BLASTP 2.0.8 [Jan-05-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= YOL010W YOL010W, Chr XV from 307938-309041 (367 letters) Database: nr 361,503 sequences; 110,384,460 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|2500651|sp|Q08096|RTC1_YEAST RNA 3'-TERMINAL PHOSPHATE CYCLA... 732 0.0 gi|1351630|sp|Q09870|RTC1_SCHPO PROBABLE RNA 3'-TERMINAL PHOSPH... 274 7e-73 gi|2500650|sp|Q23400|RTC1_CAEEL PROBABLE RNA 3'-TERMINAL PHOSPH... 192 2e-48 gi|1330376 (U58758) ZK1127.5 [Caenorhabditis elegans] 120 2e-26 gi|2500649|sp|P56175|RTC1_DROME PROBABLE RNA 3'-TERMINAL PHOSPH... 96 4e-19 gi|3914930|sp|O27937|RTCA_METTH PROBABLE RNA 3'-TERMINAL PHOSPH... 85 5e-16 gi|2500648|sp|O00442|RTC1_HUMAN RNA 3'-TERMINAL PHOSPHATE CYCLA... 85 9e-16 gi|3914932|sp|O28837|RTCA_ARCFU PROBABLE RNA 3'-TERMINAL PHOSPH... 79 5e-14 gi|2500652|sp|Q60335|RTCA_METJA PROBABLE RNA 3'-TERMINAL PHOSPH... 78 9e-14 gi|3914927|sp|O15746|RTC1_DICDI PROBABLE RNA 3'-TERMINAL PHOSPH... 70 3e-11 gi|3676131|emb|CAA21129| (AL031765) 1-evidence=predicted by con... 68 1e-10 gi|3914936|sp|O66884|RTCA_AQUAE PROBABLE RNA 3'-TERMINAL PHOSPH... 66 3e-10 gi|3914934|sp|O59198|RTCA_PYRHO PROBABLE RNA 3'-TERMINAL PHOSPH... 66 4e-10 gi|2507354|sp|P46849|RTCA_ECOLI RNA 3'-TERMINAL PHOSPHATE CYCLA... 50 3e-05 >gi|2500651|sp|Q08096|RTC1_YEAST RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2131987|pir||S66692 hypothetical protein YOL010w - yeast (Saccharomyces cerevisiae) >gi|1419779|emb|CAA99009| (Z74752) ORF YOL010w [Saccharomyces cerevisiae] Length = 367 Score = 732 bits (1870), Expect = 0.0 Identities = 367/367 (100%), Positives = 367/367 (100%) Query: 1 MSSSAPKYTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVT 60 MSSSAPKYTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVT Sbjct: 1 MSSSAPKYTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVT 60 Query: 61 NGSVIEISYTGTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKG 120 NGSVIEISYTGTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKG Sbjct: 61 NGSVIEISYTGTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKG 120 Query: 121 ITASHNDAGIEAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITM 180 ITASHNDAGIEAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITM Sbjct: 121 ITASHNDAGIEAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITM 180 Query: 181 HEIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPG 240 HEIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPG Sbjct: 181 HEIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPG 240 Query: 241 WGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVY 300 WGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVY Sbjct: 241 WGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVY 300 Query: 301 MVIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIGFT 360 MVIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIGFT Sbjct: 301 MVIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIGFT 360 Query: 361 NTSKKIA 367 NTSKKIA Sbjct: 361 NTSKKIA 367 >gi|1351630|sp|Q09870|RTC1_SCHPO PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2130253|pir||S62537 hypothetical protein SPAC12G12.06c - fission yeast (Schizosaccharomyces pombe) >gi|1052524|emb|CAA91501| (Z66568) SPAC12G12.06c, unknown, len: 363 [Schizosaccharomyces pombe] Length = 363 Score = 274 bits (693), Expect = 7e-73 Identities = 154/362 (42%), Positives = 225/362 (61%), Gaps = 14/362 (3%) Query: 11 FQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYT 70 F+G + R+VLATLSG PI++E I + +PG+KDY+VSFLRL+E +TNGSVIEISYT Sbjct: 9 FKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISYT 68 Query: 71 GTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGI 130 GT+ IYRPG I+GG H CP++K +GYF+EP+L L F+K S+ G+T+S+ D G+ Sbjct: 69 GTSFIYRPGNIIGGRVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIGV 128 Query: 131 EAIKWGLMPVMEK-FGV-RECALHTLKRGSPPLGGGEVH----LVVDSLIAQPITMHEID 184 + ++ ++P ++K F V E L LKRGS P GGGEV+ ++ +SL PI + E Sbjct: 129 DVLRTSVLPSLQKRFQVGDELELRILKRGSAPGGGGEVNFLCPVIKESL--PPIRLSEFG 186 Query: 185 RPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGIT 244 R + I G+A STRVSP+ NR+++ A+ VL +V I DV RG+ G SPG+ IT Sbjct: 187 R--VFRIRGIASSTRVSPAFANRLVESARGVLNPFIPDVFIYTDVRRGDECGNSPGYSIT 244 Query: 245 LVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIG 304 LVA++ KG SY AE G+AG PE++G A +LLE I V P + M++ Sbjct: 245 LVAET-NKGCSYAAEHCGEAGETPEDVGSFCAKKLLEVIESGGCVDPYTQPSTLTGMLLS 303 Query: 305 KEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIGFTNTSK 364 ED+ + + + I + ++ LRD+K +FN E K ++ E + G G+ N ++ Sbjct: 304 SEDVNTIVVGQLGITSQLVVFLRDVKALFNCEYRFKELESGQVE---MSCLGKGYLNVNR 360 Query: 365 KI 366 +I Sbjct: 361 RI 362 >gi|2500650|sp|Q23400|RTC1_CAEEL PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) Length = 379 Score = 192 bits (484), Expect = 2e-48 Identities = 124/376 (32%), Positives = 199/376 (51%), Gaps = 25/376 (6%) Query: 11 FQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYT 70 F G FR+R+ + LSG+PI+I IR D PG++D+E + L+E VTNG+ +EIS T Sbjct: 8 FSGCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRT 67 Query: 71 GTTVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGI 130 GT VI+RPG+I GG C + + + YF+EP+L L+PF K I KG+T + + + Sbjct: 68 GTQVIFRPGMITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISV 127 Query: 131 EAIKWGLMPVMEKFGVRE--CALHTLKRGSPPLGGGEVHLVVDSL-IAQPITMHEIDRPI 187 + +K + V KF + + + RG P GGG V + +P+ ++ + Sbjct: 128 DGMKASWLKVYNKFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGK-- 185 Query: 188 ISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVA 247 + I G AY T+V+PSL RMID AKK + +V IT D +G+ G SPG+G+ L A Sbjct: 186 VCKIRGQAYVTKVTPSLAYRMIDAAKKAMHGYISDVYITVDQRKGDAGGASPGYGLFLTA 245 Query: 248 QSKQKGWSYFAEDI----GDAG--SIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYM 301 ++ + G Y AE I G++G +PE++G + LL++I A+ + LA +M Sbjct: 246 ETTE-GVIYQAEAISRPKGESGVPILPEDIGIEAGHALLQQIYMGGALDSSAQILASTFM 304 Query: 302 VIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPV------DEAD-----NEDM 350 + +D+ + + LR +K+ F E ++ +EAD + Sbjct: 305 TLCPKDVSHFLYG--PLPMYSVHALRHLKQFFEIEFKMEDFKKTLKEEEADLKTGSADKA 362 Query: 351 IATIKGIGFTNTSKKI 366 + T G+G++N +K I Sbjct: 363 MVTAVGVGYSNLNKTI 378 >gi|1330376 (U58758) ZK1127.5 [Caenorhabditis elegans] Length = 303 Score = 120 bits (298), Expect = 2e-26 Identities = 90/307 (29%), Positives = 151/307 (48%), Gaps = 25/307 (8%) Query: 80 IIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEAIKWGLMP 139 +I GG C + + + YF+EP+L L+PF K I KG+T + + ++ +K + Sbjct: 1 MITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASWLK 60 Query: 140 VMEKFGVRECALHTL--KRGSPPLGGGEVHLVVDSL-IAQPITMHEIDRPIISSITGVAY 196 V KF + + L RG P GGG V + +P+ ++ + + I G AY Sbjct: 61 VYNKFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGK--VCKIRGQAY 118 Query: 197 STRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQKGWSY 256 T+V+PSL RMID AKK + +V IT D +G+ G SPG+G+ L A++ + G Y Sbjct: 119 VTKVTPSLAYRMIDAAKKAMHGYISDVYITVDQRKGDAGGASPGYGLFLTAETTE-GVIY 177 Query: 257 FAEDI----GDAG--SIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGR 310 AE I G++G +PE++G + LL++I A+ + LA +M + +D+ Sbjct: 178 QAEAISRPKGESGVPILPEDIGIEAGHALLQQIYMGGALDSSAQILASTFMTLCPKDVSH 237 Query: 311 LRINKEQIDERFIILLRDIKKIFNTEVFLKPV------DEAD-----NEDMIATIKGIGF 359 + + LR +K+ F E ++ +EAD + + T G+G+ Sbjct: 238 FLYG--PLPMYSVHALRHLKQFFEIEFKMEDFKKTLKEEEADLKTGSADKAMVTAVGVGY 295 Query: 360 TNTSKKI 366 +N +K I Sbjct: 296 SNLNKTI 302 >gi|2500649|sp|P56175|RTC1_DROME PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) Length = 235 Score = 96.0 bits (235), Expect = 4e-19 Identities = 74/235 (31%), Positives = 120/235 (50%), Gaps = 26/235 (11%) Query: 151 LHTLKRGSPPLGGGEVHL---VVDSLIAQPITMHEIDRPIISSITGVAYSTRVSPSLVNR 207 L ++RG PLGGGE+ V SL A + ++ I G Y+ +VSP++ NR Sbjct: 7 LKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQ----SQGMVKRIRGTVYACKVSPAMANR 62 Query: 208 MIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQKGWSYFA-------ED 260 ++ AK + +V I D +G+ SG SPG+GI L+A++ G + A E+ Sbjct: 63 TVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTD-GVCFAADCCSNTREE 121 Query: 261 IGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGRLRINK-EQID 319 D SIPE LG++VA +LL+EI + V + LA +Y+ +G++ + + Sbjct: 122 SEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYT 181 Query: 320 ERFIILLRDI----KKIFNTEVFLKPVDEADN----EDMIATIKGIGFTNTSKKI 366 F+ LRD K+ N E + DEA+N + ++ GIG+TN +K++ Sbjct: 182 VHFLQHLRDFFSITFKLENPEA--EDEDEAENVRGAQKVLMACVGIGYTNINKRV 234 >gi|3914930|sp|O27937|RTCA_METTH PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2623049 (AE000942) conserved protein [Methanobacterium thermoautotrophicum] Length = 337 Score = 85.4 bits (208), Expect = 5e-16 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 10/291 (3%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G R+ LA ++ + +++ IR+ GL ++ +R + ++NG++ Sbjct: 12 GGAVVRVSTALAAVTSRSVRVYNIRARRSRSGLSHQHLTAVRAVARISNGTLRGDELGSM 71 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 + + PG + GG ++ G ++ ++ A S+ + + G T + Sbjct: 72 ELEFSPGRVTGGTFNFDVKTAGSTGLVLQAIMVAAAASEGEIDVTVSGGTDVLWAPTCDY 131 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSIT 192 ++ +PV+E G + ++RG P GGG VH +++ +PIT+ E + I ++ Sbjct: 132 LREVTIPVLEMMGY-SARIEIIRRGYYPEGGGRVHAIIEPSELRPITLEESE---IHAVR 187 Query: 193 GVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQK 252 G+++S + + R + A K+L+ +V+I + G G GITL A+ + Sbjct: 188 GISHSRNLPVHVAERQAESAMKILRGAGLDVDIMVEDASGP---VGRGSGITLWAEGNTR 244 Query: 253 GWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVI 303 A +G G E++G + A +LL I + + R I YM + Sbjct: 245 ---LGAVSLGKPGKRAEKVGSEAARELLGFIESGSPLDRYMGDQIIPYMAL 292 >gi|2500648|sp|O00442|RTC1_HUMAN RNA 3'-TERMINAL PHOSPHATE CYCLASE 1 (RNA-3'-PHOSPHATE CYCLASE 1) (RNA CYCLASE 1) >gi|2125812|emb|CAA72364| (Y11651) phosphate cyclase [Homo sapiens] Length = 366 Score = 84.7 bits (206), Expect = 9e-16 Identities = 89/358 (24%), Positives = 156/358 (42%), Gaps = 19/358 (5%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R+ L+ L G P++++KIR+G PGL+ +S L +I + +G + T Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGAEIGST 75 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 + + P I GG T ++ V ++ + F+ + KG T + I+ Sbjct: 76 EITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNAEMAPQIDY 135 Query: 133 IKWGLMPVMEKFG-VRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSI 191 P++EKFG + C + T RG P GGGEV +V S + Q ++ +R ++ I Sbjct: 136 TVMVFKPIVEKFGFIFNCDIKT--RGYYPKGGGEV-IVRMSPVKQLNPINLTERGCVTKI 192 Query: 192 TGVAYSTRVSPSLVNRMIDGA-----KKVLKNLQCEVNITADVWRGENSGKSPGWGITLV 246 G A+ V P V + + A +K +++L VNI V ++ G GI ++ Sbjct: 193 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLY--VNI-QPVQEPKDQAFGNGNGIIII 249 Query: 247 AQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKE 306 A++ G + +G G +++G + A LL + V IV+M + Sbjct: 250 AET-STGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQDQLIVFMALAN- 307 Query: 307 DIGRLRINKEQIDERFIILLRDIKKIFNTEVFLK---PVDEADNEDMIATIKGIGFTN 361 G RI + + ++I + +K ++A + I +GIG TN Sbjct: 308 --GVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKDTYIIECQGIGMTN 363 >gi|3914932|sp|O28837|RTCA_ARCFU PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2649133 (AE001004) conserved hypothetical protein [Archaeoglobus fulgidus] Length = 328 Score = 78.8 bits (191), Expect = 5e-14 Identities = 71/330 (21%), Positives = 133/330 (39%), Gaps = 15/330 (4%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+ ++GK ++I IR+ PGL + + + ++N V + T Sbjct: 12 GGQILRTAVALSCVTGKAVRIRNIRANRPKPGLAAQHLKGIEAAKIISNAEVEGLRIGST 71 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 +++ PG + GG ++ V + +L F+ + ++ G T ++ Sbjct: 72 EIVFNPGSVRGGNFRVDIGTAGSVTLIFQTVLLPLLFADRDSTLTVTGGTDVAWAPPVDY 131 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSIT 192 K + + + G EC L LKRG P GGG V L V + + ID + Sbjct: 132 FKNVTLRALREMGA-ECELEVLKRGYYPKGGGMVRLTVRPAEMKGVVYERID----EIVR 186 Query: 193 GVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQK 252 GV++ + + R A+ L+ I +V +G ++G +V S K Sbjct: 187 GVSHCQNLPGHVAERQASSARNFLEERGIRAEIRTEVLKGLSTGSG------IVLWSGYK 240 Query: 253 GWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIGRLR 312 G S E A + +E E + +L+ + + A + +P A M G+ + Sbjct: 241 GGSALGERGKRAEVVGQEAAESLYRELMSDAAFDAHLADQVMPFAA--MARGRTEYTTSE 298 Query: 313 INKEQIDERFII--LLRDIKKIFNTEVFLK 340 + Q ++I L + K ++ +K Sbjct: 299 VTMHQKSNAYVINTFLGKVVKFEGNKIIIK 328 >gi|2500652|sp|Q60335|RTCA_METJA PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2128089|pir||A64303 hypothetical protein MJ0025 - Methanococcus jannaschii >gi|1498784 (U67461) hypothetical protein [Methanococcus jannaschii] Length = 338 Score = 78.0 bits (189), Expect = 9e-14 Identities = 72/297 (24%), Positives = 128/297 (42%), Gaps = 13/297 (4%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+ L+ KP+KI IR N GL VS ++ ++ + N V ++ Sbjct: 14 GGQIIRTAVSLSALTQKPVKIINIRKKRKNKGLAPQHVSAVKAVKKLCNAEVFGLNVGSE 73 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 + + P + T ++ + ++ +L L+ KKF++ KG T I+ Sbjct: 74 ELTFIPSKLSPKDFTIDIGTAGSISLVIQTLLPLSLGINKKFTVKIKGGTDVKRAPPIDY 133 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSIT 192 +K + ++ FGV L LKRG P GGGEV V + + I+ + + Sbjct: 134 VKNVTLKILRNFGVL-TELKVLKRGFYPEGGGEVIFEVKPSKIKKFDL--IEHSKSNLVE 190 Query: 193 GVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQK 252 G++Y + S+ RM A +L + NI + +G ++G +V + Sbjct: 191 GISYVQNLDESIARRMRKKAVDLLNKEKLLPNIKIECSKGISTGAG------IVLWNDTL 244 Query: 253 GWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVYMVIGKEDIG 309 G S +G+ G E + E+ +LL+E A+ + I ++ GK +G Sbjct: 245 GGSC----LGEKGLRAEIVAERAVNELLKERESGMALDKYMGDQIIPFLAFGKGIVG 297 >gi|3914927|sp|O15746|RTC1_DICDI PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2425127 (AF020279) similar to H. sapiens phosphate cyclase encoded by GenBank Accession Number Y11651 [Dictyostelium discoideum] Length = 433 Score = 69.9 bits (168), Expect = 3e-11 Identities = 82/306 (26%), Positives = 128/306 (41%), Gaps = 23/306 (7%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + LA+L K I IEKIR PGLK+ + + L+ + + S Sbjct: 46 GGQILRNSVALASLFNKAISIEKIRYNRDQPGLKNQHKAGIDLMSRLFKAHLTGCSVGSC 105 Query: 73 TVIYRP--------GIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITAS 124 + Y+P G+I A T S + P L AP S K ++ G T Sbjct: 106 KLYYQPTQKTIQDDGVI--EADTKTAGSICLMIQVSLPCLIFAPHSTK---MVLGGGTNC 160 Query: 125 HNDAGIEAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLI--AQPITM-- 180 + I+ +P+ G + C + KRG P GGG V L L PIT+ Sbjct: 161 DFAPAADYIQNVFLPIATTMGFK-CEMSIDKRGFYPKGGGAVTLTTQPLTQPLSPITIVN 219 Query: 181 -HEIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSP 239 E++R +I S S R+SP + RM + AKK++K +V++ ++ Sbjct: 220 KGEVNRIVIKS---YFTSPRISPLVAERMNNTAKKLIKKDFKKVDVETELIDVSKFSFGD 276 Query: 240 GWGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIV 299 G I + A + Q G + A G G E++ E A LL+++ + I+ Sbjct: 277 GTFIEIRAYTDQ-GCIFGATGNGAIGVPAEKVAEDAANSLLKDLQDGGCMDEYLQDQLII 335 Query: 300 YMVIGK 305 +M + K Sbjct: 336 FMALAK 341 >gi|3676131|emb|CAA21129| (AL031765) 1-evidence=predicted by content; 1-method=genefinder;084; 1-method_score=51.07; 1-evidence_end; 2-evidence=predicted by match; 2-match_accession=SWISS-PROT:O00442; 2-match_description=RNA 3'-TERMINAL PHOSPHATE CYCLAS... Length = 361 Score = 67.9 bits (163), Expect = 1e-10 Identities = 87/363 (23%), Positives = 148/363 (39%), Gaps = 35/363 (9%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+ + GKP+++ KIR+ +PGL + L L+ +TN V+ + Sbjct: 17 GGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSS 76 Query: 73 TVIYRPGIIVGG---ASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAG 129 TV + P I+ TH S + P+L F+ + ++ G T Sbjct: 77 TVEFTPRTILDNTYRVETHTAASITLIYQMALPVLL---FAGRPSRLIVSGGTNVDFAPP 133 Query: 130 IEAIKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPI-- 187 +E ++ L+P ++ FGV L + G P G G L V QP+T + + Sbjct: 134 VEYMQEVLLPNLKHFGV-SFDLKVQRYGFYPRGQGRCQLDV-----QPVTKLNSGKLVAF 187 Query: 188 --ISSITGVAY-STRVSPSLVNRMIDGAKKVLKNL----QCEVNITADVWRGENSGKSPG 240 I S++GVAY + R+ ++ M A++ + L QC + + G Sbjct: 188 GRIKSVSGVAYCAGRLPVNIAIDMQQTAQREIHRLWPSQQCSIE---PIKHSRQKAFHNG 244 Query: 241 WGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPLAIVY 300 GI L+ + A +G LG + +CQL + + K V I+Y Sbjct: 245 AGI-LMTVNTTSDVVLGASALGKKRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLIIY 303 Query: 301 MVIGKEDIGR--LRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIKGIG 358 M + +GR +R K R I + + +V ++P M+ + KG+G Sbjct: 304 MALA---VGRSTMRTGKLTNHTRTAINVAEQMTGVKFDVAMEP-----GGQMLVSCKGLG 355 Query: 359 FTN 361 N Sbjct: 356 HVN 358 >gi|3914936|sp|O66884|RTCA_AQUAE PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|2983257 (AE000700) hypothetical protein [Aquifex aeolicus] Length = 360 Score = 66.3 bits (159), Expect = 3e-10 Identities = 88/362 (24%), Positives = 149/362 (40%), Gaps = 34/362 (9%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+TL P++I IR+ PGLK ++ ++L++ V Sbjct: 15 GGQIVRTALFLSTLLQVPVRIYNIRAKREKPGLKRQHLNIVKLLKRFAKAKVKGDELGSI 74 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 + Y+P + G ++ + F++ +L L+ F + I G T I+ Sbjct: 75 ELEYKPQKLKPGYYEVNFDTAGSIPLFLQTILPLSLFVPGEVVIKVIGGTDVPKSPTIDW 134 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVV-DSLIAQPITMHEIDRPIISSI 191 +++ + + K L LKRG P GGG V L V + L QP + E+ + + Sbjct: 135 VRFVFLHYIYKV-PEFIRLEVLKRGFYPAGGGIVQLSVRNKLEKQPENLQEVKEYLKDKV 193 Query: 192 T---------------GVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSG 236 VA+ + R GA + LKNL +V+R + Sbjct: 194 NLYRTERGEIRKIHVFSVAHEELRERKVAERQAKGAIEALKNLGYP---EPEVYRQYANA 250 Query: 237 KSPGWGITLVAQSKQKGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGRNQLPL 296 S G IT+ + KG A+++G G + E +G + +L E+ S A V R+ Sbjct: 251 NSIGTSITIWLED-TKGNVLGADNLGKKGKLAEVVGAEAVKKLHEDWSSGATVDRHLADH 309 Query: 297 AIVYM-VIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADNEDMIATIK 355 I M ++G G +R+ +F L + I+ E FL + E D ++ I + Sbjct: 310 LIPLMALVG----GEIRV------PQFTGHL--LTNIWVCEQFLGKIFEVDEKEKIVRTQ 357 Query: 356 GI 357 GI Sbjct: 358 GI 359 >gi|3914934|sp|O59198|RTCA_PYRHO PROBABLE RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) >gi|3257956|gnl|PID|d1031582 (AP000006) 369aa long hypothetical phosphate cyclase [Pyrococcus horikoshii] Length = 369 Score = 66.0 bits (158), Expect = 4e-10 Identities = 59/280 (21%), Positives = 122/280 (43%), Gaps = 10/280 (3%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+T++G+P++I IR+ NPGL+ + + ++ + N V Sbjct: 40 GGQILRTSVALSTITGEPVRIVNIRANRPNPGLRPQHLHAILALKHLANAEVKGAHVGSR 99 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 +++ P + + ++ + ++ +L F+++K G T ++ Sbjct: 100 ELVFIPKKLEAKEISIDIGTAGSITLVLQALLPAMVFAREKVKFRITGGTDVSWSPPVDY 159 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSL-IAQPITMHEIDRPIISSI 191 + + +EK G+ + ++RG P GGG V V+ + + E R I I Sbjct: 160 LSNVTLFALEKIGIHG-EIRVIRRGHYPKGGGIVEGYVEPWNEKRELVAKEYSR--IIKI 216 Query: 192 TGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQ 251 G++++T + + R AK L L+ + I ++ R PG GI + A++ Sbjct: 217 EGISHATNLPSHVAERQARAAKDELLQLKVPIEIRTEISR----SIGPGSGIVVWAETDC 272 Query: 252 KGWSYFAEDIGDAGSIPEELGEKVACQLLEEISKSAAVGR 291 + +G G E +G++ A +LL+++ V + Sbjct: 273 LRLG--GDALGKKGKPAEIVGKEAAQELLDQLKPGHCVDK 310 >gi|2507354|sp|P46849|RTCA_ECOLI RNA 3'-TERMINAL PHOSPHATE CYCLASE (RNA-3'-PHOSPHATE CYCLASE) (RNA CYCLASE) Length = 339 Score = 50.0 bits (117), Expect = 3e-05 Identities = 66/283 (23%), Positives = 117/283 (41%), Gaps = 21/283 (7%) Query: 13 GSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGT 72 G Q R + L+ ++G+P I IR+G PGL ++ ++ + +V Sbjct: 16 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQ 75 Query: 73 TVIYRPGIIVGGASTHICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEA 132 +++RPG + GG S+ ++ +L F+ + G T + + + Sbjct: 76 RLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADF 135 Query: 133 IKWGLMPVMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSIT 192 I+ L P++ K G+ + L+ G P GGG V V S +A T+ +R I + Sbjct: 136 IRRVLEPLLAKIGIHQ-QTTLLRHGFYPAGGGVVATEV-SPVASFNTLQLGERGNIVQMR 193 Query: 193 GVAYSTRVSPSLVNRMIDG-AKKVLKNLQCEVNITADVWRGENSGKSPGWGITLVAQSKQ 251 G V + R I A + Q N+ D + PG ++L +S+ Sbjct: 194 GEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD--------QGPGNTVSLEVESEN 245 Query: 252 KGWSYFAEDIGDAGSIPEELGEKVACQLLEEISK----SAAVG 290 +F +G+ E VA QL++E+ + +AAVG Sbjct: 246 ITERFFV--VGE----KRVSAEVVAAQLVKEVKRYLASTAAVG 282 Database: nr Posted date: Mar 13, 1999 7:20 PM Number of letters in database: 110,384,460 Number of sequences in database: 361,503 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80147510 Number of Sequences: 361503 Number of extensions: 3519528 Number of successful extensions: 6993 Number of sequences better than 1.0e-03: 14 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 6972 Number of HSP's gapped (non-prelim): 14 length of query: 367 length of database: 110384460 effective HSP length: 55 effective length of query: 312 effective length of database: 90501795 effective search space: 28236560040 effective search space used: 28236560040 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 104 (44.9 bits)