| 3 proteins |
R | COG1548 | Predicted nucleotide-binding enzyme | Help |
|---|
355 letters
1585 = AF0479 (355) =
509 = MJ0840 (330) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF0479
(355 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
AF0479 615 e-176
MJ0840 200 2e-51
MTH834 157 2e-38
BS_ynzC 34 0.26
aq_1255 32 1.3
YIL149c 30 3.7
PH0727 30 4.9
ZyhcI 29 8.3
XF0653 29 8.3
nanK 29 8.3
aq_1496 29 8.3
# >AF0479
# Length = 355
#
# Score = 615 bits (1585), Expect = e-176
# Identities = 312/355 (87%), Positives = 312/355 (87%)
#
# Query: 1 MPAKXXXXXXXXXXXXXILRLKVIPWERIISPFPSERGGSMSSLGIDIGGANLKVASKDG 60
# MPAK ILRLKVIPWERIISPFPSERGGSMSSLGIDIGGANLKVASKDG
# Sbjct: 1 MPAKSSSRTSATSSRRTILRLKVIPWERIISPFPSERGGSMSSLGIDIGGANLKVASKDG 60
#
# Query: 61 WEIIYFPMWREAERLEGKLREIAEKYSTAKAGVVMTAELADFFKSRAEGVEFIAKACKKA 120
# WEIIYFPMWREAERLEGKLREIAEKYSTAKAGVVMTAELADFFKSRAEGVEFIAKACKKA
# Sbjct: 61 WEIIYFPMWREAERLEGKLREIAEKYSTAKAGVVMTAELADFFKSRAEGVEFIAKACKKA 120
#
# Query: 121 FEDVRFLDVEGNLKSDIDNPENFAASNWVASCRFLLEEAYRNFLFVDMGSTTTDIIPVTS 180
# FEDVRFLDVEGNLKSDIDNPENFAASNWVASCRFLLEEAYRNFLFVDMGSTTTDIIPVTS
# Sbjct: 121 FEDVRFLDVEGNLKSDIDNPENFAASNWVASCRFLLEEAYRNFLFVDMGSTTTDIIPVTS 180
#
# Query: 181 KIEAAKTDFERLKRGELIYFGVLRTPVFYVLKEFEGAPLCPEFFAITADVFVTTGDIKEE 240
# KIEAAKTDFERLKRGELIYFGVLRTPVFYVLKEFEGAPLCPEFFAITADVFVTTGDIKEE
# Sbjct: 181 KIEAAKTDFERLKRGELIYFGVLRTPVFYVLKEFEGAPLCPEFFAITADVFVTTGDIKEE 240
#
# Query: 241 DYSCDTPDGKGRSREECMRRLARTVCSDXXXXXXXXXXXXXXXXXXXMIDRLSEVIEHKS 300
# DYSCDTPDGKGRSREECMRRLARTVCSD MIDRLSEVIEHKS
# Sbjct: 241 DYSCDTPDGKGRSREECMRRLARTVCSDLEELGEEKVKELALEAKWAMIDRLSEVIEHKS 300
#
# Query: 301 KIYGLKTVFACGIGEFLIXXXXXXXXXXXRLISELYGDYSKLFPAYAMLKLVEQH 355
# KIYGLKTVFACGIGEFLI RLISELYGDYSKLFPAYAMLKLVEQH
# Sbjct: 301 KIYGLKTVFACGIGEFLIAEACEEAGAECRLISELYGDYSKLFPAYAMLKLVEQH 355
#
#
# >MJ0840
# Length = 330
#
# Score = 200 bits (509), Expect = 2e-51
# Identities = 126/325 (38%), Positives = 181/325 (54%), Gaps = 18/325 (5%)
#
# Query: 44 LGIDIGGANLKVASKDG--WEI--IYFPMWREAERLEGKLREIAEKYSTAKAGVVMTAEL 99
# LGIDIGGAN K+ +G ++I IYFPMW++ + LE L+ + +VMTAEL
# Sbjct: 6 LGIDIGGANTKITEIEGDNYKIHHIYFPMWKKKDELEDLLKNYNDNVDYV--ALVMTAEL 63
#
# Query: 100 ADFFKSRAEGVEFIAKACKKAFE-DVRFLDVEGNLKSDIDNPENF---AASNWVASCRFL 155
# AD +K++ EGVE I +KAF V DV GN + + +N+ +ASNW A+ +F+
# Sbjct: 64 ADCYKTKKEGVEDIIDKVEKAFNCPVYVFDVNGNFLTSEEAKKNYLDVSASNWNATAKFV 123
#
# Query: 156 LEEAYRNFLFVDMGSTTTDIIPVTSK-IEAAKTDFERLKRGELIYFGVLRTPVFYVLK-- 212
# E + + VDMGSTTTDIIP+ K + A KTD +RL +L+Y G LRTPV ++
# Sbjct: 124 AEFIKDSCILVDMGSTTTDIIPIKDKEVLAEKTDLDRLMNNQLVYVGTLRTPVSFLANKI 183
#
# Query: 213 EFEG--APLCPEFFAITADVFVTTGDIKEEDYSCDTPDGKGRSREECMRRLARTVCSDXX 270
# EF G L E+FAITAD+ + I EEDY+CDTPDG G+ E C+ RL R +C+D
# Sbjct: 184 EFRGKLTNLSSEYFAITADISLILNKITEEDYTCDTPDGAGKDFESCLTRLVRVLCADRE 243
#
# Query: 271 XXXXXXXXXXXXXXXXXMIDRLSEVIEHKSKIYGLKTVFACGIGEFLIXXXXXXXXXXXR 330
# +++ + E ++ +K Y L V G+GE ++
# Sbjct: 244 MVKDDELIDFANKLYNKLLELIRENVDTIAKRYNLNDVVITGLGEEILKDALDEYNIIS- 302
#
# Query: 331 LISELYG-DYSKLFPAYAMLKLVEQ 354
# I E YG D S P++A+ KL+++
# Sbjct: 303 -IKETYGKDVSLATPSFAVAKLLQK 326
#
#
# >MTH834
# Length = 343
#
# Score = 157 bits (397), Expect = 2e-38
# Identities = 108/295 (36%), Positives = 151/295 (50%), Gaps = 22/295 (7%)
#
# Query: 41 MSSLGIDIGGANLKVA----SKDG------WEIIYFPMWREAERLEGKLREIA--EKYST 88
# M G DIGGAN +A DG + Y PMW + L L E+ + +
# Sbjct: 1 MKIAGFDIGGANTDMAIIDFGSDGDMKEVRVDFRYLPMWLRKDELAETLLEMVGDDLHEL 60
#
# Query: 89 AKAGVVMTAELADFFKSRAEGVEFIAKACKKAFE-DVRFLDVEGNLKSD--IDNPENFAA 145
# GV MTAEL D + S+A GV I + AF+ V ++ + G + + + +P N AA
# Sbjct: 61 EGVGVCMTAELVDAYPSKAAGVADIIDRVEGAFDVPVAYVSLSGMVDASEALADPMNIAA 120
#
# Query: 146 SNWVASCRFLLEEAYRNFLFVDMGSTTTDIIPVTSKIEAAK--TDFERLKRGELIYFGVL 203
# +NWVA+ + + + + VD+GSTTTDIIPV EAA+ D ERL GEL+Y G L
# Sbjct: 121 ANWVATSQ-IASAMSSDCIMVDVGSTTTDIIPVKDGFEAARGRNDLERLSTGELVYTGTL 179
#
# Query: 204 RTPVFYVLKEF----EGAPLCPEFFAITADVFVTTGDIKEEDYSCDTPDGKGRSREECMR 259
# RT V ++ + + E FA+TADV G+I E DY+C TPDG G+S EECM
# Sbjct: 180 RTNVATIVDRVPLQDKWFRVSSELFAVTADVHRVLGNIGESDYTCSTPDGAGKSVEECML 239
#
# Query: 260 RLARTVCSDXXXXXXXXXXXXXXXXXXXMIDRLSEVIEHKSKIYGLKTVFACGIG 314
# R+AR +C+D I +++E I S+ GL+ V G+G
# Sbjct: 240 RIARVLCADLELLSPGDVLDVAEYIYHQQILKIAEGIAEVSEREGLEEVVTTGLG 294
#
#
# >BS_ynzC
# Length = 77
#
# Score = 34.3 bits (77), Expect = 0.26
# Identities = 19/55 (34%), Positives = 29/55 (52%)
#
# Query: 78 KLREIAEKYSTAKAGVVMTAELADFFKSRAEGVEFIAKACKKAFEDVRFLDVEGN 132
# K+ I E + AKAGV+ E A+ K R E ++ + K + V+ +D EGN
# Sbjct: 6 KIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVKIIDPEGN 60
#
#
# >aq_1255
# Length = 689
#
# Score = 32.0 bits (71), Expect = 1.3
# Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 4/77 (5%)
#
# Query: 59 DGWEIIYFPMWREAERLEGKLREIAEKYSTAKAGVVMTAELADFF----KSRAEGVEFIA 114
# + +E + P + +E LE L E+A+KY + KA EL +F + + + E
# Sbjct: 161 EAYEEKHVPRLKYSEELEEFLSEVAQKYKSLKAQPFTKHELIEFALRDKELQKKFKEKYG 220
#
# Query: 115 KACKKAFEDVRFLDVEG 131
# K KK ED R+ G
# Sbjct: 221 KEFKKYLEDERYAFAHG 237
#
#
# >YIL149c
# Length = 1679
#
# Score = 30.4 bits (67), Expect = 3.7
# Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
#
# Query: 56 ASKDGWEIIYFPMWREAERL--------EGKLREIAEKYSTAKAGVVMTAELADFFKSRA 107
# +S D +E + M +E +R+ E KL+E K ++++A +
# Sbjct: 1380 SSSDAFEKLKVNMEKEKDRIIDERTKEFEKKLQETLNKSTSSEA-------------EYS 1426
#
# Query: 108 EGVEFIAKACKKAFEDV---RFLDVEGNLKSDIDNPENFAASNWVASCRFLLEEAYRNFL 164
# + +E + K K +ED R + E NLK I P ++ + LEE +R L
# Sbjct: 1427 KDIETLKKEWLKEYEDETLRRIKEAEENLKKRIRLPSEERIQKIISKRKEELEEEFRKKL 1486
#
# Query: 165 FVDMGSTT 172
# + GS T
# Sbjct: 1487 KENAGSLT 1494
#
#
# >PH0727
# Length = 278
#
# Score = 30.0 bits (66), Expect = 4.9
# Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
#
# Query: 158 EAYRNFLFVDMGSTTTDIIPVTSKIEAAKTDFERLKRGELIYFGVLRTP 206
# E+Y N+ GS D++ V + +A D E+ KR +YF L++P
# Sbjct: 189 ESYANYAAPTFGSLDVDVVVVVAPSKAVIFDGEQYKRAVSLYFN-LKSP 236
#
#
# >ZyhcI
# Length = 302
#
# Score = 29.3 bits (64), Expect = 8.3
# Identities = 12/21 (57%), Positives = 16/21 (76%)
#
# Query: 36 ERGGSMSSLGIDIGGANLKVA 56
# E+GG+M++L IDIGG L A
# Sbjct: 7 EKGGAMTTLAIDIGGTKLAAA 27
#
#
# >XF0653
# Length = 212
#
# Score = 29.3 bits (64), Expect = 8.3
# Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 4/54 (7%)
#
# Query: 152 CRFLLEEAYRNFLFVDMGSTTTDIIPVTSKIEAAKTDFERLKRGELIYFGVLRT 205
# C L+ YR+ L + + T+ ++ + ++ K D E+L G+L++FG R+
# Sbjct: 118 CSGLVSYVYRDALDLRLPRTSYEL----AAVQGPKIDAEQLTTGDLVFFGSARS 167
#
#
# >nanK
# Length = 302
#
# Score = 29.3 bits (64), Expect = 8.3
# Identities = 12/21 (57%), Positives = 16/21 (76%)
#
# Query: 36 ERGGSMSSLGIDIGGANLKVA 56
# E+GG+M++L IDIGG L A
# Sbjct: 7 EKGGAMTTLAIDIGGTKLAAA 27
#
#
# >aq_1496
# Length = 286
#
# Score = 29.3 bits (64), Expect = 8.3
# Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
#
# Query: 45 GIDIGGANLKVASKDGWEIIYF--PMWREAERLEGKLREIAEKYSTAKAGVVMTAELA-D 101
# GIDIGG +KV +DG + ++ + ++ E L K+RE+ + + + G+ + + +
# Sbjct: 4 GIDIGGTFIKVLWEDGKKEKHYIKDLKKDREALMEKIREVIKAGNPSGVGIAVAGFTSLN 63
#
# Query: 102 FFKSRAEGVEFIAKA-CKKAFEDVRFLDVEGN 132
# ++ + + K +K ED+ V GN
# Sbjct: 64 GIVYKSPNIPALDKTDFRKVLEDINIPFVVGN 95
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,797,899
Number of Sequences: 108091
Number of extensions: 776152
Number of successful extensions: 1929
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 11
length of query: 355
length of database: 33,061,072
effective HSP length: 107
effective length of query: 248
effective length of database: 21,495,335
effective search space: 5330843080
effective search space used: 5330843080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
S2: 64 (29.3 bits)