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smart00535: RIBOc 
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Ribonuclease III family;
Links
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Source: Smart
Taxonomy: root
PubMed: 2 links
Protein: Related Protein
Related Structure
Architectures
Representatives
Superfamily: cl00258
Statistics
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PSSM-Id: 47836
View PSSM: smart00535
Aligned: 50 rows
Created: 12-Dec-2003
Updated: 12-Dec-2003
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see PubMed Reference Help
smart00535 is a member of the superfamily cl00258.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1O0W_A        36 ELLFRALCH-----SSYANEqnqag--------rkdvESNEKLEFLGDAVLELFVCEILYKKYPEAE----VGDLARVKS 98
gi 15078855   49 NTYNTAFTS-----RGADDK-----------------NNYEMFEQLGDVSVNKFIVNYMYKRFPQLRnpngVDVVAKLKI 106
gi 15235580  169 TLLYLAFQH-----PSCDRArar-----------hvkNGHSRLWFLGQYVLELALTEFFLQRYPRES----PGPMRERVF 228
gi 1351642   912 DTACQALTS-----AESQLN-----------------FDYDRLEFYGDCFLKLGASITVFLKFPDTQ----EYQLHFNRK 965
gi 27820005   94 SELQRAFTE-----KSFAEReedrrrqlgieesdlqmPHNSDLVEKGQQIARAYVEAFLQHQLPKVP----NEGLQAIAS 164
gi 2950480    63 KVLVQALID-----KTVVQNp---------------qYSNEKLWSIGKVFGDFYVLEYIKCKYPRLP----EEAVHGMQN 118
gi 1350789   114 STLSRCLTCpsaklPDKINNptkgaafv-ntvptnkyLDNHGLNIMGKNLLSYHVTKSIIQKYPRLP----TVVLNAAVN 188
gi 3123277    85 ELILQCLTH-----KSFAHGs---------------kPYNEKLNLLGAQFLKLQTCIHSLKNGSPAEsc-eNGQLSLQFS 143
gi 465503     11 PIVSDAIAA------QRLSP--------------------SALAYFGDAVYELFIRFIFLTPPQRIN------AYHHQVV 58
gi 21431882 1330 CLLLTALTT-----SNAADG-----------------MSLERFETIGDSFLKFATTDYLYHTLLDQH----EGKLSFARS 1383
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1O0W_A        99 AAASEEVLAMVSRKMNLG-----------------------KFLFLGKGEEKTGGR------DRDSILADAFEALLAAIY 149
gi 15078855  107 KYASKNQLQMLSESLDMW-----------------------RFITATYDERTN---------KKKPLLEDTFESFFGA-- 152
gi 15235580  229 ALIGKRYLPKWIKAASLQn---------------------lIFPYDDMDKLIRKER--------EPPVKSVFWALFGAIY 279
gi 1351642   966 KIISNCNLYKVAIDCELP------------------------KYALSTPLEIRHWC-------PYGFQKSTSDKCRYAVL 1014
gi 27820005  165 YLLSTETLAHVSTHLGTK-----------------------DLIQSTEYPPSAES------------QAKSLHAVIGALA 209
gi 2950480   119 GWMGSKALSQLATIWGLEvqrree------------glqesFGKVLAKRADPEMLRkpg-eiYKDEAARRAILAILGGVY 185
gi 1350789   189 AYISEAVLAHIAKYWGIEvettsvlsrylkmepfeftlgrlKFFNNSLNSKDGIELitgknfSETSALAMSVRSIIAAIW 268
gi 3123277   144 NLGTKFAKELTSKNTACTfvkl---------------hnldPFIFWKMRDPIKDGHi----nGETTIFASVLNAFIGAIL 204
gi 465503     59 AHVRAESQARYMDILWPHcta-----------------aelTIFRQGRNAAADGPKrv---pAKIYRQATGFEALLGYLY 118
gi 21431882 1384 KEVSNCNLYRLGKKLGIP-----------------------QLIVANKFDAHDSWL------PPCYIPTCDFKAPNTDDA 1434
                        170       180       190
                 ....*....|....*....|....*....|
1O0W_A       150 LDQG---YEKIKELFEQEFE--FYIEKIMK 174
gi 15078855  153 -----------TEWLIDSFI--EDIALKQG 169
gi 15235580  280 LCFG---MPEVYRVLFEVFGmdPDADECQP 306
gi 1351642  1015 QKLS-------VKRIADMVE--ASIGACLL 1035
gi 27820005  210 SSSG---IERAFIFVRDFIC--TQLNQKDL 234
gi 2950480   186 LHQG---FNDTKKFINDHILs-KQLDPRTM 211
gi 1350789   269 AVTEqkdSQAVYRFIDDHIMs-RKLDITKM 297
gi 3123277   205 STNG---SEKAAKFIQGSLLdkEDLHSLVN 231
gi 465503    119 LTDPq-rLQDVLALLEQHIR--AEVAAAES 145
gi 21431882 1435 EEKD----NEIERILDGQVI--EEKPENKT 1458
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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