R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|330179|gb|AAA45802.1| (M74421) ORF2 [human herpesvirus 1]
Length = 107
Frame 1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.28, P = 0.24
Identities = 26/88 (29%), Positives = 38/88 (43%), Frame = +1
Query: 109 TAQHSISKPSLFSPSATLRHGPAPQPPTSPRARHQRKQFPPKTAT-QQGKQNESPNRLPP 285
T HS + P +P+ T H AP P +P H PP++ +QGK + P
Sbjct: 12 THPHSHAPPLPRTPTPTHPHSHAPPLPRTPTPTHPHSHAPPRSIQHRQGKDTKVNLYFPI 71
Query: 286 PSXSVASYG-APTXLVRSPI*KP*AMVFP 369
S + S+ PT R + P + FP
Sbjct: 72 DSKNPLSFLLGPTLKTRWCV-VPVSFTFP 99
>gi|3914142|sp|P93329|NO20_MEDTR EARLY NODULIN 20 PRECURSOR (N-20)
>gi|1771351|emb|CAA67830.1| (X99467) ENOD20 [Medicago truncatula]
Length = 268
Frame 1 hits (HSPs): ________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: PLASTOCYANIN-LIKE. 23..268
Entrez Domain: POLY-PRO. 136..145
PRODOM PD065375: NO20_MEDTR 1..25
PRODOM PD003122: 27..126
PRODOM PD000540: H1(18) O76786(11) TONB(10) 135..240
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.69, P = 0.50
Identities = 28/77 (36%), Positives = 39/77 (50%), Frame = +1
Query: 100 IKRTAQHSISKPSLFSPSATLRHGPAPQPPTSPRARHQRKQFP--PKTATQQGKQ---NE 264
I + S+ P SPS + P+P P ++P H RK+ P P + K +E
Sbjct: 151 IPHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTP-IPHPRKRSPASPSPSPSLSKSPSPSE 209
Query: 265 SPNRLPPPSXSVASYGAPT 321
SP+ P PS SVAS AP+
Sbjct: 210 SPSLAPSPSDSVASL-APS 227
>gi|1066104|gb|AAC13878.1| (U39735) high molecular weight basic nuclear protein
[Pleuronectes americanus]
Length = 326
Frame 3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 326
0 150 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.76, P = 0.53
Identities = 42/161 (26%), Positives = 70/161 (43%), Frame = +3
Query: 12 SETRTPPPQTLSHTNCGVSRNPRRFSFPHHKTHSTAQHLQTFPFLSFRYSAPWPSAAAPN 191
S R+ PP+ T +++PRR P + + ++ P S R PS +
Sbjct: 149 SPKRSNPPKRSVKTPKTRAKSPRRSKSPKRRVQTPKMRAKS-PMRS-RKRPRSPSRSTSP 206
Query: 192 LSQSQTPKETIPTKNRNTTRETERVAESPSAAESQRGELRSSXXPRTESNLKTLGHGVSS 371
+ +SQ+PK + K + T ++ + SPS ++S + RS P+T +
Sbjct: 207 M-RSQSPKRRV--KRQKMTAKSLMRSRSPSRSKSPK---RSVKTPKTRAKSPRRSKSPKR 260
Query: 372 SVENPCCAVSD*RFARGALPHLIRVPKPKVRRPXDLLKRKL 494
V+ P V + R P R+PKPK R P KR++
Sbjct: 261 RVQTPKRRVQTPK-RRVQTPKS-RIPKPKRRVPTP--KRRV 297
>gi|100212|pir||S14976 extensin class II (clones u1/u2) - tomato
>gi|1345539|emb|CAA39217.1| (X55687) extensin (class II)
[Lycopersicon esculentum]
Length = 75
Frame 1 hits (HSPs): __________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
__________________
Annotated Domains:
DOMO DM01369: PROLINE-RICHPROTEIN 1..65
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.85, P = 0.57
Identities = 14/40 (35%), Positives = 21/40 (52%), Frame = +1
Query: 172 PAPQPPTSPRARHQRKQFPPKTATQQGKQNESPNRLPPPS 291
P+P PPT P H + Q PP T + ++P+ PP+
Sbjct: 4 PSPPPPT-PSYEHPQPQSPPPPPTPSYEHPKTPSHPTPPT 42
>gi|9827832|emb|CAB97921.1| (AL160493) possible extensin class ii
precursor(cell wall hydroxyproline-rich glycoprotein) [Leishmania
major]
Length = 508
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 508
0 150 300 450
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 1.8, P = 0.84
Identities = 27/80 (33%), Positives = 35/80 (43%), Frame = +1
Query: 67 RETRDVSLFHTIKRTAQ-HSISKPSLF--SPSATLRHGPAPQPPTSPRARHQRKQFPPKT 237
R T SL H + R + H +P +P A + G P P +P A HQR Q PP+
Sbjct: 123 RSTSAASLLHVLVRLLRXHQRGQPPPRPRTPPAEHQRGKPPPRPRTPPAEHQRGQPPPRP 182
Query: 238 ATQQGKQNESPNRLPPPSXSVAS 306
T + PPP AS
Sbjct: 183 RTPPAEHQRGQ---PPPRPRYAS 202
>gi|7298643|gb|AAF53859.1| (AE003664) CG16772 gene product [Drosophila
melanogaster]
Length = 311
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | | 311
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 3.5, P = 0.97
Identities = 28/89 (31%), Positives = 42/89 (47%), Frame = +3
Query: 15 ETRTPPPQTLSHTNCGVSR-NPRRFSFPHHKTHSTAQHLQTFPFLSFRYSAPWP----SA 179
E+ TP P+T + T + P + PH HS H +P+ +Y P P SA
Sbjct: 116 ESTTPEPETTTPTTTTTTTPKPHKHE-PHFHPHSYP-HPHPYPY-PIQYPYPHPGVIFSA 172
Query: 180 AAPNLSQSQTPKETIPTKNRNTTRETERVAESPS 281
A P L TP T P ++ +E+ ++ PS
Sbjct: 173 AGPKL----TPPSTTPPTAKDADKESPELSGYPS 202
>gi|11862955|dbj|BAB19336.1| (AP003044) hypothetical protein [Oryza sativa]
Length = 167
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 167
0 50 100 150
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 3.7, P = 0.98
Identities = 18/48 (37%), Positives = 21/48 (43%), Frame = +1
Query: 163 RHGPAPQPPTSPRARHQRKQFPPKTATQQGKQNESPNRLPPPSXSVAS 306
RH PP + R H R PP TA Q P PP + +VAS
Sbjct: 67 RHADIGNPPPTHRRPHHRACLPPCTAAQAAFATAPPPHKPPDAAAVAS 114
>gi|2126663|pir||S60811 M protein precursor - Streptococcus pyogenes (serotype
M36) (fragment)
Length = 96
Frame 3 hits (HSPs): ___________________________
Annotated Domains: ______________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
__________________
Annotated Domains:
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 53..74
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 60..81
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 67..88
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 74..95
__________________
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 4.4, P = 0.99
Identities = 17/52 (32%), Positives = 27/52 (51%), Frame = +3
Query: 195 SQSQTPKETI---PTKNRNTTRETERVAESPSAAESQRGELRSSXXPRTESN 341
S S+T ++TI KN N T+E E++ E S++ +L + TE N
Sbjct: 34 SNSETARQTINDYEIKNHNLTQENEKLTEQNKELTSEKEKLTTDNGRLTEQN 85
>gi|126466|sp|P17589|LRP2_HSV1F LATENCY-RELATED PROTEIN 2 >gi|74038|pir||WMBEL2
latency-related protein 2 - human herpesvirus 1 (strain F)
>gi|330135|gb|AAA45800.1| (J04323) latency-related protein 2 [human
herpesvirus 1]
Length = 107
Frame 1 hits (HSPs): _________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
__________________
Annotated Domains:
Entrez Domain: 3 X 17 AA TANDEM REPEATS. 2..49
Entrez Repetitive region: 1. 2..17
Entrez Repetitive region: 2. 18..33
Entrez Repetitive region: 3. 34..49
PRODOM PD015574: 1..106
__________________
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 4.6, P = 0.99
Identities = 25/88 (28%), Positives = 37/88 (42%), Frame = +1
Query: 109 TAQHSISKPSLFSPSATLRHGPAPQPPTSPRARHQRKQFPPKTAT-QQGKQNESPNRLPP 285
T HS + P +P+ H AP P +P H PP++ +QGK + P
Sbjct: 12 THPHSHAPPLPRTPTPAHPHSHAPPLPRTPTPTHPHSHAPPRSIQHRQGKDTKVNLYFPI 71
Query: 286 PSXSVASYG-APTXLVRSPI*KP*AMVFP 369
S + S+ PT R + P + FP
Sbjct: 72 DSKNPLSFLLGPTLKTRWCV-VPVSFTFP 99
>gi|11034580|dbj|BAB17104.1| (AP002866) contains ESTs
C26436(C12323),AU082913(C3020),D23568(C3020)~similar to Arabidopsis
thaliana chromosome 3, F21M11.17~unknown protein [Oryza sativa]
Length = 245
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 5.2, P = 0.99
Identities = 20/76 (26%), Positives = 34/76 (44%), Frame = +3
Query: 27 PPPQTLSHTNCGVSRNPRRFSFPHHKTHSTAQHLQTFPFLSFRYSAPWPSAAAPNLSQSQ 206
PPP +S T+ G++ +P + FP + T PF + + + AA N++ S
Sbjct: 153 PPPSPVSPTDSGIAASPFKAEFPSQDQPAADTGADTTPFKA-EFPSSHEQPAADNVASSP 211
Query: 207 TPKETIPTKNRNTTRE 254
PK + + T E
Sbjct: 212 PPKAEAAPQEQPTAAE 227
>gi|10436960|dbj|BAB14941.1| (AK024637) unnamed protein product [Homo sapiens]
Length = 143
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 5.3, P = 0.99
Identities = 24/67 (35%), Positives = 32/67 (47%), Frame = +1
Query: 118 HSISKPSLFSPSATLRHGPAPQPPTS-PR-ARHQRKQFPPKTATQQGKQNESPNRLPPPS 291
H KP L +P A+L GP P PP S P A P+ G Q +P+ P P
Sbjct: 45 HLPGKPGLGTPCASLTLGP-PTPPASMPNLAEATLADVMPRKDEHMGHQFLTPDEAPSPP 103
Query: 292 XSVASYGAP 318
+A+ G+P
Sbjct: 104 RLLAA-GSP 111
>gi|533560|gb|AAA99557.1| (U11941) emml gene product [Streptococcus pyogenes]
Length = 97
Frame 3 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 5.8, P = 1.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Frame = +3
Query: 195 SQSQTPKETI---PTKNRNTTRETERVAESPSAAESQRGELRSSXXPRTESN 341
S S+T ++TI KN N T+E E++ E S++ +L + TE N
Sbjct: 34 SNSETARQTINDYEIKNHNLTQENEKLTEQNKELTSEKEKLTTDNGRLTEQN 85
>gi|12018147|gb|AAG45420.1|AF309494_1 (AF309494) vegetative cell wall protein
gp1 [Chlamydomonas reinhardtii]
Length = 555
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 5.9, P = 1.0
Identities = 37/117 (31%), Positives = 48/117 (41%), Frame = +1
Query: 145 SPSATLRHGPAPQPPTSPRARHQRKQFPPKTATQQGKQNESPNRLPPPSXSVASYGAPT- 321
SP + + PAP PP SP PP A + SP+ P PS S + +P+
Sbjct: 309 SPPSPVPPSPAPVPP-SPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSP 367
Query: 322 XLVRSPI*KP*AMVFPHRLKTLAVQSPTDDLQGELYRT*FGCXSRKXGDRXISX---KGN 492
+ SP KP +L DDL G R G SR G+ I+ KGN
Sbjct: 368 SPIPSPSPKPSPSPVAVKLVWADDAIAFDDLNGTSTRP--GSASRMVGEPDIAGTKCKGN 425
>gi|3421391|gb|AAC32195.1| (AF082158) putative cysteine synthase [Arabidopsis
thaliana]
Length = 141
Frame 3 hits (HSPs): _______________________________________
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 29/108 (26%), Positives = 49/108 (45%), Frame = +3
Query: 84 FSFPHHKTHSTAQHLQTFPFLSFRYSAPWPSAAAPNLSQSQTPKETIPTKNRNTTRETER 263
FSF H + S A ++T P SF A ++ S+S+T ++ P T E +
Sbjct: 34 FSFHHDSSSSLA--VRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEEQH 90
Query: 264 VAESPSAAESQRGELRSSXXPRTESNLKTLG--HGVSSSVEN--PCCAVSD 404
+AES + ++ P N T G +++ +E+ PC +V D
Sbjct: 91 IAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKD 141
Score = 40 (14.1 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Frame = +2
Query: 29 SPANSLSHKLWRFAKPETFLFS 94
SP ++ KL RF+ + LFS
Sbjct: 14 SPLGRITSKLHRFSTAKLSLFS 35
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.319 0.130 0.402
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.324 0.136 0.436
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.334 0.142 0.444
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.158 0.590
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.145 0.499
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.326 0.140 0.461
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 210 198 10. 76 3 12 22 0.093 35
31 0.10 38
+2 0 210 196 10. 76 3 12 22 0.092 35
31 0.10 38
+1 0 210 195 10. 76 3 12 22 0.091 35
31 0.10 38
-1 0 210 194 10. 76 3 12 22 0.091 35
31 0.10 38
-2 0 210 197 10. 76 3 12 22 0.092 35
31 0.10 38
-3 0 210 197 10. 76 3 12 22 0.092 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 14
No. of states in DFA: 592 (58 KB)
Total size of DFA: 216 KB (256 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 221.31u 0.96s 222.27t Elapsed: 00:00:46
Total cpu time: 221.34u 0.97s 222.31t Elapsed: 00:00:46
Start: Mon Oct 1 19:27:42 2001 End: Mon Oct 1 19:28:28 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000