R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|465541|sp|P34780|YCX5_ASTLO HYPOTHETICAL 13.3 KD PROTEIN IN RPL23-RPL5
INTERGENIC REGION (ORF105) >gi|481417|pir||S38605 hypothetical
protein 105 (rpl23 3' region) - euglenid (Astasia longa) plastid
>gi|414871|emb|CAA53329.1| (X75653) orf105 [Astasia longa]
Length = 105
Frame 3 hits (HSPs): ______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
__________________
Annotated Domains:
PRODOM PD064585: YCX5_ASTLO 1..104
__________________
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.29, P = 0.25
Identities = 19/47 (40%), Positives = 28/47 (59%), Frame = +3
Query: 24 RERKKISCLIILFACVLFTLFLYL---AFFLANIA*DTMLCFYQLQFNGF 164
R+RKKI +II C L +++ L ++F+ NI + FYQ NGF
Sbjct: 36 RKRKKIIYIIIYIFCFLILMYILLIMDSYFIVNI-----IEFYQKYENGF 80
>gi|6714454|gb|AAF26141.1|AC011620_17 (AC011620) putative 60S ribosomal protein
L22 [Arabidopsis thaliana]
Length = 124
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 124
0 50 100
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 1.4, P = 0.76
Identities = 12/12 (100%), Positives = 12/12 (100%), Frame = +2
Query: 5 FNIAENEGEEED 40
FNIAENEGEEED
Sbjct: 113 FNIAENEGEEED 124
>gi|7505458|pir||T32045 hypothetical protein K07E8.5 - Caenorhabditis elegans
>gi|2315723|gb|AAB66150.1| (AF016678) contains similarity to
seven-transmembrane receptors [Caenorhabditis elegans]
Length = 305
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 5/18 (27%), Positives = 13/18 (72%), Frame = +3
Query: 30 RKKISCLIILFACVLFTL 83
R KI+C++++ C ++ +
Sbjct: 112 RAKITCVVLMLICFIYNI 129
Score = 42 (14.8 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 9/20 (45%), Positives = 12/20 (60%), Frame = +1
Query: 112 ILLEIRCFVFISCNLTVLII 171
I L + F FI CN T L++
Sbjct: 209 ISLILVVFFFIFCNFTALMV 228
>gi|5734551|emb|CAB52777.1| (AJ243656) ORF3 [Methanobacterium
thermoautotrophicum]
Length = 221
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.1, P = 0.95
Identities = 21/59 (35%), Positives = 28/59 (47%), Frame = +3
Query: 6 STLPRMRERKKISCL--IILFACVLFTLFLYLAF-FLANIA*-DTMLCFYQLQFNGFDH 170
S +P M K + + LF V+F +F L +LA IA D L FY + GF H
Sbjct: 32 SMIPDMDHEVKSENVSTVFLFGLVIFLVFYILGLPYLAGIALMDLALIFYLSRHRGFTH 90
>gi|7504981|pir||T33244 hypothetical protein H27D07.4 - Caenorhabditis elegans
>gi|3171258|gb|AAC18402.1| (AF067950) H27D07.4 gene product
[Caenorhabditis elegans]
Length = 663
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 663
0 150 300 450 600
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = +2
Query: 71 FVYPFPIPSFLFGKYCLRY 127
F+ F +P +LFG YC+ Y
Sbjct: 34 FLTAFSLPVYLFGGYCILY 52
Score = 35 (12.3 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 5/11 (45%), Positives = 8/11 (72%), Frame = +3
Query: 138 FYQLQFNGFDH 170
+ Q+ F GF+H
Sbjct: 353 YLQIDFPGFEH 363
>gi|7497661|pir||T31992 hypothetical protein C49D10.3 - Caenorhabditis elegans
>gi|2315614|gb|AAC71178.1| (AF016665) C49D10.3 gene product
[Caenorhabditis elegans]
Length = 324
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | 324
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 12/15 (80%), Frame = +2
Query: 83 FPIPSFLFGKYCLRY 127
F IP ++FG YC+++
Sbjct: 27 FEIPIWIFGAYCIQF 41
Score = 34 (12.0 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 7/16 (43%), Positives = 10/16 (62%), Frame = +1
Query: 124 IRCFVFISCNLTVLII 171
I F+FI C L + I+
Sbjct: 248 IMTFMFIPCVLLLYIV 263
>gi|7332059|gb|AAF60746.1| (AC024804) Hypothetical protein Y51H7BR.3
[Caenorhabditis elegans]
Length = 162
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 162
0 50 100 150
Plus Strand HSPs:
Score = 44 (15.5 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Frame = +3
Query: 36 KISCLIILFACVLFTLFLYL 95
KI CLI L +L +LF+ L
Sbjct: 13 KICCLIFLTLQLLISLFILL 32
Score = 30 (10.6 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 7/20 (35%), Positives = 11/20 (55%), Frame = +1
Query: 112 ILLEIRCFVFISCNLTVLII 171
+LL I F FIS ++ +
Sbjct: 81 LLLTITLFWFISSIFALIFV 100
>gi|77241|pir||S02769 gag 75K protein precursor - Moloney murine leukemia virus
(fragment)
Length = 91
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 7.0, P = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Frame = +3
Query: 6 STLPRMRERKKISCLIILFACVLFTLFLYLA 98
S R R + + C I+L C+ T+FLYL+
Sbjct: 57 SVWDRSRAARLVCCSIVL-CCLCLTVFLYLS 86
>gi|1171810|sp|P24883|NU3M_ASCSU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3
>gi|102584|pir||S26024 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3)
chain 3 - pig roundworm mitochondrion >gi|559498|emb|CAA38173.1|
(X54253) ND3 protein [Ascaris suum]
>gi|5834882|gnl|NCBI_MITO|ND3_10020 NADH dehydrogenase subunit 3
Length = 111
Frame 3 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
__________________
Annotated Domains:
DOMO DM00232: NADHDEHYDROGENASE(UBIQUINONE)CH 1..108
PFAM oxidored_q4: NADH-ubiquinone/plastoquino 33..109
PRODOM PD019171: NU3M(2) 1..33
PRODOM PD007184: NU3M(3) 35..75
PRODOM PD003416: NU3M(2) 77..110
__________________
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 7.3, P = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Frame = +3
Query: 48 LIILFACVLFTLFLYLAFFLANIA*DTMLC--FYQLQFNGFD 167
+++L VLFTL L F++ N + C FY+ + + F+
Sbjct: 1 MLVLVMVVLFTLVLLFVFYIGNFV---LSCKDFYKNKISSFE 39
>gi|3769651|gb|AAC64600.1| (AF091580) olfactory receptor [Rattus norvegicus]
Length = 221
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 10/33 (30%), Positives = 19/33 (57%), Frame = +3
Query: 3 TSTLPRMRERKKISCLIILFACVLFTLFLYLAF 101
++T+P+M + +I FA L +F ++AF
Sbjct: 12 STTVPKMLVNIQTQSKMITFAGCLTQIFFFIAF 44
Score = 31 (10.9 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Frame = +2
Query: 83 FPIPSFLFGKYCLRYDALFLSVAI*RF*SFKNCG 184
FP+ LF + L +S A + +F CG
Sbjct: 146 FPLCGILFSYSQIFSSVLRVSSARGQHKAFSTCG 179
>gi|3769653|gb|AAC64601.1| (AF091581) olfactory receptor [Rattus norvegicus]
Length = 221
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 10/33 (30%), Positives = 19/33 (57%), Frame = +3
Query: 3 TSTLPRMRERKKISCLIILFACVLFTLFLYLAF 101
++T+P+M + +I FA L +F ++AF
Sbjct: 12 STTVPKMLVNIQTQSKMITFAGCLTQIFFFIAF 44
Score = 31 (10.9 bits), Expect = 7.6, Sum P(2) = 1.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Frame = +2
Query: 83 FPIPSFLFGKYCLRYDALFLSVAI*RF*SFKNCG 184
FP+ LF + L +S A + +F CG
Sbjct: 146 FPLCGILFSYSQIFSSVLRVSSARGQHKAFSTCG 179
>gi|122782|sp|P20864|HBP_VICFA POTENTIAL HEME-BINDING PROTEIN
Length = 76
Frame 3 hits (HSPs): __________________________
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 1..17
Entrez metal-binding site: IRON (HEME AXIAL LIG 12
__________________
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 8.9, P = 1.0
Identities = 10/39 (25%), Positives = 24/39 (61%), Frame = +3
Query: 39 ISCLIILFACVLFTLFLYLAF-FLANIA*DTMLCFYQLQ 152
+SCL+ +F +L T+F Y F +L ++ ++ ++ ++
Sbjct: 37 LSCLVSIFPVILDTIFKYSIFRYLNRVSPSLVVIYHSMK 75
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.92
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.352 0.157 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.355 0.166 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.382 0.178 0.704
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.157 0.459
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.341 0.148 0.450
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.362 0.157 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 60 60 10. 57 3 12 22 0.098 30
26 0.10 30
+2 0 61 60 10. 57 3 12 22 0.098 30
26 0.10 30
+1 0 61 60 10. 57 3 12 22 0.098 30
26 0.10 30
-1 0 61 61 10. 57 3 12 22 0.10 30
26 0.10 30
-2 0 61 60 10. 57 3 12 22 0.098 30
26 0.10 30
-3 0 60 60 10. 57 3 12 22 0.098 30
26 0.10 30
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 12
No. of states in DFA: 565 (56 KB)
Total size of DFA: 98 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 74.24u 1.06s 75.30t Elapsed: 00:00:25
Total cpu time: 74.27u 1.10s 75.37t Elapsed: 00:00:26
Start: Wed Feb 14 16:26:00 2001 End: Wed Feb 14 16:26:26 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000