L ++EIR+ L FYT++N+DG+FI LG+N
Sbjct: 17 IDVAHFILEQR--KETILFPELVKEIQAFLGLKDAEIRERLVQFYTDMNIDGNFISLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKK 94
WGLR+WY +D +DEE+ PKK++K
Sbjct: 75 TWGLRAWYPMDAIDEEV------QTQTTPKKKRK 102
>gi|16801766|ref|NP_472034.1| hypothetical protein lin2705 [Listeria innocua Clip11262]
gi|46908731|ref|YP_015120.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 4b F2365]
gi|153168708|ref|ZP_01928485.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
FSL N1-017]
gi|153204156|ref|ZP_01944993.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
HPB2262]
gi|21263949|sp|Q927T3|RPOE_LISIN Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|67461447|sp|Q71WL9|RPOE_LISMF Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|16415241|emb|CAC97931.1| lin2705 [Listeria innocua]
gi|46882003|gb|AAT05297.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
str. 4b F2365]
gi|133726098|gb|EBA27796.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
FSL N1-017]
gi|133734283|gb|EBA35981.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
HPB2262]
Length = 178
Score = 66.6 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
I+VA ILE R + F +LV EIQ +L ++EIR+ L FYT++N+DG+FI LG+N
Sbjct: 17 IDVAHFILEQR--KETILFPELVKEIQAFLGLKDAEIRERLVQFYTDMNIDGNFISLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKK 94
WGLR+WY +D +DEE+ PKK++K
Sbjct: 75 TWGLRAWYPMDAIDEEV------QTQTTPKKKRK 102
>gi|153198326|ref|ZP_01942414.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
10403S]
gi|127632075|gb|EBA21789.1| DNA-directed RNA polymerase, delta subunit [Listeria monocytogenes
10403S]
Length = 178
Score = 66.6 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
I+VA ILE R + F +LV EIQ +L ++EIR+ L FYT++N+DG+FI LG+N
Sbjct: 17 IDVAHFILEQR--KETILFPELVKEIQAFLGLKDAEIRERLVQFYTDMNIDGNFISLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKK 94
WGLR+WY +D +DEE+ PKK++K
Sbjct: 75 TWGLRAWYPMDAIDEEV------QTQTTPKKKRK 102
>gi|75763604|ref|ZP_00743301.1| DNA-directed RNA polymerase delta chain [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488908|gb|EAO52427.1| DNA-directed RNA polymerase delta chain [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 177
Score = 65.9 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEV ++L + FN+LV EI L S ++ L FYT+LN+DG FI LG+N
Sbjct: 17 IEVVHSVLG--DKRQATTFNELVQEIAQVLGLSQEQVNAKLAQFYTDLNIDGRFINLGEN 74
Query: 61 KWGLRSWYAIDEVDEEII 78
+WGLRSWY +++DE I+
Sbjct: 75 RWGLRSWYPYEQIDEXIL 92
>gi|47569764|ref|ZP_00240436.1| delta subunit RNA polymerase [Bacillus cereus G9241]
gi|47553560|gb|EAL11939.1| delta subunit RNA polymerase [Bacillus cereus G9241]
Length = 176
Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEEII 78
FN+LV EI L S ++ L FYT+LN+DG FI LG+N+WGLRSWY +++DEEI+
Sbjct: 33 FNELVQEIAQVLGLSQEQVNAKLAQFYTDLNIDGRFINLGENRWGLRSWYPYEQIDEEIL 92
>gi|30023370|ref|NP_835001.1| DNA-directed RNA polymerase delta subunit [Bacillus cereus ATCC
14579]
gi|29898931|gb|AAP12202.1| DNA-directed RNA polymerase delta chain [Bacillus cereus ATCC
14579]
Length = 177
Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEV ++L + FN+LV EI L S ++ + FYT+LN+DG FI LG+N
Sbjct: 17 IEVVHSVLG--DKKQATTFNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGEN 74
Query: 61 KWGLRSWYAIDEVDEEII 78
+WGLRSWY +++DEEI+
Sbjct: 75 RWGLRSWYPYEQIDEEIL 92
>gi|30265363|ref|NP_847740.1| DNA-directed RNA polymerase delta subunit [Bacillus anthracis
str. Ames]
gi|47530905|ref|YP_022254.1| DNA-directed RNA polymerase delta subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49188174|ref|YP_031427.1| DNA-directed RNA polymerase delta subunit [Bacillus anthracis
str. Sterne]
gi|65317317|ref|ZP_00390276.1| COG3343: DNA-directed RNA polymerase, delta subunit [Bacillus
anthracis str. A2012]
gi|30260041|gb|AAP29226.1| DNA-directed RNA polymerase, delta subunit [Bacillus anthracis
str. Ames]
gi|47506053|gb|AAT34729.1| DNA-directed RNA polymerase, delta subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49182101|gb|AAT57477.1| DNA-directed RNA polymerase, delta subunit [Bacillus anthracis
str. Sterne]
Length = 175
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEEII 78
FN+LV EI L S ++ + FYT+LN+DG FI LG+N+WGLRSWY +++DEEI+
Sbjct: 33 FNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGENRWGLRSWYPYEQIDEEIL 92
>gi|52140221|ref|YP_086608.1| DNA-directed RNA polymerase delta subunit [Bacillus cereus E33L]
gi|118480373|ref|YP_897524.1| DNA-directed RNA polymerase, delta subunit [Bacillus
thuringiensis str. Al Hakam]
gi|51973690|gb|AAU15240.1| DNA-directed RNA polymerase, delta subunit [Bacillus cereus E33L]
gi|118419598|gb|ABK88017.1| DNA-directed RNA polymerase, delta subunit [Bacillus
thuringiensis str. Al Hakam]
Length = 176
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEEII 78
FN+LV EI L S ++ + FYT+LN+DG FI LG+N+WGLRSWY +++DEEI+
Sbjct: 33 FNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGENRWGLRSWYPYEQIDEEIL 92
>gi|49480420|ref|YP_039332.1| DNA-directed RNA polymerase delta subunit [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49331976|gb|AAT62622.1| DNA-directed RNA polymerase, delta subunit [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 176
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEEII 78
FN+LV EI L S ++ + FYT+LN+DG FI LG+N+WGLRSWY +++DEEI+
Sbjct: 33 FNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGENRWGLRSWYPYEQIDEEIL 92
>gi|89095584|ref|ZP_01168478.1| RNA polymerase (delta subunit) [Bacillus sp. NRRL B-14911]
gi|89089330|gb|EAR68437.1| RNA polymerase (delta subunit) [Bacillus sp. NRRL B-14911]
Length = 188
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 49/68 (72%)
Query: 11 RGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAI 70
+G ++ F D++NE + LE S+ EIR + FYT+LN+DG FI +G+N+WGLRSWY +
Sbjct: 25 KGTKQQVSFTDIMNEYKTRLEVSDEEIRSRIAQFYTDLNLDGRFIAMGENRWGLRSWYPV 84
Query: 71 DEVDEEII 78
D ++E+ +
Sbjct: 85 DTMEEDTM 92
>gi|42784515|ref|NP_981762.1| DNA-directed RNA polymerase delta subunit [Bacillus cereus ATCC
10987]
gi|42740447|gb|AAS44370.1| DNA-directed RNA polymerase, delta subunit [Bacillus cereus ATCC
10987]
Length = 177
Score = 63.5 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IEV ++L + FN+LV EI L S ++ + FYT+LN+DG FI LG+N
Sbjct: 17 IEVVHSVLG--DKKQATTFNELVQEIAQVLGLSQEQVNAKIAQFYTDLNIDGRFINLGEN 74
Query: 61 KWGLRSWYAIDEVDEEII 78
+WGLRSWY +++DEEI+
Sbjct: 75 RWGLRSWYPYEQIDEEIL 92
>gi|77415220|ref|ZP_00791215.1| delta subunit RNA polymerase [Streptococcus agalactiae 515]
gi|77158728|gb|EAO70044.1| delta subunit RNA polymerase [Streptococcus agalactiae 515]
Length = 85
Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 93 KKKRVNAFMDGDEDAIDYSDDDPEDEDGYEADPALSYDEENPDDEKNEVEAYDAEINEIA 152
KKKRVNAFMDGDEDAIDY+DDDPEDED E P+L YDEENPDDEK+EVE+YD+EINEI
Sbjct: 1 KKKRVNAFMDGDEDAIDYNDDDPEDEDFTEETPSLEYDEENPDDEKSEVESYDSEINEII 60
Query: 153 PDD 155
PD+
Sbjct: 61 PDE 63
>gi|124521801|ref|ZP_01696640.1| DNA-directed RNA polymerase delta subunit [Bacillus coagulans
36D1]
gi|124496537|gb|EAY44129.1| DNA-directed RNA polymerase delta subunit [Bacillus coagulans
36D1]
Length = 194
Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
IE+A ILE + F DL+ EI L E + FYT+LN+DG FI LGDN
Sbjct: 17 IELAEQILEEK--KQVTSFQDLLAEIGAVLGLPEEETERKMIQFYTDLNIDGRFISLGDN 74
Query: 61 KWGLRSWYAIDEVDEE 76
WGLR+WY +D++DEE
Sbjct: 75 TWGLRAWYPVDQIDEE 90
>gi|116617631|ref|YP_818002.1| DNA-directed RNA polymerase, delta subunit [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096478|gb|ABJ61629.1| DNA-directed RNA polymerase, delta subunit [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 195
Score = 59.7 bits (143), Expect = 8e-08, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 90/156 (57%), Gaps = 11/156 (7%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
+E+A AIL M F+ LV EIQ +LE + L FYT+LN DGSFI LG+N
Sbjct: 17 VEIATAILTEH--KEAMPFSSLVQEIQEFLEVDAETFKSRLSQFYTDLNTDGSFISLGNN 74
Query: 61 KWGLRSWYAIDEVDEEIIALEETDEDDAPKKRKKKRVNAFMD--GDEDAIDYSDDDPEDE 118
+W LR+WY +D +DE I L++ ++ KK KK+VN F D D+D IDY+DDDPEDE
Sbjct: 75 EWALRAWYPVDAIDESIHELDDEEDAPKRKKSAKKKVNVFADNASDDDVIDYNDDDPEDE 134
Query: 119 D-------GYEADPALSYDEENPDDEKNEVEAYDAE 147
D E D + E DDE NE++ D E
Sbjct: 135 DFGTVTDDDTETDDEETEVEVESDDESNEIDLSDDE 170
>gi|16080769|ref|NP_391597.1| RNA polymerase (delta subunit) [Bacillus subtilis subsp. subtilis
str. 168]
gi|133449|sp|P12464|RPOE_BACSU DNA-directed RNA polymerase delta subunit (RNAP delta factor)
gi|143456|gb|AAA22710.1| rpoE protein (ttg start codon)
gi|853761|emb|CAA89869.1| RNA polymerase delta subunit [Bacillus subtilis]
gi|2636253|emb|CAB15744.1| RNA polymerase (delta subunit) [Bacillus subtilis subsp. subtilis
str. 168]
Length = 173
Score = 56.6 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
+E+A + E + + F +L+NEI + L E+ D + FYT+LN+DG F+ L D
Sbjct: 17 VEIAHELFEEHKK--PVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALSDQ 74
Query: 61 KWGLRSWYAIDEVDEE 76
WGLRSWY D++DEE
Sbjct: 75 TWGLRSWYPYDQLDEE 90
>gi|154687831|ref|YP_001422992.1| RpoE [Bacillus amyloliquefaciens FZB42]
gi|154353682|gb|ABS75761.1| RpoE [Bacillus amyloliquefaciens FZB42]
Length = 175
Score = 56.2 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 IEVARAILEARGRDHEMYFNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDN 60
+E+A I + + F +L+NE+ + L + E+ D + FYT+LN+DG FI L D
Sbjct: 17 VEIAHEIFSEHKK--PVPFQELLNEMISLLGVTKEELGDRIAQFYTDLNIDGRFIALSDQ 74
Query: 61 KWGLRSWYAIDEVDEE 76
WGLRSWY D++DEE
Sbjct: 75 TWGLRSWYPYDQLDEE 90
>gi|15616355|ref|NP_244660.1| DNA-directed RNA polymerase delta subunit [Bacillus halodurans
C-125]
gi|13959482|sp|Q9K6D6|RPOE_BACHD Probable DNA-directed RNA polymerase delta subunit (RNAP delta
factor)
gi|10176418|dbj|BAB07512.1| DNA-directed RNA polymerase delta subunit [Bacillus halodurans
C-125]
Length = 164
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEEI 77
+ DL+ ++ S ++ D + YT+LN+DG F+ LGDN+WGLRSWY +++V+EEI
Sbjct: 33 YQDLLKKVAELKGMSEEQMLDRIGYLYTDLNIDGRFVTLGDNRWGLRSWYPLEQVEEEI 91
>gi|77412057|ref|ZP_00788384.1| delta subunit RNA polymerase [Streptococcus agalactiae CJB111]
gi|77161914|gb|EAO72898.1| delta subunit RNA polymerase [Streptococcus agalactiae CJB111]
Length = 77
Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/55 (78%), Positives = 49/55 (89%)
Query: 101 MDGDEDAIDYSDDDPEDEDGYEADPALSYDEENPDDEKNEVEAYDAEINEIAPDD 155
MDGDEDAIDY+DDDPEDED E P+L YDEENPDDEK+EVE+YD+EINEI PD+
Sbjct: 1 MDGDEDAIDYNDDDPEDEDFTEETPSLEYDEENPDDEKSEVESYDSEINEIIPDE 55
>gi|126652583|ref|ZP_01724747.1| RpoE [Bacillus sp. B14905]
gi|126590574|gb|EAZ84691.1| RpoE [Bacillus sp. B14905]
Length = 181
Score = 52.8 bits (125), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 19 FNDLVNEIQNYLEKSNSEIRDALPLFYTELNVDGSFIPLGDNKWGLRSWYAIDEVDEE 76
FNDL+ IQ + S+ EI+ L FYT+LNVDG F+ + WGLR W+ +++++EE
Sbjct: 33 FNDLLKIIQELVGYSDEEIKSRLLQFYTDLNVDGRFLYNQETGWGLREWFKVEQIEEE 90
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.305 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,189,079
Number of Sequences: 5470121
Number of extensions: 38810972
Number of successful extensions: 482663
Number of sequences better than 1.0e-05: 313
Number of HSP's better than 0.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 457287
Number of HSP's gapped (non-prelim): 13532
length of query: 180
length of database: 1,894,087,724
effective HSP length: 124
effective length of query: 56
effective length of database: 1,215,792,720
effective search space: 68084392320
effective search space used: 68084392320
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 125 (52.8 bits)