R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|1174318|gb|AAB35482.1| Ca2+/calmodulin-dependent protein kinase beta e
isoform, beta e CaM kinase {alternatively spliced} [rats,
Sprague-Dawley, Peptide Partial, 74 aa]
Length = 74
Frame -1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 1.6, P = 0.80
Identities = 21/69 (30%), Positives = 29/69 (42%), Frame = -1
Query: 234 ASLSSVLAEINSRLRNVVGNMQGDNTVPSGQMESNSRDLSSGSESRPPTVNKQQDTVDVN 55
A L+++LA N + N + D P NS ++S S PP + Q TV N
Sbjct: 1 AILTTMLATRNFSAAKSLLNKKADGVKPQTNSTKNSSAITSPKGSLPPAALEPQTTVIHN 60
Query: 54 GFGAISASS 28
I SS
Sbjct: 61 PVDGIKESS 69
>gi|7189444|gb|AAF38354.1| (AE002212) hypothetical protein [Chlamydophila
pneumoniae AR39]
Length = 39
Frame -3 hits (HSPs): _______________ ___________
__________________________________________________
Database sequence: | | | 39
0 20
Minus Strand HSPs:
Score = 41 (14.4 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 5/11 (45%), Positives = 8/11 (72%), Frame = -3
Query: 274 WVWYFYLTATF 242
W W+FYL + +
Sbjct: 4 WQWFFYLYSQY 14
Score = 37 (13.0 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 6/8 (75%), Positives = 7/8 (87%), Frame = -3
Query: 133 KQQGLVFW 110
K+QGL FW
Sbjct: 25 KKQGLCFW 32
>gi|7482503|pir||F69124 hypothetical protein MTH201 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621246|gb|AAB84707.1|
(AE000807) unknown [Methanobacterium thermoautotrophicum]
Length = 147
Frame -1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 3.7, P = 0.98
Identities = 19/75 (25%), Positives = 35/75 (46%), Frame = -1
Query: 324 TIPSHPPGVGVSSSTQTGFGISTSQPPS---DSASLSSVLAEINSRLRNVVGNMQGDNTV 154
T S P S + TG G TS+ PS ++ S A+++++ + + G+ +
Sbjct: 49 TTTSPAPTKKTSDRSSTGSGTKTSKSPSGGVETGSAQGEAADVSAQNKTDIQGQDGNEST 108
Query: 153 PSGQMESNSRDLSSG 109
PSG + + +SG
Sbjct: 109 PSGNITGKEKQGTSG 123
>gi|3915439|sp|O13695|YEN1_SCHPO HYPOTHETICAL 52.9 KD SERINE-RICH PROTEIN
C11G7.01 IN CHROMOSOME I >gi|7492035|pir||T37544 hypothetical
serine-rich protein - fission yeast (Schizosaccharomyces pombe)
>gi|2408006|emb|CAB16206.1| (Z99161) hypothetical serine-rich
protein. [Schizosaccharomyces pombe]
Length = 536
Frame -1 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 536
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: SER-RICH. 25..238
Entrez Transmembrane region: POTENTIAL. 247..267
Entrez Transmembrane region: POTENTIAL. 351..371
PRODOM PD000651: VL2(74) O18758(34) MUC2(10) 3..228
PRODOM PD126628: YEN1_SCHPO 230..535
__________________
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 5.5, P = 1.0
Identities = 29/111 (26%), Positives = 53/111 (47%), Frame = -1
Query: 339 MS*QQTIPSHPPGVGVSSSTQTGFGISTSQPPSDSASLSSVLAEINSRLRNVVGNMQGDN 160
+S IPS + +SSS+ T S+S P S+S +S + +S + ++V + +
Sbjct: 35 LSSSSVIPSSSSSM-LSSSSATAISSSSSSSPLSSSSFTSPAS--SSFITSLVSSSSQQS 91
Query: 159 TVPSGQMESNSRDLSSGSESRPPTVNKQQDTVDVNGFGAI-SASSVGCTSES 7
+ S + S+S + S S PT + + + + S+SS G +S S
Sbjct: 92 SSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSS 143
>gi|1174316|gb|AAB35480.1| Ca2+/calmodulin-dependent protein kinase beta
isoform, beta CaM kinase {alternatively spliced} [rats,
Sprague-Dawley, Peptide Partial, 98 aa]
Length = 98
Frame -1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 6.8, P = 1.0
Identities = 21/80 (26%), Positives = 34/80 (42%), Frame = -1
Query: 267 GISTSQPPSDSASLSSVLAEINSRLRNVVGNMQGDNTVPSGQMESNSRDLSSGSESRPPT 88
G T+ P + S + S + + ++++ N + D P NS ++S S PP
Sbjct: 15 GRQTTAPATMSTAASGTTMGLVEQAKSLL-NKKADGVKPQTNSTKNSSAITSPKGSLPPA 73
Query: 87 VNKQQDTVDVNGFGAISASS 28
+ Q TV N I SS
Sbjct: 74 ALEPQTTVIHNPVDGIKESS 93
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.164 0.612
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.145 0.473
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.365 0.160 0.617
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.317 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.152 0.530
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.364 0.161 0.701
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 157 157 10. 74 3 12 22 0.098 34
30 0.12 36
+2 0 157 157 10. 74 3 12 22 0.098 34
30 0.12 36
+1 0 158 157 10. 74 3 12 22 0.098 34
30 0.12 36
-1 0 158 158 10. 74 3 12 22 0.095 34
30 0.097 37
-2 0 157 157 10. 74 3 12 22 0.098 34
30 0.12 36
-3 0 157 157 10. 74 3 12 22 0.098 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 5
No. of states in DFA: 593 (58 KB)
Total size of DFA: 195 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 216.28u 1.26s 217.54t Elapsed: 00:01:35
Total cpu time: 216.33u 1.28s 217.61t Elapsed: 00:01:36
Start: Wed Feb 14 17:55:17 2001 End: Wed Feb 14 17:56:53 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000