| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
19 |
| Archaea |
|
|
10 |
| |
|
|
19 |
| |
Euryarchaeota |
|
10 |
| |
|
Haloquadratum walsbyi (hwa) |
1 |
| |
|
Methanosarcina acetivorans (mac) |
1 |
| |
|
Methanococcus aeolicus (mae) |
1 |
| |
|
Methanosarcina barkeri (mba) |
1 |
| |
|
Candidatus Methanoregula boonei (mbn) |
1 |
| |
|
Methanococcoides burtonii (mbu) |
2 |
| |
|
Methanoculleus marisnigri (mem) |
1 |
| |
|
Methanospirillum hungatei (mhu) |
1 |
| |
|
Methanosarcina mazei (mma) |
1 |
| Bacteria |
|
|
3325 |
| |
Acidobacteria |
|
4 |
| |
|
Acidobacteria bacterium (aba) |
1 |
| |
|
Solibacter usitatus (sus) |
3 |
| |
Actinobacteria |
|
14 |
| |
|
Arthrobacter aurescens (aau) |
1 |
| |
|
Arthrobacter sp. FB24 (art) |
1 |
| |
|
Corynebacterium glutamicum R (cgt) |
1 |
| |
|
Clavibacter michiganensis (cmi) |
1 |
| |
|
Frankia sp. EAN1pec (fre) |
1 |
| |
|
Kineococcus radiotolerans (kra) |
1 |
| |
|
Mycobacterium smegmatis (msm) |
1 |
| |
|
Mycobacterium vanbaalenii (mva) |
1 |
| |
|
Nocardioides sp. JS614 (nca) |
1 |
| |
|
Nocardia farcinica (nfa) |
1 |
| |
|
Rhodococcus sp. RHA1 (rha) |
1 |
| |
|
Saccharopolyspora erythraea (sen) |
1 |
| |
|
Streptomyces avermitilis (sma) |
2 |
| |
Bacteroides |
|
21 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
2 |
| |
|
Bacteroides thetaiotaomicron (bth) |
3 |
| |
|
Bacteroides vulgatus (bvu) |
1 |
| |
|
Cytophaga hutchinsonii (chu) |
3 |
| |
|
Flavobacterium johnsoniae (fjo) |
3 |
| |
|
Flavobacterium psychrophilum (fps) |
1 |
| |
|
Gramella forsetii (gfo) |
5 |
| |
|
Porphyromonas gingivalis (pgi) |
1 |
| |
|
Salinibacter ruber (sru) |
2 |
| |
Chlamydia |
|
1 |
| |
|
Candidatus Protochlamydia amoebophila (pcu) |
1 |
| |
Cyanobacteria |
|
27 |
| |
|
Acaryochloris marina (amr) |
9 |
| |
|
Anabaena sp. PCC7120 (ana) |
4 |
| |
|
Anabaena variabilis (ava) |
3 |
| |
|
Prochlorococcus marinus MIT 9303 (pmf) |
1 |
| |
|
Synechococcus sp. CC9605 (syd) |
1 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
2 |
| |
|
Synechocystis sp. PCC6803 (syn) |
2 |
| |
|
Trichodesmium erythraeum (ter) |
5 |
| |
Deinococcus-Thermus |
|
1 |
| |
|
Deinococcus radiodurans (dra) |
1 |
| |
Firmicutes |
|
47 |
| |
|
Alkaliphilus oremlandii (aoe) |
3 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
4 |
| |
|
Bacillus pumilus (bpu) |
1 |
| |
|
Bacillus subtilis (bsu) |
2 |
| |
|
Clostridium acetobutylicum (cac) |
7 |
| |
|
Clostridium beijerinckii (cbe) |
1 |
| |
|
Clostridium botulinum F (cbf) |
1 |
| |
|
Clostridium difficile (cdf) |
2 |
| |
|
Clostridium phytofermentans (cpy) |
2 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
3 |
| |
|
Clostridium thermocellum (cth) |
4 |
| |
|
Desulfotomaculum reducens (drm) |
2 |
| |
|
Desulfitobacterium hafniense (dsy) |
1 |
| |
|
Geobacillus kaustophilus (gka) |
1 |
| |
|
Geobacillus thermodenitrificans (gtn) |
4 |
| |
|
Mycoplasma hyopneumoniae 232 (mhy) |
1 |
| |
|
Pediococcus pentosaceus (ppe) |
1 |
| |
|
Pelotomaculum thermopropionicum (pth) |
1 |
| |
|
Staphylococcus haemolyticus (sha) |
1 |
| |
|
Streptococcus pyogenes SSI-1 (serotype M3) (sps) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
1 |
| |
|
Syntrophomonas wolfei (swo) |
2 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
1 |
| |
Green nonsulfur bacteria |
|
7 |
| |
|
Dehalococcoides ethenogenes (det) |
2 |
| |
|
Herpetosiphon aurantiacus (hau) |
4 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
1 |
| |
Green sulfur bacteria |
|
12 |
| |
|
Chlorobium chlorochromatii (cch) |
2 |
| |
|
Chlorobium phaeobacteroides (cph) |
3 |
| |
|
Chlorobaculum tepidum (cte) |
3 |
| |
|
Pelodictyon luteolum (plt) |
2 |
| |
|
Prosthecochloris vibrioformis (pvi) |
2 |
| |
Hyperthermophilic bacteria |
|
3 |
| |
|
Aquifex aeolicus (aae) |
3 |
| |
Planctomyces |
|
3 |
| |
|
Rhodopirellula baltica (rba) |
3 |
| |
Proteobacteria |
|
3182 |
| |
|
Alcanivorax borkumensis (abo) |
10 |
| |
|
Arcobacter butzleri (abu) |
10 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
4 |
| |
|
Aeromonas hydrophila (aha) |
226 |
| |
|
Acidovorax sp. JS42 (ajs) |
2 |
| |
|
Actinobacillus pleuropneumoniae (apl) |
4 |
| |
|
Aeromonas salmonicida (asa) |
172 |
| |
|
Actinobacillus succinogenes (asu) |
3 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
6 |
| |
|
Azorhizobium caulinodans (azc) |
5 |
| |
|
Azoarcus sp. BH72 (azo) |
10 |
| |
|
Burkholderia cepacia (bam) |
4 |
| |
|
Buchnera aphidicola Sg (bas) |
1 |
| |
|
Bdellovibrio bacteriovorus (bba) |
2 |
| |
|
Bordetella bronchiseptica (bbr) |
2 |
| |
|
Bradyrhizobium sp. BTAi1 (bbt) |
2 |
| |
|
Burkholderia cenocepacia HI2424 (bch) |
1 |
| |
|
Brucella canis (bcs) |
1 |
| |
|
Bradyrhizobium japonicum (bja) |
1 |
| |
|
Burkholderia mallei ATCC 23344 (bma) |
1 |
| |
|
Burkholderia multivorans (bmu) |
5 |
| |
|
Brucella ovis (bov) |
1 |
| |
|
Bordetella petrii (bpt) |
2 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
1 |
| |
|
Burkholderia thailandensis (bte) |
4 |
| |
|
Buchnera aphidicola APS (buc) |
1 |
| |
|
Burkholderia sp. 383 (bur) |
1 |
| |
|
Burkholderia xenovorans (bxe) |
4 |
| |
|
Coxiella burnetii Dugway 7E9-12 (cbd) |
3 |
| |
|
Coxiella burnetii RSA 331 (cbs) |
1 |
| |
|
Campylobacter curvus (ccv) |
1 |
| |
|
Campylobacter hominis ATCC BAA-381 (cha) |
1 |
| |
|
Campylobacter jejuni NCTC11168 (cje) |
1 |
| |
|
Citrobacter koseri ATCC BAA-895 (cko) |
2 |
| |
|
Colwellia psychrerythraea (cps) |
162 |
| |
|
Chromohalobacter salexigens (csa) |
5 |
| |
|
Chromobacterium violaceum (cvi) |
3 |
| |
|
Delftia acidovorans (dac) |
1 |
| |
|
Dechloromonas aromatica (dar) |
8 |
| |
|
Desulfovibrio desulfuricans (dde) |
1 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
5 |
| |
|
Desulfotalea psychrophila (dps) |
18 |
| |
|
Dinoroseobacter shibae (dsh) |
4 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
2 |
| |
|
Azoarcus sp. EbN1 (eba) |
6 |
| |
|
Erwinia carotovora (eca) |
12 |
| |
|
Escherichia coli CFT073 (UPEC) (ecc) |
1 |
| |
|
Escherichia coli O157 EDL933 (EHEC) (ece) |
1 |
| |
|
Escherichia coli K-12 W3110 (ecj) |
2 |
| |
|
Escherichia coli K-12 MG1655 (eco) |
1 |
| |
|
Escherichia coli 536 (UPEC) (ecp) |
1 |
| |
|
Escherichia coli O157 Sakai (EHEC) (ecs) |
1 |
| |
|
Escherichia coli APEC O1 (ecv) |
4 |
| |
|
Escherichia coli E24377A (ecw) |
3 |
| |
|
Escherichia coli HS (ecx) |
3 |
| |
|
Enterobacter sp. 638 (ent) |
11 |
| |
|
Enterobacter sakazakii (esa) |
12 |
| |
|
Francisella tularensis subsp. novicida U112 (ftn) |
1 |
| |
|
Geobacter metallireducens (gme) |
11 |
| |
|
Geobacter sulfurreducens (gsu) |
1 |
| |
|
Geobacter uraniumreducens (gur) |
9 |
| |
|
Herminiimonas arsenicoxydans (har) |
3 |
| |
|
Hahella chejuensis (hch) |
61 |
| |
|
Haemophilus ducreyi (hdu) |
1 |
| |
|
Halorhodospira halophila (hha) |
4 |
| |
|
Haemophilus influenzae (serotype d) (hin) |
3 |
| |
|
Haemophilus influenzae PittGG (hiq) |
3 |
| |
|
Haemophilus somnus (hso) |
8 |
| |
|
Idiomarina loihiensis (ilo) |
32 |
| |
|
Jannaschia sp. CCS1 (jan) |
3 |
| |
|
Klebsiella pneumoniae (kpn) |
15 |
| |
|
Legionella pneumophila Corby (lpc) |
2 |
| |
|
Legionella pneumophila Philadelphia 1 (lpn) |
3 |
| |
|
Legionella pneumophila Paris (lpp) |
2 |
| |
|
Magnetospirillum magneticum (mag) |
6 |
| |
|
Marinobacter aquaeolei (maq) |
14 |
| |
|
Methylococcus capsulatus (mca) |
10 |
| |
|
Methylobacterium extorquens (mex) |
3 |
| |
|
Methylobacillus flagellatus (mfa) |
1 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
7 |
| |
|
Mesorhizobium loti (mlo) |
4 |
| |
|
Minibacterium massiliensis (mms) |
5 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
92 |
| |
|
Methylibium petroleiphilum (mpt) |
4 |
| |
|
Mannheimia succiniciproducens (msu) |
2 |
| |
|
Myxococcus xanthus (mxa) |
12 |
| |
|
Nitrosomonas eutropha (net) |
5 |
| |
|
Nitrosomonas europaea (neu) |
5 |
| |
|
Nitratiruptor sp. SB155-2 (nis) |
3 |
| |
|
Nitrosospira multiformis (nmu) |
4 |
| |
|
Nitrosococcus oceani (noc) |
21 |
| |
|
Ochrobactrum anthropi (oan) |
2 |
| |
|
Pseudomonas aeruginosa PAO1 (pae) |
1 |
| |
|
Pseudomonas aeruginosa PA7 (pap) |
2 |
| |
|
Psychrobacter arcticum (par) |
4 |
| |
|
Pseudoalteromonas atlantica (pat) |
98 |
| |
|
Pelobacter carbinolicus (pca) |
9 |
| |
|
Psychrobacter cryohalolentis (pcr) |
5 |
| |
|
Paracoccus denitrificans (pde) |
3 |
| |
|
Pseudomonas entomophila (pen) |
4 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
4 |
| |
|
Pseudomonas fluorescens PfO-1 (pfo) |
5 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
90 |
| |
|
Parvibaculum lavamentivorans (pla) |
2 |
| |
|
Photorhabdus luminescens (plu) |
13 |
| |
|
Pasteurella multocida (pmu) |
5 |
| |
|
Pseudomonas mendocina (pmy) |
16 |
| |
|
Polaromonas naphthalenivorans (pna) |
9 |
| |
|
Polynucleobacter sp. QLW-P1DMWA-1 (pnu) |
3 |
| |
|
Polaromonas sp. JS666 (pol) |
11 |
| |
|
Pelobacter propionicus (ppd) |
5 |
| |
|
Photobacterium profundum (ppr) |
311 |
| |
|
Pseudomonas putida KT2440 (ppu) |
2 |
| |
|
Psychrobacter sp. PRwf-1 (prw) |
3 |
| |
|
Pseudomonas stutzeri (psa) |
8 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
3 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
3 |
| |
|
Pseudomonas syringae pv. tomato DC3000 (pst) |
3 |
| |
|
Candidatus Pelagibacter ubique (pub) |
4 |
| |
|
Roseobacter denitrificans (rde) |
7 |
| |
|
Ralstonia eutropha H16 (reh) |
3 |
| |
|
Rhodoferax ferrireducens (rfr) |
19 |
| |
|
Rhizobium leguminosarum (rle) |
3 |
| |
|
Candidatus Ruthia magnifica (rma) |
2 |
| |
|
Ralstonia metallidurans (rme) |
2 |
| |
|
Rickettsia massiliae (rms) |
1 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
2 |
| |
|
Rhodopseudomonas palustris HaA2 (rpb) |
1 |
| |
|
Rhodopseudomonas palustris BisA53 (rpe) |
1 |
| |
|
Rhodospirillum rubrum (rru) |
3 |
| |
|
Ralstonia solanacearum (rso) |
3 |
| |
|
Sphingopyxis alaskensis (sal) |
1 |
| |
|
Syntrophus aciditrophicus (sat) |
8 |
| |
|
Shewanella amazonensis (saz) |
33 |
| |
|
Shewanella baltica OS155 (sbl) |
12 |
| |
|
Shewanella baltica OS185 (sbm) |
7 |
| |
|
Shewanella baltica OS195 (sbn) |
33 |
| |
|
Shigella boydii (sbo) |
1 |
| |
|
Sorangium cellulosum (scl) |
12 |
| |
|
Saccharophagus degradans (sde) |
42 |
| |
|
Shewanella denitrificans (sdn) |
36 |
| |
|
Shigella dysenteriae (sdy) |
4 |
| |
|
Salmonella enterica serovar Choleraesuis (sec) |
2 |
| |
|
Salmonella enterica subsp. arizonae (ses) |
4 |
| |
|
Shewanella frigidimarina (sfr) |
88 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
6 |
| |
|
Sodalis glossinidius (sgl) |
5 |
| |
|
Shewanella sp. MR-4 (she) |
3 |
| |
|
Shewanella sp. MR-7 (shm) |
16 |
| |
|
Shewanella sp. ANA-3 (shn) |
28 |
| |
|
Shewanella sp. W3-18-1 (shw) |
26 |
| |
|
Silicibacter pomeroyi (sil) |
5 |
| |
|
Silicibacter sp. TM1040 (sit) |
1 |
| |
|
Shewanella loihica (slo) |
60 |
| |
|
Sinorhizobium medicae (smd) |
2 |
| |
|
Sinorhizobium meliloti (sme) |
2 |
| |
|
Shewanella oneidensis (son) |
24 |
| |
|
Shewanella putrefaciens (spc) |
8 |
| |
|
Serratia proteamaculans (spe) |
30 |
| |
|
Shewanella pealeana (spl) |
66 |
| |
|
Salmonella enterica serovar Paratyphi B (spq) |
3 |
| |
|
Shewanella sediminis (sse) |
94 |
| |
|
Shigella sonnei (ssn) |
6 |
| |
|
Salmonella typhimurium LT2 (stm) |
2 |
| |
|
Salmonella enterica serovar Typhi Ty2 (stt) |
1 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
17 |
| |
|
Thiobacillus denitrificans (tbd) |
4 |
| |
|
Thiomicrospira crunogena (tcx) |
31 |
| |
|
Thiomicrospira denitrificans (tdn) |
11 |
| |
|
Vibrio cholerae O1 (vch) |
18 |
| |
|
Vibrio cholerae O395 (vco) |
66 |
| |
|
Verminephrobacter eiseniae (vei) |
1 |
| |
|
Vibrio fischeri (vfi) |
163 |
| |
|
Vibrio harveyi (vha) |
118 |
| |
|
Candidatus Vesicomyosocius okutanii (vok) |
2 |
| |
|
Vibrio parahaemolyticus (vpa) |
124 |
| |
|
Vibrio vulnificus CMCP6 (vvu) |
29 |
| |
|
Vibrio vulnificus YJ016 (vvy) |
88 |
| |
|
Wolinella succinogenes (wsu) |
4 |
| |
|
Xanthomonas axonopodis (xac) |
2 |
| |
|
Xanthobacter autotrophicus (xau) |
1 |
| |
|
Xanthomonas campestris pv. campestris 8004 (xcb) |
1 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
| |
|
Yersinia enterocolitica (yen) |
13 |
| |
|
Yersinia pestis Antiqua (ypa) |
1 |
| |
|
Yersinia pestis Angola (ypg) |
1 |
| |
|
Yersinia pseudotuberculosis IP31758 (ypi) |
7 |
| |
|
Yersinia pestis KIM (ypk) |
1 |
| |
|
Yersinia pestis Nepal516 (ypn) |
4 |
| |
|
Yersinia pestis Pestoides (ypp) |
2 |
| |
|
Yersinia pseudotuberculosis IP32953 (yps) |
4 |
| |
Spirochete |
|
3 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
1 |
| |
|
Leptospira interrogans serovar lai (lil) |
1 |
| Eukaryotes |
|
|
13 |
| |
Animals |
|
4 |
| |
|
Danio rerio (zebrafish) (dre) |
1 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
2 |
| |
|
Strongylocentrotus purpuratus (purple sea urchin) (spu) |
1 |
| |
Plants |
|
2 |
| |
|
Oryza sativa japonica (Japanese rice) (osa) |
2 |
| |
Protists |
|
7 |
| |
|
Plasmodium falciparum (pfa) |
3 |
| |
|
Trypanosoma cruzi (tcr) |
2 |
| |
|
Trichomonas vaginalis (tva) |
2 |
| NULL |
|
|
178 |
| TOTAL |
|
|
3545 |
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}