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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs5017142          
refSNP ID: rs5017142
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:113/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss7940393 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs5017142 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss7940393DEVINE_LAB|DB_1_612350fwd/TA/Gtgggacgggacaccctctcttcttgatctcctcccagaaaagacactgaaggagcagagg03/16/0310/10/03113Genomic96 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs5017142|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=113
 CGGTTCTTAT TTATGCCTAT ACAAAGTCCA CAGCCCATGA CGGGCAGCCC TGGAGGCTGT
 TGCCCTGACC TGGCCTCTGG TCCCCCGCTG GGAGGCACGT GGCTCATTTG CATGCCAACT
 CCTGATGGGC CAGCTCCCCA CCTGGCTGCC CGAGCTCCTG AGACtttttt tttttttttt
 ttgagacgga gcctcactct gttgcccagg ctggagtgca gtggtgcgat ctcggctgac
 tgcaacctcc gcctcccagg ctcaagaaat tctcctgcct cagcctcctg agtagctggg
 attgcaggca cgcaccacca cgcccggcta atttttgtat ttttgctaca gacggggttt
 caccatCTGC TGGGACGGGA CACCCTCTCT TCTTGATCTC
 R
 CTCCCAGAAA AGACACTGAA GGAGCAGAGG TGTGGACGCC TCATACTGCG TAAGTTTCTC
 TTGCCTTGAC ACACCTGAGA AAGCTTGGTG TTTGAGCCCT ACNCTCCTCC CCACCTTACT
 CCCACCCCCA AATCCCTTCC TGGGAATTGT CCCGGTTCTT ATTTATGCCA ATCCAAAGTC
 CAAAGTCCAC AGCCCATGAG GGGCAGCCCt ggtccggctg gtcttgaact cccgacctcg
 tgatctgccc acctcagcct cccaaagtgc tgggaataca ggtgtgagcc actgcacctg
 gccACTCCTG AGGCTTTTTA GTGCCTACCC TCAGTGACTT TCTGGTCACC TATGCTGACT
 GCTGCAGAGT AACAGAGGCT ACTGTCACCA GGGCCCTGGG

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs5017142 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NW_001838436.236887436794851plusAalt_assembly_8HuRefHuRefview400
17NW_926828.1455736637686175minusTalt_assembly_1CeleraCeleraview400
17NT_010755.15475433738283567minusTref_assemblyreferencereferenceview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010840
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC016889.28 AC055866.19 NC_000017.9 AC046171.3
UniGene Cluster ID
212356

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
HWPA
ss7940393HapMap-CEUEuropean 120IG 1.000 1.000
HapMap-HCBAsian 88IG 1.000 1.000
HapMap-JPTAsian 90IG 1.000 1.000
HapMap-YRISub-Saharan African 118IG 1.000 1.000

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
27021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
withHapMapFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .