Reference SNP(refSNP) Cluster Report: rs35167119

Reference SNP(refSNP) Cluster Report: rs35167119

refSNP ID: rs35167119
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_000941.2:c.-4-16689A>C
NT_007933.14:g.800894A>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss42894008 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35167119 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss42894008	ABI\|hCV27158046		fwd/T	A/C	cgtggtgaaaccccatctctacaaaaaaaa	aaaaaaacaaaaaaaccaaaaattagccag	07/18/05	07/18/05	126	Genomic			unknown

Fasta sequence (Legend)

 TGTATTTTTA GTAGAGACGG GGTTTCACCG TGCTAGCCAG GATGGTCTCG ATATCCTGAC
 TTCGTGATCC GCCTGCCTCG GACTCCCAAA GTGCTGGGAT TACAGGCGTG AGCCACCGCA
 TCCGGCCGCT GTTTCTGTTT TCTATATTTT TATTCAAAAT TAATTGAGGC AATCAGCTAG
 GCTTGGTGGC TCATGCCTGC AATCCCAGCA CTTGGGAGGC CAAGGCAGGT GGATCAGTTG
 AGATCGGGAG TTTGACATCA GCCTGGACAA CGTGGTGAAA CCCCATCTCT ACAAAAAAAA
 M
 AAAAAAACAA AAAAACCAAA AATTAGCCAG GCATGTTGGC GGGTGCCTGT AATTCCAGCT
 ACCTGGGAGG CTGAGGCAGG AGAATTGCTT GAACCTGGGA GGCGGAGGTT GCAGTGAGCC
 TAGATTGTGC CACTGTACTC CAGCCTGGGG ACAAGAGCCA GACCCTGTCT CAAAAAAAAA
 AAAAAAAAAA AAAAAAAGAA GGCCGTGTTT GGTGGCTCAC GTCTGTAATC CCAGCACTTT
 GGAAGGCTGA GGGGGTGGAT CACCTGAGGT CAGGAGTTTG AGACCAGCCT GGCCAGCATG

GeneView

GeneView via analysis of contig annotation: POR P450 (cytochrome) oxidoreductase

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_007933->NM_000941

function

HuRef

NW_001839047->NM_000941

function

Celera

NW_923484->NM_000941

function

CRA_TCAGchr7v2

NT_079595->NM_000941

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_007933->NM_000941->NP_000932	800894	forward	intron

HuRef	NW_001839047->NM_000941->NP_000932	465503	forward	intron

Celera	NW_923484->NM_000941->NP_000932	431918	forward	intron

CRA_TCAGchr7v2	NT_079595->NM_000941->NP_000932	800894	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs35167119 maps exactly once on NCBI human chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_923484.1	431918	70435164	plus	A	alt_assembly_1	Celera	Celera	view	300
7	NW_001839047.1	465503	70653363	plus	A	alt_assembly_8	HuRef	HuRef	view	300
7	NT_079595.2	800894	74899682	plus	A	alt_assembly_2	CRA_TCAGchr7v2	CRA_TCAGchr7v2	view	300
7	NT_007933.14	800894	75404554	plus	A	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:
AC005067.2 NC_000007.12

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .