| [94025-94109 (1-85)] |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
|---|---|---|---|---|---|---|---|---|---|---|
| 94025 | tnp | hypothetical | pCD01 | putative transposase similar to corresponding CDS from the Y. pestis CO92 (ref:NC_003131.1) and Y. pestis KIM pCD1 (EMBL:AF053946, AF074612) (340 aa). similar to many others, eg: TRA0_ECOLI (EMBL:X14793), istA, E.coli transposase for insert sequence element IS21 (390 aa). contain pfam match to entry PF00239 recombinase, Site-specific recombinases. contain probable helix-turn-helix motif at aa 19-40. Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)). Contains IS21-like element transposase, HTH domain (Interpro|IPR007101) | genbank | 45478503 | NP_995330.1 | 340 | 87 | 1109 |
| 94026 | hypothetical | pCD02 | putative ATP-binding protein probable transposase; similar to corresponding CDS from Y. pestis CO92 pCD1 (ref: NC_003131.1) and Y. pestis KIM5 pCD1 (EMBL:AF053946, AF074612), (259 aa). similar to many others e.g. ISTB_ECOLI (EMBL:X14793), istB, E.coli transposase for insertion sequence element IS21 (265 aa). contains PS00017 ATP/GTP-biding site motif A (P-loop). Contains Chaperonin clpA/B (Interpro|IPR001270). Contains ATP/GTP-binding site motif A (P-loop) (Interpro|IPR001687, Molecular Function: ATP binding (GO:0005524)). Contains Bacterial chromosomal replication initiator protein, DnaA (Interpro|IPR001957, Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275)). Contains IstB-like ATP-binding protein (Interpro|IPR002611). Contains AAA ATPase (Interpro|IPR003593, Mo | genbank | 45478504 | NP_995331.1 | 260 | 1106 | 1888 | |
| 94027 | hypothetical | pCD03 | hypothetical protein Best Blastp hit =gi|16082768|ref| NP_395214.1| (NC_003131) hypothetical protein YPCD1.82c (135 aa) [Yersinia pestis], gi|5832500|emb|CAB54959.1| (AL117189) hypothetical protein YPCD1.82c (135 aa) [Yersinia pestis],lacking the first 3 aa. | genbank | 45478505 | NP_995332.1 | 132 | 1959 | 2357 | |
| 94028 | hypothetical | pCD04 | possible transposase Best Blastp hit =gi|16082767|ref| NP_395213.1| (NC_003131) YPCD1.81, possible transposase remnant, len: 78 aa; and similar to some transposase protein in different species e.g. gi|18026936|gb|AAL55699.1|AF246719_3 (AF246719) hypothetical transposase from E.coli (81 aa). | genbank | 45478506 | NP_995333.1 | 134 | 2229 | 2633 | |
| 94029 | hypothetical | pCD05 | endonuclease-like protein Best Blastp hit = pir||T42844 endonuclease homolog (122 aa)- Yersinia pestis plasmid pCD1;. Contains Phospholipase D/Transphosphatidylase (Interpro|IPR001736, Molecular Function: enzyme (GO:0003824), Biological Process: metabolism (GO:0008152)) | genbank | 45478507 | NP_995334.1 | 122 | 2654 | 3022 | |
| 94030 | repB | hypothetical | pCD06 | replication protein RepB-like protein Best Blastp hit =gi|10955601|ref| NP_052445.1| (NC_002120) RepB [Yersinia enterocolitica], gi| 16082766|ref|NP_395212.1| (NC_003131) putative replication transcriptional regulator [Yersinia pestis] gi|11278474|pir ||T43617 replication protein repB - Yersinia pestis plasmid pCD1, gi|155566|gb|AAA98436.1| (M55182) replication protein [Plasmid pYVe439-80] gi|2996277|gb|AAC62600.1| (AF053946) replication protein RepB homolog [Yersinia pestis], gi|38220 40|gb|AAC69760.1| (AF074612) replication protein [Yersinia pestis] gi|4324388|gb|AAD16865.1| (AF102990) RepB [Yersinia enterocolitica], gi|5832498|emb|CAB54956.1| (AL117189) putative replication transcriptional regulator [Yersinia pestis ] | genbank | 45478508 | NP_995335.1 | 84 | 3160 | 3414 |
| 94031 | tap | hypothetical | pCD07 | putative repA translation protein similar to corresponding CDS from Y. pestis CO92 pCD1(AL117189) and Y. pestis KIM5 pCD1 (EMBL:AF053946, AF074612) (24 aa). Similar to other Tap proteins e.g. TR:P72429 (EMBL:U64797), tap, from Salmonella enteritidis virulence plasmid (25 aa) | genbank | 45478509 | NP_995336.1 | 24 | 3656 | 3730 |
| 94032 | repA | hypothetical | pCD08 | replication protein RepA-like protein best blastp hit = ref|NP_395210.1| (NC_003131) putative replication initiation protein [Yersinia pestis], pir||T42847 replication protein - Yersinia pestis plasmid pCD1, gb|AAC69762.1| (AF074612) replication protein [Yersinia pestis], emb|CAB54954.1| (AL117189) putative replication initiation protein [Yersinia pestis], len = 288 | genbank | 45478510 | NP_995337.1 | 288 | 3723 | 4589 |
| 94033 | hypothetical | pCD09 | hypothetical protein Best Blastp hit = pir||T42848 hypothetical protein Y0006 - Yersinia pestis plasmid pCD1,gb|AAC69763.1| (AF074612) unknown [Yersinia pestis], len:72 aa | genbank | 45478511 | NP_995338.1 | 72 | 5416 | 5634 | |
| 94034 | hypothetical | pCD10 | hypothetical protein | genbank | 45478512 | NP_995339.1 | 80 | 5934 | 6176 | |
| 94035 | hypothetical | pCD12 | hypothetial protein Best Blastp hit =gi|16082761|ref|NP_395207.1| (NC_003131) hypothetical protein YPCD1.73c [Yersinia pestis], gi|5832493|emb|CAB54950.1| (AL117189) hypothetical protein YPCD1.73c [Yersinia pestis] | genbank | 45478513 | NP_995340.1 | 149 | 6747 | 7196 | |
| 94036 | ypkA | hypothetical | pCD13 | putative targeted effector protein kinase YpkA Best Blastp hit =gi|16082760|ref| NP_395206.1| (NC_003131) putative targeted effector protein kinase [Yersinia pestis], gi|5832492|emb|CAB54949.1| (AL117 189) putative targeted effector protein kinase [Yersinia pestis] ;. Contains Protein kinase (Interpro|IPR000719, Molecular Function: protein kinase (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468)). Contains Serine/Threonine protein kinase (Interpro|IPR002290, Molecular Function: protein serine/threonine kinase (GO:0004674), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468)). Contains Yersinia serine/threonine protein kinase (Interpro|IPR003547, Molecular Function: protein serine/threonine kinase (GO:0004674), Biological Process: protein amino acid phosphorylation (GO:0006468)) | genbank | 45478514 | NP_995341.1 | 732 | 7204 | 9402 |
| 94037 | yopJ | hypothetical | pCD14 | putative targeted effector protein YopJ Best Blastp hit =gi|16082759|ref|NP_395205.1| (NC_003131) putative targeted effector protein [Yersinia pestis] gi|5832491|emb|CAB54948.1| (AL117189) putative targeted effector protein [Yersinia pestis] ;. Contains Peptidase family C55 (Interpro|IPR005083) | genbank | 45478515 | NP_995342.1 | 288 | 9798 | 10664 |
| 94038 | hypothetical | pCD15 | putative transposase protein Best Blastp hit = ref|NP_395203.1|>gi|16082757|ref| NP_395203.1| (NC_003131) YPCD1.69, probable transposase remnant, len: 193 aa; similar to TR:Q46612 (EMBL:X78052), putative transposase ORFB from Enterobacter agglomerans IS1222 (276 aa). The N-terminus and upstream ORFA are not pr> gi|5832489|emb|CAB54946.1| ( AL117189) YPCD1.69, probable transposase remnant, len: 193 aa; similar to TR:Q46612 (EMBL:X78052), putative transposas e ORFB from Enterobacter agglomerans IS1222 (276 aa). ; and similar to some transposase proteins e.g. ref|NP_395223.1| (NC_003131) putative transposase [Yersinia pestis]; . Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)) | genbank | 45478516 | NP_995343.1 | 178 | 11250 | 11786 | |
| 94039 | hypothetical | pCD16 | hypothetical protein Best Blastp hit = gi|16082756|ref|NP_395202.1| (NC_003131) YPCD1.68c, Y0012, hypothetical protein, len: 68 aa; similar to corresponding CDS from Y.pes tis KIM5 pCD1 (EMBL:AF074612) (68 aa); gi|11354275|pir||T42852 hypothetical protein Y0012 - Yersinia pestis plasmid pCD1 gi|38 22047|gb|AAC69767.1| (AF074612) unknown [Yersinia pestis], gi|5832488|emb|CAB54945.1| (AL117189) YPCD1.68c, Y0012, hypo thetical protein, len: 68 aa; similar to corresponding CDS from Y. pestis KIM5 pCD1 (EMBL:AF074612) (68 aa) | genbank | 45478517 | NP_995344.1 | 68 | 11858 | 12064 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 94040 | yopH | hypothetical | pCD17 | putative protein-tyrosine phosphatase Yop effector YopH Best Blastp hit = gi|16082755|ref|NP_395201.1| (NC_003131) putative protein-tyrosine phosphatase Yop effector [Yersinia pestis], gi|11281978|pir||T43622 targeted effector protein YopH - Yersinia pestis plasmid pCD1 gi|2996283|gb|AAC62606.1| (AF053946) YopH [Yersinia pestis], gi|3822048|gb|AAC69768.1| (AF074612) targeted effector protein [Yersinia pestis], gi|5832487|emb|CAB54944.1| (AL117 189) putative protein-tyrosine phosphatase Yop effector [Yersinia pestis];. Contains Tyrosine specific protein phosphatase (Interpro|IPR000242, Molecular Function: protein tyrosine phosphatase (GO:0004725), Biological Process: protein amino acid dephosphorylation (GO:0006470)). Contains Tyrosine specific protein phosphatase and dual specificity protein phosphatase (Interpro|IPR000387, Molecular Function: protein phosphatase (GO:0004721), Biological Process: protein amino acid dephosphorylation (GO:0006470)). Contains Salmonella/Yersinia modular tyrosine | genbank | 45478518 | NP_995345.1 | 468 | 12347 | 13753 |
| 94041 | ORFC | hypothetical | pCD18 | putative transposase Best Blastp hit = pir||T42854 probable transposase - Yersinia pestis plasmid pCD1, gb|AAC69769.1| (AF074612) putative transposase (123 aa)[Yersinia pestis] ; ref|NP_395199.1| (NC_003131) putative transposase [Yersinia pestis] emb|CAB54942.1| (AL117189) putative transposase [Yersinia pestis] (102 aa) | genbank | 45478519 | NP_995346.1 | 102 | 14265 | 14573 |
| 94042 | ORFB | hypothetical | pCD19 | putative transposase Best Blastp hit =gi|16082752|ref|NP_395198.1| (NC_003131) putative transposase ORFB [Yersini a pestis] gi|5832484|emb|CAB54941.1| (AL117189) putative transposase ORFB [Yersinia pestis] | genbank | 45478520 | NP_995347.1 | 144 | 14570 | 15004 |
| 94043 | ORFA | hypothetical | pCD20 | putative transposase ORFA Best Blastp hit =gi|16082751|ref|NP_395197.1| (NC_003131) putative transposase ORFA [Yersini a pestis] gi|400176|sp|Q00931|LCRS_YERPE Low calcium response locus protein S, gi|11354319|pir||T43562 probable IS element protein - Yersinia pestis plasmid pCD1, gi|155470|gb|AAA 27655.1| (M83986) lcrS [Yersinia pseudotuberculosis] gi|2996256|gb|AAC62579.1| (AF053946) low calcium response locus proteins homolog [Yersinia pestis] gi|3822107|gb|AAC69827.1 | (AF074612) putative IS element protein [Yersinia pestis], gi|5832483|emb|CAB54940.1| (AL117189) putative transposase ORFA [Yersinia pestis];. Contains Transposase, IS3/IS911family (Interpro|IPR002514) | genbank | 45478521 | NP_995348.1 | 88 | 15028 | 15294 |
| 94044 | yscM | hypothetical | pCD21 | putative type III secretion regulatory protein YscM Best Blastp hit = gi|16082750|ref|NP_395196.1| (NC_003131) putative type III secretion regulatory protein [Yersinia pestis] gi|401695|sp|Q00930|yscM_YER PE Yop proteins translocation protein M (Low calcium response locus protein Q) gi|282058|pir||B41877 LCR negative regulator lcrQ [similarity] - Yersinia pseudotuberculosis, gi|11 281982|pir||T43563 LCR negative regulator LcrQ - Yersinia pestis plasmid pCD1, gi|155469|gb|AAA27654.1| (M83986) lcrQ [ Yersinia pseudotuberculosis], gi|2996263|gb|AAC62586.1| (AF0 53946) Yop proteins translocation protein M homolog [Yersinia pestis], gi|3822052|gb|AAC69772.1| (AF074612) LCR negative regulator [Yersinia pestis] gi|5832482|emb|CAB54939.1| (A L117189) putative type III secretion regulatory protein [Yersinia pestis] | genbank | 45478522 | NP_995349.1 | 115 | 15842 | 16189 |
| 94045 | yscL | hypothetical | pCD22 | putative typee III secretion protein YscL Best Blastp hit =gi|16082749|ref|NP_395195.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|401694|sp|Q00928|yscL_YERPE Yop proteins translocation protein L (Low calcium response locus protein KC), gi|11354332|pir||T43564 type III secretion protein yscL - Yersinia pestis plasmid pCD1 gi|155468|gb|AAA27653 .1| (M83986) lcrKc [Yersinia pseudotuberculosis], gi|2996273 |gb|AAC62596.1| (AF053946) Yop proteins translocation protein L homolog [Yersinia pestis], gi|3822053|gb|AAC69773.1| ( AF074612) type III secretion protein [Yersinia pestis], gi|5 832481|emb|CAB54938.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478523 | NP_995350.1 | 221 | 16414 | 17079 |
| 94046 | yscK | hypothetical | pCD23 | putative type III secretion protein YscK Best Blastp hit =gi|16082748|ref|NP_395194.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|401693|sp|Q00927|yscK_YERPE Yop prot eins translocation protein K (Low calcium response locus protein KB), gi|11282516|pir||T43565 type III secretion protein yscK - Yersinia pestis plasmid pCD1 gi|155467|gb|AAA27652 .1| (M83986) lcrKb [Yersinia pseudotuberculosis], gi|2996282 |gb|AAC62605.1| (AF053946) Yop proteins translocation prote in K homolog [Yersinia pestis], gi|3822054|gb|AAC69774.1| (A F074612) type III secretion protein [Yersinia pestis], gi|58 32480|emb|CAB54937.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478524 | NP_995351.1 | 216 | 17025 | 17675 |
| 94047 | yscJ | hypothetical | pCD24 | putative type III secretion lipoprotein YscJ Best Blastp hit =gi|16082747|ref|NP_395193.1| (NC_003131) putative type III secretion lipoprotein [Yersinia pestis], gi|401692|sp|Q00926|yscJ_YERPE Yop proteins translocation lipoprotein J precursor (YlpB lipoprotein) (Low calcium response locus protein KA) gi|11279457| pir||T43566 translocation lipoprotein J - Yersinia pestis plasmid pCD1, gi|155466|gb|AAA27651.1| (M83986) lcrKa [Yersinia pseudotuberculosis] gi|2996284|gb|AAC62607.1| (AF053946) Yop proteins translocation lipoprotein J [Yersinia pestis] gi|3822055|gb|AAC69775.1| (AF074612) type III secretion protein [Yersinia pestis], gi|5832479|emb|CAB54936.1| (AL11718 9) putative type III secretion lipoprotein [Yersinia pestis]. ;. Contains Flagellar FliF M-ring protein (Interpro|IPR000067, Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor (GO:0003774), Cellular Component: flagellar basal body, MS ring (sensu Bacteria) (GO:0009431)). Contains Type III secretion syste | genbank | 45478525 | NP_995352.1 | 244 | 17654 | 18388 |
| 94048 | yscI | hypothetical | pCD25 | putative type III secretion protein YscI Best Blastp hit =gi|16082746|ref|NP_395192.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|401691|sp|Q00933|yscI_YERPE Yop proteins translocation protein I (Low calcium response locus protein O) gi|11280509|pir||T43567 type III secretion protein yscI - Yersinia pestis plasmid pCD1, gi|155465|gb|AAA27650.1| (M83986) lcrO [Yersinia pseudotuberculosis], gi|2996285|g b|AAC62608.1| (AF053946) Yop proteins translocation protein I homolog [Yersinia pestis] gi|3822056|gb|AAC69776.1| (AF074612) type III secretion protein [Yersinia pestis], gi|5832 478|emb|CAB54935.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478526 | NP_995353.1 | 115 | 18395 | 18742 |
| 94049 | yscH | hypothetical | pCD26 | putative type III secretion protein YscH Best Blastp hit =gi|16082745|ref|NP_395191.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|401690|sp|Q00929|yscH_YERPE Yop proteins translocation protein H (Low calcium response locus protein P) gi|11282515|pir||T43568 translocation protein H homolog - Yersinia pestis plasmid pCD1, gi|155464|gb|AAA27649. 1| (M83986) lcrP [Yersinia pseudotuberculosis], gi|2996224|g b|AAC62547.1| (AF053946) Yop proteins translocation protein H homolog [Yersinia pestis] gi|3822108|gb|AAC69828.1| (AF074612) secreted protein [Yersinia pestis], gi|5832477|emb|CA B54934.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478527 | NP_995354.1 | 165 | 18743 | 19240 |
| 94050 | yscG | hypothetical | pCD27 | putative type III secretion protein YscG Best Blastp hit =gi|16082744|ref|NP_395190.1| (NC_003131) putative type III secretion protei n [Yersinia pestis] gi|11282514|pir||T43569 translocation protein G homolog - Yersinia pestis plasmid pCD1, gi|2996225|gb|AAC62548.1| (AF053946) Yop proteins translocation protein G homolog [Yersinia pestis], gi|3822057|gb|AAC69777.1| (AF 074612) type III secretion protein [Yersinia pestis], gi|583 2476|emb|CAB54933.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478528 | NP_995355.1 | 115 | 19237 | 19584 |
| 94051 | yscF | hypothetical | pCD28 | putative type III secretion protein YscF Best Blastp hit =gi|16082743|ref|NP_395189.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11354331|pir||T43570 type III secret ion protein yscF - Yersinia pestis plasmid pCD1, gi|2996226| gb|AAC62549.1| (AF053946) Yop proteins translocation protein F homolog [Yersinia pestis], gi|3822058|gb|AAC69778.1| (AF074612) type III secretion protein [Yersinia pestis], gi|583 2475|emb|CAB54932.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478529 | NP_995356.1 | 87 | 19586 | 19849 |
| 94052 | yscE | hypothetical | pCD29 | putative type III secretion protein YscE Best Blastp hit =gi|16082742|ref|NP_395188.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11354330|pir||T43571 type III secretion protein yscE - Yersinia pestis plasmid pCD1, gi|2996227| gb|AAC62550.1| (AF053946) Yop proteins translocation protein E homolog [Yersinia pestis], gi|3822059|gb|AAC69779.1| (AF 074612) type III secretion protein [Yersinia pestis], gi|583 2474|emb|CAB54931.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478530 | NP_995357.1 | 66 | 19850 | 20050 |
| 94053 | yscD | hypothetical | pCD30 | putative type III secretion protein YscD Best Blastp hit =gi|16082741|ref|NP_395187.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11282513|pir||T43572 type III secret ion protein yscD - Yersinia pestis plasmid pCD1, gi|155447|g b|AAA27639.1| (M83225) ORF [Yersinia pestis], gi|2996228|gb| AAC62551.1| (AF053946) Yop proteins translocation protein D homolog [Yersinia pestis], gi|3822060|gb|AAC69780.1| (AF074 612) type III secretion protein [Yersinia pestis] gi|5832473|emb|CAB54930.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478531 | NP_995358.1 | 419 | 20047 | 21306 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 94054 | yscC | hypothetical | pCD31 | putative type III secretion protein YscC Best Blastp hit =gi|16082740|ref| NP_395186.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|11354329|pir||T43573 type III secret ion protein yscC - Yersinia pestis plasmid pCD1, gi|155446|g b|AAA27638.1| (M83225) KIM5 [Yersinia pestis] gi|2996229|gb |AAC62552.1| (AF053946) Yop proteins translocation protein C homolog [Yersinia pestis] gi|3822061|gb|AAC69781.1| (AF07 4612) type III secretion protein [Yersinia pestis] gi|58324 72|emb|CAB54929.1| (AL117189) putative type III secretion protein [Yersinia pestis];. Contains Bacterial general secretion pathway protein D (Interpro|IPR001775, Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020)). Contains Type III secretion system outer membrane G protein (Interpro|IPR003522, Biological Process: protein secretion (GO:0009306), Molecular Function: type III protein (virulence-related) secretor (GO:0015448)). Contains Bacterial type II secretion system pro | genbank | 45478532 | NP_995359.1 | 607 | 21303 | 23126 |
| 94055 | yscB | hypothetical | pCD32 | hypothetical protein Best Blastp hit =gi|16082739|ref|NP_395185.1| (NC_003131) hypothetical protein YPCD1.51 [Yersinia pestis], gi|11282512|pir||T43574 translocation protein B homolog - Yersinia pestis plasmid pCD1 gi|155445|gb|AAA27637.1| (M83225) ORF; putative [Yersinia pestis], gi|2996230 |gb|AAC62553.1| (AF053946) Yop proteins translocation protein B homolog [Yersinia pestis] gi|3822109|gb|AAC69829.1| (AF074612) unknown [Yersinia pestis], gi|5832471|emb|CAB54928.1| (AL117189) hypothetical protein YPCD1.51 [Yersinia pestis] | genbank | 45478533 | NP_995360.1 | 137 | 23132 | 23545 |
| 94056 | yscA | hypothetical | pCD33 | hypothetical protein YscA hypothetical protein yscA, len: 32 aa; similar to corresponding CDS from Y. pestis CO92 plasmid pCD1(AL117189) and KIM5 pCD1 (EMBL:AF053946, AF074612) (32 aa). Highly similar to YSCA_YEREN (EMBL:M74011), yscA, from Yersinia enterocolitica plasmid pYV (32 aa). | genbank | 45478534 | NP_995361.1 | 32 | 23771 | 23869 |
| 94057 | virF | hypothetical | pCD34 | putative thermoregulatory protein VirF Best Blastp hit =gi|16082737|ref|NP_395183.1| (NC_003131) putative thermoregulatory protein (271 aa)[Yersinia pestis], gi|126024|sp|P28808|LCRF_YERPE Thermoregulatory protein lcrF, gi|476818|pir||A42884 transcription factor lcrF - Yersinia pestis plasmid pCD1, gi|150564|gb|AAA255 58.1| (M86690) thermoregulatory protein [Plasmid pCD1] gi|2996231|gb|AAC62554.1| (AF053946) thermoregulatory transcription factor LcrF [Yersinia pestis] gi|3822062|gb|AAC69782.1 | (AF074612) LCR activator [Yersinia pestis], gi|5832469|emb |CAB54926.1| (AL117189) putative thermoregulatory protein [ Yersinia pestis] ;. Contains Helix-turn-helix, AraC type (Interpro|IPR000005, Molecular Function: transcription factor (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | genbank | 45478535 | NP_995362.1 | 271 | 23948 | 24763 |
| 94058 | virG | hypothetical | pCD35 | putative Yop targeting lipoprotein VirG Best Blastp hit =gi|16082736|ref|NP_395182.1| (NC_003131) putative Yop targeting lipoprotein [Yersinia pestis] gi|11280621|pir||T43577 yscC lipoprotein chaperone yscW - Yersinia pestis plasmid pCD1, gi|2996232|g b|AAC62555.1| (AF053946) pre-lipoprotein VirG homolog [Yersinia pestis] gi|3822063|gb|AAC69783.1| (AF074612) YscC lipoprotein chaperone [Yersinia pestis], gi|5832468|emb|CAB54925.1| (AL117189) putative Yop targeting lipoprotein [Yersinia pestis] | genbank | 45478536 | NP_995363.1 | 131 | 24887 | 25282 |
| 94059 | yscU | hypothetical | pCD36 | putative type III secretion protein YscU Best Blastp hit =gi|16082735|ref|NP_395181.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|732269|sp|P40300|yscU_YERPE Yop proteins translocation protein U, gi|11279821|pir||T43578 type III secretion protein yscU - Yersinia pestis plasmid pCD1 gi|475126|gb|AAA27681.1| (L25667) yscU [Yersinia pseudotuberculosis], gi|2996233|gb|AAC62556.1| (AF053946) Yop proteins translocation protein U homolog [Yersinia pestis], gi|3822064|gb|AAC69784.1| (AF074612) type III secretion protein [Yersinia pestis] gi|5832467|emb|CAB54924.1| (AL117189) putative type III secretion protein [Yersinia pestis] ;. Contains Type III secretion exporter (Interpro|IPR006135, Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020)). Contains Type III secretion protein HrpY/HrcU (Interpro|IPR006307) | genbank | 45478537 | NP_995364.1 | 354 | 25858 | 26922 |
| 94060 | yscT | hypothetical | pCD37 | putative type III secretion protein YscT Best Blastp hit =gi|16082734|ref|NP_395180.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|732268|sp|P40299|yscT_YERPE Yop proteins translocation protein T, gi|11282511|pir||T43579 type III secretion protein yscT - Yersinia pestis plasmid pCD1, gi |475125|gb|AAA27680.1| (L25667) yscT [Yersinia pseudotuberculosis], gi|2996235|gb|AAC62558.1| (AF053946) Yop proteins translocation protein T homolog [Yersinia pestis], gi|3822065|gb|AAC69785.1| (AF074612) type III secretion protein [Yersinia pestis] gi|5832466|emb|CAB54923.1| (AL117189) putative type III secretion protein [Yersinia pestis] ;. Contains Bacterial export protein, family 1 (Interpro|IPR002010, Biological Process: protein targeting (GO:0006605), Cellular Component: membrane (GO:0016020)). Contains Type III secretion protein SpaR/YscT (Interpro|IPR006304) | genbank | 45478538 | NP_995365.1 | 261 | 26922 | 27707 |
| 94061 | yscS | hypothetical | pCD38 | type III secretion protein yscS YscS Best Blastp hit =gi|10955565|ref|NP_052406.1| (NC_002120) YscS [Yersinia enterocolitica], gi|16082733|ref|NP_395179.1| (NC_003131) putative type III secretion protein [Yersinia pestis], gi|732267|sp|P40298|yscS_Y ERPE Yop proteins translocation protein S, gi|11278554|pir||T43580 type III secretion protein yscS - Yersinia pestis plasmid pCD1 gi|475124|gb|AAA27679.1| (L25667) yscS [Yersinia pseudotuberculosis], gi|2996236|gb|AAC62559.1| (AF053946) Yop proteins translocation protein S homolog [Yersinia pestis], gi|3822066|gb|AAC69786.1| (AF074612) type III secretion protein [Yersinia pestis] gi|4324352|gb|AAD16829.1| (AF1029 90) YscS [Yersinia enterocolitica], gi|5832465|emb|CAB54922.1| (AL117189) putative type III secretion protein [Yersinia pestis] gi|14579351|gb|AAK69228.1|AF336309_23 (AF336309) YscS [Yersinia enterocolitica], gi|23630558|gb|AAN37514.1| (AY150843) YscS [Yersinia enterocolitica] ;. Contains Bacterial export protein FliQ, family 3 (Interpro|IPR00219 | genbank | 45478539 | NP_995366.1 | 88 | 27704 | 27970 |
| 94062 | yscR | hypothetical | pCD39 | putative Yop secretion membrane protein YscR Best Blastp hit =gi|16082732|ref|NP_395178.1| (NC_003131) putative Yop secretion membrane protein [Yersinia pestis], gi|732266|sp|P40297|yscR_YERPE Yop proteins translocation protein R, gi|1073736|pir||B36955 low Ca2+ response stimulon regulation/secretion protein yscR - Yersinia pestis plasmid pCD1 gi|475123|gb|AAA27678.1| (L25 667) yscR [Yersinia pseudotuberculosis], gi|2465659|gb|AAB72 201.1| (AF020214) YscR [Yersinia pestis], gi|2996237|gb|AAC6 2560.1| (AF053946) Yop proteins translocation protein R homolog [Yersinia pestis], gi|3822067|gb|AAC69787.1| (AF074612) type III secretion protein [Yersinia pestis] gi|5832464|emb|CAB54921.1| (AL117189) putative Yop secretion membrane protein [Yersinia pestis] ;. Contains Yop virulence translocation protein R (Interpro|IPR005773, Biological Process: protein transport (GO:0015031), Molecular Function: type III protein (virulence-related) secretor (GO:0015448), Cellular Component: integral membrane protein (GO:00 | genbank | 45478540 | NP_995367.1 | 217 | 27972 | 28625 |
| 94063 | yscQ | hypothetical | pCD40 | putative type III secretion protein YscQ Best Blastp hit =gi|16082731|ref|NP_395177.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|1176912|sp|P42713|yscQ_YERPE Yop proteins translocation protein Q, gi|1073737|pir||A36955 transl ocation protein Q - Yersinia pestis plasmid pCD1, gi|2465658 |gb|AAB72200.1| (AF020214) YscQ [Yersinia pestis] gi|2996238|gb|AAC62561.1| (AF053946) Yop proteins translocation protein Q [Yersinia pestis] gi|3822068|gb|AAC69788.1| (AF074612) type III secretion protein [Yersinia pestis], gi|5832463|emb|CAB54920.1| (AL117189) putative type III secretion protein [Yersinia pestis] ;. Contains Flagellar motor switch FliN protein (Interpro|IPR001172, Biological Process: ciliary/flagellar motility (GO:0001539), Molecular Function: motor (GO:0003774), Biological Process: chemotaxis (GO:0006935), Cellular Component: flagellar basal body (sensu Bacteria) (GO:0009425)). Contains Surface presentation of antigens (SPOA) protein (Interpro|IPR001543). Contains Type II | genbank | 45478541 | NP_995368.1 | 307 | 28622 | 29545 |
| 94064 | yscP | hypothetical | pCD41 | putative type III secretion protein YscP Best Blastp hit =gi|16082730|ref|NP_395176.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|732264|sp|P40295|yscP_YERPE Yop proteins translocation protein P, gi|11280759|pir||T43583 type III secretion protein yscP - Yersinia pestis plasmid pCD1, gi |475121|gb|AAA27676.1| (L25667) yscP [Yersinia pseudotuberculosis], gi|2465657|gb|AAB72199.1| (AF020214) YscP [Yersinia pestis], gi|2996239|gb|AAC62562.1| (AF053946) Yop proteins translocation protein P [Yersinia pestis], gi|3822069|gb|AAC69789.1| (AF074612) type III secretion protein [Yersinia pestis] gi|5832462|emb|CAB54919.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478542 | NP_995369.1 | 455 | 29542 | 30909 |
| 94065 | yscO | hypothetical | pCD42 | putative type III secretion protein YscO Best Blastp hit =gi|16082729|ref|NP_395175.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|11354333|pir||T43584 type III secretion protein yscO - Yersinia pestis plasmid pCD1, gi|2465656|gb|AAB72198.1| (AF020214) YscO [Yersinia pestis], gi|2996240 |gb|AAC62563.1| (AF053946) Yop proteins translocation protein O [Yersinia pestis], gi|3822070|gb|AAC69790.1| (AF074612) type III secretion protein [Yersinia pestis] gi|5832461|emb|CAB54918.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478543 | NP_995370.1 | 154 | 30909 | 31373 |
| 94066 | yscN | hypothetical | pCD43 | putative Yops secretion ATP synthase YscN Best Blastp hit =gi|16082728|ref|NP_395174.1| (NC_003131) putative Yops secretion ATP synthase (439 aa) [Yersinia pestis], gi|11266663|pir||T43585 yopS secretion protein - Yersinia pestis plasmid pCD1, gi|2996241|gb|AAC62564.1| (AF053946) Yops secretion ATPase YscN homolog [Yersinia pestis], gi|3822071|gb|AAC69791.1| (AF074612) Yops secretion protein [Yersinia pestis], gi|5832460|emb|CAB54917.1| ( AL117189) putative Yops secretion ATP synthase [Yersinia pestis], gi|14579346|gb|AAK69223.1|AF336309_18 (AF336309) YscN [Yersinia enterocolitica], gi|23630601|gb|AAN37557.1| (AY15 0843) YscN [Yersinia enterocolitica] ;. Contains H+-transporting two-sector ATPase, alpha/beta subunit, central region (Interpro|IPR000194, Molecular Function: hydrogen-transporting two-sector ATPase (GO:0003936), Molecular Function: ATP binding (GO:0005524), Biological Process: hydrogen transport (GO:0006818)). Contains Disease resistance protein (Interpro|IPR000767, Molecular Function: | genbank | 45478544 | NP_995371.1 | 439 | 31370 | 32689 |
| 94067 | yopN | hypothetical | pCD44 | putative membrane-bound Yop targeting protein YopN Best Blastp hit =gi|16082727|ref|NP_395173.1| (NC_003131) putative membrane-bound Yop targeting protein (293 aa) [Yersinia pestis], gi|126023|sp|P16160|yopN_YERP E Outer membrane protein yopN (Yop4b) (LcrE), gi|97012|pir|| S15320 yopN protein - Yersinia pseudotuberculosis virulence plasmid, gi|11281981|pir||T43586 secretion control protein yopN - Yersinia pestis plasmid pCD1 gi|48634|emb|CAA36129.1 | (X51833) LcrE product (AA 1-293) [Yersinia pseudotuberculosis], gi|2996242|gb|AAC62565.1| (AF053946) outer membrane protein YopN (LcrE) homolog [Yersinia pestis], gi|3822072|gb|AAC69792.1| (AF074612) secretion control protein [Yersinia pestis] gi|5832459|emb|CAB54916.1| (AL117189) putative membrane-bound Yop targeting protein [Yersinia pestis] | genbank | 45478545 | NP_995372.1 | 293 | 32887 | 33768 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 94068 | tyeA | hypothetical | pCD45 | Yop secretion and targeting control protein TyeA Best Blastp hit =gi|23630563|gb|AAN 37519.1| (AY150843) TyeA [Yersinia enterocolitica] | genbank | 45478546 | NP_995373.1 | 92 | 33749 | 34027 |
| 94069 | sycN | hypothetical | pCD46 | putative type III secretion protein SycN Best Blastp hit =gi|16082725|ref|NP_395171.1| (NC_003131) putative type III secretion protein (123 aa) [Yersinia pestis]gi|140990|sp|P16162|Y6D7_YERPE Hypothet ical protein YPCD1.37c, gi|79201|pir||S15322 hypothetical protein 2 - Yersinia pseudotuberculosis plasmid gi|11281980|pir||T43588 hypothetical protein Y0044 - Yersinia pestis plasmid pCD1, gi|581840|emb|CAA36131.1| (X51833) ORF 2 (AA 1-12 3) [Yersinia pseudotuberculosis] gi|2996244|gb|AAC62567.1| (AF053946) unknown [Yersinia pestis], gi|3822074|gb|AAC69794.1| (AF074612) unknown [Yersinia pestis], gi|5832457|emb|CAB 54914.1| (AL117189) putative type III secretion protein [Yersinia pestis] | genbank | 45478547 | NP_995374.1 | 123 | 34014 | 34385 |
| 94070 | yscX | hypothetical | pCD47 | putative type III secretion protein YscX Best Blastp hit =gi|16082724|ref|NP_395170.1| (NC_003131) putative type III secretion protein (122 aa) [Yersinia pestis], gi|11282510|pir||T43589 hypothetical protein Y0045 - Yersinia pestis plasmid pCD1, gi|2996246|gb|AAC62569.1| (AF053946) unknown [Yersinia pestis] gi|3822075|gb|AAC69795.1| (AF074612) unknown [Yersinia pestis], gi|58324 56|emb|CAB54913.1| (AL117189) putative type III secretion protein [Yersinia pestis] gi|14579341|gb|AAK69218.1|AF336309 _13 (AF336309) YscX [Yersinia enterocolitica], gi|23630565|g b|AAN37521.1| (AY150843) YscX [Yersinia enterocolitica] | genbank | 45478548 | NP_995375.1 | 122 | 34382 | 34750 |
| 94071 | yscY | hypothetical | pCD48 | putative type III secretion protein YscY Best Blastp hit =gi|10955555|ref|NP_052396.1| (NC_002120) YscY (114 aa) [Yersinia enterocolitica] gi|16082723|ref|NP_395169.1| (NC_003131) putative type III secretion protein [Yersinia pestis] gi|140992|sp|P21209|Y6D5_Y ERPE Hypothetical protein YPCD1.35c, gi|96962|pir||E35392 hypothetical protein 4 - Yersinia enterocolitica, gi|11282509|pir||T43590 hypothetical protein Y0046 - Yersinia pestis plasmid pCD1 gi|1197038|gb|AAA98432.1| (M32097) unknown protein [Plasmid pYV03], gi|2996247|gb|AAC62570.1| (AF053946) unknown [Yersinia pestis], gi|3822076|gb|AAC69796.1| (AF074612) unknown [Yersinia pestis] gi|4324342|gb|AAD16819.1| (AF102 990) YscY [Yersinia enterocolitica], gi|5832455|emb|CAB54912 .1| (AL117189) putative type III secretion protein [Yersinia pestis] gi|23630574|gb|AAN37530.1| (AY150843) YscY [Yersi nia enterocolitica] | genbank | 45478549 | NP_995376.1 | 114 | 34747 | 35091 |
| 94072 | yscV | hypothetical | pCD49 | putative membrane-bound Yop protein YscV Best Blastp hit =gi|16082722|ref|NP_395168.1| (NC_003131) putative membrane-bound Yop protein (704 aa) [Yersinia pestis], gi|17380420|sp|P31487|LCRD_YERPE Low calcium response locus protein D, gi|11279044|pir||T43591 low calcium response protein D - Yersinia pestis plasmid pCD1 gi|155461|gb|AAA27647.1| (M96850) lcrD [Yersinia pseudotuberculosis], gi|2996248|gb|AAC62571.1| (AF053946) low calcium response locus protein D [Yersinia pestis] gi|3822077|gb|AAC 69797.1| (AF074612) secretion protein [Yersinia pestis], gi|5832454|emb|CAB54911.1| (AL117189) putative membrane-bound Yop protein [Yersinia pestis] | genbank | 45478550 | NP_995377.1 | 704 | 35078 | 37192 |
| 94073 | lcrR | hypothetical | pCD50 | hypothetical protein LcrR Best Blastp hit =gi|16082721|ref|NP_395167.1| (NC_003131) hypothetical protein lcrR [Yersini a pestis] gi|17379189|sp|P19393|LCRR_YERPE Low calcium response locus protein R, gi|11282508|pir||T43592 low calcium response protein R - Yersinia pestis plasmid pCD1 gi|155462|gb|AAA27648.1| (M96850) lcrR [Yersinia pseudotuberculosis], gi|2996249|gb|AAC62572.1| (AF053946) low calcium response locus protein R [Yersinia pestis] gi|3822111|gb|AAC69831.1| ( AF074612) unknown [Yersinia pestis], gi|5832453|emb|CAB54910 .1| (AL117189) hypothetical protein lcrR [Yersinia pestis] | genbank | 45478551 | NP_995378.1 | 146 | 37189 | 37629 |
| 94074 | lcrG | hypothetical | pCD51 | probable Yop regulator LcrG Best Blastp hit =gi|16082720|ref|NP_395166.1| (NC_003131) putative Yop regulator (95 aa) [Yersinia pestis] gi|126025|sp|P19394|LCRG_YERPE Low calcium response locus protein G, gi|96996|pir||A33601 low calcium response protein G - Yersinia pestis plasmid pCD1 gi|280146|pir||A37314 regulatory protein LcrG - Yersinia pseudotuberculosis, gi|155449|gb|AAA27640.1| (M26405) lcrG [Yersinia pestis], gi|1 55457|gb|AAA27644.1| (M57893) V-antigen [Yersinia pseudotuberculosis] gi|2996250|gb|AAC62573.1| (AF053946) low calcium response locus protein G [Yersinia pestis] gi|3822078|gb|AAC69798.1| (AF074612) V-antigen [Yersinia pestis], gi|583245 2|emb|CAB54909.1| (AL117189) putative Yop regulator [Yersinia pestis] | genbank | 45478552 | NP_995379.1 | 95 | 37671 | 37958 |
| 94075 | lcrV | hypothetical | pCD52 | V antigen LcrV Best Blastp hit = gi|7578513|gb|AAF64076.1|AF167309_1 (AF167309) V antigen [Yersinia pestis] ;. Contains Low calcium response V antigen (Interpro|IPR005413, Cellular Component: extracellular (GO:0005576), Biological Process: pathogenesis (GO:0009405)) | genbank | 45478553 | NP_995380.1 | 324 | 37960 | 38934 |
| 94076 | sycD | hypothetical | pCD53 | putative yopB/yopD chaperone SycD Best Blastp hit =gi|16082718|ref|NP_395164.1| (NC_003131) putative yopB/yopD chaperone [Yersinia pestis] gi|126026|sp|P21207|LCRH_YERPE Low calcium response locus protein H, gi|96997|pir||C33601 low calcium response protein H - Yersinia pestis plasmid pCD1, gi|155451|gb| AAA27642.1| (M26405) lcrH [Yersinia pestis] gi|2996252|gb|AAC62575.1| (AF053946) low calcium response locus protein H [Yersinia pestis] gi|3822080|gb|AAC69800.1| (AF074612) YopB/D chaperone [Yersinia pestis], gi|5832450|emb|CAB54907.1| (A L117189) putative yopB/yopD chaperone [Yersinia pestis] ;. Contains TPR repeat (Interpro|IPR001440). Contains Gram-negative bacterial type III secretion SycD chaperone (Interpro|IPR005415, Biological Process: response to stress (GO:0006950)) | genbank | 45478554 | NP_995381.1 | 168 | 38937 | 39443 |
| 94077 | yopB | hypothetical | pCD54 | putative Yop targeting protein YopB Best Blastp hit =gi|16082717|ref|NP_395163.1| (NC_003131) putative Yop targeting protein (401 aa) [Yersinia pestis] gi|11354337|pir||T43596 yop targeting protein - Yersinia pestis plasmid pCD1, gi|2996253|gb|AAC62576.1| (AF053946) YopB homolog [Yersinia pestis], gi|3822081|gb|AAC 69801.1| (AF074612) Yop targeting protein [Yersinia pestis] gi|5832449|emb|CAB54906.1| (AL117189) putative Yop targeting protein [Yersinia pestis] ;. Contains Secretion system effector C (SseC) like protein (Interpro|IPR006972) | genbank | 45478555 | NP_995382.1 | 401 | 39421 | 40626 |
| 94078 | yopD | hypothetical | pCD55 | putative Yop negative regulation/targeting component YopD Best Blastp hit = gi|16082716|ref|NP_395162.1| (NC_003131) putative Yop negative regulation/targeting component [Yersinia pestis] gi|11284339|pir||T43597 yop targeting negative regulator - Yersinia pestis plasmid pCD1, gi|2996254|gb|AAC62577.1| (AF053946) YopD homolog [Yersinia pestis] gi|3822082|gb|AAC69802.1| (AF074612) Yop targeting negative regulator [Yersinia pestis] gi|5832448|emb|CAB54905.1| (AL117189) putative Yop negative regulation/targeting component [Yersinia pestis] | genbank | 45478556 | NP_995383.1 | 306 | 40645 | 41565 |
| 94079 | hypothetical | pCD57 | hypothetical protein Best Blastp hit = pir||T42894 hypothetical protein Y0056 (107 aa) - Yersinia pestis plasmid pCD1, gb|AAC69804.1| (AF074612) unknown [Yersinia pestis] | genbank | 45478557 | NP_995384.1 | 107 | 42199 | 42522 | |
| 94080 | hypothetical | pCD59 | hypothetical protein Best Blastp hit = pir||T42895 hypothetical protein Y0058 - Yersinia pestis plasmid pCD1 pir||T42895 hypothetical protein Y0058 - Yersinia pestis plasmid pCD1 len: 69 aa | genbank | 45478558 | NP_995385.1 | 69 | 42691 | 42900 | |
| 94081 | yopM | hypothetical | pCD60 | putative targeted effector protein YopM Best Blastp hit =gi|16082715|ref|NP_395161.1| (NC_003131) putative targeted effector protein [Yersinia pestis], gi|17380529|sp|P17778|yopM_YERPE Outer membrane protein yopM, gi|11354335|pir||T43599 yop targeted effector protein - Yersinia pestis plasmid pCD1, gi|2996257|gb|AAC62580.1| (AF053946) outer membrane protein YopM [Yersinia pestis], gi|3822086|gb|AAC69806.1| (AF074612) Yop targeted effector protein [Yersinia pestis], gi|5832447|emb|CAB54903.1| (AL117189) putative targeted effector protein [Yersinia pestis], 409 aa, with a 43 aa deletion, which is leucine rich region(LRR); highly similar to, gi|97006|pir|A33950,YopM protein-Yersinia pestis; highly similar to, gi|16975343|pdb|1JL5|A (Yersinia pestis YopM,454 aa) with 2 LRR deletions (43 aa and 35 aa). Contains Leucine-rich repeat (Interpro|IPR001611). Contains Leucine-rich repeat, bacterial type (Interpro|IPR007088) | genbank | 45478559 | NP_995386.1 | 367 | 43294 | 44397 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 94082 | hypothetical | pCD62 | hypothetical protein Best Blastp hit =pir||T42897 hypothetical protein Y0061 (39 aa) - Yersinia pestis plasmid pCD1 gb|AAC69807.1| (AF074612) unknown [Yersinia pestis] | genbank | 45478560 | NP_995387.1 | 39 | 44639 | 44758 | |
| 94083 | hypothetical | pCD64 | hypothetical protein Best Blastp hit =gi|16082712|ref|NP_395158.1| (NC_003131) hypothetical protein YPCD1.23 (139 aa) [Yersinia pestis] gi|11280834|pir||T42898 hypothetical protein Y0062 - Yersinia pestis plasmid pCD1, gi|3822088|gb|AAC69808.1| (AF074612) unknown [Yersinia pestis], gi|5832444|emb|CAB 54900.1| (AL117189) hypothetical protein YPCD1.23 [Yersinia pestis] | genbank | 45478561 | NP_995388.1 | 139 | 45633 | 46052 | |
| 94084 | hypothetical | pCD65 | hypothetical protein Best Blastp hit =gi|16082711|ref|NP_395157.1| (NC_003131) hypothetical protein YPCD1.22c (129 aa) [Yersinia pestis] gi|11354279|pir||T42899 hypothetical protein Y0063 - Yersinia pestis plasmid pCD1, gi|3822089|gb|AAC69809.1| (AF074612) unknown [Yersinia pestis] gi|5832443|emb|CAB54899.1| (AL117189) hypothetical protein YPCD1.22c [Yersinia pestis] | genbank | 45478562 | NP_995389.1 | 129 | 46324 | 46713 | |
| 94085 | sycT | hypothetical | pCD66 | putative yopT chaperone SycT Best Blastp hit =gi|16082710|ref|NP_395156.1| (NC_003131) putative yopT chaperone (132 aa) [Yersinia pestis] gi|11354338|pir||T42900 YopT chaperone - Yersinia pestis plasmid pCD1, gi|3822112|gb|AAC69832.1| (AF074612) YopT chaperone [Yersinia pestis], gi|5832442|emb|CAB54898.1| (AL117189) putative yopT chaperone [Yersinia pestis] | genbank | 45478563 | NP_995390.1 | 132 | 46757 | 47155 |
| 94086 | yopT | hypothetical | pCD67 | putative cytotoxic effector protein YopT Best Blastp hit =gi|16082709|ref|NP_395155.1| (NC_003131) putative cytotoxic effector protein (322 aa) [Yersinia pestis], gi|11354336|pir||T43601 yop targeted effector yopT - Yersinia pestis plasmid pCD1, gi|2996259|gb|AA C62582.1| (AF053946) unknown [Yersinia pestis] gi|3822113|gb|AAC69833.1| (AF074612) Yop targeted effector [Yersinia pestis], gi|5832441|emb|CAB54897.1| (AL117189) putative cytotoxic effector protein [Yersinia pestis] ;. Contains Yersinia/Haemophilus virulence surface antigen (Interpro|IPR003951). Contains Cysteine protease domain, YopT-type (Interpro|IPR006473) | genbank | 45478564 | NP_995391.1 | 322 | 47155 | 48123 |
| 94087 | yopQ | hypothetical | pCD68 | putative virulence determinant protein YopQ Best Blastp hit =gi|16082708|ref|NP_395154.1| (NC_003131) putative virulence determinant protein (182 aa) [Yersinia pestis], gi|11280497|pir||T43602 yop targeting protein yopK - Yersinia pestis plasmid pCD1 gi|2996260|gb |AAC62583.1| (AF053946) YopK (YopQ) homolog [Yersinia pestis], gi|3822090|gb|AAC69810.1| (AF074612) Yop targeting prote in [Yersinia pestis] gi|5832440|emb|CAB54896.1| (AL117189) putative virulence determinant protein [Yersinia pestis] ;. Contains Prenyl group binding site (CAAX box) (Interpro|IPR001230) | genbank | 45478565 | NP_995392.1 | 187 | 48608 | 49171 |
| 94088 | hypothetical | pCD71 | hypothetical protein Best Blastp hit = gi|16082706|ref|NP_395152.1| (NC_003131) hypothetical protein YPCD1.16c (107 aa) [Yersinia pestis] gi|11354280|pir||T42903 hypothetical protein Y0068 - Yersinia pestis plasmid pCD1, gi|3822091|gb|AAC6981 1.1| (AF074612) unknown [Yersinia pestis], gi|5832438|emb|CA B54893.1| (AL117189) hypothetical protein YPCD1.16c [Yersinia pestis] ; . Contains Helix-turn-helix, Fis-type (Interpro|IPR002197, Molecular Function: transcription factor (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)). Contains Transposase, IS3/IS911family (Interpro|IPR002514) | genbank | 45478566 | NP_995393.1 | 107 | 50499 | 50822 | |
| 94089 | hypothetical | pCD72 | hypothetical protein Best Blastp hit =gi|16082705|ref|NP_395151.1| (NC_003131) hypothetical protein YPCD1.15c (152 aa) [Yersinia pestis] gi|5832437|emb|CAB54892.1| (AL117189) hypothetical protein YPCD1.15c [Yersinia pestis] | genbank | 45478567 | NP_995394.1 | 152 | 50846 | 51304 | |
| 94090 | sopA | hypothetical | pCD74 | putative plasmid partitioning transcription repressor Best Blastp hit = gi|16082703|ref|NP_395149.1| (NC_003131) putative plasmid partitioning transcription repressor (388 aa) [Yersinia pestis], gi|3822093|gb|AAC69813.1| (AF074612) sopAB transcription repressor [Yersinia pes tis] gi|5832435|emb|CAB54890.1| (AL117189) putative plasmid partitioning transcription repressor [Yersinia pestis] ;. Contains Bacterial regulatory protein, MerR family (Interpro|IPR000551, Molecular Function: transcription factor (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)). Contains ATPase, ParA type (Interpro|IPR000707) | genbank | 45478568 | NP_995395.1 | 372 | 52458 | 53576 |
| 94091 | sopB | hypothetical | pCD75 | putative plasmid partitioning control protein Best Blastp hit =gi|16082702|ref|NP_395148.1| (NC_003131) putative plasmid partitioning control protein (320 aa) [Yersinia pestis], gi|11278138|pir||T42906 plasmid partitioning control protein - Yersinia pestis plasmid pCD1, gi|3822094|gb|AAC69814.1| (AF074612) plasmid partitioning control protein [Yersinia pestis] gi|5832434|emb|CAB54889.1| (AL117189) putative plasmid partitioning control protein [Yersinia pestis] ;. Contains ParB-like nuclease (Interpro|IPR003115, Molecular Function: DNA binding (GO:0003677), Cellular Component: extrachromosomal circular DNA (GO:0005727)). Contains ParB-like partition protein (Interpro|IPR004437, Molecular Function: DNA binding (GO:0003677), Biological Process: plasmid partitioning (sensu Bacteria) (GO:0030542)) | genbank | 45478569 | NP_995396.1 | 325 | 53561 | 54538 |
| 94092 | hypothetical | pCD76 | hypothetical protein No significant database match found. | genbank | 45478570 | NP_995397.1 | 82 | 54686 | 54934 | |
| 94093 | hypothetical | pCD78 | hypothetical protein Best Blastp hit = gi|16082700|ref|NP_395146.1| (NC_003131) hypothetical protein YPCD1.09c [Yersinia pestis] gi|11354282|pir||T42907 hypothetical protein Y0074 - Yersinia pestis plasmid pCD1, gi|3822095|gb|AAC69815.1| (AF074612) unknown [Yersinia pestis] gi|5832432|emb|CAB54886.1| (AL117189) hypothetical protein YPCD1.09c [Yersinia pestis] ;. Contains Protein of unknown function UPF0156 (Interpro|IPR005360, Molecular Function: molecular_function unknown (GO:0005554)) | genbank | 45478571 | NP_995398.1 | 91 | 55767 | 56042 | |
| 94094 | hypothetical | pCD79 | putative plasmid stabilization element ParE Best Blastp hit = gi|16082699|ref|NP_395145.1| (NC_003131) hypothetical protein YPCD1.08c (99 aa) [Yersinia pestis] gi|11354283|pir||T42908 hypothetical protein Y0075 - Yersinia pestis plasmid pCD1, gi|3822096|gb|AAC69816.1| (AF074612) unknown [Yersinia pestis] gi|5832431|emb|CAB54885.1| (AL117189) hypothetical protein YPCD1.08c [Yersinia pestis] ; also simialr to gi|27365828|ref|NP_761356.1| Plasmid stabilization element ParE [Vibrio vulnificus CMCP6}. | genbank | 45478572 | NP_995399.1 | 99 | 56035 | 56334 | |
| 94095 | hypothetical | pCD80 | hypothetical protein Best Blastp hit = gi|16082698|ref|NP_395144.1| (NC_003131) hypothetical protein YPCD1.07 [Yersinia pestis] gi|11354284|pir||T42909 hypothetical protein Y0076 - Yersinia pestis plasmid pCD1, gi|3822097|gb|AAC69817.1| (AF074612) unknown [Yersinia pestis] gi|5832430|emb|CAB54884.1| (AL117189) hypothetical protein YPCD1.07 [Yersinia pestis] | genbank | 45478573 | NP_995400.1 | 98 | 56176 | 56472 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 94096 | yopE | hypothetical | pCD81 | putative outer membrane virulence protein YopE Best Blastp hit =gi|16082697|ref|NP_395143.1| (NC_003131) putative outer membrane virulence protein (219 aa) [Yersinia pestis], gi|401663|sp|P31493|yopE_YERPE Outer membrane virulence protein yopE, gi|11281979|pir||T43605 targeted effector yopE - Yersinia pestis plasmid pCD1 gi|155543|gb|AAA27672.1| (M34279) virulence determinant (yopE) [Yersinia pestis], gi|2996264|gb|AAC62587.1| (AF053946) YopE [Yersinia pestis] gi|3822098|gb|AAC69818.1| (AF074612) targeted effector [Yersinia pestis], gi|5832429|emb|CAB54883.1| (AL117189) putative outer membrane virulence protein [Yersinia pestis] ;. Contains Yersinia virulence determinant YopE (Interpro|IPR003537, Molecular Function: GTPase activator (GO:0005096), Cellular Component: membrane (GO:0016020)) | genbank | 45478574 | NP_995401.1 | 219 | 56474 | 57133 |
| 94097 | sycE | hypothetical | pCD82 | putative yopE chaperone SycE Best Blastp hit =gi|16082696|ref|NP_395142.1| (NC_003131) putative yopE chaperone (130 aa) [Yersinia pestis] gi|401546|sp|P31491|YERA_YERPE YopE regulator gi|11280760|pir||T43606 yopE chaperone sycE - Yersinia pestis plasmid pCD1, gi|455388|gb|AAA27671.1| (M34279) yopE regulator (yerA) [Yersinia pestis] gi|2996265|gb|AAC62588.1| (AF0539 46) YopE chaperone SycE [Yersinia pestis], gi|3822099|gb|AAC69819.1| (AF074612) YopE chaperone [Yersinia pestis], gi|583 2428|emb|CAB54882.1| (AL117189) putative yopE chaperone [Yersinia pestis] ;. Contains Gram-negative bacterial type III secretion SycE chaperone (Interpro|IPR005416) | genbank | 45478575 | NP_995402.1 | 130 | 57327 | 57719 |
| 94098 | hypothetical | pCD83 | IS1222-like transposase Best Blastp hit =gi|16082695|ref|NP_395141.1| (NC_003131) YPCD1.04, possible transposase remnant, len: 215 aa; similar to many e.g. TR:Q46612 (EMBL:X78 052) Enterobacter agglomerans IS1222 ORFB (276 aa). Truncated at N-terminus [Yersinia pestis], gi|5832427|emb|CAB54881 .1| (AL117189) YPCD1.04, possible transposase remnant, len: 215 aa; similar to many e.g. TR:Q46612 (EMBL:X78052) Enterobacter agglomerans IS1222 ORFB (276 aa). Truncated at N-terminus [Yersinia pestis] ; and emb|CAB46578.1| (AJ132945) IS1222-like transposase [Yersinia enterocolitica] (165 aa);. Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)) | genbank | 45478576 | NP_995403.1 | 165 | 57782 | 58279 | |
| 94099 | hypothetical | pCD84 | hypothetical protein No significant database found. | genbank | 45478577 | NP_995404.1 | 71 | 58463 | 58678 | |
| 94100 | hypothetical | pCD85 | probable transposase Best Blastp hit = pir||T43607 probable transposase (390 aa) - Yersinia pestis plasmid pCD1 gb|AAC62589.1| (AF053946) putative transposase [Yersinia pestis];. Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)) | genbank | 45478578 | NP_995405.1 | 339 | 58682 | 59701 | |
| 94101 | sycH | hypothetical | pCD87 | putative yopH targeting protein SycH Best Blastp hit =gi|16082778|ref|NP_395224.1| (NC_003131) putative yopH targeting protein (141 aa) [Yersinia pestis] gi|2126212|pir||S70095 sycH protein - Yersinia pseudotuberculosis, gi|11282507|pir||T43609 yopH chaperone sycH - Yersinia pestis plasmid pCD1 gi|604517|gb|AAA99011.1| (U18727) SycH [Yersinia pseudotuberculosis], gi|2996268|gb|AAC62591.1| (AF053946) YopH chaperone SycH protein homolog [Yersinia pestis] gi|3822100|gb|AAC69820.1| (AF074612) YopH chaperone [Yersinia pestis], gi|5832510|emb|CAB54972.1| (AL117189) putative yopH targeting protein [Yersinia pestis] | genbank | 45478579 | NP_995406.1 | 141 | 60476 | 60901 |
| 94102 | hypothetical | pCD88 | putative transposase Best Blastp hit =gi|16082777|ref|NP_395223.1| (NC_003131) putative transposase (269 aa) [Yersinia pestis] gi|5832509|emb|CAB54971.1| (AL117189) putative transposase [Yersinia pestis] ;. Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)). Contains Integrase, catalytic domain (Interpro|IPR001584, Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310)) | genbank | 45478580 | NP_995407.1 | 269 | 61049 | 61858 | |
| 94103 | hypothetical | pCD89 | putative transposase Best Blastp hit = gi|16082776|ref|NP_395222.1| (NC_003131) putative transposase (88 aa) [Yersinia pestis] gi|22124418|ref|NP_667841.1| (NC_004088) putative transposase [Yersinia pestis KIM], gi|11354320|pir||T43610 probable IS1617 transposase - Yersinia pestis plasmid pCD1 gi|2996269|gb|AAC62592.1| (AF053946) putative transposase [Yersinia pestis], gi|3822101|gb|AAC69821.1| (AF074612) putative IS1617 transposase [Yersinia pestis] gi|5832508|emb|CAB54970.1| (AL117189) putative transposase [Yersinia pestis], gi|21957203|gb|AAM84092.1|AE013652_1 (AE013652) putative transposase [Yersinia pestis KIM]; Contains Helix-turn-helix, Fis-type (Interpro|IPR002197, Molecular Function: transcription factor (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)). Contains Transposase, IS3/IS911family (Interpro|IPR002514) | genbank | 45478581 | NP_995408.1 | 88 | 61882 | 62148 | |
| 94104 | hypothetical | pCD90 | hypothetical protein Best Blastp hit =gi|16082775|ref|NP_395221.1| (NC_003131) hypothetical protein YPCD1.92 (109 aa) [Yersinia pestis] gi|11354285|pir||T42914 hypothetical protein Y0085 - Yersinia pestis plasmid pCD1, gi|3822102|gb|AAC69822.1| (AF074612) unknown [Yersinia pestis] gi|5832507|emb|CAB54969.1| (AL117189) hypothetical protein YPCD1.92 [Yersinia pestis] | genbank | 45478582 | NP_995409.1 | 109 | 62248 | 62577 | |
| 94105 | hypothetical | pCD91 | hypothetical protein Best Blastp hit = pir||T42915 hypothetical protein Y0086 - Yersinia pestis plasmid pCD1 pir||T42915 hypothetical protein Y0086 (154 aa)- Yersinia pestis plasmid pCD1 | genbank | 45478583 | NP_995410.1 | 154 | 62716 | 63180 | |
| 94106 | tnpR | hypothetical | pCD92 | putative resolvase Best Blastp hit = gi|16082774|ref|NP_395220.1| (NC_003131) putative resolvase (183 aa) [Yersinia pestis] gi|11277978|pir||T43611 probable resolvase tnpR - Yersinia pestis plasmid pCD1, gi|2996270|gb|AAC62593.1| (AF053946) transposon gamma-delta resolvase (transposon TN1000) homolog [Yersinia pestis], gi|3822104|gb|AAC69824.1| (AF074612) putative resolvase [Yersinia pestis] gi|5832506|emb|CAB54968.1| (AL117189) putative resolvase [Yersinia pestis] ;. Contains Serine proteases, subtilase family (Interpro|IPR000209, Molecular Function: subtilase (GO:0004289), Biological Process: proteolysis and peptidolysis (GO:0006508)). Contains Site-specific recombinase (Interpro|IPR006118, Molecular Function: recombinase (GO:0000150), Biological Process: DNA recombination (GO:0006310)). Contains Resolvase, N-terminal (Interpro|IPR006119, Molecular Function: recombinase (GO:0000150), Biological Process: DNA recombination (GO:0006310)). Contains Resolvase helix-turn-helix domain (Interpro|IPR0 | genbank | 45478584 | NP_995411.1 | 211 | 63199 | 63834 |
| 94107 | tnpA | hypothetical | pCD93 | putative transposase Best Blastp hit =gi|16082773|ref|NP_395219.1| (NC_003131) putative transposase (771 aa) [Yersinia pestis] gi|11354328|pir||T43612 transposase - Yersinia pestis plasmid pCD1, gi|2996271|gb|AAC62594.1| (AF053946) transposase (Tn1000) homolog [Yersinia pestis] gi|5832505|emb|CAB54967.1| (AL117189) putative transposase [Yersinia pestis] ; Contains Transposase Tn3 (Interpro|IPR002513) | genbank | 45478585 | NP_995412.1 | 771 | 63914 | 66229 |
| 94108 | hypothetical | pCD97 | hypothetical protein Best Blastp hit =gi|16082770|ref|NP_395216.1| (NC_003131) hypothetical protein YPCD1.84c (163 aa) [Yersinia pestis] gi|11354318|pir||T42917 probable DNA helicase - Yersinia pestis plasmid pCD1, gi|3822105|gb|AAC69825.1| (AF074612) putative DNA helicase [Yersinia pestis], gi|58325 02|emb|CAB54961.1| (AL117189) hypothetical protein YPCD1.84c [Yersinia pestis] | genbank | 45478586 | NP_995413.1 | 163 | 69146 | 69637 | |
| 94109 | hypothetical | pCD98 | hypothetical protein Best Blastp hit =gi|16082769|ref|NP_395215.1| (NC_003131) hypothetical protein YPCD1.83c [Yersinia pestis] gi|11354286|pir||T42918 hypothetical protein Y0094 - Yersinia pestis plasmid pCD1, gi|3822106|gb|AAC6982 6.1| (AF074612) unknown [Yersinia pestis] gi|5832501|emb|CAB54960.1| (AL117189) hypothetical protein YPCD1.83c [Yersinia pestis] | genbank | 45478587 | NP_995414.1 | 107 | 69803 | 70126 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |