Vibrio fischeri ES114 chromosome I

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174278-174377 (1-100) 174378-174477 (101-200) 174478-174577 (201-300) 174578-174677 (301-400) 174678-174777 (401-500)
174778-174877 (501-600) 174878-174977 (601-700) 174978-175077 (701-800) 175078-175177 (801-900) 175178-175277 (901-1000)
175278-175377 (1001-1100) 175378-175477 (1101-1200) 175478-175577 (1201-1300) 175578-175677 (1301-1400) 175678-175777 (1401-1500)
175778-175877 (1501-1600) 175878-175977 (1601-1700) 175978-176077 (1701-1800) 176078-176177 (1801-1900) 176178-176277 (1901-2000)
176278-176377 (2001-2100) 176378-176477 (2101-2200) [176478-176577 (2201-2300)] 176578-176677 (2301-2400) 176678-176777 (2401-2500)
176778-176852 (2501-2575)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176478 murG hypothetical VF2201 N-acetylglucosaminyl transferase
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
genbank 59712808 YP_205584.1 354 2479582 2480646
176479 hypothetical VF2202 cell division protein FtsW genbank 59712809 YP_205585.1 376 2480630 2481760
176480 murD hypothetical VF2203 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
genbank 59712810 YP_205586.1 404 2481835 2483049
176481 hypothetical VF2204 phospho-N-acetylmuramoyl-pentapeptide- transferase
catalyzes the binding of UDP-N-acetylmuramoyl (pentapeptide) to bactoprenol to produce lipid I in peptidoglycan synthesis
genbank 59712811 YP_205587.1 360 2483160 2484242
176482 hypothetical VF2205 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase genbank 59712812 YP_205588.1 452 2484242 2485600
176483 hypothetical VF2206 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase genbank 59712813 YP_205589.1 493 2485597 2487078
176484 hypothetical VF2207 cell division protein FtsI
division specific D,D-transpeptidase
genbank 59712814 YP_205590.1 579 2487086 2488825
176485 hypothetical VF2208 cell division protein FtsL genbank 59712815 YP_205591.1 108 2488822 2489148
176486 mraW hypothetical VF2209 S-adenosyl-methyltransferase genbank 59712816 YP_205592.1 316 2489145 2490095
176487 hypothetical VF2210 corrin/porphyrin methyltransferase genbank 59712817 YP_205593.1 309 2490726 2491655
176488 hypothetical VF2211 GS60 antigen genbank 59712818 YP_205594.1 603 2491768 2493579
176489 hypothetical VF2212 hypothetical protein genbank 59712819 YP_205595.1 123 2493560 2493931
176490 hypothetical VF2213 phosphoheptose isomerase genbank 59712820 YP_205596.1 196 2493935 2494525
176491 hypothetical VF2214 21 kDa hemolysin precursor genbank 59712821 YP_205597.1 195 2494530 2495117
176492 hypothetical VF2215 stringent starvation protein B genbank 59712822 YP_205598.1 154 2495187 2495651
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176493 sspA hypothetical VF2216 stringent starvation protein A
transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation
genbank 59712823 YP_205599.1 211 2495651 2496286
176494 hypothetical VF2217 cytochrome c1 genbank 59712824 YP_205600.1 245 2496430 2497167
176495 hypothetical VF2218 cytochrome b genbank 59712825 YP_205601.1 422 2497164 2498432
176496 hypothetical VF2219 ubiquinol-cytochrome c reductase iron-sulfur subunit genbank 59712826 YP_205602.1 38 2498432 2498548
176497 hypothetical VF2220 ubiquinol-cytochrome c reductase iron-sulfur subunit genbank 59712827 YP_205603.1 171 2498509 2499024
176498 hypothetical VF2221 30S ribosomal protein S9
Forms a direct contact with the tRNA during translation
genbank 59712828 YP_205604.1 130 2499419 2499811
176499 hypothetical VF2222 50S ribosomal protein L13
L13 is associated with the antitermination complex
genbank 59712829 YP_205605.1 142 2499827 2500255
176500 hypothetical VF2223 ATPase genbank 59712830 YP_205606.1 381 2500535 2501680
176501 hypothetical VF2224 outer membrane protein genbank 59712831 YP_205607.1 151 2501792 2502247
176502 hypothetical VF2225 endopeptidase DegP genbank 59712832 YP_205608.1 455 2502327 2503694
176503 hypothetical VF2226 protease DegS precursor genbank 59712833 YP_205609.1 354 2503809 2504873
176504 hypothetical VF2227 DNA topoisomerase IV subunit A
decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
genbank 59712834 YP_205610.1 758 2504936 2507212
176505 hypothetical VF2228 DNA topoisomerase IV subunit B
decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
genbank 59712835 YP_205611.1 626 2507215 2509095
176506 hypothetical VF2229 hypothetical protein genbank 59712836 YP_205612.1 194 2509239 2509823
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176507 hypothetical VF2230 3',5'-cyclic-nucleotide phosphodiesterase genbank 59712837 YP_205613.1 274 2509823 2510647
176508 hypothetical VF2231 phosphohydrolase (MutT/nudix family protein) genbank 59712838 YP_205614.1 156 2510663 2511133
176509 hypothetical VF2232 ADP-ribose pyrophosphatase genbank 59712839 YP_205615.1 212 2511096 2511734
176510 tolC hypothetical VF2233 outer membrane channel precursor protein
trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell
genbank 59712840 YP_205616.1 441 2511967 2513292
176511 hypothetical VF2234 D-glycero-D-manno-heptose-1-phosphate adenylyltransferase
D-glycero-D-manno-heptose-7-phosphate 1-kinase
genbank 59712841 YP_205617.1 476 2513386 2514816
176512 hypothetical VF2235 glutamate-ammonia-ligase adenylyltransferase genbank 59712842 YP_205618.1 951 2514952 2517807
176513 hypothetical VF2236 methyl-accepting chemotaxis protein genbank 59712843 YP_205619.1 533 2518013 2519614
176514 hypothetical VF2237 potassium channel protein genbank 59712844 YP_205620.1 254 2519721 2520485
176515 hypothetical VF2238 putative adenylate cyclase family genbank 59712845 YP_205621.1 505 2520566 2522083
176516 hypothetical VF2239 hypothetical protein genbank 59712846 YP_205622.1 226 2522269 2522949
176517 hypothetical VF2240 low-affinity inorganic phosphate transporter genbank 59712847 YP_205623.1 426 2522977 2524257
176518 hypothetical VF2241 arylsulfatase genbank 59712848 YP_205624.1 203 2524426 2525037
176519 hypothetical VF2242 general secretion pathway protein B genbank 59712849 YP_205625.1 225 2525101 2525778
176520 hypothetical VF2243 general secretion pathway protein A genbank 59712850 YP_205626.1 518 2525780 2527336
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176521 hypothetical VF2244 tRNA nucleotidyltransferase genbank 59712851 YP_205627.1 407 2527473 2528696
176522 uppP hypothetical VF2245 undecaprenyl pyrophosphate phosphatase
BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
genbank 59712852 YP_205628.1 267 2528959 2529762
176523 hypothetical VF2246 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase genbank 59712853 YP_205629.1 162 2529772 2530260
176524 hypothetical VF2247 dihydroneopterin aldolase genbank 59712854 YP_205630.1 117 2530257 2530610
176525 hypothetical VF2248 hypothetical protein genbank 59712855 YP_205631.1 198 2530756 2531352
176526 hypothetical VF2249 O-sialoglycoprotein endopeptidase genbank 59712856 YP_205632.1 338 2531404 2532420
176527 hypothetical VF2250 30S ribosomal protein S21
Interacts with residues in the 16S gene, protecting the stem-loop structure
genbank 59712857 YP_205633.1 71 2532648 2532863
176528 hypothetical VF2251 GatB/YqeY domain protein genbank 59712858 YP_205634.1 147 2532893 2533336
176529 hypothetical VF2252 hypothetical protein genbank 59712859 YP_205635.1 236 2533412 2534122
176530 hypothetical VF2253 DNA primase genbank 59712860 YP_205636.1 311 2534244 2535179
176531 hypothetical VF2254 RNA polymerase sigma factor
Binds with the catalytic core of RNA polymerase to produce the holoenzyme
genbank 59712861 YP_205637.1 613 2535279 2537120
176532 hypothetical VF2255 hypothetical protein genbank 59712862 YP_205638.1 206 2537732 2538352
176533 hypothetical VF2256 long-chain-fatty-acid--CoA ligase genbank 59712863 YP_205639.1 514 2538498 2540042
176534 hypothetical VF2257 hypothetical protein genbank 59712864 YP_205640.1 133 2540125 2540526
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176535 hypothetical VF2258 pyruvate kinase
catalyzes the formation of phosphoenolpyruvate from pyruvate
genbank 59712865 YP_205641.1 470 2540912 2542324
176536 hypothetical VF2259 transcriptional regulator genbank 59712866 YP_205642.1 220 2542465 2543127
176537 hypothetical VF2260 hypothetical protein genbank 59712867 YP_205643.1 43 2543173 2543304
176538 hypothetical VF2261 sensory box/GGDEF family protein genbank 59712868 YP_205644.1 631 2543430 2545325
176539 hypothetical VF2262 acetolactate synthase III small subunit
with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity
genbank 59712869 YP_205645.1 164 2545458 2545952
176540 hypothetical VF2263 acetolactate synthase III large subunit
with IlvH catalyzes the formation of 2-acetolactate from pyruvate
genbank 59712870 YP_205646.1 573 2545952 2547673
176541 hypothetical VF2264 long-chain-fatty-acid--CoA ligase genbank 59712871 YP_205647.1 612 2547947 2549785
176542 hypothetical VF2265 probable activator protein in leuABCD operon genbank 59712872 YP_205648.1 323 2550032 2551003
176543 metL hypothetical VF2266 bifunctional aspartate kinase II/homoserine dehydrogenase II
multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
genbank 59712873 YP_205649.1 805 2551329 2553746
176544 hypothetical VF2267 cystathionine gamma-synthase
catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
genbank 59712874 YP_205650.1 388 2553746 2554912
176545 hypothetical VF2268 transcriptional repressor protein MetJ
when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
genbank 59712875 YP_205651.1 106 2555261 2555581
176546 hypothetical VF2269 glycosidase genbank 59712876 YP_205652.1 634 2555818 2557722
176547 hypothetical VF2270 hypothetical protein genbank 59712877 YP_205653.1 446 2558133 2559473
176548 hypothetical VF2271 maltose operon periplasmic protein precursor genbank 59712878 YP_205654.1 275 2559547 2560374
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176549 hypothetical VF2272 NADP-dependent malic enzyme genbank 59712879 YP_205655.1 415 2560452 2561699
176550 hypothetical VF2273 50S ribosomal protein L31
RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponentia
genbank 59712880 YP_205656.1 72 2561965 2562183
176551 hypothetical VF2274 primosome assembly protein PriA
binding of PriA to forked DNA starts the assembly of the primosome, also posseses 3'-5' helicase activity
genbank 59712881 YP_205657.1 737 2562411 2564624
176552 hypothetical VF2275 transcriptional repressor CytR genbank 59712882 YP_205658.1 335 2564816 2565823
176553 hypothetical VF2276 cell division protein FtsN genbank 59712883 YP_205659.1 199 2565971 2566570
176554 hypothetical VF2277 ATP-dependent protease peptidase subunit
heat shock protein involved indegradation of misfolded proteins
genbank 59712884 YP_205660.1 193 2566694 2567275
176555 hypothetical VF2278 ATP-dependent protease ATP-binding subunit
heat shock protein involved in degradation of misfolded proteins
genbank 59712885 YP_205661.1 444 2567295 2568629
176556 hypothetical VF2279 OsmC-like protein genbank 59712886 YP_205662.1 134 2568705 2569109
176557 hypothetical VF2280 catabolite gene activator Vfr genbank 59712887 YP_205663.1 210 2569355 2569987
176558 hypothetical VF2281 hypothetical protein genbank 59712888 YP_205664.1 264 2570062 2570856
176559 hypothetical VF2282 succinylglutamic semialdehyde dehydrogenase genbank 59712889 YP_205665.1 485 2570868 2572325
176560 hypothetical VF2283 arginine N-succinyltransferase, beta chain genbank 59712890 YP_205666.1 338 2572338 2573354
176561 argD hypothetical VF2284 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxog
genbank 59712891 YP_205667.1 404 2573422 2574636
176562 hypothetical VF2285 para-aminobenzoate synthase component II
catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
genbank 59712892 YP_205668.1 192 2574941 2575519
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176563 hypothetical VF2286 tryptophanyl-tRNA synthetase
catalyzes a two-step reaction; first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
genbank 59712893 YP_205669.1 338 2575608 2576624
176564 hypothetical VF2287 phosphoglycolate phosphatase
catalyzes the formation of glycolate from 2-phosphoglycolate
genbank 59712894 YP_205670.1 227 2576744 2577427
176565 hypothetical VF2288 ribulose-phosphate 3-epimerase
catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
genbank 59712895 YP_205671.1 225 2577433 2578110
176566 hypothetical VF2289 DNA adenine methylase genbank 59712896 YP_205672.1 276 2578278 2579108
176567 hypothetical VF2290 hypothetical protein genbank 59712897 YP_205673.1 507 2579191 2580714
176568 hypothetical VF2291 3-dehydroquinate synthase
catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate
genbank 59712898 YP_205674.1 362 2580723 2581811
176569 hypothetical VF2292 shikimate kinase I
catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
genbank 59712899 YP_205675.1 172 2581848 2582366
176570 hypothetical VF2293 pili secretion protein PilQ genbank 59712900 YP_205676.1 582 2582591 2584339
176571 hypothetical VF2294 pilus expression protein genbank 59712901 YP_205677.1 172 2584366 2584884
176572 hypothetical VF2295 pili assembly protein PilO genbank 59712902 YP_205678.1 192 2584877 2585455
176573 hypothetical VF2296 pili assembly protein PilN genbank 59712903 YP_205679.1 188 2585455 2586021
176574 hypothetical VF2297 pili assembly protein PilM genbank 59712904 YP_205680.1 333 2586006 2587007
176575 hypothetical VF2298 multimodular transpeptidase-transglycosylase PBP 1A genbank 59712905 YP_205681.1 832 2587142 2589640
176576 hypothetical VF2299 hydrogen peroxide-inducible genes activator genbank 59712906 YP_205682.1 299 2589707 2590606
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
176577 hypothetical VF2300 glutaredoxin
thiol peroxidase
genbank 59712907 YP_205683.1 242 2590787 2591515


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