Basic Search | Intermediate Search | Advanced SQL Search | Gene Image Map| Home
The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name | Repeat Type | Copy # | Location | Length | Gene & Intergenic Id(s) | Definitions-Comments |
ISPg1 | IS element | 22.00 | 216437,217774 501973,503310 605931,607268 810913,812246 814726,816059 882008,883345 905769,907103 912910,914243 1000355,1001688 1093026,1094363 1257740,1259077 1275421,1276758 1304320,1305653 1319572,1320909 1463776,1465109 1481481,1482814 1532322,1533659 1706134,1707471 2005445,2006782 2008934,2010268 2101130,2102459 2299567,2300900 |
  | PG0169 , PG0169.1 , IGR0139, IGR0140, PG0419 , PG0420 , IGR0351, IGR0352, PG0499 , IGR0420, IGR0421, PG0686 , IGR0577, IGR0578, PG0689 , IGR0579, IGR0580, PG0740 , IGR0628, IGR0629, PG0756 , PG0757 , IGR0645, IGR0646, PG0763 , PG0763.1 , IGR0650, IGR0651, PG0838 , PG0839 , IGR0715, IGR0716, PG0918 , IGR0782, IGR0783, PG1050 , IGR0896, IGR0897, PG1062 , PG1061.2 , IGR0906, IGR0907, PG1087 , PG1086.1 , IGR0928, IGR0929, PG1099 , PG1100 , IGR0941, IGR0942, PG1215 , IGR1041, IGR1042, PG1229 , PG1230 , IGR1053, IGR1054, PG1267 , IGR1091, IGR1092, PG1422 , IGR1215, IGR1216, PG1660 , PG1662 , PG1663 , IGR1414, IGR1415, PG1665 , PG1664.1 , IGR1419, IGR1420, PG1755 , IGR1499, IGR1500, PG1919 , IGR1649, IGR1650  | ISPg1 transposase (IS1106-related transposase) hypothetical protein (ISPg1-related) ISPg5-related orf-1 ISPg1 transposase (IS1106-related transposase) ISPg1 transposase (IS1106-related transposase) ISPG1 transposase fragment (IS1106-related transposase) ISPg1 transposase fragment (IS1106-related transposase) ISPg1 transposase (IS1106-related transposase) ISPg1 transposase fragment (IS1106-related transposase) possible transposase ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein calcium ion-transporting ATPase ISPg1 transposase fragment (IS1106-related transposase) ISPg1 transposase (IS1106-related transposase) ISPg1 transposase (IS1106-related) transposase ISPg1 transposase (IS1106-related) transposase hypothetical protein ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein ISPg1 transposase (IS1106-related transposase) hypothetical protein ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein ISPg1 transposase fragment (IS1106-related transposase) ISPG1 transposase (IS1106-like transposase) ISPg1 transposase (IS1106-like transposase) ISPg3 C-terminal fragment ISPg1 transposase (IS1106-related transposase) ISPg3 (IS195) transposase ISPg1 transposase fragment(IS1106-related transposase) hypothetical protein ISPg1 transposase fragment (IS1106-related transposase) ISPg1 transposase fragment (IS1106-related transposase) intergenic region intergenic region  |
ISPg1 fragment | IS element | 11.00 | 62319,63428 236644,236774 874899,875694 1004468,1005059 1050425,1050559 1398790,1399363 1399362,1399677 1429737,1430945 1432151,1432287 1945182,1945751 1945750,1946065 2156508,2157658 2274560,2274873 2275111,2276138 2302343,2302576 |
  | PG0044 , IGR0041, IGR0042, PG0181.1 , IGR0153, PG0732 , IGR0619, PG0842 , IGR0719, PG0885 , PG1159 , IGR0992, PG1159 , IGR0993, PG1184 , IGR1016, IGR1017, IGR1018, PG1607 , PG1608 , IGR1368, PG1608 , IGR1369, PG1798 , IGR1540, IGR1541, PG1894.1 , IGR1627, PG1895 , PG1895.1 , IGR1627, IGR1628, IGR1651  | ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein ISPg1 fragment (IS1106-related transposase fragment) ISPg1 fragment (IS1126-related transposase fragment) hypothetical protein ISPg1 fragment (IS1126-related transposase fragment) ISPg1 fragment (IS1126-related transposase fragment) ISPG1 transposase fragment (IS1106-related transposase) ISPG1 fragment (TnpA3-related) ISPg1 fragment ISPg1 fragment ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein ISPg1 transposase fragment (IS1106-related transposase) hypothetical protein intergenic region  |
ISPg2 | IS element | 5.00 | 308933,310139 927845,929051 1430946,1432152 1831180,1832386 2283295,2284501 |
  | PG0249 , IGR0210, IGR0211, PG0775 , IGR0660, IGR0661, PG1185 , IGR1017, IGR1018, PG1522 , IGR1299, IGR1300, PG1905 , IGR1635, IGR1636  | ISPg2 (PGIS2) transposase ISPg2 (PGIS2) transposase ISPg2 (PGIS2) transposase ISPg2 (PGIS2) transposase ISPg2 (PGIS2) transposase intergenic region intergenic region  |
ISPg3 | IS element | 4.00 | 230914,231983 293939,295008 852832,853901 1339812,1340881 |
  | PG0178 , IGR0148, IGR0149, PG0236 , IGR0198, IGR0199, PG0718 , IGR0606, IGR0607, PG1115 , IGR0955, IGR0956  | ISPg3 (IS195) transposase ISPg3 (IS195) transposase ISPg3 (IS195) transposase ISPg3 (IS195) transposase intergenic region intergenic region  |
ISPg3 fragment | IS element | 3.00 | 336295,336529 1092978,1093024 1094372,1095390 2004991,2005444 2006783,2007403 |
  | PG0273 , IGR0782, PG0919 , IGR0783, IGR0784, PG1660 , IGR1413, PG1663 , IGR1416  | ISPg3-related (IS195-related) element ISPg3 (IS195) transposase ISPg3 C-terminal fragment ISPg3 (IS195) transposase intergenic region  |
ISPg4 | IS element | 10.00 | 22050,23443 60926,62319 199096,200490 258469,259863 526261,527655 1029617,1031011 1338384,1339777 1741734,1743128 1758401,1759794 2300949,2302342 |
  | PG0016 , IGR0015, IGR0016, PG0043 , IGR0040, IGR0041, PG0161 , PG0162 , PG0163 , IGR0132, IGR0133, PG0205 , IGR0169, IGR0170, PG0445 , IGR0371, IGR0372, PG0868 , IGR0740, IGR0741, PG1114 , IGR0954, IGR0955, PG1447 , IGR1239, IGR1240, PG1461 , IGR1247, IGR1248, PG1920 , IGR1650, IGR1651  | ISPg4 transposase ISPg4 transposase Pg-II fimbriae c ISPg4 transposase Mfa1 protein, 67 kDa fimbrillin ISPg4 transposase ISPg4 transposase ISPg4 transposase ISPg4 transposase ISPg4 transposase ISPg4 transposase IGR1248 was modified with the addition of PG1461.1 Aug. 2001. ISPg4 transposase intergenic region intergenic region  |
ISPg5 | IS element | 11.00 | 7070,8583 48047,49560 464144,465658 500510,501972 503310,503365 648156,649667 1002186,1003697 1505120,1506633 1724669,1726182 1795031,1796544 2154750,2154831 2155071,2156510 2233855,2235368 |
  | PG0007 , PG0008 , IGR0006, IGR0007, IGR0008, PG0033 , PG0034 , IGR0032, IGR0033, IGR0034, PG0391 , PG0392 , IGR0326, IGR0327, IGR0328, PG0418 , PG0419 , IGR0349, IGR0350, IGR0352, PG0532 , PG0533 , IGR0450, IGR0451, IGR0452, PG0840 , PG0841 , IGR0716, IGR0717, IGR0718, PG1246 , PG1247 , IGR1071, IGR1072, IGR1073, PG1436 , PG1437 , IGR1229, IGR1230, IGR1231, PG1490 , PG1491 , IGR1271, IGR1272, IGR1273, IGR1538, PG1796 , PG1797 , IGR1538, IGR1539, IGR1540, PG1861 , PG1862 , PG1862.1 , IGR1595, IGR1596, IGR1597  | ISPg5 transposase ISPg5-related orf-1 ISPg5-related orf-1 ISPg5 transposase ISPg5 transposase ISPg5-related orf-1 ISPg5 transposase ISPg5-related orf-1 ISPg5-related orf-1 ISPg5 transposase ISPg5-related orf-1 ISPg5 transposase ISPg5-related orf-1 ISPg5 transposase IGR1073 was modified with addition of PG1247.1 Aug. 2001. ISPg5 transposase ISPg5-related orf-1 ISPg5-related orf-1 ISPg5 transposase ISPg5 transposase ISPg5-related orf-1 ISPg5 transposase ISPg5-related orf-1 hypothetical protein intergenic region intergenic region intergenic region  |
tan1 | tandem | 4.33 | 206745,206757 | 3 | PG0167   | conserved hypothetical protein; Rsa related  |
tan2 | tandem | 4.00 | 569898,569909 | 3 | PG0479   | CTP synthetase (UTP ammonia ligase)  |
tan3 | tandem | 4.00 | 623033,623044 | 3 | PG0511   | conserved hypothetical protein  |
tan4 | tandem | 4.00 | 628331,628342 | 3 | PG0515   | conserved hypothetical protein  |
tan5 | tandem | 4.33 | 751962,751974 | 3 | PG0627   | outer membrane protein  |
tan6 | tandem | 4.33 | 890212,890224 | 3 | PG0747   | conserved hypothetical protein  |
tan7 | tandem | 4.33 | 999863,999875 | 3 | PG0838   | calcium ion-transporting ATPase  |
tan8 | tandem | 4.00 | 1005964,1005975 | 3 | PG0843   | ABC transporter, permease protein  |
tan9 | tandem | 5.00 | 1187428,1187442 | 3 | PG0995   | aspartate 1-decarboxylase protein  |
tan10 | tandem | 4.33 | 1198000,1198012 | 3 | PG1003   | pseudouridine synthase B (pseudouridylate synthase) (uracil hydrolyase)  |
tan11 | tandem | 4.00 | 1204777,1204788 | 3 | PG1009   | exodeoxyribonuclease VII large subunit  |
tan12 | tandem | 4.00 | 1353576,1353587 | 3 | PG1124   | conserved hypothetical protein  |
tan13 | tandem | 4.00 | 1556580,1556591 | 3 | PG1296   | transfer region-related protein TraG  |
tan14 | tandem | 4.33 | 1566071,1566083 | 3 | IGR1120  | intergenic region  |
tan15 | tandem | 4.00 | 1920269,1920280 | 3 | PG1595   | RNA polymerase sigma factor (possible ECF sigma factor)  |
tan16 | tandem | 4.00 | 2047497,2047508 | 3 | PG1708   | 4-hydroxybutyrate coenzyme A transferase (4-hydroxybutyrate CoA transferase)  |
tan17 | tandem | 4.00 | 2133783,2133794 | 3 | PG1776   | glutamate synthase beta subunit (glutamate synthase small subunit)  |
tan18 | tandem | 4.25 | 512908,512924 | 4 | PG0429   | conserved hypothetical protein  |
tan19 | tandem | 2.30 | 663772,663794 | 10 | PG0549   | hypothetical protein  |
tan20 | tandem | 2.00 | 792315,792334 | 10 | PG0673   | probable lactoylglutathione lyase  |
tan21 | tandem | 2.00 | 971475,971494 | 10 | PG0810   | conserved hypothetical protein  |
tan22 | tandem | 2.00 | 1065584,1065603 | 10 | PG0899   | conserved hypothetical protein; possible TonB-dependent receptor  |
tan23 | tandem | 2.00 | 1569787,1569806 | 10 | IGR1122  | intergenic region  |
tan24 | tandem | 2.00 | 2096041,2096060 | 10 | PG1752   | tonB-linked outer membrane receptor P90  |
tan25 | tandem | 2.25 | 366222,366248 | 12 | PG0307   | transcription termination factor rho  |
tan26 | tandem | 4.50 | 1604227,1604280 | 12 | PG1335   | hypothetical protein  |
tan27 | tandem | 2.08 | 1740276,1740300 | 12 | PG1446   | methylmalonyl-CoA mutase beta subunit  |
tan28 | tandem | 2.41 | 2121412,2121440 | 12 | PG1768   | arginine-specific cysteine proteinase; gingipain R1  |
tan29 | tandem | 2.00 | 135178,135203 | 13 | IGR0086  | intergenic region  |
tan30 | tandem | 2.00 | 1491120,1491145 | 13 | IGR1060  | intergenic region  |
tan31 | tandem | 2.25 | 1259128,1259163 | 16 | PG1051 , IGR0897  | hypothetical protein intergenic region  |
tan32 | tandem | 2.22 | 623853,623901 | 22 | IGR0432  | intergenic region  |
tan33 | tandem | 2.95 | 105127,105194 | 23 | IGR0070  | intergenic region  |
tan34 | tandem | 2.82 | 105174,105238 | 23 | IGR0070  | intergenic region  |
tan35 | tandem | 2.00 | 236313,236358 | 23 | IGR0152  | intergenic region  |
tan36 | tandem | 2.21 | 236376,236426 | 23 | IGR0152  | intergenic region  |
tan37 | tandem | 3.91 | 535076,535165 | 23 | IGR0377  | intergenic region  |
tan38 | tandem | 2.08 | 644237,644284 | 23 | PG0527.1   | hypothetical protein  |
tan39 | tandem | 2.82 | 644263,644327 | 23 | PG0527.1   | hypothetical protein  |
tan40 | tandem | 2.78 | 680784,680847 | 23 | PG0564.1   | hypothetical protein  |
tan41 | tandem | 2.00 | 680896,680941 | 23 | PG0564.1 , IGR0478  | hypothetical protein intergenic region  |
tan42 | tandem | 2.91 | 854168,854234 | 23 | IGR0607  | intergenic region  |
tan43 | tandem | 3.60 | 1043369,1043451 | 23 | IGR0748  | intergenic region  |
tan44 | tandem | 2.91 | 1191822,1191888 | 23 | IGR0854  | intergenic region  |
tan45 | tandem | 2.56 | 1191982,1192040 | 23 | IGR0854  | intergenic region  |
tan46 | tandem | 2.56 | 1365892,1365950 | 23 | IGR0971  | intergenic region  |
tan47 | tandem | 2.95 | 1471536,1471603 | 23 | IGR1046  | intergenic region  |
tan48 | tandem | 2.95 | 1471583,1471650 | 23 | IGR1046  | intergenic region  |
tan49 | tandem | 2.91 | 1511442,1511508 | 23 | IGR1076  | intergenic region  |
tan50 | tandem | 4.95 | 1511511,1511624 | 23 | IGR1076  | intergenic region  |
tan51 | tandem | 2.91 | 1637466,1637532 | 23 | IGR1168  | intergenic region  |
tan52 | tandem | 2.86 | 1637511,1637576 | 23 | IGR1168  | intergenic region  |
tan53 | tandem | 2.47 | 1637555,1637611 | 23 | IGR1168  | intergenic region  |
tan54 | tandem | 3.04 | 1802879,1802948 | 23 | IGR1277  | intergenic region  |
tan55 | tandem | 2.95 | 1802950,1803017 | 23 | IGR1277  | intergenic region  |
tan56 | tandem | 2.95 | 1803017,1803084 | 23 | IGR1277  | intergenic region  |
tan57 | tandem | 2.00 | 2028718,2028773 | 28 | IGR1450  | intergenic region  |
tan58 | tandem | 2.97 | 242703,242824 | 41 | IGR0157  | intergenic region  |
tan59 | tandem | 2.19 | 242867,242956 | 41 | IGR0157  | intergenic region  |
tan60 | tandem | 2.14 | 481662,481749 | 41 | PG0404.1 , PG0404.2   | hypothetical protein hypothetical protein  |
tan61 | tandem | 2.85 | 607585,607701 | 41 | PG0500   | hypothetical protein  |
tan62 | tandem | 2.00 | 607662,607743 | 41 | PG0500   | hypothetical protein  |
tan63 | tandem | 3.00 | 607785,607907 | 41 | PG0500 , IGR0422  | hypothetical protein intergenic region  |
tan64 | tandem | 3.17 | 658225,658354 | 41 | IGR0460  | intergenic region  |
tan65 | tandem | 2.97 | 693743,693864 | 41 | IGR0488  | intergenic region  |
tan66 | tandem | 2.48 | 693825,693926 | 41 | IGR0488  | intergenic region  |
tan67 | tandem | 2.19 | 693997,694086 | 41 | IGR0488  | intergenic region  |
tan68 | tandem | 4.95 | 694093,694295 | 41 | IGR0488  | intergenic region  |
tan69 | tandem | 2.26 | 732576,732668 | 41 | PG0612.1   | hypothetical protein  |
tan70 | tandem | 2.00 | 1036889,1036970 | 41 | IGR0744  | intergenic region  |
tan71 | tandem | 2.19 | 1237619,1237708 | 41 | IGR0885  | intergenic region  |
tan72 | tandem | 2.97 | 1237710,1237831 | 41 | IGR0885  | intergenic region  |
tan73 | tandem | 3.68 | 1237792,1237942 | 41 | IGR0885  | intergenic region  |
tan74 | tandem | 2.90 | 1264917,1265035 | 41 | IGR0901  | intergenic region  |
tan75 | tandem | 3.24 | 1265028,1265160 | 41 | IGR0901  | intergenic region  |
tan76 | tandem | 2.97 | 1371583,1371704 | 41 | IGR0974  | intergenic region  |
tan77 | tandem | 3.97 | 1371665,1371827 | 41 | IGR0974  | intergenic region  |
tan78 | tandem | 3.19 | 1419870,1420000 | 41 | IGR1009  | intergenic region  |
tan79 | tandem | 2.21 | 1711205,1711295 | 41 | IGR1218  | intergenic region  |
tan80 | tandem | 3.63 | 1711297,1711445 | 41 | IGR1218  | intergenic region  |
tan81 | tandem | 2.00 | 1711501,1711582 | 41 | IGR1218  | intergenic region  |
tan82 | tandem | 2.65 | 1785544,1785652 | 41 | IGR1265  | intergenic region  |
tan83 | tandem | 2.38 | 1114296,1114400 | 44 | IGR0795  | intergenic region  |
tan84 | tandem | 2.43 | 105060,105171 | 46 | PG0078 , IGR0070  | hypothetical protein intergenic region  |
tan85 | tandem | 3.08 | 298612,298753 | 46 | IGR0202  | intergenic region  |
tan86 | tandem | 2.13 | 854094,854191 | 46 | IGR0607  | intergenic region  |
tan87 | tandem | 2.52 | 1191911,1192026 | 46 | IGR0854  | intergenic region  |
tan88 | tandem | 2.30 | 1511419,1511577 | 69 | IGR1076  | intergenic region  |
tan89 | tandem | 2.28 | 1802881,1803038 | 69 | IGR1277  | intergenic region  |
tan90 | tandem | 2.08 | 1371747,1371917 | 82 | IGR0974  | intergenic region  |
tan91 | tandem | 2.06 | 1237619,1237872 | 123 | IGR0885  | intergenic region  |
tan92 | tandem | 2.27 | 1243761,1244060 | 132 | IGR0889  | intergenic region  |