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Repeat Table for Porphyromonas gingivalis

The tandem repeats listed in the table were identified using the Tandem Repeat Finder by G. Genson
"Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acids Research (1999) Vol. 27, No. 2, pp. 573-580.
Repeat Name Repeat Type Copy # Location Length Gene & Intergenic Id(s) Definitions-Comments
ISPg1 IS element 22.00 216437,217774
501973,503310
605931,607268
810913,812246
814726,816059
882008,883345
905769,907103
912910,914243
1000355,1001688
1093026,1094363
1257740,1259077
1275421,1276758
1304320,1305653
1319572,1320909
1463776,1465109
1481481,1482814
1532322,1533659
1706134,1707471
2005445,2006782
2008934,2010268
2101130,2102459
2299567,2300900
  PG0169 , PG0169.1 , IGR0139, IGR0140, PG0419 , PG0420 , IGR0351, IGR0352, PG0499 , IGR0420, IGR0421, PG0686 , IGR0577, IGR0578, PG0689 , IGR0579, IGR0580, PG0740 , IGR0628, IGR0629, PG0756 , PG0757 , IGR0645, IGR0646, PG0763 , PG0763.1 , IGR0650, IGR0651, PG0838 , PG0839 , IGR0715, IGR0716, PG0918 , IGR0782, IGR0783, PG1050 , IGR0896, IGR0897, PG1062 , PG1061.2 , IGR0906, IGR0907, PG1087 , PG1086.1 , IGR0928, IGR0929, PG1099 , PG1100 , IGR0941, IGR0942, PG1215 , IGR1041, IGR1042, PG1229 , PG1230 , IGR1053, IGR1054, PG1267 , IGR1091, IGR1092, PG1422 , IGR1215, IGR1216, PG1660 , PG1662 , PG1663 , IGR1414, IGR1415, PG1665 , PG1664.1 , IGR1419, IGR1420, PG1755 , IGR1499, IGR1500, PG1919 , IGR1649, IGR1650  ISPg1 transposase (IS1106-related transposase)
hypothetical protein (ISPg1-related)
ISPg5-related orf-1
ISPg1 transposase (IS1106-related transposase)
ISPg1 transposase (IS1106-related transposase)
ISPG1 transposase fragment (IS1106-related transposase)
ISPg1 transposase fragment (IS1106-related transposase)
ISPg1 transposase (IS1106-related transposase)
ISPg1 transposase fragment (IS1106-related transposase)
possible transposase
ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
calcium ion-transporting ATPase
ISPg1 transposase fragment (IS1106-related transposase)
ISPg1 transposase (IS1106-related transposase)
ISPg1 transposase (IS1106-related) transposase
ISPg1 transposase (IS1106-related) transposase
hypothetical protein
ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
ISPg1 transposase (IS1106-related transposase)
hypothetical protein
ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
ISPg1 transposase fragment (IS1106-related transposase)
ISPG1 transposase (IS1106-like transposase)
ISPg1 transposase (IS1106-like transposase)
ISPg3 C-terminal fragment
ISPg1 transposase (IS1106-related transposase)
ISPg3 (IS195) transposase
ISPg1 transposase fragment(IS1106-related transposase)
hypothetical protein
ISPg1 transposase fragment (IS1106-related transposase)
ISPg1 transposase fragment (IS1106-related transposase)
intergenic region
intergenic region 
ISPg1 fragment IS element 11.00 62319,63428
236644,236774
874899,875694
1004468,1005059
1050425,1050559
1398790,1399363
1399362,1399677
1429737,1430945
1432151,1432287
1945182,1945751
1945750,1946065
2156508,2157658
2274560,2274873
2275111,2276138
2302343,2302576
  PG0044 , IGR0041, IGR0042, PG0181.1 , IGR0153, PG0732 , IGR0619, PG0842 , IGR0719, PG0885 , PG1159 , IGR0992, PG1159 , IGR0993, PG1184 , IGR1016, IGR1017, IGR1018, PG1607 , PG1608 , IGR1368, PG1608 , IGR1369, PG1798 , IGR1540, IGR1541, PG1894.1 , IGR1627, PG1895 , PG1895.1 , IGR1627, IGR1628, IGR1651  ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
ISPg1 fragment (IS1106-related transposase fragment)
ISPg1 fragment (IS1126-related transposase fragment)
hypothetical protein
ISPg1 fragment (IS1126-related transposase fragment)
ISPg1 fragment (IS1126-related transposase fragment)
ISPG1 transposase fragment (IS1106-related transposase)
ISPG1 fragment (TnpA3-related)
ISPg1 fragment
ISPg1 fragment
ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
ISPg1 transposase fragment (IS1106-related transposase)
hypothetical protein
intergenic region 
ISPg2 IS element 5.00 308933,310139
927845,929051
1430946,1432152
1831180,1832386
2283295,2284501
  PG0249 , IGR0210, IGR0211, PG0775 , IGR0660, IGR0661, PG1185 , IGR1017, IGR1018, PG1522 , IGR1299, IGR1300, PG1905 , IGR1635, IGR1636  ISPg2 (PGIS2) transposase
ISPg2 (PGIS2) transposase
ISPg2 (PGIS2) transposase
ISPg2 (PGIS2) transposase
ISPg2 (PGIS2) transposase
intergenic region
intergenic region 
ISPg3 IS element 4.00 230914,231983
293939,295008
852832,853901
1339812,1340881
  PG0178 , IGR0148, IGR0149, PG0236 , IGR0198, IGR0199, PG0718 , IGR0606, IGR0607, PG1115 , IGR0955, IGR0956  ISPg3 (IS195) transposase
ISPg3 (IS195) transposase
ISPg3 (IS195) transposase
ISPg3 (IS195) transposase
intergenic region
intergenic region 
ISPg3 fragment IS element 3.00 336295,336529
1092978,1093024
1094372,1095390
2004991,2005444
2006783,2007403
  PG0273 , IGR0782, PG0919 , IGR0783, IGR0784, PG1660 , IGR1413, PG1663 , IGR1416  ISPg3-related (IS195-related) element
ISPg3 (IS195) transposase
ISPg3 C-terminal fragment
ISPg3 (IS195) transposase
intergenic region 
ISPg4 IS element 10.00 22050,23443
60926,62319
199096,200490
258469,259863
526261,527655
1029617,1031011
1338384,1339777
1741734,1743128
1758401,1759794
2300949,2302342
  PG0016 , IGR0015, IGR0016, PG0043 , IGR0040, IGR0041, PG0161 , PG0162 , PG0163 , IGR0132, IGR0133, PG0205 , IGR0169, IGR0170, PG0445 , IGR0371, IGR0372, PG0868 , IGR0740, IGR0741, PG1114 , IGR0954, IGR0955, PG1447 , IGR1239, IGR1240, PG1461 , IGR1247, IGR1248, PG1920 , IGR1650, IGR1651  ISPg4 transposase
ISPg4 transposase
Pg-II fimbriae c
ISPg4 transposase
Mfa1 protein, 67 kDa fimbrillin
ISPg4 transposase
ISPg4 transposase
ISPg4 transposase
ISPg4 transposase
ISPg4 transposase
ISPg4 transposase
IGR1248 was modified with the addition of PG1461.1 Aug. 2001.
ISPg4 transposase
intergenic region
intergenic region 
ISPg5 IS element 11.00 7070,8583
48047,49560
464144,465658
500510,501972
503310,503365
648156,649667
1002186,1003697
1505120,1506633
1724669,1726182
1795031,1796544
2154750,2154831
2155071,2156510
2233855,2235368
  PG0007 , PG0008 , IGR0006, IGR0007, IGR0008, PG0033 , PG0034 , IGR0032, IGR0033, IGR0034, PG0391 , PG0392 , IGR0326, IGR0327, IGR0328, PG0418 , PG0419 , IGR0349, IGR0350, IGR0352, PG0532 , PG0533 , IGR0450, IGR0451, IGR0452, PG0840 , PG0841 , IGR0716, IGR0717, IGR0718, PG1246 , PG1247 , IGR1071, IGR1072, IGR1073, PG1436 , PG1437 , IGR1229, IGR1230, IGR1231, PG1490 , PG1491 , IGR1271, IGR1272, IGR1273, IGR1538, PG1796 , PG1797 , IGR1538, IGR1539, IGR1540, PG1861 , PG1862 , PG1862.1 , IGR1595, IGR1596, IGR1597  ISPg5 transposase
ISPg5-related orf-1
ISPg5-related orf-1
ISPg5 transposase
ISPg5 transposase
ISPg5-related orf-1
ISPg5 transposase
ISPg5-related orf-1
ISPg5-related orf-1
ISPg5 transposase
ISPg5-related orf-1
ISPg5 transposase
ISPg5-related orf-1
ISPg5 transposase
IGR1073 was modified with addition of PG1247.1 Aug. 2001.
ISPg5 transposase
ISPg5-related orf-1
ISPg5-related orf-1
ISPg5 transposase
ISPg5 transposase
ISPg5-related orf-1
ISPg5 transposase
ISPg5-related orf-1
hypothetical protein
intergenic region
intergenic region
intergenic region 
tan1 tandem 4.33 206745,206757 3 PG0167   conserved hypothetical protein; Rsa related 
tan2 tandem 4.00 569898,569909 3 PG0479   CTP synthetase (UTP ammonia ligase) 
tan3 tandem 4.00 623033,623044 3 PG0511   conserved hypothetical protein 
tan4 tandem 4.00 628331,628342 3 PG0515   conserved hypothetical protein 
tan5 tandem 4.33 751962,751974 3 PG0627   outer membrane protein 
tan6 tandem 4.33 890212,890224 3 PG0747   conserved hypothetical protein 
tan7 tandem 4.33 999863,999875 3 PG0838   calcium ion-transporting ATPase 
tan8 tandem 4.00 1005964,1005975 3 PG0843   ABC transporter, permease protein 
tan9 tandem 5.00 1187428,1187442 3 PG0995   aspartate 1-decarboxylase protein 
tan10 tandem 4.33 1198000,1198012 3 PG1003   pseudouridine synthase B (pseudouridylate synthase) (uracil hydrolyase) 
tan11 tandem 4.00 1204777,1204788 3 PG1009   exodeoxyribonuclease VII large subunit 
tan12 tandem 4.00 1353576,1353587 3 PG1124   conserved hypothetical protein 
tan13 tandem 4.00 1556580,1556591 3 PG1296   transfer region-related protein TraG 
tan14 tandem 4.33 1566071,1566083 3 IGR1120  intergenic region 
tan15 tandem 4.00 1920269,1920280 3 PG1595   RNA polymerase sigma factor (possible ECF sigma factor) 
tan16 tandem 4.00 2047497,2047508 3 PG1708   4-hydroxybutyrate coenzyme A transferase (4-hydroxybutyrate CoA transferase) 
tan17 tandem 4.00 2133783,2133794 3 PG1776   glutamate synthase beta subunit (glutamate synthase small subunit) 
tan18 tandem 4.25 512908,512924 4 PG0429   conserved hypothetical protein 
tan19 tandem 2.30 663772,663794 10 PG0549   hypothetical protein 
tan20 tandem 2.00 792315,792334 10 PG0673   probable lactoylglutathione lyase 
tan21 tandem 2.00 971475,971494 10 PG0810   conserved hypothetical protein 
tan22 tandem 2.00 1065584,1065603 10 PG0899   conserved hypothetical protein; possible TonB-dependent receptor 
tan23 tandem 2.00 1569787,1569806 10 IGR1122  intergenic region 
tan24 tandem 2.00 2096041,2096060 10 PG1752   tonB-linked outer membrane receptor P90 
tan25 tandem 2.25 366222,366248 12 PG0307   transcription termination factor rho 
tan26 tandem 4.50 1604227,1604280 12 PG1335   hypothetical protein 
tan27 tandem 2.08 1740276,1740300 12 PG1446   methylmalonyl-CoA mutase beta subunit 
tan28 tandem 2.41 2121412,2121440 12 PG1768   arginine-specific cysteine proteinase; gingipain R1 
tan29 tandem 2.00 135178,135203 13 IGR0086  intergenic region 
tan30 tandem 2.00 1491120,1491145 13 IGR1060  intergenic region 
tan31 tandem 2.25 1259128,1259163 16 PG1051 , IGR0897  hypothetical protein
intergenic region 
tan32 tandem 2.22 623853,623901 22 IGR0432  intergenic region 
tan33 tandem 2.95 105127,105194 23 IGR0070  intergenic region 
tan34 tandem 2.82 105174,105238 23 IGR0070  intergenic region 
tan35 tandem 2.00 236313,236358 23 IGR0152  intergenic region 
tan36 tandem 2.21 236376,236426 23 IGR0152  intergenic region 
tan37 tandem 3.91 535076,535165 23 IGR0377  intergenic region 
tan38 tandem 2.08 644237,644284 23 PG0527.1   hypothetical protein 
tan39 tandem 2.82 644263,644327 23 PG0527.1   hypothetical protein 
tan40 tandem 2.78 680784,680847 23 PG0564.1   hypothetical protein 
tan41 tandem 2.00 680896,680941 23 PG0564.1 , IGR0478  hypothetical protein
intergenic region 
tan42 tandem 2.91 854168,854234 23 IGR0607  intergenic region 
tan43 tandem 3.60 1043369,1043451 23 IGR0748  intergenic region 
tan44 tandem 2.91 1191822,1191888 23 IGR0854  intergenic region 
tan45 tandem 2.56 1191982,1192040 23 IGR0854  intergenic region 
tan46 tandem 2.56 1365892,1365950 23 IGR0971  intergenic region 
tan47 tandem 2.95 1471536,1471603 23 IGR1046  intergenic region 
tan48 tandem 2.95 1471583,1471650 23 IGR1046  intergenic region 
tan49 tandem 2.91 1511442,1511508 23 IGR1076  intergenic region 
tan50 tandem 4.95 1511511,1511624 23 IGR1076  intergenic region 
tan51 tandem 2.91 1637466,1637532 23 IGR1168  intergenic region 
tan52 tandem 2.86 1637511,1637576 23 IGR1168  intergenic region 
tan53 tandem 2.47 1637555,1637611 23 IGR1168  intergenic region 
tan54 tandem 3.04 1802879,1802948 23 IGR1277  intergenic region 
tan55 tandem 2.95 1802950,1803017 23 IGR1277  intergenic region 
tan56 tandem 2.95 1803017,1803084 23 IGR1277  intergenic region 
tan57 tandem 2.00 2028718,2028773 28 IGR1450  intergenic region 
tan58 tandem 2.97 242703,242824 41 IGR0157  intergenic region 
tan59 tandem 2.19 242867,242956 41 IGR0157  intergenic region 
tan60 tandem 2.14 481662,481749 41 PG0404.1 , PG0404.2   hypothetical protein
hypothetical protein 
tan61 tandem 2.85 607585,607701 41 PG0500   hypothetical protein 
tan62 tandem 2.00 607662,607743 41 PG0500   hypothetical protein 
tan63 tandem 3.00 607785,607907 41 PG0500 , IGR0422  hypothetical protein
intergenic region 
tan64 tandem 3.17 658225,658354 41 IGR0460  intergenic region 
tan65 tandem 2.97 693743,693864 41 IGR0488  intergenic region 
tan66 tandem 2.48 693825,693926 41 IGR0488  intergenic region 
tan67 tandem 2.19 693997,694086 41 IGR0488  intergenic region 
tan68 tandem 4.95 694093,694295 41 IGR0488  intergenic region 
tan69 tandem 2.26 732576,732668 41 PG0612.1   hypothetical protein 
tan70 tandem 2.00 1036889,1036970 41 IGR0744  intergenic region 
tan71 tandem 2.19 1237619,1237708 41 IGR0885  intergenic region 
tan72 tandem 2.97 1237710,1237831 41 IGR0885  intergenic region 
tan73 tandem 3.68 1237792,1237942 41 IGR0885  intergenic region 
tan74 tandem 2.90 1264917,1265035 41 IGR0901  intergenic region 
tan75 tandem 3.24 1265028,1265160 41 IGR0901  intergenic region 
tan76 tandem 2.97 1371583,1371704 41 IGR0974  intergenic region 
tan77 tandem 3.97 1371665,1371827 41 IGR0974  intergenic region 
tan78 tandem 3.19 1419870,1420000 41 IGR1009  intergenic region 
tan79 tandem 2.21 1711205,1711295 41 IGR1218  intergenic region 
tan80 tandem 3.63 1711297,1711445 41 IGR1218  intergenic region 
tan81 tandem 2.00 1711501,1711582 41 IGR1218  intergenic region 
tan82 tandem 2.65 1785544,1785652 41 IGR1265  intergenic region 
tan83 tandem 2.38 1114296,1114400 44 IGR0795  intergenic region 
tan84 tandem 2.43 105060,105171 46 PG0078 , IGR0070  hypothetical protein
intergenic region 
tan85 tandem 3.08 298612,298753 46 IGR0202  intergenic region 
tan86 tandem 2.13 854094,854191 46 IGR0607  intergenic region 
tan87 tandem 2.52 1191911,1192026 46 IGR0854  intergenic region 
tan88 tandem 2.30 1511419,1511577 69 IGR1076  intergenic region 
tan89 tandem 2.28 1802881,1803038 69 IGR1277  intergenic region 
tan90 tandem 2.08 1371747,1371917 82 IGR0974  intergenic region 
tan91 tandem 2.06 1237619,1237872 123 IGR0885  intergenic region 
tan92 tandem 2.27 1243761,1244060 132 IGR0889  intergenic region 


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