lin0808
27 hits
180 letters
dme 
179 _ 7301763 (179) KOG1157
cel 
170 _ CE15477 (214) KOG1157
ath 
163 _ At4g02260 (849) KOG1157
ath 152 _ At1g54130 (715) KOG1157
ath 143 _ At3g14050 (709) KOG1157
cel 71 _ CE29497 (1281) KOG0018
cel 69 _ CE00961 (4307) KOG1219
cel 68 _ CE25682 (489) KOG0159
hsa 
67 _ Hs4507193 (2106) KOG0517
hsa 66 _ Hs4506649 (403) KOG0746
cel 66 _ CE05598 (401) KOG0746
sce 
65 _ YPR189w (1432) KOG1127
sce 65 _ YMR089c (825) KOG0731
sce 65 _ YDL058w (1790) KOG0946
dme 65 _ 7301678 (4820) KOG3595
hsa 63 _ Hs4758200 (2871) KOG0516
cel 63 _ CE20657 (313) KOG4223
cel 63 CE09478 (505)
dme 62 _ 7296122 (636) KOG3636
spo 
61 _ SPBC3D6.04c (689) KOG4593
hsa 61 Hs9506625 (865)
hsa 61 _ Hs4826988 (407) KOG0746
hsa 61 _ Hs21389449 (504) KOG0642
cel 61 _ CE29296 (1004) KOG1704
ath 61 At5g20210 (256)
ath 61 _ At2g34970 (730) KOG1461
dme 61 _ 7291057 (4547) KOG1215
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= lin0808
(180 letters)
Database: kyva
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
7301763 74 2e-13
CE15477 70 2e-12
At4g02260 67 1e-11
At1g54130 63 3e-10
At3g14050 60 3e-09
CE29497 32 0.67
CE00961 31 1.1
CE25682 31 1.5
Hs4507193 30 2.0
Hs4506649 30 2.6
CE05598 30 2.6
YPR189w 30 3.3
YMR089c 30 3.3
YDL058w 30 3.3
7301678 30 3.3
Hs4758200 29 5.7
CE20657 29 5.7
CE09478 29 5.7
7296122 28 7.4
SPBC3D6.04c 28 9.7
Hs9506625 28 9.7
Hs4826988 28 9.7
Hs21389449 28 9.7
CE29296 28 9.7
At5g20210 28 9.7
At2g34970 28 9.7
7291057 28 9.7
# >7301763
# Length = 179
#
# Score = 73.6 bits (179), Expect = 2e-13
# Identities = 47/113 (41%), Positives = 65/113 (56%), Gaps = 3/113 (2%)
#
# Query: 13 HSGQVRKITGE-PYFSHPLNVARILR-RAGFREE-VVVAGLLHDAVEDTEMTDADIRATF 69
# H Q RK E PY +H +NV+ IL A +E V++A LLHD VEDT+ + D+ F
# Sbjct: 20 HRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLF 79
#
# Query: 70 GDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSVK 122
# G +V LV T++K+L +ERK IE S K + +ADKLDNL ++
# Sbjct: 80 GPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQ 132
#
#
# >CE15477
# Length = 214
#
# Score = 70.1 bits (170), Expect = 2e-12
# Identities = 52/158 (32%), Positives = 75/158 (46%), Gaps = 16/158 (10%)
#
# Query: 4 KARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDA 63
# KA H Q RK PY +HP+ + A +LHD VEDT+ T
# Sbjct: 63 KATDFAARRHRHQKRKDNATPYINHPI-------------VTLAAAVLHDVVEDTKTTPE 109
#
# Query: 64 DIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSV-- 121
# +I+ FG+EV +V T++K L+ ERK IE S + K + +ADKL NL +
# Sbjct: 110 EIQQEFGNEVFQVVKECTDDKNLAKAERKKLQIENYGKHSHQAKLVHLADKLYNLRDLER 169
#
# Query: 122 KYALSSEGKSVWGYFKRGYELQKWYNEGIKNNMEYGLN 159
# K + + K V YFK E+ +G ++EY L+
# Sbjct: 170 KAPIGWDKKRVNEYFKWSREV-IGEMKGTNESLEYALD 206
#
#
# >At4g02260
# Length = 849
#
# Score = 67.4 bits (163), Expect = 1e-11
# Identities = 44/116 (37%), Positives = 63/116 (53%), Gaps = 4/116 (3%)
#
# Query: 3 EKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTE-MT 61
# +K ++ EAH GQ R+ +GEP+ HP+ VARIL E +VAGLLHD VEDT +T
# Sbjct: 151 QKGLKLAFEAHHGQKRR-SGEPFIIHPVAVARILGELELDWESIVAGLLHDTVEDTNFIT 209
#
# Query: 62 DADIRATFGDEVADLVASHTENKTLSWEERK--AHTIEQVRTGSLEEKALIVADKL 115
# I FG V +V T+ L + K + TI+ V+ L + L + D++
# Sbjct: 210 FEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDVKADDLRQMFLAMTDEV 265
#
#
# >At1g54130
# Length = 715
#
# Score = 63.2 bits (152), Expect = 3e-10
# Identities = 46/126 (36%), Positives = 71/126 (55%), Gaps = 13/126 (10%)
#
# Query: 11 EAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDADIRATFG 70
# +AH GQ+R TG+PY H + A +L G VVVAG+LHD ++D+ M+ I TFG
# Sbjct: 224 KAHRGQMRA-TGDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFG 282
#
# Query: 71 DEVADLVASHTENKTLSWEERK----AHTIEQVRTGSL-----EEKALIV--ADKLDNLT 119
# VADLV ++ LS R+ T+E R ++ + +A+++ AD+L N+
# Sbjct: 283 SGVADLVEGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMM 342
#
# Query: 120 SVKYAL 125
# ++ YAL
# Sbjct: 343 TL-YAL 347
#
#
# >At3g14050
# Length = 709
#
# Score = 59.7 bits (143), Expect = 3e-09
# Identities = 45/127 (35%), Positives = 70/127 (54%), Gaps = 13/127 (10%)
#
# Query: 11 EAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDADIRATFG 70
# +AH GQ+R + +PY H + A +L G VVVAGLLHD ++D+ M+ I FG
# Sbjct: 220 KAHRGQMRA-SRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFG 278
#
# Query: 71 DEVADLVASHTENKTLSWEERK----AHTIEQVRTGSL-----EEKALIV--ADKLDNLT 119
# VADLV ++ LS R+ T+E R ++ + +A+++ AD+L N+
# Sbjct: 279 AGVADLVEGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMK 338
#
# Query: 120 SVKYALS 126
# ++ YALS
# Sbjct: 339 TL-YALS 344
#
#
# >CE29497
# Length = 1281
#
# Score = 32.0 bits (71), Expect = 0.67
# Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
#
# Query: 53 DAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVA 112
# + + + T A + AT E A + A H E+ RKA Q T L++K +A
# Sbjct: 252 EEINAQKKTIASLEATRSKEEAKIAAVHQEH-------RKALREVQKMTRKLDQKETDLA 304
#
# Query: 113 DKLDNLTSVKYALSSEGKSV 132
# +K N+ ++K +++ E K +
# Sbjct: 305 EKQQNMLTLKVSVAHEHKKL 324
#
#
# >CE00961
# Length = 4307
#
# Score = 31.2 bits (69), Expect = 1.1
# Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
#
# Query: 102 GSLEEKALIVADKLD-NLTSVKYALSSEGKSVWGYFKRGYELQKWYNEGIKNN--MEYGL 158
# G E+KA I+ +D N + + S+ V GYEL + G N +EY L
# Sbjct: 3070 GEFEDKATILVTVIDQNDNAPTFEKSTYSMKVMESESIGYELAHFRASGGDQNETIEYYL 3129
#
# Query: 159 NPSDVPSF 166
# PSDV SF
# Sbjct: 3130 KPSDVTSF 3137
#
#
# >CE25682
# Length = 489
#
# Score = 30.8 bits (68), Expect = 1.5
# Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
#
# Query: 115 LDNLTSVKYALSSEGKSVWGYFKRGYELQKWYNEGIKNNMEYG-------LNPSDV 163
# + N+ KYA+ S+ K++ Y + E+ K Y + +K N+ +G +P+DV
# Sbjct: 42 IGNIGYFKYAVKSDAKTIENYNQHLEEMYKKYGKIVKENLGFGRKYVVHIFDPADV 97
#
#
# >Hs4507193
# Length = 2106
#
# Score = 30.4 bits (67), Expect = 2.0
# Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
#
# Query: 51 LHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHT-----IEQVRTGSLE 105
# + D ++ ++ +ADI A GD+V + A+ TL + E K + + Q R LE
# Sbjct: 563 VEDLLQKHKLMEADI-AIQGDKVKAITAA-----TLKFTEGKGYQPCDPQVIQDRMSHLE 616
#
# Query: 106 EKALIVADKLDNLTSVKYALSSEGKSVWGYFKRGYELQKWY--NEGIKNNMEYGLNPSDV 163
# + ++L N+ + + K +W +F E + W E I ++++YG + + V
# Sbjct: 617 Q----CFEELSNMAAGARTQLEQSKRLWKFFWEMDEAESWIKEKEQIYSSLDYGKDLTSV 672
#
#
# >Hs4506649
# Length = 403
#
# Score = 30.0 bits (66), Expect = 2.6
# Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 5/87 (5%)
#
# Query: 77 VASHTENKTLSWEERKAHTIE-QVRTGSLEEKALIVADKLDNLTSVKYAL-SSEGKSVWG 134
# V +HT+ + L ++KAH +E QV G++ EK ++L+ V E V G
# Sbjct: 162 VIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIG 221
#
# Query: 135 YFK-RGYE--LQKWYNEGIKNNMEYGL 158
# K +GY+ +W+ + + GL
# Sbjct: 222 VTKGKGYKGVTSRWHTKKLPRKTHRGL 248
#
#
# >CE05598
# Length = 401
#
# Score = 30.0 bits (66), Expect = 2.6
# Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
#
# Query: 77 VASHTENKTLSWEERKAHTIE-QVRTGSLEEKALIVADKLDNLTSV 121
# V +HT+ K L ++KAH +E QV G++E+K + L+ V
# Sbjct: 162 VIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQV 207
#
#
# >YPR189w
# Length = 1432
#
# Score = 29.6 bits (65), Expect = 3.3
# Identities = 23/101 (22%), Positives = 44/101 (42%), Gaps = 15/101 (14%)
#
# Query: 55 VEDTEMTDAD-IRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVAD 113
# ++D + T+ D ++ DEV D V +++ +E + ++ + G LEE+ + V
# Sbjct: 356 IKDVDETNEDEVKDRVEDEVKDRVEDEVKDQDEEAKEDEEEDLDDIEIGLLEEEVVTVL- 414
#
# Query: 114 KLDNLTSVK------------YALSSEGKSVWGYFKRGYEL 142
# +N+ K Y L+ E ++ Y K G L
# Sbjct: 415 -TENIVKCKNNILAHRILCQYYLLTKEYEAALPYIKNGISL 454
#
#
# >YMR089c
# Length = 825
#
# Score = 29.6 bits (65), Expect = 3.3
# Identities = 25/107 (23%), Positives = 41/107 (37%), Gaps = 10/107 (9%)
#
# Query: 62 DADIRATFGDEVADLVASHTENKTLSWEER-------KAHTIEQVRTGSLEEKALIVADK 114
# D+D+ F DE D++ S +R KA +E++ L+++ L D
# Sbjct: 720 DSDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDM 779
#
# Query: 115 LDNLTSVKYALSSEGKSVWGYFKRGYELQKWYNEGIKNNMEYGLNPS 161
# +D L + E + + YE +K E KN PS
# Sbjct: 780 IDLLGKRPF---PERNDAFDKYLNDYETEKIRKEEEKNEKRNEPKPS 823
#
#
# >YDL058w
# Length = 1790
#
# Score = 29.6 bits (65), Expect = 3.3
# Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
#
# Query: 3 EKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTD 62
# E ++ IEA SG + + LN A+ R E V+ L D + +
# Sbjct: 1569 ELKSKLRIEAKSGSELETVKQE-----LNNAQEKIRINAEENTVLKSKLEDIERELKDKQ 1623
#
# Query: 63 ADIRATFGD---------EVADLVASHTENKTLSWEERKAHTIE-QVRTGSLEEKALIVA 112
# A+I++ + E+ + S + S EER+A + QV L+EKA+++
# Sbjct: 1624 AEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLE 1683
#
# Query: 113 DKLDNLTSVKYALSSEGKSV 132
# K ++L + + A + +V
# Sbjct: 1684 TKYNDLVNKEQAWKRDEDTV 1703
#
#
# >7301678
# Length = 4820
#
# Score = 29.6 bits (65), Expect = 3.3
# Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
#
# Query: 107 KALIVADKLDNLTSVKYALSSEGKSVWGYFKRGYELQKWYNEGIK------NNMEYGLNP 160
# KA++ D L+++ S+ + K + GY E+ +W NEG+ N +
# Sbjct: 3933 KAMVFDDWLEDIASLGIPIQLPFK-IDGYLTTDVEISQWSNEGLPPDELSIQNGILTMRA 3991
#
# Query: 161 SDVPSFFDEYARLVKWIFKK 180
# S P D + ++WI K+
# Sbjct: 3992 SRFPLCIDPQLQALQWIRKR 4011
#
#
# >Hs4758200
# Length = 2871
#
# Score = 28.9 bits (63), Expect = 5.7
# Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
#
# Query: 103 SLEEKALIVADKLDNLTSVKYALSSEGKSVWGYFKRGYELQKWYNE---GIKNNMEYGLN 159
# SLEE A + DK + +K E K W Y +++ Y+E +KN E +N
# Sbjct: 1312 SLEEAAKTIQDKNKEIERLKAEFQEEAKRRWEYENELSKVRNNYDEEIISLKNQFETEIN 1371
#
#
# >CE20657
# Length = 313
#
# Score = 28.9 bits (63), Expect = 5.7
# Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
#
# Query: 40 GFREEVVVAGLLHDAVEDTEMTDADIRATFGDEVAD-------LVASHTENKTLSWEERK 92
# GF ++ + + ++ + T +A R + DE AD + S + K +SWEE
# Sbjct: 75 GFVDKSEILAWVSESYQKTVDREAVERISELDENADGFLYFKNTLFSLVDRKHVSWEEYL 134
#
# Query: 93 AHTIEQVRTGSLEEKALIVADKL 115
# A + + EE++LI DK+
# Sbjct: 135 ADSFPDEELHNKEEESLIAQDKM 157
#
#
# >CE09478
# Length = 505
#
# Score = 28.9 bits (63), Expect = 5.7
# Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
#
# Query: 125 LSSEGKSVWGYFKRGYELQKWYNEGIKNNMEYGLN 159
# L+ + K WG KR +L+KW N IKN + G N
# Sbjct: 464 LAPDEKQEWG--KRSAQLRKWQNWQIKNCLVRGCN 496
#
#
# >7296122
# Length = 636
#
# Score = 28.5 bits (62), Expect = 7.4
# Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
#
# Query: 63 ADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSVK 122
# A I FGD++AD + H K L ++ H +Q ++ L+ D ++
# Sbjct: 375 ASIHDYFGDQMADCLEDHNARKCLVCQQ---HNAQQTKSAPLKTSTPSSTDLFSKFSAAM 431
#
# Query: 123 YALSSEGK 130
# + S+E K
# Sbjct: 432 KSKSAEVK 439
#
#
# >SPBC3D6.04c
# Length = 689
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 5/81 (6%)
#
# Query: 42 REEVVVAGLLHDAVEDTEMTDADIRATFGDEVADL----VASHTENKTLSWEERKAHTIE 97
# +E+ + L + + E + A +R +V ++ V H N TL +E KA +E
# Sbjct: 486 KEKTNIEAFLREQIITLESSIATLRQELA-QVTEINSCRVLQHRSNPTLKYERIKAAQLE 544
#
# Query: 98 QVRTGSLEEKALIVADKLDNL 118
# + + KAL+ K+D L
# Sbjct: 545 MLNAENSALKALLEDKKVDCL 565
#
#
# >Hs9506625
# Length = 865
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
#
# Query: 51 LHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALI 110
# L DA + E+T + TF D V D S +E + EE K+ +V+T SL EK
# Sbjct: 451 LVDAKHEVEITSDGMETTFIDSVED---SESEEE----EEGKSSETGKVKTTSLTEKK-- 501
#
# Query: 111 VADKLDNLTSVKYALSSEGK 130
# A + Y + GK
# Sbjct: 502 -ASRRQKEIPFSYLVGDSGK 520
#
#
# >Hs4826988
# Length = 407
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
#
# Query: 77 VASHTENKTLSWEERKAHTIE-QVRTGSLEEKALIVADKLDNLTSVKYALS-SEGKSVWG 134
# V HT+ K L + ++KAH +E Q+ G++ EK +L+ V S SE V
# Sbjct: 162 VIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIA 221
#
# Query: 135 YFK-RGYE--LQKWYNEGIKNNMEYGL 158
# K RG + +W+ + + GL
# Sbjct: 222 VTKGRGVKGVTSRWHTKKLPRKTHKGL 248
#
#
# >Hs21389449
# Length = 504
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
#
# Query: 80 HTENK---TLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSVKYALSSEGKSVWGYF 136
# H E K LSW +AH++E ++ +EEK +++ +D + +AL+ GYF
# Sbjct: 275 HDEKKFKQLLSW---RAHSLEIIQVIYVEEKQVVLTASIDGSVRLWHALNGH---YCGYF 328
#
# Query: 137 --KRGYELQK 144
# +R +EL +
# Sbjct: 329 GQRRLFELSQ 338
#
#
# >CE29296
# Length = 1004
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 26/121 (21%), Positives = 44/121 (35%), Gaps = 11/121 (9%)
#
# Query: 62 DADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSV 121
# D I+ +GD N T WEE+ T T E+++ D ++
# Sbjct: 763 DIQIQRDYGDRAPSRDLDFVRN-TYKWEEQLEDTKVTTTTKIYEKESRDWRDVINQQRQA 821
#
# Query: 122 K----------YALSSEGKSVWGYFKRGYELQKWYNEGIKNNMEYGLNPSDVPSFFDEYA 171
# A SS ++ Y R E ++ + + EY + P+D P ++Y
# Sbjct: 822 APGNSADRRGIAATSSSLSNLPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYE 881
#
# Query: 172 R 172
# R
# Sbjct: 882 R 882
#
#
# >At5g20210
# Length = 256
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 14/43 (32%), Positives = 20/43 (45%)
#
# Query: 62 DADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGSL 104
# D R+ GD + L EN TL+W + K IE+ G +
# Sbjct: 98 DTAFRSMEGDALLWLQCLRQENPTLTWSQLKTELIEEFGGGDI 140
#
#
# >At2g34970
# Length = 730
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 25/110 (22%), Positives = 44/110 (39%), Gaps = 6/110 (5%)
#
# Query: 12 AHSGQVRK-ITGEPYFSHPLNVARILRRAGFREEVVVAGLLHDAVEDTEMTDADIRATFG 70
# AHS QV + + ++SHP + R + +++ +T D G
# Sbjct: 79 AHSMQVIEYLEKSEWYSHPNLLVRTIESHKSISAGDALRYMYEQQTETSQIQGDFVLVSG 138
#
# Query: 71 DEV-----ADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKL 115
# D V ADL+ H E K + I+Q ++ L ++ + D+L
# Sbjct: 139 DTVSNMPLADLIQEHRERKKKDEKAIMTMVIKQSKSSPLTHQSRLGTDQL 188
#
#
# >7291057
# Length = 4547
#
# Score = 28.1 bits (61), Expect = 9.7
# Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
#
# Query: 74 ADLVASHTENKTLSWEERKAHTIEQVRTGSLEEKALIVADKLDNLTSVKYALSSEGKSVW 133
# A L ++++ + W + K + IE +R KA++ D+L + S+ E W
# Sbjct: 4163 AGLTIDYSQDHIIYWVDTKLNAIESMRADGSRRKAIVRGDQLRHPVSLDL---FESNMFW 4219
#
# Query: 134 GYFKRGYEL--QKWYNEGIKNNM-EYGLNPSDVPSFFDE 169
# G EL Q + G++ + Y +NPS + + D+
# Sbjct: 4220 MTRDTG-ELVRQDKFGRGVQVVLHRYIVNPSGLKVYHDK 4257
#
#
Database: kyva
Posted date: Nov 11, 2002 5:09 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,487,873
Number of Sequences: 112920
Number of extensions: 639666
Number of successful extensions: 1840
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 30
length of query: 180
length of database: 47,500,486
effective HSP length: 102
effective length of query: 78
effective length of database: 35,982,646
effective search space: 2806646388
effective search space used: 2806646388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)