Ureaplasma urealyticum selected proteins: Conserved Hypothetical, Hypothetical or Uu- specific hypotheticals.
|
UU gene ID 1 |
Repeat Coords. 2 |
Unit Sequence 3 |
Num. Units 4 |
Predicted Function 5 |
|
|
UU008 |
5943..5960 |
TAAAGC |
3 |
HP6 |
|
|
UU012 |
10479..10468 |
TGA |
4 |
CHP7 (possible TmpC-related membrane lipoprotein) |
|
|
UU012 |
10035..10029 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU012 |
9956..9950 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU012 |
9794..9788 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
16765..16754 |
AATG |
3 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
17381..17375 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
16765..16754 |
AATG |
3 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
17363..17357 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
16665..16659 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
16126..16120 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU016 |
15836..15830 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU024 |
25311..25304 |
CATT |
2 |
UU8-specific CHP |
|
|
UU024 |
24925..24918 |
TATG |
2 |
UU-specific CHP |
|
|
UU024 |
24911..24903 |
ATTT |
2.25 |
UU-specific CHP |
|
|
UU024 |
24863..24855 |
ATTT |
2.25 |
UU-specific CHP |
|
|
UU024 |
24842..24835 |
CAAA |
2 |
UU-specific CHP |
|
|
UU024 |
24638..24631 |
ATTT |
2 |
UU-specific CHP |
|
|
UU028 |
29746..29739 |
A |
8 |
HP |
|
|
UU029 |
30366..30359 |
A |
8 |
CHP (possible TEX protein) |
|
|
UU030 |
32014..32021 |
T |
8 |
CHP |
|
|
UU030 |
33380..33384 |
G |
5 |
CHP |
|
|
UU036 |
38805..38798 |
A |
8 |
CHP (possible methyltransferase) |
|
|
UU036 |
38916..38909 |
A |
8 |
CHP (possible methyltransferase) |
|
|
UU036 |
39197..39190 |
A |
8 |
CHP (possible methyltransferase) |
|
|
UU037 |
39685..39678 |
A |
8 |
HP |
|
|
UU043 |
45392..45398 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
45657..45663 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
45972..45978 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
46511..46517 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
46782..46788 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
47177..47183 |
T |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU043 |
47261..47267 |
T |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU044 |
48421..48425 |
C |
5 |
CHP |
|
|
UU045 |
50233..50240 |
A |
8 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
50526..50532 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
50635..50641 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
50884..50891 |
A |
8 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
51694..51700 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
51939..51947 |
TAA |
3 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
52119..52127 |
TGA |
3 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
52513..52521 |
GCT |
3 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
52722..52731 |
TAA |
3 |
CHP (possible membrane lipoprotein) |
|
|
UU045 |
52454..52460 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU046 |
53260..53278 |
CCACAA |
3.16 |
HP |
|
|
UU046 |
53353..53357 |
C |
5 |
HP |
|
|
UU047 |
55883..55887 |
G |
5 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55299..55306 |
A |
8 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
57456..57460 |
G |
5 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55396..55407 |
AATT |
3 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55664..55671 |
A |
8 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55210..55218 |
TGTT |
2.25 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55561..55568 |
TAAC |
2 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55692..55698 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
55926..55932 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU047 |
57487..57493 |
A |
7 |
CHP (possible membrane lipoprotein) |
|
|
UU048 |
58422..58427 |
C |
6 |
HP |
|
|
UU048 |
59274..59281 |
A |
8 |
HP / HP |
|
|
UU049 |
59464..59471 |
A |
8 |
HP |
|
|
UU050 |
59813..59820 |
A |
8 |
HP |
|
|
UU051 |
60975..60982 |
A |
8 |
HP |
|
|
UU052 |
61310..61317 |
A |
8 |
HP |
|
|
UU052 |
62098..62102 |
C |
5 |
HP |
|
|
UU064 |
80083..80076 |
T |
8 |
HP |
|
|
UU067 |
83390..83384 |
A |
7 |
HP (possible regulatory protein) |
|
|
UU067 |
83277..83271 |
T |
7 |
HP (possible regulatory protein) |
|
|
UU071 |
87929..87922 |
A |
8 |
HP |
|
|
UU071 |
88095..88084 |
AATT |
3 |
HP |
|
|
UU071 |
88319..88312 |
A |
8 |
HP |
|
|
UU072 |
89453..89460 |
A |
8 |
CHP (hemolysin homolog) |
|
|
UU072 |
88746..88752 |
T |
7 |
CHP (hemolysin homolog) |
|
|
UU072 |
89593..89601 |
TTG |
3 |
CHP (hemolysin homolog) |
|
|
UU072 |
89614..89620 |
A |
7 |
CHP (hemolysin homolog) |
|
|
UU072 |
89947..89953 |
A |
7 |
CHP (hemolysin homolog) |
|
|
UU073 |
90206..90198 |
A |
9 |
CHP |
|
|
UU077 |
94141..94134 |
A |
8 |
CHP (probable PP-loop ATPase) |
|
|
UU085 |
103496..103503 |
A |
8 |
CHP |
|
|
UU085 |
103974..103981 |
A |
8 |
CHP |
|
|
UU088 |
107590..107597 |
A |
8 |
CHP |
|
|
UU092 |
112840..112847 |
A |
8 |
UU-specific CHP |
|
|
UU103 |
130554..130561 |
A |
8 |
HP |
|
|
UU103 |
131321..131328 |
A |
8 |
HP |
|
|
UU103 |
131343..131354 |
ATTA |
3 |
HP |
|
|
UU103 (130540..132204)/
|
132200..132211 |
AAT |
4 |
HP |
|
|
UU112 |
143111..143118 |
A |
8 |
HP |
|
|
UU112 |
143388..143395 |
A |
8 |
HP |
|
|
UU125 |
165683..165676 |
A |
8 |
CHP |
|
|
UU125 |
165368..165349 |
AAAGAA |
3.33 |
CHP |
|
|
UU126 |
166495..166488 |
A |
8 |
CHP |
|
|
UU126 |
166677..166664 |
ATG |
4.66 |
CHP |
|
|
UU126 |
167267..167260 |
A |
8 |
CHP |
|
|
UU126 |
167845..167838 |
A |
8 |
CHP |
|
|
UU126 |
168479..168472 |
A |
8 |
CHP |
|
|
UU126 |
168948..168940 |
A |
9 |
CHP |
|
|
UU143 |
186573..186566 |
A |
8 |
CHP |
|
|
UU143 |
184427..184423 |
G |
5 |
CHP |
|
|
UU143 |
187799..187795 |
C |
5 |
CHP |
|
|
UU149 |
191199..191210 |
AAAG |
3 |
HP |
|
|
UU173 |
213351..213343 |
A |
9 |
CHP |
|
|
UU173 |
213574..213567 |
T |
8 |
CHP |
|
|
UU177 |
216686..216694 |
A |
9 |
CHP |
|
|
UU177 |
216839..216846 |
T |
8 |
CHP |
|
|
UU183 |
221298..221305 |
A |
8 |
HP |
|
|
UU183 |
221609..221616 |
A |
8 |
HP |
|
|
UU189 |
234170..234177 |
A |
8 |
UU-specific CHP (MBA paralog) | |
|
UU189 |
234460..234467 |
A |
8 |
UU-specific CHP (MBA paralog) |
|
|
UU189 |
233989..233995 |
A |
7 |
UU-specific CHP (MBA paralog) |
|
|
UU195 |
238306..238314 |
A |
9 |
CHP (possible methyltransferase) |
|
|
UU195 |
238349..238353 |
C |
5 |
CHP possible methyltransferase) |
|
|
UU196 |
239146..239158 |
TTAT |
3.25 |
CHP |
|
|
UU196 |
238703..238708 |
C |
6 |
CHP |
|
|
UU201 |
246010..246017 |
A |
8 |
CHP |
|
|
UU201 |
246209..246217 |
T |
9 |
CHP |
|
|
UU207 |
252391..252384 |
A |
8 |
CHP |
|
|
UU208 |
253413..253406 |
A |
8 |
HP |
|
|
UU209 |
253876..253869 |
A |
8 |
HP |
|
|
UU217 |
260005..260012 |
A |
8 |
CHP |
|
|
UU220 |
264308..264315 |
A |
8 |
HP |
|
|
UU226 |
272677..272683 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU226 |
273959..273965 |
A |
7 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU259 |
291992..291999 |
A |
8 |
CHP |
|
|
UU259 |
292139..292146 |
a |
8 |
CHP |
|
|
UU259 |
292395..292402 |
A |
8 |
CHP |
|
|
UU259 |
292914..292921 |
A |
8 |
CHP |
|
|
UU259 |
291801..291805 |
C |
5 |
CHP |
|
|
UU260 |
293235..293242 |
T |
8 |
CHP |
|
|
UU260 |
293243..293250 |
A |
8 |
CHP |
|
|
UU263 |
296962..296955 |
A |
8 |
HP |
|
|
UU269 |
305410..305417 |
A |
8 |
CHP |
|
|
UU271 |
306591..306598 |
A |
8 |
CHP |
|
|
UU271 |
307640..307647 |
A |
8 |
CHP |
|
|
UU275 |
310505..310512 |
A |
8 |
HP |
|
|
UU293 |
333713..333720 |
A |
8 |
CHP |
|
|
UU293 |
334945..334952 |
A |
8 |
CHP |
|
|
UU293 |
335447..335454 |
A |
8 |
CHP |
|
|
UU294 |
338119..338127 |
A |
9 |
HP |
|
|
UU294 |
338256..338263 |
A |
8 |
HP |
|
|
UU294 |
338409..338416 |
A |
8 |
HP |
|
|
UU295 |
338692..338705 |
AAC |
4.66 |
CHP (possibly YebC-related) |
|
|
UU303 |
343241..343248 |
A |
8 |
HP |
|
|
UU305 |
350069..350076 |
A |
8 |
CHP (possible HemK protein) |
|
|
UU305 |
350436..350441 |
C |
6 |
CHP (possible HemK protein) |
|
|
UU307 |
352175..352164 |
AATT |
3 |
HP (possible DNA replication initiation protein) |
|
|
UU307 |
352592..352581 |
AATT |
3 |
HP (possible DNA replication initiation protein) |
|
|
UU307 (352980..352030) |
352554..352547 |
A |
8 |
HP (possible DNA replication initiation protein) |
|
|
UU309 |
354771..354782 |
AAT |
4 |
HP |
|
|
UU309 (354465..355025) |
354480..354487 |
T |
8 |
HP |
|
|
UU317 |
361237..361244 |
A |
8 |
CHP |
|
|
UU323 |
369783..369776 |
A |
8 |
HP |
|
|
UU326 |
372611..372618 |
A |
8 |
HP |
|
|
UU328 |
373992..373999 |
A |
8 |
HP |
|
|
UU328 |
374420..374427 |
A |
8 |
HP |
|
|
UU329 |
375407..375414 |
T |
8 |
HP |
|
|
UU329 |
375434..375441 |
T |
8 |
HP |
|
|
UU330 |
376141..376149 |
A |
9 |
CHP |
|
|
UU330 |
376479..376486 |
A |
8 |
CHP |
|
|
UU334 |
379226..379233 |
A |
8 |
HP |
|
|
UU334 |
379305..379322 |
CTATTG |
3 |
HP |
|
|
UU335 |
379610..379617 |
A |
8 |
HP |
|
|
UU335 |
380454..380461 |
A |
8 |
HP |
|
|
UU335 |
381142..381149 |
A |
8 |
HP |
|
|
UU335 |
381455..381462 |
A |
8 |
HP |
|
|
UU336 |
382350..382357 |
A |
8 |
HP |
|
|
UU338 |
383808..383815 |
A |
8 |
HP |
|
|
UU338 |
384015..384022 |
T |
8 |
HP |
|
|
UU346 |
392350..392357 |
A |
8 |
CHP |
|
|
UU346 |
392507..392514 |
A |
8 |
CHP |
|
|
UU346 |
392821..392828 |
A |
8 |
CHP |
|
|
UU350 |
399241..399249 |
A |
9 |
CHP |
|
|
UU351 |
399739..399746 |
A |
8 |
HP |
|
|
UU353 |
401316..401309 |
T |
8 |
HP |
|
|
UU353 |
401601..401594 |
T |
8 |
HP |
|
|
UU353 |
401294..401285 |
TA |
5 |
HP |
|
|
UU367 |
418330..418319 |
GAA |
4 |
CHP |
|
|
UU374 |
427075..427069 |
T |
7 |
HP (possible frameshift with UU373) |
|
|
UU374 |
426898..426892 |
A |
7 |
HP (possible frameshift with UU373) |
|
|
UU374 |
426723..426717 |
A |
7 |
HP (possible frameshift with UU373) |
|
|
UU380 |
437298..437291 |
A |
8 |
HP |
|
|
UU384 |
442238..442245 |
A |
8 |
CHP (comE locus related) |
|
|
UU386 |
444161..444168 |
A |
8 |
CHP |
|
|
UU386 |
444177..444184 |
A |
8 |
CHP |
|
|
UU388 |
445939..445946 |
T |
8 |
HP |
|
|
UU389 |
447476..447483 |
T |
8 |
CHP (possible DNA helicase-related protein) |
|
|
UU389 |
448725..448732 |
A |
8 |
CHP (possible DNA helicase-related protein) |
|
|
UU392 |
454217..454224 |
T |
8 |
UU-specific CHP |
|
|
UU393 |
455826..455819 |
A |
8 |
CHP (probable acyl-carrier protein synthase) |
|
|
UU398 |
458075..458082 |
T |
8 |
HP |
|
|
UU405 |
466071..466064 |
AGTT |
2 |
CHP (probable membrane protein) |
|
|
UU405 |
465598..465589 |
AAGA |
2.5 |
CHP (probable membrane protein) |
|
|
UU409 |
470861..470854 |
T |
8 |
CHP |
|
|
UU417 |
481851..481844 |
A |
8 |
CHP |
|
|
UU422 |
486296..486303 |
T |
8 |
HP |
|
|
UU423 |
486629..486636 |
A |
8 |
HP |
|
|
UU423 |
487273..487280 |
A |
8 |
HP/ |
|
|
UU425 |
489322..489331 |
A |
10 |
HP |
|
|
UU451 |
511735..511728 |
A |
8 |
HP |
|
|
UU455 |
518338..518345 |
A |
8 |
CHP |
|
|
UU455 |
519004..519008 |
C |
5 |
CHP |
|
|
UU459 |
523687..523675 |
ATT |
4.33 |
HP |
|
|
UU462 |
526753..526746 |
T |
8 |
HP |
|
|
UU468 |
534483..534490 |
T |
8 |
CHP |
|
|
UU469 |
535790..535797 |
A |
8 |
CHP |
|
|
UU473 |
537696..537703 |
T |
8 |
UU-specific CHP |
|
|
UU474 |
539987..540009 |
TA |
11.5 |
CHP |
|
|
UU474 |
543590..543601 |
AAT |
4 |
CHP |
|
|
UU475 |
544605..544593 |
ATTT |
3.25 |
UU-specific CHP |
|
|
UU476 |
547505..547498 |
A |
8 |
UU-specific CHP |
|
|
UU478 |
549786..549766 |
AG |
10.5 |
HP |
|
|
UU480 |
555013..555017 |
G |
5 |
CHP (possible TmpC-related membrane lipoprotein) |
|
|
UU481 |
556353..556346 |
A |
8 |
UU specific CHP |
|
|
UU482 |
563039..563032 |
A |
8 |
CHP |
|
|
UU485 |
578260..578252 |
A |
9 |
UU-specific CHP |
|
|
UU485 |
579529..579522 |
A |
8 |
UU-specific CHP |
|
|
UU487 |
583603..583596 |
A |
8 |
UU-specific CHP (MBA N-term paralog) |
|
|
UU495 |
605596..605585 |
TAAA |
4 |
CHP |
|
|
UU495 |
608073..608066 |
A |
8 |
CHP |
|
|
UU497 |
611602..611609 |
A |
8 |
CHP |
|
|
UU520 |
645197..645190 |
A |
8 |
UU-specific CHP |
|
|
UU520 |
645262..645258 |
G |
5 |
UU-specific CHP |
|
|
UU526 |
653076..653069 |
A |
8 |
UU specific CHP (MBA N-term paralog) |
|
|
UU526 |
652949..652943 |
A |
7 |
UU specific CHP (MBA N-term paralog) |
|
|
UU526 |
652904..652898 |
A |
7 |
UU specific CHP (MBA N-term paralog) |
|
|
UU526 |
652815..652809 |
A |
7 |
UU specific CHP (MBA N-term paralog) |
|
|
UU526 |
651957..651951 |
A |
7 |
UU specific CHP (MBA N-term paralog) |
|
|
UU527 |
656238..656231 |
A |
8 |
CHP |
|
|
UU535 |
665132..665139 |
A |
8 |
CHP |
|
|
UU542 |
672070..672077 |
A |
8 |
HP |
|
|
UU543 |
673976..673983 |
T |
8 |
CHP |
|
|
UU543 |
677417..677428 |
ATT |
4 |
CHP |
|
|
UU547 |
681282..681275 |
A |
8 |
CHP (possible glu-tRNA amidotransferase, subunit C) |
|
|
UU547 |
681519..681512 |
A |
8 |
CHP (possible glu-tRNA amidotransferase, subunit C) |
|
|
UU549 |
684421..684414 |
A |
8 |
HP |
|
|
UU555 |
688244..688253 |
AC |
5 |
CHP (possible acetyltransferase) |
|
|
UU556 |
689258..689251 |
A |
8 |
HP |
|
|
UU570 |
710076..710069 |
A |
8 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
711412..711407 |
G |
6 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
711610..711605 |
G |
6 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
711640..711634 |
A |
7 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
710902..710896 |
A |
7 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
710714..710706 |
TAA |
3 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
710171..710165 |
A |
7 |
CHP (possible metallo-beta-lactamase) |
|
|
UU570 |
710093..710087 |
A |
7 |
CHP (possible metallo-beta-lactamase) |
|
|
UU571 |
715185..715181 |
G |
5 |
CHP (possible DNA helicase-related protein) |
|
|
UU578 |
723748..723755 |
A |
8 |
UU specific CHP |
|
|
UU579 |
724303..724310 |
T |
8 |
CHP (possible amino acid permease) |
|
|
UU579 |
724514..724521 |
T |
8 |
CHP (possible amino acid permease) |
|
|
UU579 |
724650..724657 |
T |
8 |
CHP (possible amino acid permease) |
|
|
UU579 |
725260..725267 |
T |
8 |
CHP (possible amino acid permease) |
|
|
UU583 |
730506..730500 |
T |
7 |
CHP integral membrane protein |
|
|
UU583 |
730506..730500 |
T |
7 |
CHP integral membrane protein |
|
|
UU583 |
729939..729932 |
AATT |
2 |
CHP integral membrane protein |
|
|
UU583 |
729696..729685 |
AATT |
3 |
CHP integral membrane protein |
|
|
UU583 |
729477..729467 |
GTG |
3.66 |
CHP integral membrane protein |
|
|
UU583 |
729354..729345 |
TAT |
3.33 |
CHP integral membrane protein |
|
|
UU583 |
729302..729294 |
TAT |
3 |
CHP integral membrane protein |
|
|
UU584 |
732764..732757 |
A |
8 |
CHP integral membrane protein |
|
|
UU584 |
732738..732732 |
A |
7 |
CHP integral membrane protein |
|
|
UU584 |
732634..732628 |
T |
7 |
CHP integral membrane protein |
|
|
UU584 |
732015..732009 |
A |
7 |
CHP integral membrane protein |
|
|
UU591 |
740742..740735 |
A |
8 |
HP |
|
|
UU592 |
741636..741628 |
A |
9 |
CHP |
|
|
UU593 |
741960..741953 |
T |
8 |
HP |
|
|
UU598 |
745987..745980 |
A |
8 |
CHP |
|
|
UU600 |
748586..748579 |
T |
8 |
CHP |
|
|
UU602 |
750416..750409 |
A |
8 |
CHP (probable inner membrane protein) |
1UU gene ID: The gene ID or Intergenic region (IGR) ID from the
STDGEN database (www.stdgen.lanl.gov).
2Repeat Coords.: The coordinate of the repeat in relation to the genome sequence in the STDGEN database.
3Unit Sequence: The sequence of the repeat unit.
4Num. Units: Number of units per repeat.
5Predicted Function: The predicted function as obtained from the annotated STDGEN Ureaplasma urealyticum database
(www.stdgen.lanl.gov).
6HP: Hypothetical protein.
7CHP: Conserved hypothetical protein.
8UU-specific CHP: Ureaplasma urealyticum-specific CHP.
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