YPO2669
4 hits
228 letters
ath 
83 At1g21840 (240)
spo 
76 SPAC29A4.13 (235)
spo 68 _ SPBC12D12.03 (556) KOG0360
dme 
68 7294490 (1544)
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= YPO2669
(228 letters)
Database: kyva
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
At1g21840 37 0.043
SPAC29A4.13 34 0.28
SPBC12D12.03 31 2.3
7294490 31 2.3
# >At1g21840
# Length = 240
#
# Score = 36.6 bits (83), Expect = 0.043
# Identities = 19/46 (41%), Positives = 26/46 (56%)
#
# Query: 11 QFGDSVLPVGAFTFSNGVESAIQTGIVHDVATLKGFVLTALKQAAS 56
# Q DS+LP G F S G+E+AIQT +V L+ ++ L AS
# Sbjct: 24 QLLDSILPTGGFAHSFGLEAAIQTRLVSSPEDLETHIIHVLDNTAS 69
#
#
# >SPAC29A4.13
# Length = 235
#
# Score = 33.9 bits (76), Expect = 0.28
# Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 35/182 (19%)
#
# Query: 14 DSVLPVGAFTFSNGVESAIQTGIVHDVATLKGFVLTALKQAASCDGMGXXXXXXXXXXXX 73
# D+ P+ +F++S G+ES + V DV F+ +L +
# Sbjct: 16 DTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTN--------------- 60
#
# Query: 74 XXGIIRADWAVNNRKLNEE-----------SRLMATRMGKKLAE-----MSIHVVEHPLI 117
# ++A W + E ++ ++T GK L +S V +
# Sbjct: 61 -LPTVKAAWESPQQYSEIEDFFESTQTCTIAQKVSTMQGKSLLNIWTKSLSFFVTSTDVF 119
#
# Query: 118 SWWLE---QIKNGNTAGTYPVTQAVVMAAQGIGQREVVVMHQYGVAMTILSAAMRLMRVT 174
# + E ++++ G +PV VV A G+ + G A +I SAA+RL +T
# Sbjct: 120 KYLDEYERRVRSKKALGHFPVVWGVVCRALGLSLERTCYLFLLGHAKSICSAAVRLDVLT 179
#
# Query: 175 HF 176
# F
# Sbjct: 180 SF 181
#
#
# >SPBC12D12.03
# Length = 556
#
# Score = 30.8 bits (68), Expect = 2.3
# Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
#
# Query: 124 IKNGNTAGT--YPVTQAVVMAAQGIGQREVVVMHQYGVAMTILSAAMR 169
# +K N+ G YPV ++ A G RE V++ Y + TI S AM+
# Sbjct: 184 VKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMK 231
#
#
# >7294490
# Length = 1544
#
# Score = 30.8 bits (68), Expect = 2.3
# Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
#
# Query: 76 GIIRADWAVNNRKLNEESRLMATRMGKKLAEMSIHVVEHPLISWWLEQIKNGNTA--GTY 133
# G+ + +W R LNE R ++ G+ AE ++ ++ +NG +
# Sbjct: 245 GVFKLEWEFEGR-LNEVVRFLSNNNGEIYAERRPGHIDQVVVD------RNGTVSLEAVV 297
#
# Query: 134 PVTQAVVM--AAQGIGQREVVVMHQYGVAMTILSAAMRLMRVT 174
# P + V+ QG+ V V+H GVAM L+ L V+
# Sbjct: 298 PTGKPVITFRVVQGLKDECVCVLHDEGVAMMDLAKGNTLCEVS 340
#
#
Database: kyva
Posted date: Nov 11, 2002 5:09 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.323 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,776,319
Number of Sequences: 112920
Number of extensions: 555720
Number of successful extensions: 1605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 5
length of query: 228
length of database: 47,500,486
effective HSP length: 105
effective length of query: 123
effective length of database: 35,643,886
effective search space: 4384197978
effective search space used: 4384197978
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)