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BUILD 129
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SNP linked to Gene LIF(geneID:3976) Via Contig Annotation
rs# on all gene models to Batch Query
all rs# to file.

  Gene Model (mRNA alignment) information from genome sequence back to top
Total gene model (contig mRNA transcript): 3
mrnatranscriptproteinmrna orientationContigContig LabelList SNP
NM_002309.2minus strandNP_002300.1reverseNT_011520.11reference<- currently shown
NM_002309.2minus strandNP_002300.1reverseNW_927628.1CeleraView snp on GeneModel
NM_002309.2minus strandNP_002300.1reverseNW_001838745.1HuRefView snp on GeneModel

Include clinically associated in gene region cSNP has frequency double hit

gene model
(contig mRNA transcript):
Contig LabelContigmrnaproteinmrna orientationtranscriptsnp count
referenceNT_011520.11NM_002309.2NP_002300.1reverseminus strand3, coding

Color Legend

Region Contig
position
mRNA
pos
dbSNP rs#
cluster id
Hetero-
zygosity
Validation 3D Clinically
Associated
Function dbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
PubMed
exon_310030419463 rs2412982 N.D.withHapMapFreqYessynonymousTLeu [L]3133
contig referenceCLeu [L]3133
10030474408 rs2412983 N.D.withHapMapFreq missenseTPhe [F]2115
contig referenceCSer [S]2115
10030562320 rs41281637 N.D. missenseAMet [M]186
contig referenceGVal [V]186
exon_11003325365start codon1

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Revised: May 25, 2006 1:38 PM .