R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|4512653|gb|AAD21708.1| (AC007048) 26S proteasome regulatory subunit S2
[Arabidopsis thaliana]
Length = 893
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 893
0 150 300 450 600 750
Minus Strand HSPs:
Score = 275 (96.8 bits), Expect = 6.8e-22, P = 6.8e-22
Identities = 51/59 (86%), Positives = 55/59 (93%), Frame = -3
Query: 218 FHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
FHSNDN +IAGALLGVGIVNC IKNDCDPA+ALLGDYIDKED+S RIGAIMGLGI+Y G
Sbjct: 438 FHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKEDSSVRIGAIMGLGISYAG 496
>gi|7485895|pir||T04617 hypothetical protein F20O9.150 - Arabidopsis thaliana
>gi|2842489|emb|CAA16886.1| (AL021749) putative protein
[Arabidopsis thaliana] >gi|7269701|emb|CAB79649.1| (AL161572)
putative protein [Arabidopsis thaliana]
Length = 1103
Frame -1 hits (HSPs): _
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1103
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 258 (90.8 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 49/59 (83%), Positives = 51/59 (86%), Frame = -3
Query: 218 FHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
FHSNDN V+AGALLGVGIVNC IKNDCDPA ALL YID ED+S RIGAIMGLGIAY G
Sbjct: 481 FHSNDNPVVAGALLGVGIVNCGIKNDCDPAFALLSGYIDNEDSSVRIGAIMGLGIAYAG 539
Score = 31 (10.9 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 5/13 (38%), Positives = 11/13 (84%), Frame = -1
Query: 40 SQNEQLREKLTGV 2
SQN+Q++ +L+ +
Sbjct: 540 SQNDQIKIRLSPI 552
>gi|4972750|gb|AAD34770.1| (AF132182) unknown [Drosophila melanogaster]
>gi|6434946|gb|AAF08385.1|AF145304_1 (AF145304) 26S proteasome
regulatory complex subunit p97 [Drosophila melanogaster]
Length = 919
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 919
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 187 (65.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 34/58 (58%), Positives = 46/58 (79%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S D+++ +GALL GIVNC I+N+ DPA ALL DYID +++ R+GAI+GLGIAY G
Sbjct: 430 YSTDDNIKSGALLACGIVNCGIRNEVDPAHALLSDYIDNQNSCMRVGAILGLGIAYAG 487
>gi|7328043|emb|CAB82366.1| (AL162014) hypothetical protein [Homo sapiens]
Length = 646
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 28/58 (48%), Positives = 44/58 (75%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++N+CDPA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 444 YSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAG 501
>gi|4506227 ref|NP_002799.1| proteasome (prosome, macropain) 26S subunit,
non-ATPase, 2 >gi|687239|gb|AAA87705.1| (U12596) tumor necrosis
factor type 1 receptor associated protein [Homo sapiens]
Length = 853
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 853
0 150 300 450 600 750
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 28/58 (48%), Positives = 44/58 (75%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++N+CDPA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 376 YSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAG 433
>gi|2134674|pir||S66264 55.11 protein homolog - human (fragment)
>gi|1008089|emb|CAA60167.1| (X86446) 55.11 protein [Homo sapiens]
Length = 900
Frame -3 hits (HSPs): ____
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | | 900
0 150 300 450 600 750
__________________
Annotated Domains:
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 788..809
__________________
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 28/58 (48%), Positives = 44/58 (75%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++N+CDPA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 425 YSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAG 482
>gi|1060888|dbj|BAA11226.1| (D78151) human 26S proteasome subunit p97 [Homo
sapiens]
Length = 908
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | || 908
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 28/58 (48%), Positives = 44/58 (75%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++N+CDPA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 434 YSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAG 491
>gi|6174930|sp|Q13200|PSD2_HUMAN 26S PROTEASOME REGULATORY SUBUNIT S2 (P97)
(TUMOR NECROSIS FACTOR TYPE 1 RECEPTOR ASSOCIATED PROTEIN 2) (55.11
PROTEIN)
Length = 908
Frame -3 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 908
0 150 300 450 600 750 900
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 514..534
Entrez Domain: KEKE MOTIF. 623..641
PFAM PC_rep: Proteasome/cyclosome repeat 409..442
PFAM PC_rep: Proteasome/cyclosome repeat 443..479
PFAM PC_rep: Proteasome/cyclosome repeat 480..514
PFAM PC_rep: Proteasome/cyclosome repeat 517..551
PFAM PC_rep: Proteasome/cyclosome repeat 560..589
PFAM PC_rep: Proteasome/cyclosome repeat 692..723
PFAM PC_rep: Proteasome/cyclosome repeat 724..757
PRODOM PD145265: PSD2_HUMAN 1..46
PRODOM PD011885: 48..356
PRODOM PD005090: PSD1(2) 376..621
PRODOM PD186474: O49456(2) 645..905
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 797..818
__________________
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 28/58 (48%), Positives = 44/58 (75%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++N+CDPA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 434 YSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAG 491
>gi|2499841|sp|P87048|MTS4_SCHPO 26S PROTEASOME REGULATORY SUBUNIT MTS4 (19S
REGULATORY CAP REGION OF 26S PROTEASE SUBUNIT 2)
>gi|2072122|emb|CAA70948.1| (Y09819) 19S regulatory cap region of
26S protease subunit 2 [Schizosaccharomyces pombe]
Length = 887
Frame -3 hits (HSPs): ____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 887
0 150 300 450 600 750
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 509..529
PFAM PC_rep: Proteasome/cyclosome repeat 408..441
PFAM PC_rep: Proteasome/cyclosome repeat 442..478
PFAM PC_rep: Proteasome/cyclosome repeat 479..513
PFAM PC_rep: Proteasome/cyclosome repeat 517..550
PFAM PC_rep: Proteasome/cyclosome repeat 673..704
PFAM PC_rep: Proteasome/cyclosome repeat 705..739
PRODOM PD145266: MTS4_SCHPO 1..47
PRODOM PD011885: 49..349
PRODOM PD005090: PSD1(2) 373..616
PRODOM PD186474: O49456(2) 631..867
__________________
Minus Strand HSPs:
Score = 157 (55.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 26/58 (44%), Positives = 43/58 (74%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S++ + AGALLG+G+ N +++N+ DPAMA+L +Y++ R AI+GLG+AY+G
Sbjct: 433 YSSEENTKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGLGLAYSG 490
>gi|7494399|pir||D71619 PSD2-like 26S proteasomal subunit PFB0260w - malaria
parasite (Plasmodium falciparum) >gi|3845137|gb|AAC71841.1|
(AE001383) PSD2-like 26S proteasomal subunit [Plasmodium
falciparum]
Length = 959
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 959
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 157 (55.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 29/58 (50%), Positives = 42/58 (72%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+D +V AGAL+ G+ +IKN+CDPA ALL ++ID E+ ++GAI+G G AY G
Sbjct: 433 YSSDQYVKAGALMAFGLACTNIKNECDPAYALLSEHIDAENALEKMGAILGFGYAYAG 490
>gi|7508225|pir||T32707 hypothetical protein T22D1.9 - Caenorhabditis elegans
>gi|2736519|gb|AAB94277.1| (AF039052) highly similar to human tumor
necrosis factor type 1 receptor associated protein (GB:U12596)
[Caenorhabditis elegans]
Length = 981
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 981
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 147 (51.7 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 27/63 (42%), Positives = 43/63 (68%), Frame = -3
Query: 209 NDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTGFPE* 30
ND+++ AG LL +GI++ I++ CDPA ALL D++ + + R+G+I+GLG+AY
Sbjct: 424 NDDYIKAGTLLAIGIISSGIQDACDPASALLLDHVQSDRSIMRVGSILGLGLAYANSKRE 483
Query: 29 AVT 21
VT
Sbjct: 484 TVT 486
>gi|7513235|pir||G01586 p67 - human >gi|603225|gb|AAA57339.1| (U18247) p67
[Homo sapiens]
Length = 591
Frame -3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 591
0 150 300 450
Minus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/58 (44%), Positives = 41/58 (70%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
+S+++++ +GALL GIVN ++ C PA+ALL DY+ + R+G+I GLG+AY G
Sbjct: 119 YSSEDYIKSGALLACGIVNSGVRMVC-PALALLSDYVLHNSNTMRLGSIFGLGLAYAG 175
>gi|6321816 ref|NP_011892.1| Subunit of 26S Proteasome (PA700 subunit); Rpn1p
>gi|731642|sp|P38764|HRD2_YEAST 26S PROTEASOME REGULATORY SUBUNIT
HRD2 >gi|626601|pir||S46779 26S proteasome regulatory particle
chain RPN1 - yeast (Saccharomyces cerevisiae)
>gi|500697|gb|AAB68878.1| (U10399) Yhr027cp [Saccharomyces
cerevisiae]
Length = 993
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 993
0 150 300 450 600 750 900
Minus Strand HSPs:
Score = 117 (41.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 25/57 (43%), Positives = 36/57 (63%), Frame = -3
Query: 209 NDNHVIAGALLGVGIVNCSIKN-DCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYTG 42
++ V AGALLG+GI + + + +PA+ LL DY+ DT AI+GLGIA+ G
Sbjct: 443 DEPEVKAGALLGIGISASGVHDGEVEPALLLLQDYVTNPDTKISSAAILGLGIAFAG 499
>gi|3108062|gb|AAC15759.1| (AF060817) 19S cap proteasome S2 subunit [Entamoeba
histolytica]
Length = 843
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 843
0 150 300 450 600 750
Minus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.0041, P = 0.0041
Identities = 24/58 (41%), Positives = 34/58 (58%), Frame = -3
Query: 212 SNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTST-RIGAIMGLGIAYTG 42
S+ +V AGALLG+G +K+D D A L D + E ++ R +I GLG+AY G
Sbjct: 393 SDSMYVRAGALLGIGTCCSGVKSDVDFAQVFLSDKLGAETSAIERKLSIFGLGLAYAG 450
>gi|4680042|gb|AAD27431.1| (AF105857) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 263
Frame 3 hits (HSPs): _____ ______
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 10/28 (35%), Positives = 16/28 (57%), Frame = +3
Query: 126 HCRITVILDTTIHNSNTQ*CTSNDMIII 209
+C T + D+T HN+ + ND II+
Sbjct: 131 YCNSTQLFDSTWHNNGSNNTEGNDTIIL 158
Score = 39 (13.7 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 9/25 (36%), Positives = 11/25 (44%), Frame = +3
Query: 9 VNFSRNCSFWETSICNSQTHNCTNP 83
VNF+ N + S NCT P
Sbjct: 24 VNFTNNAKSIIVQLNESVEINCTRP 48
>gi|7379763|emb|CAB84331.1| (AL162755) hypothetical protein NMA1067 [Neisseria
meningitidis]
Length = 63
Frame -2 hits (HSPs): __________
Frame -3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
Minus Strand HSPs:
Score = 46 (16.2 bits), Expect = 0.32, Sum P(2) = 0.27
Identities = 8/17 (47%), Positives = 13/17 (76%), Frame = -3
Query: 122 LLGDYIDKEDTSTRIGA 72
LLG+Y++ E+ T+I A
Sbjct: 11 LLGEYLEFEENGTKIAA 27
Score = 32 (11.3 bits), Expect = 0.32, Sum P(2) = 0.27
Identities = 6/12 (50%), Positives = 7/12 (58%), Frame = -2
Query: 69 YGFGNCIYWFPR 34
Y GN I WF +
Sbjct: 48 YYAGNRIVWFAK 59
>gi|419514|pir||A43802 cellulase (EC 3.2.1.4) / cellulose
1,4-beta-cellobiosidase (EC 3.2.1.91) - Caldocellum saccharolyticum
(fragments)
Length = 915
Frame -2 hits (HSPs): ___
Frame -3 hits (HSPs): __
Annotated Domains: _ __
__________________________________________________
Database sequence: | | | | | | || 915
0 150 300 450 600 750 900
__________________
Annotated Domains:
PROSITE ACTININ_1: Actinin-type actin-binding do 675..684
PROSITE GLYCOSYL_HYDROL_F5: Glycosyl hydrolases 661..670
PROSITE GLYCOSYL_HYDROL_F10: Glycosyl hydrolases 225..235
__________________
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 15/30 (50%), Positives = 17/30 (56%), Frame = -2
Query: 90 FNK-DWCNYGFGNCIYWFPRMSSYVRN*QV 4
FNK DW NY GN W M+SY N +V
Sbjct: 456 FNKSDWSNYNQGNDWSWLQSMTSYGENEKV 485
Score = 36 (12.7 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 8/21 (38%), Positives = 11/21 (52%), Frame = -3
Query: 182 LLGVGIVNCSIKNDCDPAMAL 120
++GV I + ND D M L
Sbjct: 2 MIGVAIPARCLSNDTDKRMVL 22
>gi|121812|sp|P10474|GUNB_CALSA ENDOGLUCANASE/EXOGLUCANASE B PRECURSOR
[INCLUDES: ENDOGLUCANASE (ENDO-1,4-BETA-GLUCANASE) (CELLULASE)
(CELLOBIOHYDROLASE); EXOGLUCANASE (EXOCELLOBIOHYDROLASE)
(1,4-BETA-CELLOBIOHYDROLASE)] >gi|77446|pir||S02711 cellulase (EC
3.2.1.4) precursor - Caldocellum saccharolyticum
>gi|40646|emb|CAA31936.1| (X13602) celB polypeptide precursor
[Caldicellulosiruptor saccharolyticus]
Length = 1039
Frame -2 hits (HSPs): __
Frame -3 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 1039
0 150 300 450 600 750 900
__________________
Annotated Domains:
BLOCKS BL00591A: Glycosyl hydrolases family 10 76..87
BLOCKS BL00591B: Glycosyl hydrolases family 10 121..132
BLOCKS BL00591C: Glycosyl hydrolases family 10 172..181
BLOCKS BL00591D: Glycosyl hydrolases family 10 211..223
BLOCKS BL00591E: Glycosyl hydrolases family 10 244..255
BLOCKS BL00591F: Glycosyl hydrolases family 10 278..288
BLOCKS BL00591G: Glycosyl hydrolases family 10 331..342
BLOCKS BL00591H: Glycosyl hydrolases family 10 353..369
BLOCKS BL00659A: Glycosyl hydrolases family 5 p 791..795
BLOCKS BL00659B: Glycosyl hydrolases family 5 p 881..897
DOMO DM00347: GLYCOSYLHYDROLASESFAMILY10 43..370
DOMO DM00589: GLYCOSYLHYDROLASESFAMILY9 407..569
DOMO DM01559: GLYCOSYLHYDROLASESFAMILY5 587..999
Entrez Domain: THR/PRO-RICH, TANDEM REPEATS OF 376..416
Entrez Domain: CELLULOSE-BINDING (BY SIMILARITY 417..570
Entrez Domain: THR/PRO-RICH, TANDEM REPEATS OF 571..618
Entrez active site: PROTON DONOR (POTENTIAL). 177
Entrez active site: NUCLEOPHILE (BY SIMILARITY) 285
Entrez active site: BY SIMILARITY. 792
PFAM Glyco_hydro_10: Glycosyl hydrolase famil 83..288
PFAM CBD_3: Cellulose binding domain 424..506
PFAM cellulase: Cellulase (glycosyl hydrolase 634..976
PRINTS 1: Cellulase 10 motif I - 3 121..133
PRINTS 2: Cellulase 10 motif II - 3 169..180
PRINTS 3: Cellulase 10 motif III - 215..226
PRINTS 4: Cellulase 10 motif IV - 3 243..255
PRODOM PD124579: GUNB_CALSA 1..62
PRODOM PD000809: XYNA(20) XYNB(3) O81752(2) 64..291
PRODOM PD017590: XYNA(3) 302..334
PRODOM PD124591: GUNB_CALSA 336..364
PRODOM PD000651: VL2(74) O18758(34) MUC2(10) 366..417
PRODOM PD001947: GUNA(3) O52374(3) MANB(2) 424..505
PRODOM PD149683: GUNA(3) O52374(3) MANB(2) 507..544
PRODOM PD186678: GUNA(2) MANB(2) GUNB(1) 546..568
PRODOM PD000651: VL2(74) O18758(34) MUC2(10) 570..624
PRODOM PD000557: GUNA(7) GUN1(6) GUN(6) 626..935
PRODOM PD007026: 937..998
PRODOM PD041597: GUNB(1) O24820(1) 1000..1038
__________________
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 15/30 (50%), Positives = 17/30 (56%), Frame = -2
Query: 90 FNK-DWCNYGFGNCIYWFPRMSSYVRN*QV 4
FNK DW NY GN W M+SY N +V
Sbjct: 527 FNKSDWSNYNQGNDWSWLQSMTSYGENEKV 556
Score = 36 (12.7 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 8/21 (38%), Positives = 11/21 (52%), Frame = -3
Query: 182 LLGVGIVNCSIKNDCDPAMAL 120
++GV I + ND D M L
Sbjct: 54 MIGVAIPARCLSNDTDKRMVL 74
>gi|7300499|gb|AAF55654.1| (AE003725) CG5237 gene product [Drosophila
melanogaster]
Length = 2932
Frame 2 hits (HSPs): _ __
__________________________________________________
Database sequence: | | | | | | | 2932
0 500 1000 1500 2000 2500
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 1.8, Sum P(2) = 0.83
Identities = 12/43 (27%), Positives = 20/43 (46%), Frame = +2
Query: 92 CLLYLYSHLEVPLQDHSHS*YYNSQFQHPVMHQQ*HDYHYYGS 220
C ++ +H P H H + + + HP H H +H+ GS
Sbjct: 1348 CPVHQSAHTAFPYHTHHHHPHGHHPYPHPHPHH--HPHHHAGS 1388
Score = 47 (16.5 bits), Expect = 1.8, Sum P(2) = 0.83
Identities = 12/33 (36%), Positives = 20/33 (60%), Frame = +2
Query: 8 CQFLT*LLILGNQYMQFPNP*LHQSLLKCLLYL 106
CQ ++ ++++ QY NP H LL+CL+ L
Sbjct: 182 CQSVSSVIMMVLQYSN--NPAHHCQLLECLMTL 212
>gi|1079277|pir||JC4028 activating transcription factor 2 - African clawed frog
>gi|710326|gb|AAA69518.1| (U16158) activating transcription factor
2 [Xenopus laevis]
Length = 486
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: _________________________________________
__________________________________________________
Database sequence: | | | | | 486
0 150 300 450
__________________
Annotated Domains:
Entrez region: leucine zipper motif 37..398
Entrez domain: fos/jun DNA-binding domain homol 329..369
Entrez region: basic 332..364
Entrez binding site: phosphate (Ser) (covalent) 82
Entrez binding site: phosphate (Ser) (covalent) 102
PROSITE BZIP_BASIC: bZIP transcription factors b 339..354
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 362..383
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 369..390
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 9..31
__________________
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 15/56 (26%), Positives = 30/56 (53%), Frame = +1
Query: 31 HSGKPVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
H+ P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 130 HNQVPLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 181
Score = 33 (11.6 bits), Expect = 1.8, Sum P(2) = 0.84
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 53 TPTRFLKNC 61
>gi|1294789|gb|AAA98777.1| (L76261) ND3 [Meloidogyne javanica]
Length = 103
Frame -1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 103
0 20 40 60 80 100
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
Identities = 10/31 (32%), Positives = 20/31 (64%), Frame = -1
Query: 211 VMIIMSLLVHYWVLEL*IVVSRMTVILQWHF 119
+ I +L + YW++ L I+ MT++L+W +
Sbjct: 66 LFIYFNLNLIYWMIFLLIIFIMMTLVLEWKY 96
>gi|284736|pir||A42026 cAMP response element-binding protein 3 - mouse
>gi|243427|gb|AAB21127.1| (S76655) cyclic AMP response element
DNA-binding protein isoform 3, CRE-BP3 [mice, EL4, Peptide, 448 aa]
[Mus sp.]
Length = 448
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: _______
__________________________________________________
Database sequence: | | | | 448
0 150 300
__________________
Annotated Domains:
Entrez domain: fos/jun DNA-binding domain homol 289..329
PROSITE BZIP_BASIC: bZIP transcription factors b 299..314
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 322..343
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 329..350
__________________
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 4.9, Sum P(2) = 0.99
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 94 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 141
Score = 33 (11.6 bits), Expect = 4.9, Sum P(2) = 0.99
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 13 TPTRFLKNC 21
>gi|284734|pir||B42026 cyclic AMP response element DNA-binding protein isoform
1 - mouse >gi|243429|gb|AAB21128.1| (S76657) cyclic AMP response
element DNA-binding protein isoform 1, CRE-BP1 [mice, EL4, Peptide,
456 aa] [Mus sp.]
Length = 456
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: ________
__________________________________________________
Database sequence: | | | || 456
0 150 300 450
__________________
Annotated Domains:
Entrez domain: fos/jun DNA-binding domain homol 297..337
PROSITE BZIP_BASIC: bZIP transcription factors b 307..322
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 330..351
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 337..358
__________________
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 102 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 149
Score = 33 (11.6 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 21 TPTRFLKNC 29
>gi|6920062|sp|Q00969|ATF2_RAT CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-2
(ACTIVATING TRANSCRIPTION FACTOR 2) (CAMP RESPONSE ELEMENT BINDING
PROTEIN CRE-BP1) >gi|1244558|gb|AAA93263.1| (U38938) cAMP response
element binding protein 1 [Rattus norvegicus]
Length = 487
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
__________________
Annotated Domains:
DOMO DM00002: ZINCFINGER,C2H2TYPE,DOMAIN 1..29
DOMO DM03989: CAMPRESPONSEELEMENT-BINDINGPROT 31..167
DOMO DM00107: BZIPTRANSCRIPTIONFACTORSBASICDO 169..305
DOMO DM04956: CAMPRESPONSEELEMENT-BINDINGPROT 307..376
Entrez Zinc finger region: C2H2-TYPE. 7..31
Entrez dna-binding site: BASIC MOTIF. 333..356
Entrez Domain: LEUCINE-ZIPPER. 362..390
Entrez phosphorylation site: (BY MAPK14) (BY SI 51
Entrez phosphorylation site: (BY MAPK14) (BY SI 53
Entrez Splicing variant: MISSING (IN ISOFORM 2) 132..229
PFAM zf-C2H2: Zinc finger, C2H2 type 7..31
PFAM bZIP: bZIP transcription factor 234..298
PRODOM PD005666: ATF2(2) Q62870(2) 1..149
PRODOM PD008219: ATF2(2) 151..230
PRODOM PD000088: AP1(10) FOS(9) CREB(5) 232..296
PRODOM PD008045: ATF2(2) 299..369
PROSITE BZIP_BASIC: bZIP transcription factors b 339..354
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 362..383
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 369..390
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 9..31
__________________
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 134 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 181
Score = 33 (11.6 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 53 TPTRFLKNC 61
>gi|6919842|sp|O93602|ATF2_CHICK CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR
ATF-2 (ACTIVATING TRANSCRIPTION FACTOR 2)
>gi|3757575|emb|CAA76838.1| (Y17724) activating transcription
factor 2 [Gallus gallus]
Length = 487
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Frame = +1
Query: 82 LVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
+V +SL + P + S S +I+Q IP+P+++ +T
Sbjct: 145 IVRPASLQV--PNVLLTSSDSSVIIQQAIPSPTSSTVIT 181
Score = 33 (11.6 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 53 TPTRFLKNC 61
>gi|6919998|sp|P15336|ATF2_HUMAN CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR
ATF-2 (ACTIVATING TRANSCRIPTION FACTOR 2) (CAMP RESPONSE ELEMENT
BINDING PROTEIN CRE-BP1) (HB16)
Length = 487
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
__________________
Annotated Domains:
Entrez Zinc finger region: C2H2-TYPE. 7..31
Entrez dna-binding site: BASIC MOTIF. 333..356
Entrez Domain: LEUCINE-ZIPPER. 362..390
Entrez phosphorylation site: (BY MAPK14). 51
Entrez phosphorylation site: (BY MAPK14). 53
PRODOM PD005666: ATF2(2) Q62870(2) 18..218
PRODOM PD006720: 220..265
PRODOM PD008219: ATF2(2) 267..346
PRODOM PD000088: AP1(10) FOS(9) CREB(5) 348..412
PRODOM PD008045: ATF2(2) 415..485
PROSITE BZIP_BASIC: bZIP transcription factors b 339..354
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 362..383
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 369..390
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 9..31
__________________
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 134 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 181
Score = 33 (11.6 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 53 TPTRFLKNC 61
>gi|6920063|sp|P16951|ATF2_MOUSE CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR
ATF-2 (ACTIVATING TRANSCRIPTION FACTOR 2) (CAMP RESPONSE ELEMENT
BINDING PROTEIN CRE-BP1) (MXBP PROTEIN)
Length = 487
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
Annotated Domains: ______ ___________ ______
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
__________________
Annotated Domains:
Entrez Zinc finger region: C2H2-TYPE. 7..31
Entrez dna-binding site: BASIC MOTIF. 333..356
Entrez Domain: LEUCINE-ZIPPER. 362..390
Entrez phosphorylation site: (BY MAPK14) (BY SI 51
Entrez phosphorylation site: (BY MAPK14) (BY SI 53
Entrez Splicing variant: MSDDKPFLCTAPGCGQRFTNED 1..48
Entrez Splicing variant: MISSING (IN ISOFORM 2) 132..229
PFAM bZIP: bZIP transcription factor 158..222
PROSITE BZIP_BASIC: bZIP transcription factors b 339..354
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 362..383
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 369..390
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 9..31
__________________
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 134 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 181
Score = 33 (11.6 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 53 TPTRFLKNC 61
>gi|4503033 ref|NP_001871.1| cAMP responsive element binding protein 2
>gi|87016|pir||S05380 cAMP response element-binding protein 1 -
human >gi|30215|emb|CAA33886.1| (X15875) cAMP response element
binding protein (AA 1-505) [Homo sapiens]
Length = 505
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 505
0 150 300 450
Plus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.4, Sum P(2) = 1.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Frame = +1
Query: 43 PVYAIPKPIIAPILVEVSSLSI*SPRSAIAGSQSFLILQFTIPTPSNAPAMT 198
P+ +P A +V +SL + P + S S +I+Q +P+P+++ +T
Sbjct: 152 PLAQTAQPTSA--IVRPASLQV--PNVLLTSSDSSVIIQQAVPSPTSSTVIT 199
Score = 33 (11.6 bits), Expect = 6.4, Sum P(2) = 1.0
Identities = 5/9 (55%), Positives = 6/9 (66%), Frame = +3
Query: 3 TPVNFSRNC 29
TP F +NC
Sbjct: 71 TPTRFLKNC 79
>gi|2499536|sp|P77405|CITT_ECOLI CITRATE CARRIER (CITRATE TRANSPORTER)
(CITRATE/SUCCINATE ANTIPORTER) >gi|7428755|pir||B64795 ybdS protein
- Escherichia coli >gi|1778529|gb|AAB40812.1| (U82598) YgjE homolog
[Escherichia coli] >gi|1786829|gb|AAC73713.1| (AE000166) putative a
membrane protein [Escherichia coli] >gi|4062225|dbj|BAA35241.1|
(D90701) Hypothetical 32.2 kd protein in ttdB-rpsU intergenic
region. [Escherichia coli] >gi|4062231|dbj|BAA35250.1| (D90702)
Hypothetical 32.2 kd protein in ttdB-rpsU intergenic region.
[Escherichia coli]
Length = 487
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 11..31
Entrez Transmembrane region: POTENTIAL. 60..80
Entrez Transmembrane region: POTENTIAL. 95..115
Entrez Transmembrane region: POTENTIAL. 138..158
Entrez Transmembrane region: POTENTIAL. 190..210
Entrez Transmembrane region: POTENTIAL. 214..234
Entrez Transmembrane region: POTENTIAL. 237..257
Entrez Transmembrane region: POTENTIAL. 288..308
Entrez Transmembrane region: POTENTIAL. 309..329
Entrez Transmembrane region: POTENTIAL. 345..365
Entrez Transmembrane region: POTENTIAL. 379..399
Entrez Transmembrane region: POTENTIAL. 401..421
Entrez Transmembrane region: POTENTIAL. 424..444
Entrez Transmembrane region: POTENTIAL. 463..483
PFAM Na_sulph_symp: Sodium:sulfate symporter 3..486
PRODOM PD013245: YBHI(2) 1..69
PRODOM PD202801: CITT_ECOLI 71..94
PRODOM PD186516: 96..181
PRODOM PD009430: YBHI(2) 184..289
PRODOM PD000549: ARSB(8) NDC1(4) YBHI(3) 291..419
PRODOM PD016140: YBHI(2) 435..485
__________________
Minus Strand HSPs:
Score = 53 (18.7 bits), Expect = 9.4, Sum P(2) = 1.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Frame = -3
Query: 182 LLGVGIVNCSIKNDCDPAMALLG-DYIDKEDTSTRIGAIMGL 60
+L +GI+ C P + + G Y+ +D R+GAI G+
Sbjct: 429 VLSIGIMGCLTPYATGPGVIIYGCGYVKSKDY-WRLGAIFGV 469
Score = 31 (10.9 bits), Expect = 9.4, Sum P(2) = 1.0
Identities = 5/14 (35%), Positives = 9/14 (64%), Frame = -1
Query: 220 TSIVMIIMSLLVHY 179
T IV++++ HY
Sbjct: 380 TVIVLVLVFYFAHY 393
>gi|7293726|gb|AAF49095.1| (AE003515) Rpn1 gene product [Drosophila
melanogaster]
Length = 609
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | || 609
0 150 300 450 600
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 9.5, P = 1.0
Identities = 12/23 (52%), Positives = 18/23 (78%), Frame = -3
Query: 215 HSNDNHVIAGALLGVGIVNCSIK 147
+S D+++ +GALL GIVNC I+
Sbjct: 430 YSTDDNIKSGALLACGIVNCGIQ 452
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.348 0.146 0.543
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.354 0.158 0.582
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.142 0.438
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.153 0.523
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.385 0.174 0.942
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.336 0.152 0.488
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 72 72 10. 57 3 12 22 0.093 31
27 0.12 31
+2 0 73 72 10. 57 3 12 22 0.093 31
27 0.12 31
+1 0 73 72 10. 57 3 12 22 0.093 31
27 0.12 31
-1 0 73 73 10. 57 3 12 22 0.095 31
27 0.12 31
-2 0 73 72 10. 57 3 12 22 0.093 31
27 0.12 31
-3 0 72 72 10. 57 3 12 22 0.093 31
27 0.12 31
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 30
No. of states in DFA: 584 (58 KB)
Total size of DFA: 138 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 104.08u 0.95s 105.03t Elapsed: 00:00:49
Total cpu time: 104.11u 1.03s 105.14t Elapsed: 00:00:50
Start: Wed Feb 14 19:04:39 2001 End: Wed Feb 14 19:05:29 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000