CDbIndex Class Reference

Search Toolkit Book for CDbIndex

#include <dbindex.hpp>

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List of all members.

Detailed Description

Base class providing high level interface to index objects.

Definition at line 221 of file dbindex.hpp.

Public Types

typedef CSequenceIStream::TStreamPos TSeqNum
 Type used to enumerate sequences in the index.
typedef Uint4 TWord
 Type representing main memory unit of the index structure.
typedef SOffsetValue TOffsetValue
typedef CSubjectMap TSubjectMap

Public Member Functions

CConstRef< CSearchResults > Search (const BLAST_SequenceBlk *query, const BlastSeqLoc *locs, const SSearchOptions &search_options)
 Search the index.
virtual ~CDbIndex ()
 Index object destructor.
TSeqNum StartSeq () const
 Get the OID of the first sequence in the index.
TSeqNum StartChunk () const
 Get the number of the first chunk of the first sequence in the index.
TSeqNum StopSeq () const
 Get the OID of the last sequence in the index.
TSeqNum StopChunk () const
 Get the number of the last chunk of the last sequence in the index.
virtual TSeqPos GetSeqLen (TSeqNum oid) const
 Get the length of the subject sequence.
virtual const Uint1 * GetSeqData (TSeqNum oid) const
 Get the sequence data of the subject sequence.
virtual void Remap ()
 If possible reduce the index footpring by unmapping the portion that does not contain sequence data.
TSeqNum getStartOId () const
TSeqNum getStopOId () const
TSeqNum getSIdByOId (TSeqNum oid) const
TSeqNum getOIdBySId (TSeqNum sid) const
unsigned long getHKeyWidth () const
unsigned long getStride () const
unsigned long getWSHint () const
unsigned long getMaxChunkSize () const
unsigned long getChunkOverlap () const
bool isLegacy () const
TWord getSubjectLength (TSeqNum sid) const
TSeqNum getCId (TSeqNum sid, TSeqNum rcid) const
TSeqNum getCId (TSeqNum sid) const
pair< TSeqNum, TSeqNum > getSRCId (TSeqNum cid) const
TSeqNum getSIdByCId (TSeqNum cid) const
TWord getChunkLength (TSeqNum cid) const
TWord getChunkLength (TSeqNum sid, TSeqNum rcid) const
TSeqNum getCIdByLRCId (TSeqNum lid, TSeqNum rcid) const
TSeqNum getSIdByLRCId (TSeqNum lid, TSeqNum rcid) const
pair< TSeqNum, TSeqPos > getRCIdOffByLIdOff (TSeqNum lid, TSeqPos loff) const
pair< TSeqNum, TSeqPos > getCIdOffByLIdOff (TSeqNum lid, TSeqPos loff) const
TSeqPos getSOff (TSeqNum sid, TSeqNum rcid, TSeqPos coff) const
pair< TSeqNum, TSeqPos > getSIdOffByCIdOff (TSeqNum cid, TSeqPos coff) const
pair< TSeqNum, TSeqPos > getSIdOffByLIdOff (TSeqNum lid, TSeqPos loff) const
TSeqNum getNumSubjects () const
TSeqNum getNumChunks () const
TSeqNum getNumChunks (TSeqNum sid) const
const Uint1 * getSeqData (TSeqNum sid) const
TSeqNum getLId (const TOffsetValue &v) const
TSeqPos getLOff (const TOffsetValue &v) const
const string getBioseqIdBySId (TSeqNum sid) const
const vector< string > & getIdMap () const

Static Public Member Functions

static SOptions DefaultSOptions ()
 Creates an SOptions instance initialized with default values.
static void MakeIndex (const std::string &fname, const std::string &oname, TSeqNum start, TSeqNum start_chunk, TSeqNum &stop, TSeqNum &stop_chunk, const SOptions &options)
 Create an index object.
static void MakeIndex (const std::string &fname, const std::string &oname, TSeqNum start, TSeqNum &stop, TSeqNum &stop_chunk, const SOptions &options)
 Create an index object.
static void MakeIndex (const std::string &fname, const std::string &oname, TSeqNum start, TSeqNum &stop, const SOptions &options)
 Create an index object.
static void MakeIndex (CSequenceIStream &input, const std::string &oname, TSeqNum start, TSeqNum start_chunk, TSeqNum &stop, TSeqNum &stop_chunk, const SOptions &options)
 Create an index object.
static void MakeIndex (CSequenceIStream &input, const std::string &oname, TSeqNum start, TSeqNum &stop, TSeqNum &stop_chunk, const SOptions &options)
 Create an index object.
static void MakeIndex (CSequenceIStream &input, const std::string &oname, TSeqNum start, TSeqNum &stop, const SOptions &options)
 Create an index object.
static CRef< CDbIndex > Load (const std::string &fname, bool nomap=false)
 Load index.

Static Public Attributes

static const unsigned long CR = 4
 Letters per byte in the sequence store.
static const unsigned long STRIDE = 5
 Only process every STRIDEth nmer.
static const unsigned long MIN_OFFSET = 64
 Offsets below this are reserved for special purposes.
static const unsigned long CODE_BITS = 3
 How many bits are used for special codes for first/last nmers.
static const unsigned char VERSION = (unsigned char)5
 Index version that this library handles.

Protected Attributes

TSeqNum start_
 OID of the first sequence in the index.
TSeqNum start_chunk_
 Number of the first chunk of the first sequence.
TSeqNum stop_
 OID of the last sequence in the inex.
TSeqNum stop_chunk_
 Number of the last chunk of the last sequence.
SIndexHeader header_
 The index header structure.
TSubjectMap * subject_map_
 The subject map object.
vector< string > idmap_
 Mapping from source ids to bioseq ids.

Private Member Functions

virtual CConstRef< CSearchResults > DoSearch (const BLAST_SequenceBlk *, const BlastSeqLoc *, const SSearchOptions &)
 Actual implementation of seed searching.

Static Private Member Functions

static CRef< CDbIndex > LoadIndex (CNcbiIstream &is)
 Load index from an open stream.
template<bool LEGACY>
static CRef< CDbIndex > LoadIndex (const std::string &fname, bool nomap=false)
 Load index from a named file.

Classes

class  CSearchResults
 This class represents a set of seeds obtained by searching all subjects represented by the index. More...
struct  SOffsetValue
struct  SOptions
 Simple record type used to specify index creation parameters. More...
struct  SSearchOptions
 Simple record type used to specify index search parameters. More...

Member Typedef Documentation

typedef SOffsetValue CDbIndex::TOffsetValue
 

Definition at line 652 of file dbindex.hpp.

typedef CSequenceIStream::TStreamPos CDbIndex::TSeqNum
 

Type used to enumerate sequences in the index.

Definition at line 271 of file dbindex.hpp.

typedef CSubjectMap CDbIndex::TSubjectMap
 

Reimplemented in CDbIndex_Impl< LEGACY >.

Definition at line 654 of file dbindex.hpp.

typedef Uint4 CDbIndex::TWord
 

Type representing main memory unit of the index structure.

Definition at line 274 of file dbindex.hpp.

Constructor & Destructor Documentation

virtual CDbIndex::~CDbIndex (   )  [inline, virtual]
 

Index object destructor.

Definition at line 557 of file dbindex.hpp.

Member Function Documentation

CDbIndex::SOptions CDbIndex::DefaultSOptions (   )  [static]
 

Creates an SOptions instance initialized with default values.

Returns:
instance of SOptions filled with default option values

Definition at line 144 of file dbindex.cpp.

References DBSEQ_CHUNK_OVERLAP, MAX_DBSEQ_LEN, REPORT_NORMAL, and STRIDE.

Referenced by CMkIndexApplication::Run().

virtual CConstRef< CSearchResults > CDbIndex::DoSearch (  const BLAST_SequenceBlk *  ,
const BlastSeqLoc *  ,
const SSearchOptions & 
)  [inline, private, virtual]
 

Actual implementation of seed searching.

Must be implemented by child classes.

See also:
Search

Definition at line 638 of file dbindex.hpp.

References null.

const string CDbIndex::getBioseqIdBySId (  TSeqNum  sid  )  const [inline]
 

Definition at line 722 of file dbindex.hpp.

TWord CDbIndex::getChunkLength (  TSeqNum  sid,
TSeqNum  rcid
)  const [inline]
 

Definition at line 686 of file dbindex.hpp.

CDbIndex::TWord CDbIndex::getChunkLength (  TSeqNum  cid  )  const [inline]
 

Definition at line 1187 of file dbindex.hpp.

References CSubjectMap::getChunkLength(), and subject_map_.

unsigned long CDbIndex::getChunkOverlap (   )  const [inline]
 

Definition at line 676 of file dbindex.hpp.

TSeqNum CDbIndex::getCId (  TSeqNum  sid  )  const [inline]
 

Definition at line 682 of file dbindex.hpp.

CDbIndex::TSeqNum CDbIndex::getCId (  TSeqNum  sid,
TSeqNum  rcid
)  const [inline]
 

Definition at line 1180 of file dbindex.hpp.

References CSubjectMap::getCId(), and subject_map_.

CDbIndex::TSeqNum CDbIndex::getCIdByLRCId (  TSeqNum  lid,
TSeqNum  rcid
)  const [inline]
 

Definition at line 1191 of file dbindex.hpp.

References CSubjectMap::getCIdByLRCId(), and subject_map_.

pair< TSeqNum, TSeqPos > CDbIndex::getCIdOffByLIdOff (  TSeqNum  lid,
TSeqPos  loff
)  const [inline]
 

Definition at line 693 of file dbindex.hpp.

unsigned long CDbIndex::getHKeyWidth (   )  const [inline]
 

Definition at line 671 of file dbindex.hpp.

const vector< string >& CDbIndex::getIdMap (   )  const [inline]
 

Definition at line 728 of file dbindex.hpp.

CDbIndex::TSeqNum CDbIndex::getLId (  const TOffsetValue &  v  )  const [inline]
 

Definition at line 1214 of file dbindex.hpp.

References CSubjectMap::getLId(), and subject_map_.

TSeqPos CDbIndex::getLOff (  const TOffsetValue &  v  )  const [inline]
 

Definition at line 1218 of file dbindex.hpp.

References CSubjectMap::getLOff(), and subject_map_.

unsigned long CDbIndex::getMaxChunkSize (   )  const [inline]
 

Definition at line 675 of file dbindex.hpp.

CDbIndex::TSeqNum CDbIndex::getNumChunks (  TSeqNum  sid  )  const [inline]
 

Definition at line 1208 of file dbindex.hpp.

References CSubjectMap::getNumChunks(), and subject_map_.

CDbIndex::TSeqNum CDbIndex::getNumChunks (   )  const [inline]
 

Definition at line 1205 of file dbindex.hpp.

References CSubjectMap::getNumChunks(), and subject_map_.

CDbIndex::TSeqNum CDbIndex::getNumSubjects (   )  const [inline]
 

Definition at line 1202 of file dbindex.hpp.

References CSubjectMap::getNumSubjects(), and subject_map_.

TSeqNum CDbIndex::getOIdBySId (  TSeqNum  sid  )  const [inline]
 

Definition at line 665 of file dbindex.hpp.

References ASSERT.

pair< CDbIndex::TSeqNum, TSeqPos > CDbIndex::getRCIdOffByLIdOff (  TSeqNum  lid,
TSeqPos  loff
)  const [inline]
 

Definition at line 1195 of file dbindex.hpp.

References CSubjectMap::getRCIdOffByLIdOff(), and subject_map_.

const Uint1 * CDbIndex::getSeqData (  TSeqNum  sid  )  const [inline]
 

Definition at line 1211 of file dbindex.hpp.

References CSubjectMap::getSeqData(), and subject_map_.

virtual const Uint1* CDbIndex::GetSeqData (  TSeqNum  oid  )  const [inline, virtual]
 

Get the sequence data of the subject sequence.

Parameters:
oid Ordinal id of the subject sequence.
Returns:
Pointer to the sequence data.

Definition at line 601 of file dbindex.hpp.

References NCBI_THROW.

virtual TSeqPos CDbIndex::GetSeqLen (  TSeqNum  oid  )  const [inline, virtual]
 

Get the length of the subject sequence.

Parameters:
oid Ordinal id of the subject sequence.
Returns:
Length of the sequence in bases.

Definition at line 587 of file dbindex.hpp.

References NCBI_THROW.

TSeqNum CDbIndex::getSIdByCId (  TSeqNum  cid  )  const [inline]
 

Definition at line 684 of file dbindex.hpp.

TSeqNum CDbIndex::getSIdByLRCId (  TSeqNum  lid,
TSeqNum  rcid
)  const [inline]
 

Definition at line 689 of file dbindex.hpp.

TSeqNum CDbIndex::getSIdByOId (  TSeqNum  oid  )  const [inline]
 

Definition at line 659 of file dbindex.hpp.

References ASSERT.

pair< TSeqNum, TSeqPos > CDbIndex::getSIdOffByCIdOff (  TSeqNum  cid,
TSeqPos  coff
)  const [inline]
 

Definition at line 701 of file dbindex.hpp.

pair< TSeqNum, TSeqPos > CDbIndex::getSIdOffByLIdOff (  TSeqNum  lid,
TSeqPos  loff
)  const [inline]
 

Definition at line 707 of file dbindex.hpp.

TSeqPos CDbIndex::getSOff (  TSeqNum  sid,
TSeqNum  rcid,
TSeqPos  coff
)  const [inline]
 

Definition at line 1198 of file dbindex.hpp.

References CSubjectMap::getSOff(), and subject_map_.

pair< CDbIndex::TSeqNum, CDbIndex::TSeqNum > CDbIndex::getSRCId (  TSeqNum  cid  )  const [inline]
 

Definition at line 1184 of file dbindex.hpp.

References CSubjectMap::getSRCId(), and subject_map_.

TSeqNum CDbIndex::getStartOId (   )  const [inline]
 

Definition at line 656 of file dbindex.hpp.

TSeqNum CDbIndex::getStopOId (   )  const [inline]
 

Definition at line 657 of file dbindex.hpp.

unsigned long CDbIndex::getStride (   )  const [inline]
 

Definition at line 672 of file dbindex.hpp.

CDbIndex::TWord CDbIndex::getSubjectLength (  TSeqNum  sid  )  const [inline]
 

Definition at line 1176 of file dbindex.hpp.

References CSubjectMap::getSubjectLength(), and subject_map_.

unsigned long CDbIndex::getWSHint (   )  const [inline]
 

Definition at line 673 of file dbindex.hpp.

bool CDbIndex::isLegacy (   )  const [inline]
 

Definition at line 678 of file dbindex.hpp.

CRef< CDbIndex > CDbIndex::Load (  const std::string &  fname,
bool  nomap = false
)  [static]
 

Load index.

Parameters:
fname [I] file containing index data
Returns:
CRef to the loaded index

Definition at line 176 of file dbindex.cpp.

References GetIndexVersion(), NCBI_THROW, and VERSION.

Referenced by CIndexedDb::PreSearch(), CSRSearchApplication::Run(), and CIndexedDb::SetNumThreads().

template<bool LEGACY>
CRef< CDbIndex > CDbIndex::LoadIndex (  const std::string &  fname,
bool  nomap = false
)  [static, private]
 

Load index from a named file.

Usually this is used to memmap() the file data into the index structure.

Parameters:
fname [I] index file name
nomap [I] if 'true', then read the the file instead of mmap()'ing it
Returns:
object containing loaded index data

Definition at line 553 of file dbindex_sp.hpp.

References ERR_POST, CMemoryFile::GetPtr(), MapFile(), NCBI_THROW, null, and CRef< C, Locker >::Reset().

static CRef< CDbIndex > CDbIndex::LoadIndex (  CNcbiIstream &  is  )  [static, private]
 

Load index from an open stream.

Parameters:
is [I] stream containing index data
Returns:
object containing loaded index data

void CDbIndex::MakeIndex (  CSequenceIStream &  input,
const std::string &  oname,
TSeqNum  start,
TSeqNum &  stop,
const SOptions &  options
)  [static]
 

Create an index object.

This function is the same as CDbIndex::MakeIndex( input, start, stop, stop_chunk, options ) except that it does not need stop_chunk parameter and can only be used to create indices containing whole sequences.

Definition at line 1800 of file dbindex_factory.cpp.

References input(), and MakeIndex().

static void CDbIndex::MakeIndex (  CSequenceIStream &  input,
const std::string &  oname,
TSeqNum  start,
TSeqNum &  stop,
TSeqNum &  stop_chunk,
const SOptions &  options
)  [inline, static]
 

Create an index object.

This function is the same as CDbIndex::MakeIndex( input, start, start_chunk, stop, stop_chunk, options ) with start_chunk set to 0.

Definition at line 514 of file dbindex.hpp.

References input().

void CDbIndex::MakeIndex (  CSequenceIStream &  input,
const std::string &  oname,
TSeqNum  start,
TSeqNum  start_chunk,
TSeqNum &  stop,
TSeqNum &  stop_chunk,
const SOptions &  options
)  [static]
 

Create an index object.

Creates an instance of CDbIndex using a given stream as input.

Parameters:
input [I] stream for reading sequence and mask information
oname [I] output file name
start [I] number of the first sequence in the index
start_chunk [I] number of the first chunk at which the starting sequence should be processed
stop [I/O] number of the last sequence in the index; returns the number of the actual last sequece stored
stop_chunk [I/O] number of the last chunk of the last sequence in the index
options [I] index creation parameters

Definition at line 1789 of file dbindex_factory.cpp.

References input().

void CDbIndex::MakeIndex (  const std::string &  fname,
const std::string &  oname,
TSeqNum  start,
TSeqNum &  stop,
const SOptions &  options
)  [static]
 

Create an index object.

This function is the same as CDbIndex::MakeIndex( fname, start, stop, stop_chunk, options ) except that it does not need stop_chunk parameter and can only be used to create indices containing whole sequences.

Definition at line 1780 of file dbindex_factory.cpp.

References MakeIndex().

static void CDbIndex::MakeIndex (  const std::string &  fname,
const std::string &  oname,
TSeqNum  start,
TSeqNum &  stop,
TSeqNum &  stop_chunk,
const SOptions &  options
)  [inline, static]
 

Create an index object.

This function is the same as CDbIndex::MakeIndex( fname, start, start_chunk, stop, stop_chunk, options ) with start_chunk set to 0.

Definition at line 462 of file dbindex.hpp.

void CDbIndex::MakeIndex (  const std::string &  fname,
const std::string &  oname,
TSeqNum  start,
TSeqNum  start_chunk,
TSeqNum &  stop,
TSeqNum &  stop_chunk,
const SOptions &  options
)  [static]
 

Create an index object.

Creates an instance of CDbIndex using the named resource as input. The name of the resource is given by the fname parameter.

Parameters:
fname [I] input file name
oname [I] output file name
start [I] number of the first sequence in the index
start_chunk [I] number of the first chunk at which the starting sequence should be processed
stop [I/O] number of the last sequence in the index; returns the number of the actual last sequece stored
stop_chunk [I/O] number of the last chunk of the last sequence in the index
options [I] index creation parameters

Definition at line 1766 of file dbindex_factory.cpp.

References input().

Referenced by MakeIndex(), and CMkIndexApplication::Run().

virtual void CDbIndex::Remap (   )  [inline, virtual]
 

If possible reduce the index footpring by unmapping the portion that does not contain sequence data.

Reimplemented in CDbIndex_Impl< LEGACY >.

Definition at line 612 of file dbindex.hpp.

CConstRef< CDbIndex::CSearchResults > CDbIndex::Search (  const BLAST_SequenceBlk *  query,
const BlastSeqLoc *  locs,
const SSearchOptions &  search_options
) 
 

Search the index.

Parameters:
query [I] the query sequence in BLASTNA format
locs [I] which parts of the query to search
search_options [I] search parameters

Definition at line 1396 of file dbindex_search.cpp.

References header_, SIndexHeader::legacy_, query, and CDbIndex::SSearchOptions::two_hits.

TSeqNum CDbIndex::StartChunk (   )  const [inline]
 

Get the number of the first chunk of the first sequence in the index.

Returns:
the number of the first sequence chunk in the index

Definition at line 568 of file dbindex.hpp.

TSeqNum CDbIndex::StartSeq (   )  const [inline]
 

Get the OID of the first sequence in the index.

Returns:
OID of the first sequence in the index

Definition at line 562 of file dbindex.hpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::operator()().

TSeqNum CDbIndex::StopChunk (   )  const [inline]
 

Get the number of the last chunk of the last sequence in the index.

Returns:
the number of the last sequence chunk in the index

Definition at line 579 of file dbindex.hpp.

TSeqNum CDbIndex::StopSeq (   )  const [inline]
 

Get the OID of the last sequence in the index.

Returns:
OID of the last sequence in the index

Definition at line 573 of file dbindex.hpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::operator()().

Member Data Documentation

const unsigned long CDbIndex::CODE_BITS = 3 [static]
 

How many bits are used for special codes for first/last nmers.

See comment to MIN_OFFSET.

Definition at line 247 of file dbindex.hpp.

const unsigned long CDbIndex::CR = 4 [static]
 

Letters per byte in the sequence store.

Sequence data is stored in the index packed 4 bases per byte.

Definition at line 228 of file dbindex.hpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::ExtendLeft(), CSearch_Base< LEGACY, NHITS, derived_t >::ExtendRight(), CSubjectMap::getRCIdOffByLIdOff(), and CSubjectMap::MapSubjOff().

SIndexHeader CDbIndex::header_ [protected]
 

The index header structure.

Definition at line 737 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl(), and Search().

vector< string > CDbIndex::idmap_ [protected]
 

Mapping from source ids to bioseq ids.

Definition at line 739 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl().

const unsigned long CDbIndex::MIN_OFFSET = 64 [static]
 

Offsets below this are reserved for special purposes.

Bits 0-2 of such an offset represent the distance from the start of the Nmer to the next invalid base to the left of the Nmer. Bits 3-5 represent the distance from the end of the Nmer to the next invalid base to the right of the Nmer.

Definition at line 242 of file dbindex.hpp.

TSeqNum CDbIndex::start_ [protected]
 

OID of the first sequence in the index.

Definition at line 732 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl(), CDbIndex::CSearchResults::CheckResults(), CDbIndex::CSearchResults::GetResults(), and CDbIndex_Impl< LEGACY >::Remap().

TSeqNum CDbIndex::start_chunk_ [protected]
 

Number of the first chunk of the first sequence.

Definition at line 733 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl().

TSeqNum CDbIndex::stop_ [protected]
 

OID of the last sequence in the inex.

Definition at line 734 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl(), and CDbIndex_Impl< LEGACY >::Remap().

TSeqNum CDbIndex::stop_chunk_ [protected]
 

Number of the last chunk of the last sequence.

Definition at line 735 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl().

const unsigned long CDbIndex::STRIDE = 5 [static]
 

Only process every STRIDEth nmer.

STRIDE value of 5 allows for search of contiguous seeds of length >= 16.

Definition at line 234 of file dbindex.hpp.

Referenced by DefaultSOptions().

TSubjectMap* CDbIndex::subject_map_ [protected]
 

The subject map object.

Definition at line 738 of file dbindex.hpp.

Referenced by CDbIndex_Impl< LEGACY >::CDbIndex_Impl(), CDbIndex_Impl< LEGACY >::DecodeOffset(), getChunkLength(), getCId(), getCIdByLRCId(), getLId(), getLOff(), getNumChunks(), getNumSubjects(), getRCIdOffByLIdOff(), CDbIndex_Impl< LEGACY >::GetSeqData(), getSeqData(), CDbIndex_Impl< LEGACY >::GetSeqLen(), CDbIndex_Impl< LEGACY >::GetSeqStoreBase(), getSOff(), getSRCId(), getSubjectLength(), CDbIndex_Impl< LEGACY >::GetSubjectMap(), CDbIndex_Impl< LEGACY >::NumChunks(), CDbIndex_Impl< LEGACY >::NumSubjects(), CDbIndex_Impl< LEGACY >::Remap(), and CDbIndex_Impl< LEGACY >::~CDbIndex_Impl().

const unsigned char CDbIndex::VERSION = (unsigned char)5 [static]
 

Index version that this library handles.

Definition at line 250 of file dbindex.hpp.

Referenced by Load(), and CDbIndex_Factory::SaveHeader().

The documentation for this class was generated from the following files:
Generated on Mon Feb 9 10:45:36 2009 for NCBI C++ ToolKit by  doxygen 1.4.6
Modified on Mon Feb 09 14:48:30 2009 by modify_doxy.py rev. 117643