BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu1363
(1212 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Str... 2248 0.0
gi|25010945|ref|NP_735340.1| hypothetical protein gbs0891 [... 1627 0.0
gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcu... 1617 0.0
gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcu... 1614 0.0
gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein... 1607 0.0
gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit... 1400 0.0
gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit... 1399 0.0
gi|21910050|ref|NP_664318.1| putative ATP-dependent exonucl... 1398 0.0
gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit... 1397 0.0
gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit... 1397 0.0
gi|139474037|ref|YP_001128753.1| putative ATP-dependent exo... 1396 0.0
gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit... 1395 0.0
gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit... 1393 0.0
gi|19745861|ref|NP_606997.1| putative ATP-dependent exonucl... 1392 0.0
gi|15674822|ref|NP_268996.1| putative ATP-dependent exonucl... 1391 0.0
gi|28896252|ref|NP_802602.1| putative ATP-dependent exonucl... 1330 0.0
gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse (exonu... 1244 0.0
gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease, sub... 1239 0.0
gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease, sub... 1238 0.0
gi|125718261|ref|YP_001035394.1| Exonuclease RexA, putative... 1229 0.0
gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse (ex... 1229 0.0
gi|81096611|ref|ZP_00874949.1| UvrD/REP helicase [Streptoco... 1215 0.0
gi|157074608|gb|ABV09291.1| first chain of major exonucleas... 1211 0.0
gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptoco... 1120 0.0
gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptoco... 1115 0.0
gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptoco... 1115 0.0
gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptoco... 1114 0.0
gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptoco... 1113 0.0
gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcu... 1107 0.0
gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptoco... 1104 0.0
gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptoco... 1102 0.0
gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_... 1065 0.0
gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococ... 1062 0.0
gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit... 1030 0.0
gi|148989182|ref|ZP_01820572.1| exonuclease RexA [Streptoco... 909 0.0
gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subu... 790 0.0
gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease sub... 788 0.0
gi|116510847|ref|YP_808063.1| ATP-dependent exoDNAse (exonu... 787 0.0
gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lac... 786 0.0
gi|76799809|ref|ZP_00781872.1| exonuclease RexA [Streptococ... 511 e-142
gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subuni... 506 e-141
gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit... 503 e-140
gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonu... 500 e-139
gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococ... 498 e-139
gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus... 491 e-136
gi|116493558|ref|YP_805293.1| ATP-dependent exoDNAse (exonu... 479 e-133
gi|116490406|ref|YP_809950.1| ATP-dependent exoDNAse (exonu... 473 e-131
gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonu... 469 e-130
gi|16078127|ref|NP_388944.1| ATP-dependent deoxyribonucleas... 466 e-129
gi|116618575|ref|YP_818946.1| ATP-dependent exoDNAse (exonu... 466 e-129
gi|124520697|ref|ZP_01695814.1| UvrD/REP helicase [Bacillus... 456 e-126
gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1] >g... 454 e-125
gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquef... 454 e-125
gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDN... 449 e-124
gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subuni... 442 e-122
gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subuni... 439 e-121
gi|49480014|ref|YP_035378.1| ATP-dependent nuclease, subuni... 439 e-121
gi|152974673|ref|YP_001374190.1| Recombination helicase Add... 438 e-121
gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein... 438 e-121
gi|118476726|ref|YP_893877.1| ATP-dependent nuclease, subun... 438 e-120
gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonucleas... 438 e-120
gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subuni... 437 e-120
gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit... 435 e-120
gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [... 434 e-119
gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococc... 433 e-119
gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococc... 433 e-119
gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit... 432 e-119
gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [... 432 e-118
gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [S... 430 e-118
gi|15923957|ref|NP_371491.1| similar to ATP-dependent nucle... 429 e-118
gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonucle... 427 e-117
gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease, su... 423 e-116
gi|73663117|ref|YP_301898.1| putative ATP-dependent nucleas... 417 e-114
gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococc... 417 e-114
gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit... 416 e-114
gi|153953342|ref|YP_001394107.1| Predicted ATP-dependent ex... 416 e-114
gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14... 415 e-114
gi|150014906|ref|YP_001307160.1| Recombination helicase Add... 415 e-113
gi|125974531|ref|YP_001038441.1| UvrD/REP helicase [Clostri... 414 e-113
gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonucleas... 414 e-113
gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subuni... 412 e-113
gi|106894892|ref|ZP_01362004.1| UvrD/REP helicase [Clostrid... 412 e-113
gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C t... 411 e-112
gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [S... 409 e-112
gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonucleas... 407 e-111
gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse (exonuc... 402 e-109
gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse (exonu... 401 e-109
gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C ... 397 e-108
gi|110802763|ref|YP_697370.1| recombination helicase AddA [... 396 e-108
gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, sub... 396 e-108
gi|15895530|ref|NP_348879.1| ATP-dependent exonuclease (exo... 394 e-107
gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonu... 392 e-106
gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonucleas... 391 e-106
gi|89205674|ref|ZP_01184242.1| UvrD/REP helicase [Bacillus ... 391 e-106
gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subun... 390 e-106
gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [... 390 e-106
gi|150391860|ref|YP_001321909.1| Recombination helicase Add... 390 e-106
gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonu... 389 e-106
gi|153175532|ref|ZP_01930890.1| ATP-dependent nuclease, sub... 389 e-105
gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subu... 387 e-105
gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclea... 387 e-105
gi|76795469|ref|ZP_00777842.1| UvrD/REP helicase [Thermoana... 385 e-105
gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (ex... 384 e-104
gi|114843773|ref|ZP_01454234.1| UvrD/REP helicase [Thermoan... 383 e-104
gi|68054574|ref|ZP_00538731.1| UvrD/REP helicase [Exiguobac... 375 e-101
gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subu... 374 e-101
gi|153938269|ref|YP_001389808.1| recombination helicase Add... 372 e-101
gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE... 369 e-100
gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA... 367 3e-99
gi|92089399|ref|ZP_01274344.1| UvrD/REP helicase [Lactobaci... 363 4e-98
gi|148543293|ref|YP_001270663.1| Recombination helicase Add... 363 6e-98
gi|94992156|ref|YP_600255.1| ATP-dependent nuclease subunit... 361 1e-97
gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease sub... 357 2e-96
gi|148378439|ref|YP_001252980.1| ATP-dependent nuclease sub... 354 2e-95
gi|153930858|ref|YP_001382829.1| recombination helicase Add... 354 2e-95
gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, sub... 354 3e-95
gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02... 352 9e-95
gi|56808112|ref|ZP_00365901.1| COG1074: ATP-dependent exoDN... 351 2e-94
gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON... 350 4e-94
gi|153196984|ref|ZP_01941283.1| ATP-dependent nuclease, sub... 346 6e-93
gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [... 345 1e-92
gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR... 345 1e-92
gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subun... 341 1e-91
gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothe... 341 2e-91
gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [... 341 2e-91
gi|109644814|ref|ZP_01368734.1| UvrD/REP helicase [Desulfit... 340 3e-91
gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN... 339 8e-91
gi|28210435|ref|NP_781379.1| ATP-dependent nuclease subunit... 336 7e-90
gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subuni... 331 2e-88
gi|153168176|ref|ZP_01928186.1| ATP-dependent nuclease, sub... 328 2e-87
gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_033... 320 5e-85
gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [L... 300 5e-79
gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subun... 293 4e-77
gi|118726541|ref|ZP_01575165.1| ATP-dependent nuclease subu... 287 4e-75
gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain pro... 283 5e-74
gi|145954748|ref|ZP_01803752.1| hypothetical protein CdifQ_... 282 1e-73
gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP... 278 1e-72
gi|106887037|ref|ZP_01354359.1| UvrD/REP helicase [Clostrid... 236 7e-60
gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit... 213 5e-53
gi|116621025|ref|YP_823181.1| UvrD/REP helicase [Solibacter... 179 2e-42
gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methano... 171 3e-40
gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta su... 169 9e-40
gi|83589346|ref|YP_429355.1| UvrD/REP helicase [Moorella th... 169 1e-39
gi|148989180|ref|ZP_01820570.1| exonuclease RexA [Streptoco... 160 6e-37
gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA he... 153 7e-35
gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonucleas... 144 4e-32
gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervido... 136 1e-29
gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuc... 134 3e-29
gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc794... 131 3e-28
gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctom... 129 1e-27
gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00... 128 2e-27
gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c... 128 3e-27
gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135... 127 6e-27
gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter... 125 3e-26
gi|109647240|ref|ZP_01371144.1| ATP-dependent DNA helicase ... 124 4e-26
gi|114568640|ref|YP_755320.1| UvrD/REP helicase [Maricaulis... 123 1e-25
gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [... 123 1e-25
gi|118726540|ref|ZP_01575164.1| UvrD/REP helicase [Clostrid... 123 1e-25
gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase ... 122 1e-25
gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter... 122 2e-25
gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pe... 120 5e-25
gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xa... 120 7e-25
gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_... 120 8e-25
gi|42520239|ref|NP_966154.1| helicase, UvrD/Rep/AddA family... 119 1e-24
gi|76260507|ref|ZP_00768142.1| UvrD/REP helicase [Chlorofle... 119 1e-24
gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase, Uv... 119 1e-24
gi|145620384|ref|ZP_01776416.1| UvrD/REP helicase [Geobacte... 119 1e-24
gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xa... 119 2e-24
gi|145622438|ref|ZP_01778397.1| UvrD/REP helicase [Petrotog... 118 3e-24
gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xa... 118 3e-24
gi|118746447|ref|ZP_01594387.1| UvrD/REP helicase [Geobacte... 118 3e-24
gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase Pcr... 118 3e-24
gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xa... 117 4e-24
gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase Pcr... 117 5e-24
gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuro... 116 9e-24
gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase... 116 1e-23
gi|121601832|ref|YP_989604.1| double-strand break repair he... 115 2e-23
gi|89210597|ref|ZP_01188985.1| ATP-dependent DNA helicase P... 115 2e-23
gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase, Uv... 115 3e-23
gi|153886695|ref|ZP_02007849.1| UvrD/REP helicase [Ralstoni... 114 5e-23
gi|126355107|ref|ZP_01712113.1| UvrD/REP helicase [Pseudomo... 114 6e-23
gi|116513593|ref|YP_812499.1| Superfamily I DNA and RNA hel... 113 8e-23
gi|76258368|ref|ZP_00766024.1| UvrD/REP helicase [Chlorofle... 113 8e-23
gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase Pc... 113 1e-22
gi|121529938|ref|ZP_01662548.1| conserved hypothetical prot... 112 1e-22
gi|42524524|ref|NP_969904.1| probable exonuclease RexA [Bde... 112 1e-22
gi|134093954|ref|YP_001099029.1| putative exonuclease V [He... 112 2e-22
gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase Pcr... 112 2e-22
gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0... 111 3e-22
gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subun... 111 3e-22
gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease ... 111 4e-22
gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermos... 110 6e-22
gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostri... 110 7e-22
gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase Pcr... 110 7e-22
gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase Pcr... 109 1e-21
gi|71065150|ref|YP_263877.1| putative ATP-dependent DNA hel... 109 2e-21
gi|93005402|ref|YP_579839.1| UvrD/REP helicase [Psychrobact... 109 2e-21
gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehaloc... 108 2e-21
gi|146318385|ref|YP_001198097.1| Superfamily I DNA and RNA ... 108 2e-21
gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [St... 108 2e-21
gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase... 108 2e-21
gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaerom... 108 3e-21
gi|72383505|ref|YP_292860.1| superfamily I DNA/RNA helicase... 107 4e-21
gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [... 107 4e-21
gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase Pcr... 107 4e-21
gi|156451646|ref|ZP_02058021.1| UvrD/REP helicase [Methylob... 107 5e-21
gi|154174762|ref|YP_001408534.1| helicase, UvrD/Rep family ... 107 5e-21
gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospir... 107 6e-21
gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlo... 107 6e-21
gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bd... 107 6e-21
gi|91774719|ref|YP_544475.1| UvrD/REP helicase [Methylobaci... 107 8e-21
gi|148653621|ref|YP_001280714.1| UvrD/REP helicase [Psychro... 106 1e-20
gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA... 106 1e-20
gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase Pc... 106 1e-20
gi|73540567|ref|YP_295087.1| UvrD/REP helicase [Ralstonia e... 106 1e-20
gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudo... 105 1e-20
gi|118047035|ref|ZP_01515678.1| UvrD/REP helicase [Chlorofl... 105 1e-20
gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [St... 105 1e-20
gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase Pcr... 105 1e-20
gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia c... 105 1e-20
gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase Pc... 105 2e-20
gi|119879346|ref|ZP_01646098.1| ATP-dependent DNA helicase ... 105 2e-20
gi|94311565|ref|YP_584775.1| UvrD/REP helicase [Ralstonia m... 105 2e-20
gi|106895466|ref|ZP_01362558.1| ATP-dependent DNA helicase ... 105 2e-20
gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase Pcr... 105 3e-20
gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO... 105 3e-20
gi|21672830|ref|NP_660897.1| ATP-dependent DNA helicase Rep... 104 3e-20
gi|54295644|ref|YP_128059.1| ATP-dependent DNA helicase Rep... 104 3e-20
gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase Pc... 104 4e-20
gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase... 104 4e-20
gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subuni... 104 5e-20
gi|94502048|ref|ZP_01308553.1| ATP-dependent DNA helicase R... 104 5e-20
gi|28211985|ref|NP_782929.1| DNA helicase [Clostridium teta... 103 5e-20
gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase Pc... 103 5e-20
gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase R... 103 6e-20
gi|68054841|ref|ZP_00538991.1| ATP-dependent DNA helicase P... 103 6e-20
gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA h... 103 6e-20
gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase I... 103 6e-20
gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase... 103 7e-20
gi|148361128|ref|YP_001252335.1| ATP-dependent DNA helicase... 103 8e-20
gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase... 103 8e-20
gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA an... 103 8e-20
gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [St... 103 8e-20
gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase... 103 9e-20
gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366... 103 9e-20
gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Ge... 103 1e-19
gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [St... 103 1e-19
gi|52843012|ref|YP_096811.1| ATP-dependent DNA helicase Rep... 103 1e-19
gi|46445668|ref|YP_007033.1| probable ATP-dependent DNA hel... 103 1e-19
gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA fami... 102 1e-19
gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [My... 102 1e-19
gi|54298803|ref|YP_125172.1| ATP-dependent DNA helicase Rep... 102 1e-19
gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter... 102 1e-19
gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase Pcr... 102 1e-19
gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus... 102 2e-19
gi|145954747|ref|ZP_01803751.1| hypothetical protein CdifQ_... 102 2e-19
gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and ... 102 2e-19
gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechoco... 102 2e-19
gi|81097354|ref|ZP_00875645.1| ATP-dependent DNA helicase P... 102 2e-19
gi|89256441|ref|YP_513803.1| ATP-dependent DNA helicase [Fr... 102 2e-19
gi|57240466|ref|ZP_00368415.1| DNA helicase II (uvrD) [Camp... 102 2e-19
gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase, Uv... 102 2e-19
gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase ... 102 2e-19
gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter m... 101 3e-19
gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [St... 101 3e-19
gi|134253589|gb|EBA52683.1| ATP-dependent DNA helicase [Fra... 101 3e-19
gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase Pcr... 101 3e-19
gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE... 101 3e-19
gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase ... 101 3e-19
gi|116627783|ref|YP_820402.1| Superfamily I DNA and RNA hel... 101 3e-19
gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [... 101 3e-19
gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [St... 101 3e-19
gi|62290945|ref|YP_222738.1| helicase, UvrD/Rep family [Bru... 101 3e-19
gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [St... 101 3e-19
gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase Pc... 101 3e-19
gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [St... 101 3e-19
gi|153062|gb|AAA72091.1| helicase >gi|742312|prf||2009360A ... 101 3e-19
gi|153160277|ref|ZP_01373848.2| ATP-dependent DNA helicase ... 101 3e-19
gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase... 101 4e-19
gi|157101490|gb|EAT97790.2| UDP-N-acetylglucosamine 1-carbo... 101 4e-19
gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia... 101 4e-19
gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus... 100 5e-19
gi|19746195|ref|NP_607331.1| putative ATP-dependent DNA hel... 100 5e-19
gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase [St... 100 5e-19
gi|15675225|ref|NP_269399.1| putative ATP-dependent DNA hel... 100 6e-19
gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcr... 100 6e-19
gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase P... 100 6e-19
gi|118070903|ref|ZP_01539101.1| ATP-dependent DNA helicase ... 100 6e-19
gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [... 100 6e-19
gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase ... 100 6e-19
gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [... 100 6e-19
gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus... 100 6e-19
gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus... 100 6e-19
gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis] 100 6e-19
gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobact... 100 6e-19
gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus... 100 7e-19
gi|25011258|ref|NP_735653.1| hypothetical protein gbs1209 [... 100 7e-19
gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineoco... 100 7e-19
gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II ... 100 8e-19
gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase P... 100 8e-19
gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase Pcr... 100 9e-19
gi|113868708|ref|YP_727197.1| Superfamily I DNA and RNA hel... 100 9e-19
gi|68550900|ref|ZP_00590335.1| Exodeoxyribonuclease V, beta... 100 9e-19
gi|56964274|ref|YP_176005.1| ATP-dependent DNA helicase, Uv... 100 9e-19
gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrosp... 100 9e-19
gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [S... 100 1e-18
gi|147678864|ref|YP_001213079.1| superfamily I DNA and RNA ... 100 1e-18
gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Pcr... 100 1e-18
gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter... 100 1e-18
gi|56708170|ref|YP_170066.1| ATP-dependent DNA helicase [Fr... 100 1e-18
gi|78221316|ref|YP_383063.1| UvrD/REP helicase [Geobacter m... 100 1e-18
gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR... 100 1e-18
gi|148985059|ref|ZP_01818302.1| methionine aminopeptidase [... 100 1e-18
gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquef... 100 1e-18
gi|114561615|ref|YP_749128.1| ATP-dependent DNA helicase Re... 100 1e-18
gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase Pcr... 100 1e-18
gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseifl... 99 1e-18
gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase P... 99 1e-18
gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase Pcr... 99 1e-18
gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Ba... 99 1e-18
gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase Pcr... 99 1e-18
gi|62261380|gb|AAX77985.1| unknown protein [synthetic const... 99 1e-18
gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bo... 99 1e-18
gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus th... 99 1e-18
gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [C... 99 1e-18
gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA... 99 2e-18
gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent hel... 99 2e-18
gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (IS... 99 2e-18
gi|145219316|ref|YP_001130025.1| UvrD/REP helicase [Prosthe... 99 2e-18
gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Ba... 99 2e-18
gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase ... 99 2e-18
gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase P... 99 2e-18
gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cere... 99 2e-18
gi|116493117|ref|YP_804852.1| Superfamily I DNA and RNA hel... 99 2e-18
gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri... 99 2e-18
gi|3024353|sp|P56255|PCRA_BACST ATP-dependent DNA helicase ... 99 2e-18
gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase R... 99 2e-18
gi|116620297|ref|YP_822453.1| UvrD/REP helicase [Solibacter... 99 3e-18
gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xy... 99 3e-18
gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase Pcr... 99 3e-18
gi|118476054|ref|YP_893205.1| ATP-dependent DNA helicase [B... 99 3e-18
gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Fla... 98 3e-18
gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase... 98 3e-18
gi|117926757|ref|YP_867374.1| UvrD/REP helicase [Magnetococ... 98 3e-18
gi|106884818|ref|ZP_01352185.1| UvrD/REP helicase [Clostrid... 98 4e-18
gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Ba... 98 4e-18
gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bo... 98 4e-18
gi|119776398|ref|YP_929138.1| ATP-dependent DNA helicase Re... 98 4e-18
gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_019... 98 4e-18
gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomona... 97 5e-18
gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Az... 97 5e-18
gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase R... 97 6e-18
gi|67919148|ref|ZP_00512734.1| UvrD/REP helicase [Chlorobiu... 97 6e-18
gi|153835500|ref|ZP_01988167.1| ATP-dependent DNA helicase ... 97 6e-18
gi|114771973|ref|ZP_01449362.1| Superfamily I DNA helicase,... 97 6e-18
gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase... 97 6e-18
gi|56551470|ref|YP_162309.1| DNA and RNA helicase [Zymomona... 97 7e-18
gi|121541496|ref|ZP_01673247.1| exodeoxyribonuclease V, bet... 97 7e-18
gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN... 97 7e-18
gi|150385927|ref|ZP_01924517.1| UvrD/REP helicase [Victival... 97 7e-18
gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavoba... 97 7e-18
gi|15617184|ref|NP_240397.1| ATP-dependent DNA helicase Rep... 97 7e-18
gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta ... 97 8e-18
gi|117918831|ref|YP_868023.1| ATP-dependent DNA helicase Re... 97 8e-18
gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonu... 97 9e-18
gi|156972811|ref|YP_001443718.1| hypothetical protein VIBHA... 97 9e-18
gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase Pc... 97 9e-18
gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase [Cl... 97 9e-18
gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase Pc... 97 9e-18
gi|113968720|ref|YP_732513.1| ATP-dependent DNA helicase Re... 97 9e-18
gi|78186341|ref|YP_374384.1| DNA helicase II [Pelodictyon l... 97 1e-17
gi|57242258|ref|ZP_00370197.1| DNA helicase II (uvrD) [Camp... 97 1e-17
gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase... 97 1e-17
gi|51598860|ref|YP_073048.1| rep helicase, single-stranded ... 97 1e-17
gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase... 96 1e-17
gi|153002493|ref|YP_001368174.1| ATP-dependent DNA helicase... 96 1e-17
gi|89204795|ref|ZP_01183371.1| ATP-dependent DNA helicase P... 96 1e-17
gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bo... 96 1e-17
gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, ... 96 1e-17
gi|148981244|ref|ZP_01816335.1| ATP-dependent DNA helicase ... 96 1e-17
gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II... 96 1e-17
gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase ... 96 1e-17
gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella pa... 96 1e-17
gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pe... 96 1e-17
gi|114049137|ref|YP_739687.1| ATP-dependent DNA helicase Re... 96 1e-17
gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp.... 96 1e-17
gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [L... 96 1e-17
gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [St... 96 2e-17
gi|20807099|ref|NP_622270.1| Superfamily I DNA and RNA heli... 96 2e-17
gi|15594952|ref|NP_212741.1| rep helicase, single-stranded ... 96 2e-17
gi|153854122|ref|ZP_01995430.1| hypothetical protein DORLON... 96 2e-17
gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Ba... 96 2e-17
gi|116511959|ref|YP_809175.1| Superfamily I DNA or RNA heli... 96 2e-17
gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Pcr... 96 2e-17
gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase Pc... 96 2e-17
gi|91791771|ref|YP_561422.1| ATP-dependent DNA helicase Rep... 96 2e-17
gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlo... 96 2e-17
gi|148284261|ref|YP_001248351.1| ATP-dependent helicase, Uv... 96 2e-17
gi|113947666|ref|ZP_01433331.1| ATP-dependent DNA helicase ... 96 2e-17
gi|149114256|ref|ZP_01841010.1| ATP-dependent DNA helicase ... 96 2e-17
gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PC... 96 2e-17
gi|24375807|ref|NP_719850.1| ATP-dependent DNA helicase Rep... 96 2e-17
gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase Pc... 95 2e-17
gi|94311069|ref|YP_584279.1| UvrD/REP helicase [Ralstonia m... 95 2e-17
gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase... 95 2e-17
gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase Pcr... 95 2e-17
gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia ... 95 3e-17
gi|92088782|ref|ZP_01273740.1| ATP-dependent DNA helicase P... 95 3e-17
gi|111115437|ref|YP_710055.1| rep helicase, single-stranded... 95 3e-17
gi|58617374|ref|YP_196573.1| Putative Exodeoxyribonuclease ... 95 3e-17
gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14... 95 3e-17
gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophil... 95 3e-17
gi|126176198|ref|YP_001052347.1| ATP-dependent DNA helicase... 95 3e-17
gi|76057858|emb|CAJ18308.1| ATP-dependant helicase [Paeniba... 95 3e-17
gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Pr... 95 4e-17
gi|127511239|ref|YP_001092436.1| ATP-dependent DNA helicase... 95 4e-17
gi|134295512|ref|YP_001119247.1| UvrD/REP helicase [Burkhol... 95 4e-17
gi|116747950|ref|YP_844637.1| UvrD/REP helicase [Syntrophob... 95 4e-17
gi|95926825|ref|ZP_01309597.1| hypothetical protein CburR_0... 95 4e-17
gi|116183305|ref|ZP_01473328.1| hypothetical protein VEx2w_... 95 4e-17
gi|154499859|ref|ZP_02037897.1| hypothetical protein BACCAP... 95 4e-17
gi|84394502|ref|ZP_00993213.1| ATP-dependent DNA helicase R... 94 4e-17
gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus ph... 94 4e-17
gi|114565925|ref|YP_753079.1| Superfamily I DNA and RNA hel... 94 5e-17
gi|154174808|ref|YP_001407581.1| ATP-dependent DNA helicase... 94 5e-17
gi|91228869|ref|ZP_01262773.1| ATP-dependent DNA helicase R... 94 5e-17
gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlo... 94 5e-17
gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochloroco... 94 5e-17
gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oc... 94 6e-17
gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldice... 94 6e-17
gi|34762638|ref|ZP_00143631.1| ATP-dependent DNA helicase p... 94 6e-17
gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase... 94 6e-17
gi|78778691|ref|YP_396803.1| uvrD/REP helicase [Prochloroco... 94 7e-17
gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synecho... 94 7e-17
gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Ba... 94 7e-17
gi|32266857|ref|NP_860889.1| DNA helicase II [Helicobacter ... 94 7e-17
gi|118048910|ref|ZP_01517465.1| UvrD/REP helicase [Chlorofl... 94 7e-17
gi|120600524|ref|YP_965098.1| ATP-dependent DNA helicase Re... 94 7e-17
gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlo... 94 7e-17
gi|156935891|ref|YP_001439807.1| hypothetical protein ESA_0... 94 7e-17
gi|39939107|ref|NP_950873.1| ATP-dependent DNA helicase [On... 94 7e-17
gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella av... 94 7e-17
gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1] >g... 94 8e-17
gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bo... 94 8e-17
gi|146294682|ref|YP_001185106.1| ATP-dependent DNA helicase... 94 8e-17
gi|124546397|ref|ZP_01705493.1| ATP-dependent DNA helicase ... 94 8e-17
gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tr... 94 9e-17
gi|15895932|ref|NP_349281.1| ATP-dependent superfamily I DN... 94 9e-17
gi|77957841|ref|ZP_00821887.1| COG0210: Superfamily I DNA a... 94 9e-17
gi|15604569|ref|NP_221087.1| ATP-DEPENDENT NUCLEASE SUBUNIT... 93 1e-16
gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase... 93 1e-16
gi|91203329|emb|CAJ72968.1| strongly similar to ATP-depende... 93 1e-16
gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacter... 93 1e-16
gi|15639096|ref|NP_218542.1| rep helicase, single-stranded ... 93 1e-16
gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease ... 93 1e-16
gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP... 93 1e-16
gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides... 93 1e-16
gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase,... 93 1e-16
gi|120553399|ref|YP_957750.1| ATP-dependent DNA helicase Re... 93 1e-16
gi|148654325|ref|YP_001274530.1| UvrD/REP helicase [Roseifl... 93 1e-16
gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [St... 93 1e-16
gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tr... 93 1e-16
gi|70888451|gb|AAZ13818.1| ATP-dependent DNA helicase Rep [... 93 1e-16
gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase Pc... 93 1e-16
gi|29654533|ref|NP_820225.1| UvrD/REP helicase family prote... 93 1e-16
gi|154707778|ref|YP_001424668.1| UvrD/REP helicase family p... 93 1e-16
gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactob... 93 1e-16
gi|150378796|ref|ZP_01917993.1| ATP-dependent DNA helicase ... 93 1e-16
gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [M... 93 1e-16
gi|118727380|ref|ZP_01575982.1| ATP-dependent DNA helicase ... 93 2e-16
gi|108803668|ref|YP_643605.1| UvrD/REP helicase [Rubrobacte... 92 2e-16
gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family pr... 92 2e-16
gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gl... 92 2e-16
gi|77461740|ref|YP_351247.1| ATP-dependent DNA helicase Rep... 92 2e-16
gi|77960590|ref|ZP_00824455.1| COG0210: Superfamily I DNA a... 92 2e-16
gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamyd... 92 2e-16
gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase... 92 2e-16
gi|15600489|ref|NP_253983.1| ATP-dependent DNA helicase Rep... 92 2e-16
gi|70733315|ref|YP_263089.1| ATP-dependent DNA helicase Rep... 92 2e-16
gi|15793060|ref|NP_282882.1| DNA helicase II [Neisseria men... 92 2e-16
gi|86141573|ref|ZP_01060119.1| putative helicase [Flavobact... 92 2e-16
gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Co... 92 2e-16
gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase... 92 2e-16
gi|152991215|ref|YP_001356937.1| ATP-dependent DNA helicase... 92 2e-16
gi|28867353|ref|NP_789972.1| ATP-dependent DNA helicase Rep... 92 2e-16
gi|46447235|ref|YP_008600.1| probable ATP-dependent DNA hel... 92 2e-16
gi|84518623|ref|ZP_01005972.1| Superfamily protein I DNA/RN... 92 2e-16
gi|81428522|ref|YP_395522.1| ATP-dependent exonuclease, sub... 92 3e-16
gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavoba... 92 3e-16
gi|152987564|ref|YP_001351386.1| ATP-dependent DNA helicase... 92 3e-16
gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase R... 92 3e-16
gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [... 92 3e-16
gi|145621041|ref|ZP_01777044.1| UvrD/REP helicase [Geobacte... 92 3e-16
gi|88608415|ref|YP_506245.1| helicase, UvrD/Rep family [Neo... 92 3e-16
gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacteri... 92 3e-16
gi|85057395|ref|YP_456311.1| UvrD helicase [Aster yellows w... 91 4e-16
gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Pcr... 91 4e-16
gi|71735974|ref|YP_272392.1| ATP-dependent DNA helicase Rep... 91 4e-16
gi|109948205|ref|YP_665433.1| ATP-dependent DNA helicase [H... 91 4e-16
gi|77919306|ref|YP_357121.1| ATP-dependent exoDNase (exonuc... 91 4e-16
>gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159]
gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159]
Length = 1212
Score = 2248 bits (5824), Expect = 0.0, Method: Composition-based stats.
Identities = 1212/1212 (100%), Positives = 1212/1212 (100%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER
Sbjct: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT
Sbjct: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF
Sbjct: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV
Sbjct: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD
Sbjct: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ
Sbjct: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH
Sbjct: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
Sbjct: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN
Sbjct: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI
Sbjct: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL
Sbjct: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI
Sbjct: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD
Sbjct: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM
Sbjct: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE
Sbjct: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
Query: 901 KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG 960
KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG
Sbjct: 901 KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG 960
Query: 961 SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP 1020
SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP
Sbjct: 961 SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP 1020
Query: 1021 VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT
Sbjct: 1021 VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
Query: 1081 ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV 1140
ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV
Sbjct: 1081 ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV 1140
Query: 1141 VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI 1200
VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI
Sbjct: 1141 VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI 1200
Query: 1201 LLGGEKLEVVEI 1212
LLGGEKLEVVEI
Sbjct: 1201 LLGGEKLEVVEI 1212
>gi|25010945|ref|NP_735340.1| hypothetical protein gbs0891 [Streptococcus agalactiae NEM316]
gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515]
gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316]
gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515]
Length = 1207
Score = 1627 bits (4214), Expect = 0.0, Method: Composition-based stats.
Identities = 852/1214 (70%), Positives = 1006/1214 (82%), Gaps = 10/1214 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFL ++IA +Q +E SDKKQKRTPEQIEAIYT G N+LVSASAGSGKTFVM+ER
Sbjct: 1 MTFKPFLNPEDIAVIQTEEKNSDKKQKRTPEQIEAIYTFGNNVLVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+LRGV ID LFISTFTVKAAGELKERLEKKI E L+ LKQFL++QL+G+QT
Sbjct: 61 ILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKINESLKSAESDDLKQFLTQQLVGIQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQK+V QYGYTLGISP FRILQDK+EQD++KN+V+ DLF+DY TG A F
Sbjct: 121 ADIGTMDAFTQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAASF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF+GNRKDS FR+++YK+Y FSQ+TDNP+RW+ FLKGA TY DF AIP+QEV
Sbjct: 181 IKLVKNFSGNRKDSKAFREMVYKVYAFSQSTDNPKRWMQTVFLKGAQTYTDFEAIPDQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
LN +Q TA LRD+TD EDYKQ+TAKG PTA Y++HLK+IE L W F+ LYG+
Sbjct: 241 SSLLNVMQTTANQLRDLTDQEDYKQLTAKGVPTANYKKHLKIIENLVHWSQDFNLLYGKK 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL LA DI +IPSGNDVTVAGVKYP+F+ LH+R+ GLKHLE IFKYQ +SL LL++LQ
Sbjct: 301 GLANLARDITNVIPSGNDVTVAGVKYPIFKQLHNRIVGLKHLEVIFKYQGESLFLLELLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SF LDFS+QYLQ K+QENAFEFSDIAHFAIQILEEN IRQLY DKYHEVMVDEYQDNNH
Sbjct: 361 SFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN K+K +Q++P GKLI+LKENFR
Sbjct: 421 TQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKYKAYQDNPSQGKLIILKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLD+TNSVFTHLMDE VG+ILYD++HQL AGS Q+ +P N+TQVL+ DT +
Sbjct: 481 SQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDI 540
Query: 541 QDLAVEDDSNQ--ISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598
D DS Q IS E KLVAKEIIRLH EE V F+DITLLVSSRTRNDGILQTFD Y
Sbjct: 541 ND----SDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGILQTFDRY 596
Query: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658
GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF F+EDDL R+A+Q
Sbjct: 597 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLTRIAIQ 656
Query: 659 NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW 718
++ K Y K++ + + +G LIT LS+K+D F +TF +WR+F+ +SLYDLIW
Sbjct: 657 DV----KMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLIW 712
Query: 719 KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778
KIYND+FYYDYVG+LPK+EQRQANLYALALRA+ FEKTGFKGLSRFIRMIDK+LEN+NDL
Sbjct: 713 KIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENENDL 772
Query: 779 ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIA 838
ADVEVALP+NAV LMTIHKSKGLEFKYVFILNIDKKFS+ D+TSPLILSR G+GIKY+A
Sbjct: 773 ADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVA 832
Query: 839 DMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGS 898
DM+ ELEE+LLP VKVSM+TLPYQLNKRELRLATLSEQMRLLYVAMTR+EKKLYLVGK S
Sbjct: 833 DMRHELEEELLPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKAS 892
Query: 899 QEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDK 958
Q K D YD SENNHLP+A RE ++TFQDWLLA+ Y EL + +F++ E+LT+
Sbjct: 893 QTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHH 952
Query: 959 MGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFY 1018
+G + ++ DN +NRQS+DI RA+ +LE+VE++NQ YKAAI LPTVRTPSQ+KKFY
Sbjct: 953 IGMVNPSLPFNPDNKAENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKFY 1012
Query: 1019 EPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDI 1078
EP+++ EGV+VM+T +T F+LP FS KQDP ALGS+VHELMQR+ +S V +EDI
Sbjct: 1013 EPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDI 1072
Query: 1079 LTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGED 1138
AL E++ E +VK AIQ++KI +FFQ + LGK IQ + ++REAPFAML+ DP SGE
Sbjct: 1073 QKALTEVNAETSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPESGEK 1132
Query: 1139 YVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSY 1198
+VVRGIIDGY+L +NRI+LFDYKTDKF N +KERY+GQM LYA+AL +SY I+++D Y
Sbjct: 1133 FVVRGIIDGYLLLENRIILFDYKTDKFVNPLELKERYQGQMALYAEALKKSYEIEKIDKY 1192
Query: 1199 LILLGGEKLEVVEI 1212
LILLGG++LEVV++
Sbjct: 1193 LILLGGKQLEVVKM 1206
>gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909]
gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909]
gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
Length = 1207
Score = 1617 bits (4186), Expect = 0.0, Method: Composition-based stats.
Identities = 848/1212 (69%), Positives = 1004/1212 (82%), Gaps = 6/1212 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFL ++IA +Q +E SDKKQKRTPEQIEAIYT G N+LVSASAGSGKTFVM+ER
Sbjct: 1 MTFKPFLNPEDIAVIQTEEKNSDKKQKRTPEQIEAIYTFGNNVLVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+LRGV ID LFISTFTVKAAGELKERLEKKI E L+ LKQFL++QL+G+QT
Sbjct: 61 ILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKINESLKSAESDDLKQFLTQQLVGIQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQK+V QYGYTLGISP FRILQDK+EQD++KN+V+ DLF+DY TG A F
Sbjct: 121 ADIGTMDAFTQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAASF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF+GNRKDS FR+++YK+Y FSQ+TDNP+RW+ FLKGA TY DF AIP+QEV
Sbjct: 181 IKLVKNFSGNRKDSKAFREMVYKVYAFSQSTDNPKRWMQTVFLKGAQTYTDFEAIPDQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
LN +Q TA LRD+TD EDYKQ+TAKG PTA Y++HLK+IE L W F+ LYG+
Sbjct: 241 SSLLNVMQTTANQLRDLTDQEDYKQLTAKGVPTANYKKHLKIIENLVHWSQDFNLLYGKK 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL LA DI +IPSGNDVTVAGVKYP+F+ LH+R+ GLKHLE IFKYQ +SL LL++LQ
Sbjct: 301 GLTNLARDITNVIPSGNDVTVAGVKYPIFKQLHNRIVGLKHLEVIFKYQGESLFLLELLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SF LDFS+QYLQ K+QENAFEFSDIAHFAIQILEEN IRQLY DKYHEVMVDEYQDNNH
Sbjct: 361 SFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN K+K +Q++P GKLI+LKENFR
Sbjct: 421 TQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKYKAYQDNPSQGKLIILKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLD+TNSVFTHLMDE VG+ILYD++HQL AGS Q+ +P N+TQVL+ DT +
Sbjct: 481 SQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDI 540
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
D + IS E KLVAKEIIRLH EE V F+DITLLVSSRTRNDGILQTFD YGI
Sbjct: 541 DDSDSQ--QYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGILQTFDRYGI 598
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF F+EDDL R+A+Q++
Sbjct: 599 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLTRIAIQDV 658
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
K Y K++ + + +G LIT LS+K+D F +TF +WR+F+ +SLYDLIWKI
Sbjct: 659 ----KMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLIWKI 714
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YND+FYYDYVG+LPK+EQRQANLYALALRA+ FEKTGFKGLSRFIRMIDK+LEN+NDLAD
Sbjct: 715 YNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENENDLAD 774
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
VEVALP+NAV LMTIHKSKGLEFKYVFILNIDKKFS+ D+TSPLILSR G+GIKY+ADM
Sbjct: 775 VEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVADM 834
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
+ ELEE++LP VKVSM+TLPYQLNKRELRLATLSEQMRLLYVAMTR+EKKLYLVGK SQ
Sbjct: 835 RHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKASQT 894
Query: 901 KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG 960
K D YD SENNHLP+A RE ++TFQDWLLA+ Y EL + +F++ E+LT+ +G
Sbjct: 895 KWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHHIG 954
Query: 961 SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP 1020
+ ++ DN +NRQS+DI RA+ +LE+VE++NQ YKAAI LPTVRTPSQ+KKFYEP
Sbjct: 955 MVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKFYEP 1014
Query: 1021 VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
+++ EGV+VM+T +T F+LP FS KQDP ALGS+VHELMQR+ +S V +EDI
Sbjct: 1015 ILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDIQK 1074
Query: 1081 ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV 1140
AL E++ E +VK AIQ++KI +FFQ + LGK IQ + ++REAPFAML+ DP SGE +V
Sbjct: 1075 ALTEVNAETSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPESGEKFV 1134
Query: 1141 VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI 1200
VRGIIDGY+L +NRI+LFDYKTDKF N +KERY+GQM LYA+AL +SY I+++D YLI
Sbjct: 1135 VRGIIDGYLLLENRIILFDYKTDKFVNPLELKERYQGQMALYAEALKKSYEIEKIDKYLI 1194
Query: 1201 LLGGEKLEVVEI 1212
LLGG++LEVV++
Sbjct: 1195 LLGGKQLEVVKM 1206
>gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R]
gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R]
Length = 1207
Score = 1614 bits (4180), Expect = 0.0, Method: Composition-based stats.
Identities = 847/1212 (69%), Positives = 1003/1212 (82%), Gaps = 6/1212 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFL ++IA +Q +E SDKKQKRTPEQIEAIYT G N+LVSASAGSGKTFVM+ER
Sbjct: 1 MTFKPFLNPEDIAVIQTEEKNSDKKQKRTPEQIEAIYTFGNNVLVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+LRGV ID LFISTFTVKAAGELKERLEKKI E L+ LKQFL++QL+G+QT
Sbjct: 61 ILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKINESLKSAESDDLKQFLTQQLVGIQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQK+V QYGYTLGISP FRILQDK+EQD++KN+V+ DLF+DY TG A F
Sbjct: 121 ADIGTMDAFTQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAASF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF+GNRKDS FR+++YK+Y FSQ+TDNP+RW+ FLKGA TY DF AIP+QEV
Sbjct: 181 IKLVKNFSGNRKDSKAFREMVYKVYAFSQSTDNPKRWMQTVFLKGAQTYTDFEAIPDQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
LN +Q TA LRD+TD EDYKQ+TAKG PTA Y++HLK+IE L W F+ LYG+
Sbjct: 241 SSLLNVMQTTANQLRDLTDQEDYKQLTAKGVPTANYKKHLKIIENLVHWSQDFNLLYGKK 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL LA DI +IPSGNDVTVAGVKYP+F+ LH+R+ GLKHLE IFKYQ +SL LL++LQ
Sbjct: 301 GLTNLARDITNVIPSGNDVTVAGVKYPIFKQLHNRIVGLKHLEVIFKYQGESLFLLELLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SF LDFS+QYLQ K+QENAFEFSDIAHFAIQILEEN IRQLY DKYHEVMVDEYQDNNH
Sbjct: 361 SFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN K+K +Q++P GKLI+LKENFR
Sbjct: 421 TQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKYKAYQDNPSQGKLIILKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLD+TNSVFTHLMDE VG+ILYD++HQL AGS Q+ +P N+TQVL+ DT +
Sbjct: 481 SQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDI 540
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
D + IS E KLVAKEIIRLH EE V F+DITLLVSSRTRNDGILQTFD YGI
Sbjct: 541 DDSDSQ--QYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGILQTFDRYGI 598
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF F+EDDL R+A+Q++
Sbjct: 599 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLTRIAIQDV 658
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
K Y K++ + + +G LIT LS+K+D F +TF +WR+F+ +SLYDLIWKI
Sbjct: 659 ----KMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLIWKI 714
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YND+FYYDYVG+LPK+EQRQANLYALALRA+ FEKTGFKGLSRFIRMIDK+LEN+NDLAD
Sbjct: 715 YNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENENDLAD 774
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
VEVALP+NAV LMTIHKSKGLEFKYVFILNIDKKFS+ D+TSPLILSR G+GIKY+ADM
Sbjct: 775 VEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVADM 834
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
+ ELEE++LP VKVSM+TLPYQLNKRELRLATLSEQMRLLYVAMTR+EKKLYLVGK SQ
Sbjct: 835 RHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKASQT 894
Query: 901 KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG 960
K D YD SENNHLP+A RE ++TFQDWLLA+ Y EL + +F++ E+LT+ +G
Sbjct: 895 KWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHHIG 954
Query: 961 SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP 1020
+ ++ DN +NRQS+DI RA+ +LE+VE++NQ YKAAI LPTVRTPSQ+KK YEP
Sbjct: 955 MVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKIYEP 1014
Query: 1021 VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
+++ EGV+VM+T +T F+LP FS KQDP ALGS+VHELMQR+ +S V +EDI
Sbjct: 1015 ILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDIQK 1074
Query: 1081 ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV 1140
AL E++ E +VK AIQ++KI +FFQ + LGK IQ + ++REAPFAML+ DP SGE +V
Sbjct: 1075 ALTEVNAETSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPESGEKFV 1134
Query: 1141 VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI 1200
VRGIIDGY+L +NRI+LFDYKTDKF N +KERY+GQM LYA+AL +SY I+++D YLI
Sbjct: 1135 VRGIIDGYLLLENRIILFDYKTDKFVNPLELKERYQGQMALYAEALKKSYEIEKIDKYLI 1194
Query: 1201 LLGGEKLEVVEI 1212
LLGG++LEVV++
Sbjct: 1195 LLGGKQLEVVKM 1206
>gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
Length = 1207
Score = 1607 bits (4161), Expect = 0.0, Method: Composition-based stats.
Identities = 840/1212 (69%), Positives = 1001/1212 (82%), Gaps = 6/1212 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFL ++IA +Q +E SDKKQKRTPEQIEAIYT G N+LVSASAGSGKTFVM+ER
Sbjct: 1 MTFKPFLNPEDIAVIQTEEKNSDKKQKRTPEQIEAIYTFGNNVLVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+LRGV I+ LFISTFTVKAAGELKERLEKKI E L+ LKQFL++QL+G+QT
Sbjct: 61 ILDKLLRGVPIESLFISTFTVKAAGELKERLEKKINESLKSAESDDLKQFLTQQLVGIQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQK+V QYGYTLGISP FRILQDK+EQD++KN+V+ DLF+DY TG A F
Sbjct: 121 ADIGTMDAFTQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAASF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF+GNRKDS FR+++YK+Y FSQ+ DNP+RW+ FLKGA TY DF AIP+QEV
Sbjct: 181 IKLVKNFSGNRKDSKAFREMVYKVYAFSQSIDNPKRWMQTVFLKGAQTYTDFEAIPDQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
LN +Q TA LRD+TD EDYKQ+TAKG PTA Y++HLK+IE L W F+ LYG+
Sbjct: 241 SSLLNVMQTTANQLRDLTDQEDYKQLTAKGVPTANYKKHLKIIENLVHWSQDFNLLYGKK 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL LA DI +IPSGNDVTVAGVKYP+F+ LH+R+ GLKHLE IFKYQ +SL LL++LQ
Sbjct: 301 GLANLARDITNVIPSGNDVTVAGVKYPIFKQLHNRIVGLKHLEVIFKYQGESLFLLELLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SF LDFS+QYLQ K+QENAFEFSDIAHFAIQILEEN IRQ+Y DKYHEVMVDEYQDNNH
Sbjct: 361 SFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQIYQDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQER+LELLSNG NRFMVGDIKQSIYRFRQADPQIFN K+K +Q++P GKLI+LKENFR
Sbjct: 421 TQERILELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKYKAYQDNPSQGKLIILKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLD+TNSVFTHLMDE VG+ILYD++HQL AGS Q+ +P N+TQVL+ DT +
Sbjct: 481 SQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDI 540
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
D + IS E KLVAKEIIRLH EE V F+DITLLVSSRTRNDGILQTFD YGI
Sbjct: 541 DDSDSQ--QYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGILQTFDRYGI 598
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF F+EDDL R+A+ ++
Sbjct: 599 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLTRIAIHDV 658
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
K Y K++ + + +G LIT LS+K+D F +TF +WR+F+ +SLYDLIWKI
Sbjct: 659 ----KMAFYHKVKLSYHKEGHHSDLITPELSSKIDYFMKTFQTWRDFAKWHSLYDLIWKI 714
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YND+FYYDYVG+LPK+EQRQANLYALALRA+ FEKTGFKGLSRFIRMIDK+LEN+NDLAD
Sbjct: 715 YNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENENDLAD 774
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
VEVALP+NAV LMTIHKSKGLEFKYVFILNIDKKFS+ D+TSPLILSR G+GIKY+ADM
Sbjct: 775 VEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVADM 834
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
+ ELEE++LP VKVSM+TLPYQLNKRELRLATLSEQMRLLYVAMTR+EKKLYLVGK SQ
Sbjct: 835 RHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKASQT 894
Query: 901 KLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMG 960
K D YD SENN+LP+A RE ++TFQDWLLA+ Y EL + +F++ E+LT+ +G
Sbjct: 895 KWADHYDLVSENNYLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHHIG 954
Query: 961 SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEP 1020
+ ++ DN +NRQS+DI A+ +LE+VE++NQ YKAAI LPTVRTPSQ+KKFYEP
Sbjct: 955 MVNPSLPFNPDNKAENRQSEDIVHAISVLESVEQINQTYKAAIELPTVRTPSQVKKFYEP 1014
Query: 1021 VMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
+++ EGV+VM+T +T F+LP FS KQDP ALGS+VHELMQR+ +S V +EDI
Sbjct: 1015 ILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDIQK 1074
Query: 1081 ALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV 1140
AL E++ E ++K AIQ++KI +FFQ + LGK IQ + ++REAPFAML+ DP SGE +V
Sbjct: 1075 ALTEVNAETSIKAAIQIEKINYFFQENSLGKYIQEEVEHLHREAPFAMLKEDPESGEKFV 1134
Query: 1141 VRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLI 1200
VRGIIDGY+L +NRI+LFDYKTDKF N +KERY+GQM LYA+AL +SY I+++D YLI
Sbjct: 1135 VRGIIDGYLLLENRIILFDYKTDKFVNPLELKERYQGQMALYAEALKKSYEIERIDKYLI 1194
Query: 1201 LLGGEKLEVVEI 1212
LLGG++LEVV++
Sbjct: 1195 LLGGKQLEVVKM 1206
>gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
Length = 1222
Score = 1400 bits (3623), Expect = 0.0, Method: Composition-based stats.
Identities = 735/1213 (60%), Positives = 930/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKYLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K + D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
Length = 1222
Score = 1399 bits (3621), Expect = 0.0, Method: Composition-based stats.
Identities = 735/1213 (60%), Positives = 928/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF ++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG+ LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDALYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K D D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQDITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEVSHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL ++ E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIASNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG E+VE+
Sbjct: 1210 VLMGGGNPEIVEV 1222
>gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
MGAS315]
gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
MGAS315]
Length = 1222
Score = 1398 bits (3618), Expect = 0.0, Method: Composition-based stats.
Identities = 735/1213 (60%), Positives = 928/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPAF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+KM+ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKMQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K + D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
Length = 1222
Score = 1397 bits (3615), Expect = 0.0, Method: Composition-based stats.
Identities = 733/1213 (60%), Positives = 929/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQ +LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQGVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGN VTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNYVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K + D K + LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQEITDPKKLDKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
Length = 1222
Score = 1397 bits (3615), Expect = 0.0, Method: Composition-based stats.
Identities = 734/1213 (60%), Positives = 928/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLGQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDI HFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ Y
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYS 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K D D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQDITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKK K + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL E+ E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALREIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
str. Manfredo]
gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
str. Manfredo]
Length = 1210
Score = 1396 bits (3614), Expect = 0.0, Method: Composition-based stats.
Identities = 735/1213 (60%), Positives = 929/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 2 ISFAPFLSPEAIKHLQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 61
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 62 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 121
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 122 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 181
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 182 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 241
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 242 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 301
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 302 GLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 361
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 362 DFVLVFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 421
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 422 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 481
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++ YD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 482 SQSEVLNVSNAVFSHLMDESVGDVSYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 541
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 542 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 597
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 598 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 657
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 658 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 717
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 718 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 777
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 778 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 837
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 838 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 897
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K D D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 898 SKSQDITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 957
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 958 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYE 1017
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1018 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1077
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1078 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1137
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1138 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1197
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1198 VLMGGGKPEIVEV 1210
>gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
Length = 1222
Score = 1395 bits (3612), Expect = 0.0, Method: Composition-based stats.
Identities = 733/1213 (60%), Positives = 927/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLGQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDI HFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ E GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKTEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL FI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K D D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQDITDPKKLGKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKK K + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL E+ E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALREIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
Length = 1222
Score = 1393 bits (3606), Expect = 0.0, Method: Composition-based stats.
Identities = 732/1213 (60%), Positives = 927/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E D+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF ++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ LL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFSLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVATPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSE+MRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K + D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
MGAS8232]
gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
MGAS8232]
Length = 1222
Score = 1392 bits (3602), Expect = 0.0, Method: Composition-based stats.
Identities = 734/1213 (60%), Positives = 927/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKYLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ E GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKTEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG+ LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDALYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+
Sbjct: 850 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASK 909
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K D D K L +A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 910 SKSQDITDPKKLGKLLSLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 969
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 970 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKVTYE 1029
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1030 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1089
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1090 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1150 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1209
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1210 VLMGGGKPEIVEV 1222
>gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
M1 GAS]
gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
M1 GAS]
Length = 1210
Score = 1391 bits (3600), Expect = 0.0, Method: Composition-based stats.
Identities = 731/1213 (60%), Positives = 926/1213 (76%), Gaps = 5/1213 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E D+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 2 ISFAPFLSPEAIKHLQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 61
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 62 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 121
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF ++ +A +F
Sbjct: 122 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQKEAPVF 181
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 182 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 241
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 242 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 301
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ LL+ LQ
Sbjct: 302 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFSLLEQLQ 361
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 362 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 421
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLKENFR
Sbjct: 422 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLKENFR 481
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 482 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 541
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 542 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 597
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+ TDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 598 IPIATDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 657
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 658 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWK 717
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE QNDLA
Sbjct: 718 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLA 777
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 778 DVEVATPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 837
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+K L E L +VKVSM+TLPYQLNK+ELRLATLSE+MRLLYVAMTR+EKK+Y +GK S+
Sbjct: 838 IKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASK 897
Query: 900 EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKM 959
K + D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +
Sbjct: 898 SKSQEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESV 957
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YE
Sbjct: 958 GRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYE 1017
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
P++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++ + +L
Sbjct: 1018 PLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLL 1077
Query: 1080 TALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY 1139
AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S E+Y
Sbjct: 1078 DALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEY 1137
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
V+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL
Sbjct: 1138 VLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYL 1197
Query: 1200 ILLGGEKLEVVEI 1212
+L+GG K E+VE+
Sbjct: 1198 VLMGGGKPEIVEV 1210
>gi|28896252|ref|NP_802602.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
SSI-1]
gi|28811503|dbj|BAC64435.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
SSI-1]
Length = 1153
Score = 1330 bits (3441), Expect = 0.0, Method: Composition-based stats.
Identities = 697/1157 (60%), Positives = 884/1157 (76%), Gaps = 5/1157 (0%)
Query: 57 MIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLL 116
M+ERI+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL
Sbjct: 1 MVERILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQ 60
Query: 117 GLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQ 176
L ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +
Sbjct: 61 SLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 120
Query: 177 AELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIP 236
A F LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP
Sbjct: 121 APAFRALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIP 180
Query: 237 EQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSL 296
+ +++ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F L
Sbjct: 181 DHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCL 240
Query: 297 YGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLL 356
YG+ GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL
Sbjct: 241 YGKAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLL 300
Query: 357 QVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQ 416
+ LQ F FS+ YL K+QE+AFEFSDIAHFAI+ILEEN IRQ Y YHEVMVDEYQ
Sbjct: 301 EQLQDFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDIRQSYQQHYHEVMVDEYQ 360
Query: 417 DNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLK 476
DNNH QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE GK+ILLK
Sbjct: 361 DNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQGKVILLK 420
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT- 535
ENFRSQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++
Sbjct: 421 ENFRSQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSD 480
Query: 536 KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTF 595
KD N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF
Sbjct: 481 KDDGN----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTF 536
Query: 596 DDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL 655
+ YGIP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+
Sbjct: 537 NQYGIPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARI 596
Query: 656 ALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYD 715
ALQ + K LY+KM+ A G+G +LI + L KL+ F +T SWR ++ L SLYD
Sbjct: 597 ALQKDNELDKDCLYDKMQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYD 656
Query: 716 LIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQ 775
LIWKI+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL RFI+MIDK+LE Q
Sbjct: 657 LIWKIFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQ 716
Query: 776 NDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIK 835
NDLADVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIK
Sbjct: 717 NDLADVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIK 776
Query: 836 YIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG 895
Y+AD+K L E L +VKVSM+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +G
Sbjct: 777 YLADIKGLLGETTLNSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIG 836
Query: 896 KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLT 955
K S+ K + D K LP+A RE LTFQDWLLAI ++ ++L+F FI D DLT
Sbjct: 837 KASKSKSQEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLT 896
Query: 956 EDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIK 1015
++ +G L+ Q + D+LKDNRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K
Sbjct: 897 QESVGRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLK 956
Query: 1016 KFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSL 1075
YEP++E GV++++ S ++ F LP FSKKAK + + +GS++H+LMQ L LS+ ++
Sbjct: 957 AAYEPLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQ 1016
Query: 1076 EDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS 1135
+ +L AL + E VK A+ + KI FF + LG+ Q +YREAPFA+L+ DP S
Sbjct: 1017 QTLLDALRGIDSNEEVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPIS 1076
Query: 1136 GEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQV 1195
E+YV+RGIID Y LFD+ IVL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y +
Sbjct: 1077 QEEYVLRGIIDAYFLFDDHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVT 1136
Query: 1196 DSYLILLGGEKLEVVEI 1212
YL+L+GG K E+VE+
Sbjct: 1137 KRYLVLMGGGKPEIVEV 1153
>gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus
thermophilus LMD-9]
gi|116101678|gb|ABJ66824.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus
thermophilus LMD-9]
Length = 1217
Score = 1244 bits (3220), Expect = 0.0, Method: Composition-based stats.
Identities = 694/1232 (56%), Positives = 892/1232 (72%), Gaps = 35/1232 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M K FL+ EI QEA SDK +K TPEQIEAIY++GTNILVSASAGSGKTFVM+ER
Sbjct: 1 MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D I RGV IDQLFISTFTVKAAGELKERLEK++T+ L + FLS+Q+ + T
Sbjct: 61 ILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLTKHLGQAETDEERAFLSDQIAKIGT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQKLV QYGY LG+SP FRI+ D +EQ L+KN+V+ DLF DY G A+LF
Sbjct: 121 ADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLVRNF G+ K S FR ++Y IY FSQAT +P++WL +N LKG A PEQ
Sbjct: 181 QKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLRQNLLKG-----QIEAKPEQAK 235
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLK----MIE--------QLQD 288
+ L++L++ LA + L D+ + + A Y ++ ++E ++D
Sbjct: 236 NELLDSLKDGLLA-DFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMED 294
Query: 289 WVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKY 348
+ +L G GL + + + + K L L LE + K+
Sbjct: 295 LLKQLLTLSGGTGLTNMTRPKDEELKAYKE-AYNKTKNEFVAQLREVDTQLTVLEVLAKH 353
Query: 349 QDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYH 408
D LP+L++LQSF LDFS QYLQAK+QEN FEFSDIAHFAI+ILEEN + Y D+YH
Sbjct: 354 NDDILPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPEVAVSYRDRYH 413
Query: 409 EVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE 468
EVMVDEYQDN+HTQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN KF+ F E+P+
Sbjct: 414 EVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFQLFLENPD 473
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET 528
GKLILLKENFRSQSEVLDATN VF+HLMD+ +G+ILYD TH LVAGS QK P+P+NET
Sbjct: 474 AGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENET 533
Query: 529 QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRN 588
+VLIY++ D+ + E IS GE+ LV KEII+LH E+ V+FEDITLL +R
Sbjct: 534 EVLIYNS-DESSTSEDEEGPDQAISSGEISLVIKEIIKLH-EQGVRFEDITLLAPNRNTY 591
Query: 589 DGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
++ +F+++GIPLV D + +YL+S+EVM+MLDTLR+I+NPLNDYALVALLRSPMF F+
Sbjct: 592 LDLMVSFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFNFN 651
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
EDDL R+A+Q K Y+K+ A G +++ + L AKL F ET WR++S
Sbjct: 652 EDDLTRIAVQ----ADKGQFYDKLLAAHTKSGLHPEVVMQGLDAKLTLFTETLADWRDYS 707
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+S+YDLIWKIYND+FYYDYVG LP++EQRQANLYALALRA+ +EKTGFKGLSRFI MI
Sbjct: 708 KCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMI 767
Query: 769 DKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKF---SIQDMTSPLI 825
DKI+ + NDL +V +PKNAV+LMTIHKSKGLEFKYVF+L +++KF S ++ I
Sbjct: 768 DKIIASGNDLEEVTDLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDGLSGKYI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
++R+ G+GIKY+AD+K+++ LP + V ++TL +Q N+RE R A++SE+MRLLYVAMT
Sbjct: 828 INREKGLGIKYLADLKDQINTN-LPKLNVVLETLTFQENRREERRASISEEMRLLYVAMT 886
Query: 886 RSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFK 945
R+EKKLYLVGKGS+E L QY ENN LPVA R+ T+QDW++A++ A+ +L F
Sbjct: 887 RAEKKLYLVGKGSKETLTQQYGTNVENNRLPVAIRDQIATYQDWIMALDTAFMRKDLKFT 946
Query: 946 TSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHL 1005
F+ E+LT + +G +E + A DAD+L +NRQ++DI RAL +LE+VEKLNQ Y AI L
Sbjct: 947 VRFVEAEELTPEAIGQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDL 1006
Query: 1006 PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKP-----KFELPQFSKKAKQDPTALGSSV 1060
P+VRTPSQ+K YEP+M+TEGV++M +P FELP F +K K A+GS+
Sbjct: 1007 PSVRTPSQLKTLYEPIMDTEGVDIMDKKEGVQPLETASTFELPDFGQKTKVTGAAVGSAT 1066
Query: 1061 HELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV 1120
HELMQRL LS++V+L+D+ AL+ +S ++ VK +Q++K+L FF T +LGKLI AN K+
Sbjct: 1067 HELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDT-ELGKLILANRGKL 1125
Query: 1121 YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMT 1180
REAPFAML DPAS ED+VVRGIIDGY+L ++RIVLFDYKTD FT+ +K RY+GQM+
Sbjct: 1126 RREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTHPSELKTRYQGQMS 1185
Query: 1181 LYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
LYA+ALSQ+Y +++VD YLILLGG+ LEVVE+
Sbjct: 1186 LYAKALSQAYQMEKVDKYLILLGGKDLEVVEV 1217
>gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG
18311]
gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG
18311]
Length = 1217
Score = 1239 bits (3205), Expect = 0.0, Method: Composition-based stats.
Identities = 695/1232 (56%), Positives = 891/1232 (72%), Gaps = 35/1232 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M K FL+ EI QEA SDK +K TPEQIEAIY++GTNILVSASAGSGKTFVM+ER
Sbjct: 1 MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D I RGV IDQLFISTFTVKAAGELKERLEK++T+ L + FLS+Q+ + T
Sbjct: 61 ILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLTKHLGQAETDEERAFLSDQIAKIGT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQKLV QYGY LG+SP FRI+ D +EQ L+KN+V+ DLF DY G A+LF
Sbjct: 121 ADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLVRNF G+ K S FR ++Y IY FSQAT +P++WL +N LKG A PEQ
Sbjct: 181 QKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLCQNLLKG-----QIEAKPEQAK 235
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLK----MIE--------QLQD 288
+ L+ L++ LA + L D+ + + A Y ++ ++E ++D
Sbjct: 236 NELLDGLKDGLLA-DFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMED 294
Query: 289 WVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKY 348
+ +L G GL + + + + K L L LE + K+
Sbjct: 295 LLKQLLTLSGGTGLTNMTRPKDEELKAYKE-AYNKTKNEFVAQLREVDTQLTVLEVLTKH 353
Query: 349 QDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYH 408
D LP+L++LQSF LDFS QYLQAK+QEN FEFSDIAHFAI+ILEEN + Y D+YH
Sbjct: 354 NDDILPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPEVAVSYRDRYH 413
Query: 409 EVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE 468
EVMVDEYQDN+HTQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN KF+ F E+P+
Sbjct: 414 EVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFQLFLENPD 473
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET 528
GKLILLKENFRSQSEVLDATN VF+HLMD+ +G+ILYD TH LVAGS QK P+P+NET
Sbjct: 474 AGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENET 533
Query: 529 QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRN 588
+VLIY++ D+ + E IS GE+ LV KEII+LH E+ V+FEDITLL +R
Sbjct: 534 EVLIYNS-DESSTSEDEEGPDQAISSGEISLVIKEIIKLH-EQGVRFEDITLLAPNRNTY 591
Query: 589 DGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
++ +F+++GIPLV D + +YL+S+EVM+MLDTLR+I+NPLNDYALVALLRSPMF F+
Sbjct: 592 LDLMVSFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFNFN 651
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
EDDL R+A+Q K Y+K+ A G +++ + L AKL F ET WR++S
Sbjct: 652 EDDLTRIAVQ----ADKGQFYDKLLAAHTKSGLHPEVVMQGLEAKLTLFTETLADWRDYS 707
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+S+YDLIWKIYND+FYYDYVG LP++EQRQANLYALALRA+ +EKTGFKGLSRFI MI
Sbjct: 708 KCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMI 767
Query: 769 DKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKF---SIQDMTSPLI 825
DKI+ + NDL +V +PKNAV+LMTIHKSKGLEFKYVF+L +++KF S ++ I
Sbjct: 768 DKIIASGNDLEEVTDLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDGLSGKYI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
++R+ G+GIKY+AD+K+++ LP + V ++TL +Q N+RE R A++SE+MRLLYVAMT
Sbjct: 828 INREKGLGIKYLADLKDQINTN-LPKLNVVLETLTFQENRREERRASISEEMRLLYVAMT 886
Query: 886 RSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFK 945
R+EKKLYLVGKGS+E L QY ENN LPVA R+ T+QDW++A++ A+ +L F
Sbjct: 887 RAEKKLYLVGKGSKETLTQQYGTDVENNRLPVALRDQIATYQDWIMALDTAFMRKDLKFT 946
Query: 946 TSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHL 1005
F+ DE+LT + +G +E + A DAD+L +NRQ+++I RAL +LE+VEKLN Y AI L
Sbjct: 947 VRFVEDEELTPEAIGQVEVKAAVDADDLSNNRQTEEIERALTVLESVEKLNHLYAPAIDL 1006
Query: 1006 PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKP-----KFELPQFSKKAKQDPTALGSSV 1060
P+VRTPSQ+K FYEP+M+TEGV++M +P FELP F +K K A+GS+
Sbjct: 1007 PSVRTPSQLKTFYEPIMDTEGVDIMDKKEGVQPLETASTFELPDFGQKTKVTGAAVGSAT 1066
Query: 1061 HELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV 1120
HELMQRL LS+ V+L+D+ AL+ +S + VK +Q++K+L FF T +LGKLI AN DK+
Sbjct: 1067 HELMQRLTLSDTVTLQDLTQALSRVSASDQVKARVQLEKLLGFFDT-ELGKLILANRDKL 1125
Query: 1121 YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMT 1180
REAPFAML DPAS ED+VVRGIIDGY+L ++RIVLFDYKTD FT+ +K RY+GQM+
Sbjct: 1126 RREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTHPSELKTRYQGQMS 1185
Query: 1181 LYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
LYA+ALSQ+Y +++VD YLILLGG+ LEVVE+
Sbjct: 1186 LYAKALSQAYQMEKVDKYLILLGGKDLEVVEV 1217
>gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
CNRZ1066]
gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
CNRZ1066]
Length = 1217
Score = 1238 bits (3204), Expect = 0.0, Method: Composition-based stats.
Identities = 695/1232 (56%), Positives = 891/1232 (72%), Gaps = 35/1232 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M K FL+ EI QEA SDK +K TPEQIEAIY++GTNILVSASAGSGKTFVM+ER
Sbjct: 1 MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D I RGV IDQLFISTFTVKAAGELKERLEK++T+ L + FLS+Q+ + T
Sbjct: 61 ILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLTKHLGQAETDEERAFLSDQIAKIGT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQKLV QYGY LG+SP FRI+ D +EQ L+KN+V+ DLF DY G A+LF
Sbjct: 121 ADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLVRNF G+ K S FR ++Y IY FSQAT +P++WL +N LKG A PEQ
Sbjct: 181 QKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLCQNLLKG-----QIEAKPEQAK 235
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLK----MIE--------QLQD 288
+ L+ L++ LA + L D+ + + A Y ++ ++E ++D
Sbjct: 236 NELLDGLKDGLLA-DFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMED 294
Query: 289 WVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKY 348
+ +L G GL + + + + K L L LE + K+
Sbjct: 295 LLKQLLTLSGGTGLTNMTRPKDEELKAYKE-AYNKTKNEFVAQLREVDTQLTVLEVLTKH 353
Query: 349 QDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYH 408
D LP+L++LQSF LDFS QYLQAK+QEN FEFSDIAHFAI+ILEEN + Y D+YH
Sbjct: 354 NDDILPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPEVAVSYRDRYH 413
Query: 409 EVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE 468
EVMVDEYQDN+HTQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN KF+ F E+P+
Sbjct: 414 EVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFQLFLENPD 473
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET 528
GKLILLKENFRSQSEVLDATN VF+HLMD+ +G+ILYD TH LVAGS QK P+P+NET
Sbjct: 474 AGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENET 533
Query: 529 QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRN 588
+VLIY++ D+ + E IS GE+ LV KEII+LH E+ V+FEDITLL +R
Sbjct: 534 EVLIYNS-DESSTSEDEEGPDQAISSGEISLVIKEIIKLH-EQGVRFEDITLLAPNRNTY 591
Query: 589 DGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
++ +F+++GIPLV D + +YL+S+EVM+MLDTLR+I+NPLNDYALVALLRSPMF F+
Sbjct: 592 LDLMVSFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFNFN 651
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
EDDL R+A+Q K Y+K+ A G +++ + L AKL F ET WR++S
Sbjct: 652 EDDLTRIAVQ----ADKGQFYDKLLAAHTKSGLHPEVVMQGLEAKLTLFTETLADWRDYS 707
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+S+YDLIWKIYND+FYYDYVG LP++EQRQANLYALALRA+ +EKTGFKGLSRFI MI
Sbjct: 708 KCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMI 767
Query: 769 DKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKF---SIQDMTSPLI 825
DKI+ + NDL +V +PKNAV+LMTIHKSKGLEFKYVF+L +++KF S ++ I
Sbjct: 768 DKIIASGNDLEEVTDLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDGLSGKYI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
++R+ G+GIKY+AD+K+++ LP + V ++TL +Q N+RE R A++SE+MRLLYVAMT
Sbjct: 828 INREKGLGIKYLADLKDQINTN-LPKLNVVLETLTFQDNRREERRASISEEMRLLYVAMT 886
Query: 886 RSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFK 945
R+EKKLYLVGKGS+E L QY ENN LPVA R+ T+QDW++A++ A+ +L F
Sbjct: 887 RAEKKLYLVGKGSKETLTQQYGTDVENNRLPVALRDQIATYQDWIMALDTAFMRKDLKFT 946
Query: 946 TSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHL 1005
F+ DE+LT + +G +E + A DAD+L +NRQ+++I RAL +LE+VEKLN Y AI L
Sbjct: 947 VRFVEDEELTPEAIGQVEVKAAVDADDLSNNRQTEEIERALTVLESVEKLNHLYAPAIDL 1006
Query: 1006 PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKP-----KFELPQFSKKAKQDPTALGSSV 1060
P+VRTPSQ+K FYEP+M+TEGV++M +P FELP F +K K A+GS+
Sbjct: 1007 PSVRTPSQLKTFYEPIMDTEGVDIMDKKEGVQPLETASTFELPDFGQKTKVTGAAVGSAT 1066
Query: 1061 HELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV 1120
HELMQRL LS+ V+L+D+ AL+ +S + VK +Q++K+L FF T +LGKLI AN DK+
Sbjct: 1067 HELMQRLTLSDTVTLQDLTQALSRVSASDQVKARVQLEKLLGFFDT-ELGKLILANRDKL 1125
Query: 1121 YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMT 1180
REAPFAML DPAS ED+VVRGIIDGY+L ++RIVLFDYKTD FT+ +K RY+GQM+
Sbjct: 1126 RREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTHPSELKTRYQGQMS 1185
Query: 1181 LYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
LYA+ALSQ+Y +++VD YLILLGG+ LEVVE+
Sbjct: 1186 LYAKALSQAYQMEKVDKYLILLGGKDLEVVEV 1217
>gi|125718261|ref|YP_001035394.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
Length = 1224
Score = 1229 bits (3181), Expect = 0.0, Method: Composition-based stats.
Identities = 680/1225 (55%), Positives = 894/1225 (72%), Gaps = 23/1225 (1%)
Query: 5 PFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDK 64
PFLT +EIA Q QEA SDK QK+T EQIEAIY+SG NILVSASAGSGKTFVM++RI+D+
Sbjct: 5 PFLTAEEIALKQAQEAASDKPQKKTAEQIEAIYSSGRNILVSASAGSGKTFVMVQRIIDQ 64
Query: 65 ILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIG 124
ILRGV + QLFISTFTVKAAGELKERLEK++ + L+ LKQ L++QL L ADIG
Sbjct: 65 ILRGVAVSQLFISTFTVKAAGELKERLEKELGQALKEAESPELKQHLAQQLADLPNADIG 124
Query: 125 TMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLV 184
TMD+FTQK++++YGY LG++PNFRILQ SEQ +L+N+VF +F Y ++ LF++LV
Sbjct: 125 TMDSFTQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDHYYDSERQALFSRLV 184
Query: 185 RNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQ------ 238
+NF G RKD S FR+ +Y+IY F Q+T +PQRWL E FL G + DF+A E+
Sbjct: 185 KNFTGKRKDLSAFREQVYRIYSFLQSTSSPQRWLEETFLYGYE-HSDFAAERERIFCQIK 243
Query: 239 ----EVKDFLNTLQETA----LALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWV 290
E++ F + E + +++D V A +++ + ++++Q+
Sbjct: 244 SALWELETFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNESSSIEETAQILKQIVALS 303
Query: 291 LHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQD 350
+ +GK A+++ + D A + P+ L S + L L+ I ++QD
Sbjct: 304 QLSNGQAFTARVGKNADELKKEM--AKDYNEA--RKPMIERLRSFDQQLYQLDFIEQHQD 359
Query: 351 QSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEV 410
+ LPL+++L+ F DF++ YL+ K ENAFEF DI+HFAI+ILE +R+ Y ++YHEV
Sbjct: 360 ECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEV 419
Query: 411 MVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHG 470
MVDEYQD NHTQERML+LLS G+NRFMVGDIKQSIYRFRQADPQIF+ KFK +QE G
Sbjct: 420 MVDEYQDTNHTQERMLDLLSRGKNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQEDSSQG 479
Query: 471 KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530
KLI+LKENFRS EVL+ATN VF LMDE VGEI Y++TH LVAG+ A++ P P N
Sbjct: 480 KLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASF 539
Query: 531 LIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDG 590
LIY+ + ++ A E +S GEV LV KEIIRLHNEE V F+DITLL +SRTRND
Sbjct: 540 LIYEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDL 599
Query: 591 ILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDED 650
IL F+ + IPLV D G NYL+SVEV+VMLDTLR+I+NPLNDYAL ALL+SPMF F ED
Sbjct: 600 ILAAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGED 659
Query: 651 DLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL 710
+LARL+LQ ++ ++NLYEK+ NA G+G L+TE L KL F+ET SWR +S
Sbjct: 660 ELARLSLQASQERSQENLYEKLVNALEGRGLNPALVTEELQKKLQHFYETLQSWRTYSKT 719
Query: 711 NSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
+SLYDLIWKIY D+FYYD VG+L QRQANLYAL+LRA+ +EK+ FKGLSRFI MID+
Sbjct: 720 HSLYDLIWKIYQDRFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDR 779
Query: 771 ILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQN 830
ILENQ+DLA V VA PK+AV LMTIHKSKGLEFKYVF+LN+DK F+ QD +S +ILSR
Sbjct: 780 ILENQHDLASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839
Query: 831 GVGIKYIADMKEELEEKLLPT-VKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
GVGIKY+AD+ +++ P +++SMDTLPYQ N EL+LA+LSEQMRLLYVAMTR+E
Sbjct: 840 GVGIKYVADVSVSVKDSYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899
Query: 890 KLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFI 949
KLYLVGKGSQE L + GKS+ L + R FQDWL AI+ ++ + L ++T F+
Sbjct: 900 KLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQISNFQDWLYAIQDVFSDENLAYETRFV 959
Query: 950 TDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVR 1009
TDE+LT +++G + + AD+L DNRQSDDI RALD+LE+V++LN Y++AI LP+VR
Sbjct: 960 TDEELTAEEIGRINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019
Query: 1010 TPSQIKKFYEPVMETEGVEVM--QTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRL 1067
TPSQIKKFYEP+M+T+G+++M + +++ +P FELP F KKAK +GS+VHELMQR+
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRI 1079
Query: 1068 HLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFA 1127
L S+ + +ALA++ ++ VKK IQ+ KI FF+T LG+L+ N+D+V REAPFA
Sbjct: 1080 PLDSSPSMAVLRSALAQVQADDAVKKQIQLSKIASFFETD-LGRLLIENSDRVRREAPFA 1138
Query: 1128 MLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALS 1187
ML+ D ASG+++V+RGI+DGY+LF++RI+LFDYKTDK+ +S + RYRGQ+ LYAQALS
Sbjct: 1139 MLKRDEASGQEFVLRGILDGYLLFEDRIILFDYKTDKYKDSSELIARYRGQLDLYAQALS 1198
Query: 1188 QSYNIQQVDSYLILLGGEKLEVVEI 1212
+SY I Q++ YLILLGGE+L+VV++
Sbjct: 1199 RSYGISQIEKYLILLGGEQLQVVKV 1223
>gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus suis
05ZYH33]
gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus suis
98HAH33]
gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus suis
05ZYH33]
gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Streptococcus suis
98HAH33]
Length = 1227
Score = 1229 bits (3181), Expect = 0.0, Method: Composition-based stats.
Identities = 688/1234 (55%), Positives = 895/1234 (72%), Gaps = 42/1234 (3%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M F+ FL+ +EI ++Q+ EA SDK+QKRT EQIEAIYT G N+LVSASAGSGKTFVM++R
Sbjct: 12 MAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVLVSASAGSGKTFVMVQR 71
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+ RG+ IDQLFISTFTVKAAGELKER+EKK+ E + T D L++ LS QL L
Sbjct: 72 ILDKLKRGIGIDQLFISTFTVKAAGELKERIEKKLNETIAETTDMELRRHLSAQLADLTK 131
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMD+FTQKLVT YGY+LGISP FRILQD++E+ LK +VFD LF DY D+ F
Sbjct: 132 ADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDENGAF 191
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKD--FSAIPEQ 238
KLVRNF+GNRKD+S FRQ++Y+++DFSQ+T +P +WL E ++ A+ Y + EQ
Sbjct: 192 RKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQ-ADLYSQERIEQMLEQ 250
Query: 239 EVKD-FLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLY 297
K+ L+ L + A + ++ G ++ +E++ D + DSL
Sbjct: 251 GFKEKVLDKLYQAA---------DFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLD 301
Query: 298 GRDGLGKLANDIATLI--------------PSGNDVTVAGVKYPVFRS-LHSRLRGLKH- 341
+D + ++ + LI P + +Y +S + S LR L
Sbjct: 302 QKDLMERVERIL--LINNQSRGKGLTNANRPKDEHLIAFKEEYNAGKSQIISELRDLGQE 359
Query: 342 ---LETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA 398
L + YQ Q+LPLL +L+ F LDFS+ YL K++E AFEF DI HFAI+ILEEN
Sbjct: 360 VYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAIRILEENAD 419
Query: 399 IRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQ 458
IRQ + +KYHEVMVDEYQDNNH+QERML+LLSNG NRFMVGDIKQSIYRFRQADP IF +
Sbjct: 420 IRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQE 479
Query: 459 KFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSA 518
KF+ +Q +P+ GKLILLKENFRSQ EVL+ATN++FT LMD VGEI YDDTH LVAGS
Sbjct: 480 KFELYQANPQSGKLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPG 539
Query: 519 QKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDI 578
QKI P+NE + LIYD +D N E+++ ++ GE+++VAKEIIRLHNEE F+DI
Sbjct: 540 QKIAQPKNEMEYLIYDQQDSANSSTDAEEET-PLTAGEIEVVAKEIIRLHNEEGADFKDI 598
Query: 579 TLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVA 638
TLLV RT ND I+ F+ +GIP+V DGG +YL+S+EVM+MLDTLR I+NPLNDYALVA
Sbjct: 599 TLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVA 658
Query: 639 LLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFF 698
LL+SPMF FDED+L R++LQ Y+KME A+ GQ +L++E L K+ F
Sbjct: 659 LLKSPMFRFDEDELTRISLQ----AGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFL 714
Query: 699 ETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGF 758
+WR ++ L+S+YD+IWK++N+KFYYDYVG+LP +RQANLYAL LRA+ FEKTG+
Sbjct: 715 SILENWRAYAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGY 774
Query: 759 KGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ 818
KGLSRFI MID+ L N DLADV+ LP+NAV LMTIHKSKGLEFKYVF++NIDK+F+++
Sbjct: 775 KGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLE 834
Query: 819 DMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMR 878
D +I+SR+NG+GI+Y+ADMK+++ LP V+V M+TLPYQ N +EL++A LSEQMR
Sbjct: 835 DHYQSVIISRKNGLGIQYLADMKDKVNSP-LPQVRVLMNTLPYQNNLQELKIANLSEQMR 893
Query: 879 LLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYA 938
LLYVA+TR+EKKLYLVGKG+ +KL ++YDGK EN L + RE TFQDW+LAI+ A++
Sbjct: 894 LLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFS 953
Query: 939 ADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQH 998
++LHFK F+TDEDLTE+K+G L + + +LKD RQS+DI +ALD L +V++LN+
Sbjct: 954 GEDLHFKKVFVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNER 1013
Query: 999 YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGS 1058
YKAAI LP++RTPSQIKK YEP++E EG+EVM+ YQ K F LP FSKK K +GS
Sbjct: 1014 YKAAIELPSLRTPSQIKKLYEPILEQEGMEVME-KYQPKRTFNLPDFSKKPKITGAQVGS 1072
Query: 1059 SVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANAD 1118
+VHELMQRL LS V+ + + AL + E+ +K I V IL FF T LG+ I AN D
Sbjct: 1073 AVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTD-LGREILANTD 1131
Query: 1119 KVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQ 1178
K++REAPFA LQ D S E++V+RGIIDGY+L+D+ IVLFDYKTDK+ + +RY+ Q
Sbjct: 1132 KLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQ 1191
Query: 1179 MTLYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
M LYA+AL ++Y I +VD +LILLGGE++EVVE+
Sbjct: 1192 MQLYAEALKKAYKIDRVDCHLILLGGERIEVVEV 1225
>gi|81096611|ref|ZP_00874949.1| UvrD/REP helicase [Streptococcus suis 89/1591]
gi|80977337|gb|EAP40882.1| UvrD/REP helicase [Streptococcus suis 89/1591]
Length = 1217
Score = 1215 bits (3144), Expect = 0.0, Method: Composition-based stats.
Identities = 684/1232 (55%), Positives = 888/1232 (72%), Gaps = 38/1232 (3%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M F+ FL+ +EI ++Q+ EA SDK+QKRTPEQIEAIYT G N+LVSASAGSGKTFVM++R
Sbjct: 1 MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQR 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+ RGV IDQLFISTFTVKAAGELKER+EK + E + T D L++ LS QL L
Sbjct: 61 ILDKLKRGVGIDQLFISTFTVKAAGELKERIEKNLNETIAETMDMDLRRHLSAQLADLTK 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMD+FTQKLVT YGY+LGISP FRILQD++E+ LK +VFD LF DY D+ F
Sbjct: 121 ADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEQDENGAF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKD--FSAIPEQ 238
KLVRNF+GNRKD+ FRQ++Y+++DFSQ+T +P +WL E ++ A+ Y I EQ
Sbjct: 181 RKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQAVQ-ADLYSQERIELILEQ 239
Query: 239 EVKD-FLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLY 297
K+ L+ L + A + ++ G ++ +E++ D + DSL
Sbjct: 240 GFKEKVLDKLYQAA---------DFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLD 290
Query: 298 GRDGLGK-----LANDIA-------TLIPSGNDVTVAGVKYPVFRS-LHSRLRGLKH--- 341
+D + + L ND + P + +Y +S + S LR L
Sbjct: 291 QKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFKEEYNAGKSQIISGLRDLGQEVY 350
Query: 342 -LETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR 400
L + YQ Q+LP+L +L+ F LDFS+ YL K++E AFEF DI HFAI+ILEEN IR
Sbjct: 351 ELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAIRILEENVDIR 410
Query: 401 QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKF 460
Q + +KYHEVMVDEYQDNNH+QERML+LLSNG NRFMVGDIKQSIYRFRQADP IF +KF
Sbjct: 411 QFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKF 470
Query: 461 KDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQK 520
+ +Q + GKLILLKENFRSQ EVL+ATN++FT LMD VGEI YD+TH LVAGS QK
Sbjct: 471 ELYQADSQAGKLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQK 530
Query: 521 IPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITL 580
I P++E + LIYD +D N E+++ ++ GE+++VAKEIIRLHNEE F+DITL
Sbjct: 531 IAQPKHEMEYLIYDQQDSANSSTDAEEET-PLTAGEIEVVAKEIIRLHNEEGADFKDITL 589
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
LV RT ND I+ F+ +GIP+V DGG +YL+S+EVM+MLDTLR I+NPLNDYALVALL
Sbjct: 590 LVQKRTHNDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALL 649
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
+SPMF FDED+L R++LQ Y+KME A+ GQ +L++ L K+ F
Sbjct: 650 KSPMFRFDEDELTRISLQ----AGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSI 705
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
+WR F+ ++S+YDLIWKI+N+KFYYDYVG+LP +RQANLYAL LRA+ FEKTG+KG
Sbjct: 706 LENWRAFAKMHSIYDLIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKG 765
Query: 761 LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
LSRFI MID+ L N DLADV+ LP+NAV LMTIHKSKGLEFKYVF++NIDK+F+++D
Sbjct: 766 LSRFIVMIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDH 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+I+SR+NG+GI+Y+ADMK+++ LP V+V M+TLPYQ N +EL++A LSEQMRLL
Sbjct: 826 YQSVIISRKNGLGIQYLADMKDKVNSP-LPQVRVLMNTLPYQDNLQELKIANLSEQMRLL 884
Query: 881 YVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAAD 940
YVA+TR+EKKLYLVGKG+ +KL +YDGK + L + RE TFQDW+LAI+ A++ +
Sbjct: 885 YVALTRAEKKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGE 944
Query: 941 ELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYK 1000
+LHFK F+TDEDLTE+K+G L + + +LKD RQS+DI +ALD L +V++LN+ YK
Sbjct: 945 DLHFKKVFVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYK 1004
Query: 1001 AAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSV 1060
AI LP++RTPSQIKK YEP++E EG+EVM+ YQ K F LP FSKK K +GS+V
Sbjct: 1005 VAIELPSLRTPSQIKKLYEPILEQEGMEVME-KYQPKRTFNLPDFSKKPKITGAQVGSAV 1063
Query: 1061 HELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKV 1120
HELMQRL LS V+ + + AL + E+ +K I V IL FF T LG+ I AN DK+
Sbjct: 1064 HELMQRLDLSWLVTEDTVREALEAVHAEQAIKDKINVQMILDFFDTD-LGREILANTDKL 1122
Query: 1121 YREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMT 1180
+REAPFA LQ D S E++V+RGIIDGY+L+D+ IVLFDYKTDK+ + +RY+ QM
Sbjct: 1123 HREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQ 1182
Query: 1181 LYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
LYA+AL ++Y I +VD +LILLGGE++EVVE+
Sbjct: 1183 LYAEALKKAYKIDRVDCHLILLGGERIEVVEV 1214
>gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str.
Challis substr. CH1]
Length = 1216
Score = 1211 bits (3133), Expect = 0.0, Method: Composition-based stats.
Identities = 692/1235 (56%), Positives = 892/1235 (72%), Gaps = 43/1235 (3%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M K FL+ +EI+ LQ EA S K+QKRT EQIEAIY+SG NILVSASAGSGKTFVM++R
Sbjct: 1 MRKKSFLSPEEISQLQHFEATSSKEQKRTAEQIEAIYSSGQNILVSASAGSGKTFVMVQR 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D+ILRGV+I +LFISTFTVKAAGELKERLEK++++ L+ + D LKQ L++QL + T
Sbjct: 61 IIDQILRGVSIQELFISTFTVKAAGELKERLEKELSKVLKESQDEELKQHLAKQLAAIAT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMD+FTQKL+ +YGY LG++PNFRILQ SEQ +L+N+VF LF Y TG+Q E+F
Sbjct: 121 ADIGTMDSFTQKLLNKYGYLLGLAPNFRILQSASEQTMLQNEVFQQLFEQYYTGEQKEIF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF G +K+ S FRQ +Y IY F Q+T NPQRWL + FLKG DFS
Sbjct: 181 EKLVKNFTGKKKNISGFRQQVYAIYQFLQSTSNPQRWLQDFFLKGYEE-TDFS------- 232
Query: 241 KDFLNTLQETALALRDVTDLEDYKQV----TAKGTPTAAYQRHLKMIEQLQDWVLHFDSL 296
++ LQ+ AL DLEDY + + A YQ ++ + D + L
Sbjct: 233 RERDKILQQVKGAL---FDLEDYFRFHLDNEGREFAGAKYQENVLLA---LDKLGSLQEL 286
Query: 297 YGRDGLGKLANDIATLI-PSGNDVTVAGVKYPVFRSLH-----------SRLRGLK---- 340
++ D+ L SG + + L LRGL+
Sbjct: 287 SSEQDYFRVLKDVVLLSRASGGRALTITTRKEELKELADTFNQGRKERIEHLRGLESSIY 346
Query: 341 HLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIR 400
E + KYQD SLPLL +L+ F DF++ YL+ K ENAFEF DI+HFAIQILE+ +R
Sbjct: 347 QFEFLEKYQDDSLPLLDLLRDFMSDFTQTYLERKKTENAFEFGDISHFAIQILEDFPQVR 406
Query: 401 QLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKF 460
Y ++YHEVMVDEYQD NHTQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN KF
Sbjct: 407 SFYQERYHEVMVDEYQDTNHTQERMLELLSNGYNRFMVGDIKQSIYRFRQADPQIFNDKF 466
Query: 461 KDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQK 520
+ +Q P GKLI+LKENFRS EVL+ATN VF LMDE VGEI YD+TH LVAG+ +
Sbjct: 467 RLYQADPSQGKLIVLKENFRSHVEVLEATNDVFKRLMDEQVGEINYDETHYLVAGNPTKA 526
Query: 521 IPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITL 580
P P+N + L+YD+ + + GEV LV KEIIRLH EE V F+DITL
Sbjct: 527 SPDPKNRAEFLLYDSTVASEELSEESISA-----GEVSLVIKEIIRLHEEEAVAFKDITL 581
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
L +SRTRND IL F + IPLV DGGE NYL+SVEVMVMLDTLR+I+NPLNDYAL ALL
Sbjct: 582 LTASRTRNDIILAEFAKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTALL 641
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
+S MF F ED+LAR+ALQ ++ ++NLYEK+ENA QG LI KL+ F +T
Sbjct: 642 KSAMFDFGEDELARIALQKSQEKSQENLYEKLENALTNQGLHPDLILPDHKKKLELFQKT 701
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
LSWR F+ +SLYDLIWKIY D+FYY+YVG+LP QRQANLYAL+LRA+++EK+ FKG
Sbjct: 702 LLSWRTFAKTHSLYDLIWKIYQDRFYYEYVGALPNGAQRQANLYALSLRANDYEKSSFKG 761
Query: 761 LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
LSRFI MIDKILENQ+DLA V A P++AV LMT+HKSKGLEFKYVF+LN+DK F+ QD
Sbjct: 762 LSRFISMIDKILENQHDLASVPYAAPQDAVHLMTVHKSKGLEFKYVFLLNMDKAFNRQDT 821
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRL 879
+S +ILSR+NG+GIKYIAD++ E EK+ P ++++SMDTLPYQ N E++LA+LSEQMRL
Sbjct: 822 SSSIILSRKNGIGIKYIADVEVEYPEKVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMRL 881
Query: 880 LYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAA 939
LYVAMTR+E KLYLVGKGSQEKL + G++E L + R +FQDWL AI+ ++
Sbjct: 882 LYVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQTTSFQDWLYAIQTVFSE 941
Query: 940 DELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHY 999
D+L F F+ DEDLT DK+G + +DAD+L DNRQS+DI RALD+LE+V++LN Y
Sbjct: 942 DQLAFDLRFVRDEDLTADKIGQIHHSNPFDADDLTDNRQSEDIGRALDILESVDRLNSQY 1001
Query: 1000 KAAIHLPTVRTPSQIKKFYEPVMETEGVEVM--QTSYQTKPKFELPQFSKKAKQDPTALG 1057
++AI LP+VRTPSQIKKFYEP+M+TEG++++ + +++ +P F+LP FS+KAK +G
Sbjct: 1002 RSAIELPSVRTPSQIKKFYEPIMDTEGMDIIDERVAFRPQPNFDLPDFSRKAKVTGAQVG 1061
Query: 1058 SSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANA 1117
S+VHELMQR+ + ++ + + +L ++ EE+VKK I ++KI FF+T +LG+++ AN+
Sbjct: 1062 SAVHELMQRIPIDQKPDMAVLKLSLKQVQAEESVKKQIDLNKIASFFET-RLGEILLANS 1120
Query: 1118 DKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRG 1177
DK++REAPFAM + D SG+D+V+RGI+DGY+LF++RI+LFDYKTDK+ + + RY
Sbjct: 1121 DKLHREAPFAMFKRDEISGQDFVLRGILDGYLLFEDRIILFDYKTDKYKEASELIARYHS 1180
Query: 1178 QMTLYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
Q+ LYAQALS+SY I Q++ YLILLGGE+L+VV++
Sbjct: 1181 QLDLYAQALSRSYGISQIEKYLILLGGEQLQVVQV 1215
>gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
Length = 1421
Score = 1120 bits (2896), Expect = 0.0, Method: Composition-based stats.
Identities = 650/1230 (52%), Positives = 849/1230 (69%), Gaps = 32/1230 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 206 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMVER 265
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 266 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 325
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 326 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKESF 385
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NF G KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 386 SHLLKNFVGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 444
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGR 299
+ L + R D + AK AAY ++++I +++ FDS +
Sbjct: 445 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQ 498
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQ 349
L ++ + +G +T A K + ++ ++L L I YQ
Sbjct: 499 AVLARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQ 556
Query: 350 DQ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID 405
++ + L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +
Sbjct: 557 ERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQE 616
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
++HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + +
Sbjct: 617 RFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQ 676
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+P+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P
Sbjct: 677 NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPNPD 735
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSR 585
N+ + L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR
Sbjct: 736 NKAEFLLYDKDDTGEEE---ESQTGTKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSR 792
Query: 586 TRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
+RND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF
Sbjct: 793 SRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMF 852
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
FDED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR
Sbjct: 853 GFDEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWR 912
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
++ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFI
Sbjct: 913 LYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFI 972
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
RMID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +I
Sbjct: 973 RMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVI 1032
Query: 826 LSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
LSRQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAM
Sbjct: 1033 LSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAM 1092
Query: 885 TRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHF 944
TR+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 1093 TRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNF 1152
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIH 1004
FI ++ LT + +G LE + + DNRQSD I AL ML+ VE N ++AAI
Sbjct: 1153 SYRFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALKMLKEVEVYNTLHRAAIE 1212
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHE 1062
LP+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HE
Sbjct: 1213 LPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHE 1272
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
LMQR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YR
Sbjct: 1273 LMQRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYR 1331
Query: 1123 EAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLY 1182
E PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY
Sbjct: 1332 EQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALY 1391
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1392 EEALSRAYSIENIEKYLILLGKDEVQVVKV 1421
>gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
Length = 1216
Score = 1115 bits (2885), Expect = 0.0, Method: Composition-based stats.
Identities = 651/1230 (52%), Positives = 851/1230 (69%), Gaps = 32/1230 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKESF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGR 299
+ L + R D + AK AAY ++++I +++ FDS +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQ 293
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQ 349
L ++ + +G +T A K + ++ ++L L I YQ
Sbjct: 294 AVLARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQ 351
Query: 350 DQ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID 405
++ + L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +
Sbjct: 352 ERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQE 411
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
++HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + +
Sbjct: 412 RFHEVMVDEYQDINHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQ 471
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+P+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P
Sbjct: 472 NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFANT-KLTPNPD 530
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSR 585
N+ + L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR
Sbjct: 531 NKAEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSR 587
Query: 586 TRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
RND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF
Sbjct: 588 NRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMF 647
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
FDED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR
Sbjct: 648 GFDEDELARLSLQKAEDKAHENLYEKLVNAQKKASSQKGLIHTALAEKLKQFMDILASWR 707
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
++ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFI
Sbjct: 708 LYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFI 767
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
RMID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +I
Sbjct: 768 RMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
LSRQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAM
Sbjct: 828 LSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAM 887
Query: 885 TRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHF 944
TR+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 888 TRAEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNF 947
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIH 1004
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI
Sbjct: 948 SYRFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIE 1007
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHE 1062
LP+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HE
Sbjct: 1008 LPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHE 1067
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
LMQR+ LS+Q++L + L ++ + V+ I +DKIL FF T+ LG+ I AN D +YR
Sbjct: 1068 LMQRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTA-LGQEIFANTDHLYR 1126
Query: 1123 EAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLY 1182
E PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY
Sbjct: 1127 EQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALY 1186
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1187 EEALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
Length = 1216
Score = 1115 bits (2884), Expect = 0.0, Method: Composition-based stats.
Identities = 651/1230 (52%), Positives = 851/1230 (69%), Gaps = 32/1230 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGR 299
+ L + R D + AK AAY ++++I +++ FDS +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQ 293
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQ 349
L ++ + +G +T A K + ++ ++L L I YQ
Sbjct: 294 AVLARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQ 351
Query: 350 DQ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID 405
++ + L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +
Sbjct: 352 ERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQE 411
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
++HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + +
Sbjct: 412 RFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQ 471
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+P+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P
Sbjct: 472 NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPNPD 530
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSR 585
N+ + L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR
Sbjct: 531 NKAEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSR 587
Query: 586 TRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
+RND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF
Sbjct: 588 SRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMF 647
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
FDED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR
Sbjct: 648 GFDEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWR 707
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
++ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFI
Sbjct: 708 LYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFI 767
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
RMID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +I
Sbjct: 768 RMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
LSRQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAM
Sbjct: 828 LSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAM 887
Query: 885 TRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHF 944
TR+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 888 TRAEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNF 947
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIH 1004
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI
Sbjct: 948 SYRFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIE 1007
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHE 1062
LP+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HE
Sbjct: 1008 LPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHE 1067
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
LMQR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YR
Sbjct: 1068 LMQRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYR 1126
Query: 1123 EAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLY 1182
E PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY
Sbjct: 1127 EQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALY 1186
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1187 EEALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
Length = 1216
Score = 1114 bits (2882), Expect = 0.0, Method: Composition-based stats.
Identities = 651/1230 (52%), Positives = 850/1230 (69%), Gaps = 32/1230 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGR 299
+ L + R D + AK AAY ++++I +++ FDS +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQ 293
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQ 349
L ++ + +G +T A K + ++ ++L L I YQ
Sbjct: 294 AVLARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQ 351
Query: 350 DQ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID 405
++ + L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +
Sbjct: 352 ERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQE 411
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
++HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + +
Sbjct: 412 RFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQ 471
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+P+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P
Sbjct: 472 NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFANT-KLTPNPD 530
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSR 585
N+ + L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR
Sbjct: 531 NKAEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSR 587
Query: 586 TRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
+RND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF
Sbjct: 588 SRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMF 647
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
FDED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR
Sbjct: 648 GFDEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWR 707
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
++ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFI
Sbjct: 708 LYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFI 767
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
RMID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +I
Sbjct: 768 RMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
LSRQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAM
Sbjct: 828 LSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAM 887
Query: 885 TRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHF 944
TR+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 888 TRAEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNF 947
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIH 1004
FI ++ LT + +G LE + DNRQSD I AL+ML+ VE N ++AAI
Sbjct: 948 SYRFIGEDQLTREAIGELETKSPLQDSFQADNRQSDTIKEALEMLKEVEVYNTLHRAAIE 1007
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHE 1062
LP+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HE
Sbjct: 1008 LPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHE 1067
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
LMQR+ LS+Q++L + L ++ + V+ I +DKIL FF T+ LG+ I AN D +YR
Sbjct: 1068 LMQRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTA-LGQEILANTDHLYR 1126
Query: 1123 EAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLY 1182
E PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY
Sbjct: 1127 EQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALY 1186
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1187 EEALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
Length = 1216
Score = 1113 bits (2878), Expect = 0.0, Method: Composition-based stats.
Identities = 651/1230 (52%), Positives = 850/1230 (69%), Gaps = 32/1230 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGCQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKESF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGR 299
+ L + R D + AK AAY ++++I +++ FDS +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQ 293
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQ 349
L ++ + +G +T A K + ++ ++L L TI YQ
Sbjct: 294 AVLARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQITILDYQ 351
Query: 350 DQ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID 405
++ + L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +
Sbjct: 352 ERYHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQE 411
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
++HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + +
Sbjct: 412 RFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQ 471
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+P+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P
Sbjct: 472 NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFANT-KLTPNPD 530
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSR 585
N+ + L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR
Sbjct: 531 NKAEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSR 587
Query: 586 TRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
RND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF
Sbjct: 588 NRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMF 647
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
FDED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR
Sbjct: 648 GFDEDELARLSLQKAEDKAHENLYEKLVNAQKKASSQKGLIHTALAEKLKQFMDILASWR 707
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
++ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFI
Sbjct: 708 LYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFI 767
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
RMID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +I
Sbjct: 768 RMIDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVI 827
Query: 826 LSRQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
LSRQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAM
Sbjct: 828 LSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAM 887
Query: 885 TRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHF 944
TR+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 888 TRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNF 947
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIH 1004
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI
Sbjct: 948 SYRFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIE 1007
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHE 1062
LP+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HE
Sbjct: 1008 LPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHE 1067
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
LMQ + LS+Q++L + L ++ + V+ I +DKIL FF T+ LG+ I AN D +YR
Sbjct: 1068 LMQIIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTA-LGQEILANTDHLYR 1126
Query: 1123 EAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLY 1182
E PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY
Sbjct: 1127 EQPFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALY 1186
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1187 EEALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
gi|15903084|ref|NP_358634.1| First subunit of major exonuclease [Streptococcus pneumoniae R6]
gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39]
gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6]
gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39]
Length = 1216
Score = 1107 bits (2862), Expect = 0.0, Method: Composition-based stats.
Identities = 649/1228 (52%), Positives = 841/1228 (68%), Gaps = 28/1228 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTS NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSAQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ +L+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLILENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-------EQLQDWVLHF 293
+ L + R D + AK AAY ++++I Q D +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQESDSQAYQ 293
Query: 294 DSLYGRDGLGKLANDIA-TLIPSGNDVTVAGVKYPVFRSLH-SRLRGLKHLETIFKYQDQ 351
L + K N A T D+ Y R ++L L I YQ++
Sbjct: 294 AVLARVVAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQER 353
Query: 352 ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKY 407
+ L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +++
Sbjct: 354 YHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERF 413
Query: 408 HEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + ++P
Sbjct: 414 HEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNP 473
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ G+LI+LKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P N+
Sbjct: 474 QEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPNPDNK 532
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR+R
Sbjct: 533 AAFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSR 589
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
ND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF F
Sbjct: 590 NDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGF 649
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
DED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR +
Sbjct: 650 DEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWRLY 709
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFIRM
Sbjct: 710 AKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRM 769
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
ID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +ILS
Sbjct: 770 IDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILS 829
Query: 828 RQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
RQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAMTR
Sbjct: 830 RQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTR 889
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 890 AEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNFSY 949
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI LP
Sbjct: 950 RFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIELP 1009
Query: 1007 TVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HELM
Sbjct: 1010 SVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELM 1069
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
QR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YRE
Sbjct: 1070 QRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYREQ 1128
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY +
Sbjct: 1129 PFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALYEE 1188
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1189 ALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
Length = 1216
Score = 1104 bits (2855), Expect = 0.0, Method: Composition-based stats.
Identities = 649/1228 (52%), Positives = 839/1228 (68%), Gaps = 28/1228 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVELKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T N Q+WL ++FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNSQKWLSDSFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-------EQLQDWVLHF 293
+ L + R D + AK AAY ++++I Q D +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEICSLNQESDSQAYQ 293
Query: 294 DSLYGRDGLGKLANDIA-TLIPSGNDVTVAGVKYPVFRSLH-SRLRGLKHLETIFKYQDQ 351
L + K N A T D+ Y R ++L L I YQ++
Sbjct: 294 AVLARVVAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQER 353
Query: 352 ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKY 407
+ L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +++
Sbjct: 354 YHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERF 413
Query: 408 HEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + ++P
Sbjct: 414 HEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNP 473
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ G+LILLKENFRS SEVL TN VF LMD+ VGEI YD+ HQLV ++ + P P N+
Sbjct: 474 QEGRLILLKENFRSSSEVLSTTNDVFERLMDQEVGEINYDNMHQLVFANT-KLTPNPDNK 532
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
+ L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR+R
Sbjct: 533 AEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSR 589
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
ND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF F
Sbjct: 590 NDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGF 649
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
DED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR +
Sbjct: 650 DEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWRLY 709
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFIRM
Sbjct: 710 AKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRM 769
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
ID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +ILS
Sbjct: 770 IDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILS 829
Query: 828 RQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
RQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAMTR
Sbjct: 830 RQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTR 889
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 890 AEKKLYLVGKGSREKLEAKQYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNFSY 949
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
FI ++ LT + +G LE + + DNRQSD I AL ML+ VE N ++AAI LP
Sbjct: 950 RFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALKMLKEVEVYNTLHRAAIELP 1009
Query: 1007 TVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HELM
Sbjct: 1010 SVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELM 1069
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
QR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YRE
Sbjct: 1070 QRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYREQ 1128
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY +
Sbjct: 1129 PFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALYEE 1188
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
ALS++Y+I+ ++ YLILLG ++ +VV++
Sbjct: 1189 ALSRAYSIENIEKYLILLGKDEAQVVKV 1216
>gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
Length = 1216
Score = 1102 bits (2851), Expect = 0.0, Method: Composition-based stats.
Identities = 649/1228 (52%), Positives = 841/1228 (68%), Gaps = 28/1228 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAANELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ LL+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLLLENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-------EQLQDWVLHF 293
+ L + R D + AK AAY ++++I Q D +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQESDSQAYQ 293
Query: 294 DSLYGRDGLGKLANDIA-TLIPSGNDVTVAGVKYPVFRSLH-SRLRGLKHLETIFKYQDQ 351
L + K N A T D+ Y R ++L L TI YQ++
Sbjct: 294 AVLARVVAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQER 353
Query: 352 ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKY 407
+ L + Q+F F + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +++
Sbjct: 354 YHQDTWELAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERF 413
Query: 408 HEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + ++P
Sbjct: 414 HEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNP 473
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P N+
Sbjct: 474 QEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPNPDNK 532
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
+ L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR+R
Sbjct: 533 AEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSR 589
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
ND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF F
Sbjct: 590 NDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGF 649
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
DED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL + SWR +
Sbjct: 650 DEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQVMDILASWRLY 709
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFIRM
Sbjct: 710 AKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRM 769
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
ID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +ILS
Sbjct: 770 IDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILS 829
Query: 828 RQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
RQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAMTR
Sbjct: 830 RQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTR 889
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+EKKLYLVGKGS+EKL + ++N L R FQDWL I + D+L+F
Sbjct: 890 AEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWVISKVFTKDKLNFSY 949
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI LP
Sbjct: 950 RFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIELP 1009
Query: 1007 TVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HELM
Sbjct: 1010 SVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELM 1069
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
Q + LS+Q++L + L ++ + V+ I +DKIL FF T+ LG+ I AN D +YRE
Sbjct: 1070 QIIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTA-LGQEILANTDHLYREQ 1128
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY +
Sbjct: 1129 PFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALYEE 1188
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1189 ALSRAYSIENIEKYLILLGKDEVQVVKV 1216
>gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae TIGR4]
Length = 1177
Score = 1065 bits (2753), Expect = 0.0, Method: Composition-based stats.
Identities = 629/1181 (53%), Positives = 805/1181 (68%), Gaps = 28/1181 (2%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTS NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSAQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RGV I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
A IGTMD+FTQK + ++GY L I+PNFRILQ++SEQ +L+N+VF ++F + G Q E F
Sbjct: 121 AAIGTMDSFTQKFLGKHGYLLDIAPNFRILQNQSEQLILENEVFHEVFEAHYQGKQKETF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
+ L++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+
Sbjct: 181 SHLLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLT 239
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-------EQLQDWVLHF 293
+ L + R D + AK AAY ++++I Q D +
Sbjct: 240 EQIKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIGSLNQESDSQAYQ 293
Query: 294 DSLYGRDGLGKLANDIA-TLIPSGNDVTVAGVKYPVFRSLH-SRLRGLKHLETIFKYQDQ 351
L + K N A T D+ Y R ++L L I YQ++
Sbjct: 294 AVLARVVAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQER 353
Query: 352 ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKY 407
+ L + QSF DF + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +++
Sbjct: 354 YHGDTWKLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFPQVRESYQERF 413
Query: 408 HEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + ++P
Sbjct: 414 HEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNP 473
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ G+LI+LKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P N+
Sbjct: 474 QEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPNPDNK 532
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR+R
Sbjct: 533 AAFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSR 589
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
ND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF F
Sbjct: 590 NDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGF 649
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
DED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR +
Sbjct: 650 DEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWRLY 709
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFIRM
Sbjct: 710 AKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRM 769
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
ID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +ILS
Sbjct: 770 IDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILS 829
Query: 828 RQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
RQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAMTR
Sbjct: 830 RQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTR 889
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 890 AEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNFSY 949
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI LP
Sbjct: 950 RFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIELP 1009
Query: 1007 TVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HELM
Sbjct: 1010 SVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELM 1069
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
QR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YRE
Sbjct: 1070 QRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYREQ 1128
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKF 1165
PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++
Sbjct: 1129 PFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRY 1169
>gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
Length = 770
Score = 1062 bits (2746), Expect = 0.0, Method: Composition-based stats.
Identities = 562/776 (72%), Positives = 649/776 (83%), Gaps = 6/776 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
MTFKPFL ++IA +Q +E SDKKQKRTPEQIEAIYT G N+LVSASAGSGKTFVM+ER
Sbjct: 1 MTFKPFLNPEDIAVIQTEEKNSDKKQKRTPEQIEAIYTFGNNVLVSASAGSGKTFVMVER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DK+LRGV ID LFISTFTVKAAGELKERLEKKI E L+ LKQFL++QL+G+QT
Sbjct: 61 ILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKINESLKSAESDDLKQFLTQQLVGIQT 120
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAFTQK+V QYGYTLGISP FRILQDK+EQD++KN+V+ DLF+DY TG A F
Sbjct: 121 ADIGTMDAFTQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAASF 180
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
KLV+NF+GNRKDS FR+++YK+Y FSQ+TDNP+RW+ FLKGA TY DF AIP+QEV
Sbjct: 181 IKLVKNFSGNRKDSKAFREMVYKVYAFSQSTDNPKRWMQTVFLKGAQTYTDFEAIPDQEV 240
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
LN +Q TA LRD+TD EDYKQ+TAKG PTA Y++HLK+IE L W F+ LYG+
Sbjct: 241 SSLLNVMQTTANQLRDLTDQEDYKQLTAKGVPTANYKKHLKIIENLVHWSQDFNLLYGKK 300
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL LA DI +IPSGNDVTVAGVKYP+F+ LH+R+ GLKHLE IFKYQ +SL LL++LQ
Sbjct: 301 GLTNLARDITNVIPSGNDVTVAGVKYPIFKQLHNRIVGLKHLEVIFKYQGESLFLLELLQ 360
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
SF LDFS+QYLQ K+QENAFEFSDIAHFAIQILEEN IRQLY DKYHEVMVDEYQDNNH
Sbjct: 361 SFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQDNNH 420
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN K+K +Q++P GKLI+LKENFR
Sbjct: 421 TQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKYKAYQDNPSQGKLIILKENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
SQSEVLD+TNSVFTHLMDE VG+ILYD++HQL AGS Q+ +P N+TQVL+ DT +
Sbjct: 481 SQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDI 540
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
D + IS E KLVAKEIIRLH EE V F+DITLLVSSRTRNDGILQTFD YGI
Sbjct: 541 DDSDSQ--QYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGILQTFDRYGI 598
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF F+EDDL R+A+Q++
Sbjct: 599 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLTRIAIQDV 658
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
K Y K++ + + +G LIT LS+K+D F +TF +WR+F+ +SLYDLIWKI
Sbjct: 659 ----KMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLIWKI 714
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQN 776
YND+FYYDYVG+LPK+EQRQANLYALALRA+ FEKTGFKGLSRFIRMIDK+LEN+N
Sbjct: 715 YNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEN 770
>gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
Length = 863
Score = 1030 bits (2664), Expect = 0.0, Method: Composition-based stats.
Identities = 534/842 (63%), Positives = 661/842 (78%), Gaps = 5/842 (0%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLGQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F L FS+ YL K+QE+AFEFSDI HFAI+ILEEN IRQ Y YHEVMVDEYQDNNH
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEENTDIRQSYQQHYHEVMVDEYQDNNH 433
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ E GK+ILLKENFR
Sbjct: 434 MQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKTEQGKVILLKENFR 493
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT-KDQQ 539
SQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+L+Y++ KD
Sbjct: 494 SQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDG 553
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND I TF+ YG
Sbjct: 554 N----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYG 609
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDEDDLAR+ALQ
Sbjct: 610 IPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQK 669
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWK 719
+ K LY+K++ A G+G +LI + L KL+ F +T SWR ++ L SLYDLIWK
Sbjct: 670 DNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWK 729
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA 779
I+ND+FY+D+V S K+EQ QANLYALALRA+ FEK+G+KGL FI+MIDK+LE QNDLA
Sbjct: 730 IFNDRFYFDFVASQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLA 789
Query: 780 DVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
DVEVA PK AV LMTIHKSKGL+F YVFILN DK+FS+ D+ IL+RQ+G+GIKY+AD
Sbjct: 790 DVEVAAPKQAVNLMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLAD 849
Query: 840 MK 841
+K
Sbjct: 850 IK 851
>gi|148989182|ref|ZP_01820572.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
gi|147925405|gb|EDK76483.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
Length = 1034
Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats.
Identities = 534/1048 (50%), Positives = 708/1048 (67%), Gaps = 32/1048 (3%)
Query: 183 LVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKD 242
+++NFAG KD RQ +YKIYDF Q+T NPQ+WL E+FLKG DF++ E+ +
Sbjct: 1 MLKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSESFLKGFEK-ADFTSEKEKLTEQ 59
Query: 243 FLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMI-EQLQDWVLHFDSLYGRDG 301
L + R D + AK AAY ++++I +++ DS +
Sbjct: 60 IKQALWDLESFFRYHLDND------AKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAV 113
Query: 302 LGKLANDIATLIPSGNDVTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQDQ 351
L ++ + +G +T A K + ++ ++L L TI YQ++
Sbjct: 114 LARVV--AISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQER 171
Query: 352 ----SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKY 407
+ L + Q+F F + Y Q K QENAFEF+DI+H+ I+ILE +R+ Y +++
Sbjct: 172 YHQDTWELAKTFQTFMSHFVEAYRQCKRQENAFEFTDISHYTIEILENFPQVRESYQERF 231
Query: 408 HEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
HEVMVDEYQD NH QERMLELLSNG NRFMVGDIKQSIYRFRQADPQIFN+KF+ + ++P
Sbjct: 232 HEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNP 291
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ GKLILLKENFRS SEVL ATN VF LMD+ VGEI YD+ HQLV ++ + P P N+
Sbjct: 292 QKGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFANT-KLTPDPDNK 350
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
+ L+YD D ++ E + GE++LV KEI++LH E+ V F++I LL SSR+R
Sbjct: 351 AEFLLYDKDDTGEEE---ESQTETKLTGEMRLVIKEILKLHQEKGVAFKEIALLTSSRSR 407
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
ND IL +YGIP+ TDG + NYL+S+EV VMLDTLR I NPL DYALVAL++SPMF F
Sbjct: 408 NDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGF 467
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
DED+LARL+LQ D+ +NLYEK+ NA+ Q LI AL+ KL F + SWR +
Sbjct: 468 DEDELARLSLQKAEDKVHENLYEKLVNAQKMASSQKGLIHTALAEKLKQFMDILASWRLY 527
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ +SLYDLIWKIYND+FYYDYVG+LP RQANLYALALRAD FEK+ FKGLSRFIRM
Sbjct: 528 AKTHSLYDLIWKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRM 587
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
ID++LE Q+DLA V VA PK+AV LMTIHKSKGLEF YVFILN+D+ F+ QD S +ILS
Sbjct: 588 IDQVLEAQHDLASVAVAPPKDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILS 647
Query: 828 RQNGVGIKYIADMKEELEEKLLP-TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
RQNG+G+KYIA M+ E P T+K+S+ +L Y+ N+ EL+LA+ SEQMRLLYVAMTR
Sbjct: 648 RQNGLGVKYIAKMETGAVEDHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTR 707
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+EKKLYLVGKGS+EKL + ++N L R FQDWL AI + D+L+F
Sbjct: 708 AEKKLYLVGKGSREKLESKEYPAAKNGKLNSNTRLQARNFQDWLWAISKVFTKDKLNFSY 767
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
FI ++ LT + +G LE + + DNRQSD I AL+ML+ VE N ++AAI LP
Sbjct: 768 RFIGEDQLTREAIGELETKSPLQDSSQADNRQSDTIKEALEMLKEVEVYNTLHRAAIELP 827
Query: 1007 TVRTPSQIKKFYEPVMETEGVEV--MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+V+TPSQIKKFYEPVM+ EGVE+ S K F+LP FS K K +GS+ HELM
Sbjct: 828 SVQTPSQIKKFYEPVMDMEGVEIAGQGQSVGKKISFDLPDFSTKEKVTGAEIGSATHELM 887
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
QR+ LS+Q++L + L ++ + V+ I +DKIL FF T LG+ I AN D +YRE
Sbjct: 888 QRIDLSQQLTLASLTETLKQVQTSQAVRDKINLDKILAFFDTV-LGQEILANTDHLYREQ 946
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
PF+ML+ D S ED+VVRGI+DGY+L++N+IVLFDYKTD++ + +RYRGQ+ LY +
Sbjct: 947 PFSMLKRDQKSQEDFVVRGILDGYLLYENKIVLFDYKTDRYDEPSQLVDRYRGQLALYEE 1006
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
ALS++Y+I+ ++ YLILLG ++++VV++
Sbjct: 1007 ALSRAYSIENIEKYLILLGKDEVQVVKV 1034
>gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp. lactis
Il1403]
gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp.
lactis Il1403]
Length = 1203
Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats.
Identities = 520/1229 (42%), Positives = 752/1229 (61%), Gaps = 78/1229 (6%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TPEQ EAI++SG NILVSASAGSGKTFVM +RI++K+ +G+ ID+LFISTFT KAA E
Sbjct: 5 KLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASE 64
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
L+ RLE+ + + + ++D L+ L L ADIGTMD+FTQKL + I PN
Sbjct: 65 LRMRLERDLKKARQESSDENQACRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPN 124
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQA-----ELFTKLVRNFAGNRKDSSNFRQII 201
FRIL D++E DL++ +VF+ L Y +GD E F +L++NF+ +R + + F++++
Sbjct: 125 FRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFEELIKNFSKDR-NIAGFQKVV 183
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYK-------DFSAIPEQEVKDFLNTLQETAL-- 252
Y IY F+ AT+NP +WL FLKG TYK DFSA ++ + F L ET+L
Sbjct: 184 YTIYRFASATENPIKWLENQFLKGFETYKSLIDLSADFSADIKENLLIFFELL-ETSLTN 242
Query: 253 -------ALRDVTDL-EDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGK 304
A RD +L D K + T + ++ F S+ +G
Sbjct: 243 GVVAKKGAGRDKANLILDNKNELLEAITTKDFATFTEL----------FLSIDTDIRVGS 292
Query: 305 LANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRG----LKHLETIFKYQDQSLPLLQVLQ 360
++I + + D +V +S +R +KH + I KYQ+Q+ + + LQ
Sbjct: 293 SKDEILSALKK--DFSVQKQDLVGSKSKPGEIRKFVDKIKHGQLIEKYQNQAFEIAENLQ 350
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F ++F + YL+ K ENAFE+SDIAHFAI+ILEEN IR+ + Y E+M+DEYQD +H
Sbjct: 351 KFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEIMIDEYQDTSH 410
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG N FMVGDIKQSIY FR ADP +F +K+KD+ + +LI LKENFR
Sbjct: 411 TQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFR 470
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS------SAQKIPYPQNETQVLIYD 534
S+ EVL TN +F HLMDE +GE+ Y LV G+ ++K YP ++L+Y
Sbjct: 471 SRGEVLTFTNDIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYP----ELLLY- 525
Query: 535 TKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQT 594
+ D ++ +IS GE+K A+EI +L E V+ +DI +LV S++ N+ I
Sbjct: 526 --KENTSDEETDESEVRISDGEIKGAAQEIKKL-IEAGVEPKDIAILVRSKSNNNKIEDI 582
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
Y IP+V D G ++LKS+EV++MLD LR+IDNPL D +LVA+LRSP+F F+ED+L R
Sbjct: 583 LLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTR 642
Query: 655 LALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLY 714
++ Q H ++K+ + N +GQ +LI +L KL AF++ F WR+ +++
Sbjct: 643 ISTQG---SHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIH 699
Query: 715 DLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILEN 774
DL+WKIY + +Y+DYVG+L E RQANL ALA+RA+++E +G+KGL +F+R+I+K +E
Sbjct: 700 DLLWKIYTETYYFDYVGALKNGEIRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQ 759
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
NDLA V + LP++AV +MT HKSKGLEF YVF++N+ +F+ +D+ +ILSR+NG+G+
Sbjct: 760 NNDLASVNIKLPQSAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKENVILSRENGLGM 819
Query: 835 KYIADMKEELEEKL-LPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
K IAD+K+E + P V M+T PY +NK + A LSE+MR+LYVA TR++KKLYL
Sbjct: 820 KLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYL 879
Query: 894 VG--KGSQEKLG-DQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFI 949
VG K + +K G D YD S E L R FQ W+LA++ A +L K +
Sbjct: 880 VGKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQ---NATKLPIKLNVY 936
Query: 950 TDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQH---YKAAIHLP 1006
T E+L +K Q ++++ + D+I D ++ +K+ + ++AA L
Sbjct: 937 TKEELEAEK--LEFTSQPDFKKLVEESEKFDNIMAHSDEIQKAQKIMNYEYPHQAATELS 994
Query: 1007 TVRTPSQIKK-FYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQ 1065
+++TPSQ+KK YE ++ ++ ++ + K + F K K +GS+ H MQ
Sbjct: 995 SIQTPSQVKKRSYEKQLQVGEIQP-KSEFTRVKKLDFSDFGPK-KVTAAEIGSATHSFMQ 1052
Query: 1066 RLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAP 1125
S Q L L E+ +E +K I + KIL F T G+ + N DK +EAP
Sbjct: 1053 YADFS-QADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTD-FGQFLSENVDKTVKEAP 1110
Query: 1126 FAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQA---IKERYRGQMTLY 1182
F+ML+ D + E Y+VRGI DG++ ++IVLFDYKTD+FT+S A IKERYR QM LY
Sbjct: 1111 FSMLRTDEFAKEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLY 1170
Query: 1183 AQALSQSYNIQQVDSYLILLGGEKLEVVE 1211
++AL ++Y++ QVD YLILLGG + VE
Sbjct: 1171 SEALKKAYDVNQVDKYLILLGGPQQVFVE 1199
>gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris
MG1363]
gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris
MG1363]
Length = 1203
Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats.
Identities = 513/1227 (41%), Positives = 750/1227 (61%), Gaps = 74/1227 (6%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TPEQ EAI++SG NILVSASAGSGKTFVM +RI++K+ +G+ ID+LFISTFT KAA E
Sbjct: 5 KLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASE 64
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
L+ RLE+ + + + ++D L+ L L ADIGTMD+FTQKL + I PN
Sbjct: 65 LRMRLERDLKKARQESSDDEEAHRLTLALQNLSNADIGTMDSFTQKLTKANFNRVNIDPN 124
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQA-----ELFTKLVRNFAGNRKDSSNFRQII 201
FRIL D++E DL++ +VF+ L Y + D++ + F KL++NF+ +R + F++++
Sbjct: 125 FRILADQTESDLIRQEVFEQLVESYLSADESLNISKDKFEKLIKNFSKDR-NILGFQKVV 183
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLE 261
Y IY F+ AT+NP WL FLKG TYK + + E DF ++E L ++ +
Sbjct: 184 YTIYRFASATENPISWLENQFLKGFETYKSLTDLSE----DFTVNVKENLLTFFELLENS 239
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGK----LANDIATLIPSGN 317
V AK A + +I ++ +L +++ +D + L+ D + S
Sbjct: 240 LTNGVIAK---KGAGRDKANLILDNKNELL--EAISKKDFVTCTALFLSIDTDIRVGSSK 294
Query: 318 DVTVAGVKYPVFRSLHSRLRG--------------LKHLETIFKYQDQSLPLLQVLQSFT 363
D ++ +K F + L G +KH + I KYQ+Q+ + LQ F
Sbjct: 295 DEALSALKKD-FSAQKQDLVGSKSKPGELRKFVDKIKHGQLIEKYQNQAFEIASDLQKFI 353
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423
+DF K YL+ K ENAFE+SDIAHFAI+ILEEN IR+ + Y E+M+DEYQD +HTQE
Sbjct: 354 IDFYKTYLERKKNENAFEYSDIAHFAIEILEENPDIRENLREHYDEIMIDEYQDTSHTQE 413
Query: 424 RMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
RMLELLSNG N FMVGDIKQSIY FR ADP +F +K+K + + +LI LKENFRS+
Sbjct: 414 RMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKSYDQAENPNQLIRLKENFRSRG 473
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS------SAQKIPYPQNETQVLIYDTKD 537
EVL+ TN +F HLMDE +GE+ Y LV G+ A+K YP ++L+Y
Sbjct: 474 EVLNFTNDIFKHLMDEKLGEMTYGKEEALVQGNISDYPVEAEKDFYP----ELLLYKENT 529
Query: 538 QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDD 597
+ + +ED +IS GE+K A+EI +L E V+ +DI +LV S++ N+ I
Sbjct: 530 SEEE---IEDSEVKISDGEIKGAAQEIKKL-IEYGVEPKDIAILVRSKSNNNKIEDILLS 585
Query: 598 YGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLAL 657
Y IP+V D G ++LKS+EV++MLD LR+IDNPL D +LVA+LRSP+F F+ED+L R+++
Sbjct: 586 YDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISV 645
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLI 717
Q D ++K+ + +G+ +LI +L KL AF + F WR+ ++ L+
Sbjct: 646 QGSRDLR---FWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLL 702
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQND 777
WKIY + +Y+DYVG+L E RQANL AL++RA+++E +G+KGL +F+R+I+K +E ND
Sbjct: 703 WKIYTETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNND 762
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYI 837
LA V + LP+NAV +MT HKSKGLEF YVF++N+ +F+ +D+ +ILSR++G+G+KYI
Sbjct: 763 LASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYI 822
Query: 838 ADMKEELEEKL-LPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG- 895
AD+K E + P V M+T PY +NK + A LSE+MR+LYVA TR++KKLYLVG
Sbjct: 823 ADLKAEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGK 882
Query: 896 -KGSQEKLG-DQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDE 952
K + +K G + YD + E L R FQ W+LA++ A +L K + T +
Sbjct: 883 IKDTDKKAGLELYDAATLEGKILSDKFRNSSRGFQHWILALQ---NATKLPMKLNVYTKD 939
Query: 953 DLTEDKMGSLEAEQAYDADNL-KDNRQSDDITRALDMLEAVEKLNQH---YKAAIHLPTV 1008
+L +K LE D L +++ + D+I D ++ +K+ + ++AA L ++
Sbjct: 940 ELETEK---LEFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSI 996
Query: 1009 RTPSQIKK-FYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRL 1067
+TPSQ+KK YE ++ V+ + + K + F K K +GS+ H MQ
Sbjct: 997 QTPSQVKKRSYEKQLQVGEVQPVSEFVRVK-NLDFSDFGPK-KITAAEMGSATHSFMQYA 1054
Query: 1068 HLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFA 1127
S Q L L E+ +E +K I + KIL F T + G+ + N DK +EAPF+
Sbjct: 1055 DFS-QADLFSFQATLDEMGFDEKIKNQIDITKILTLFDT-EFGQFLSENVDKTVKEAPFS 1112
Query: 1128 MLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQA---IKERYRGQMTLYAQ 1184
ML+ D + E Y+VRGI DG++ ++I+LFDYKTD+FTN A IKERY+ QM LY++
Sbjct: 1113 MLRTDEFAKEQYIVRGICDGFVKLADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSE 1172
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVE 1211
AL ++Y++ Q+D YLILLGG + VE
Sbjct: 1173 ALQKAYHVNQIDKYLILLGGPRKVFVE 1199
>gi|116510847|ref|YP_808063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactococcus
lactis subsp. cremoris SK11]
gi|116106501|gb|ABJ71641.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactococcus
lactis subsp. cremoris SK11]
Length = 1203
Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats.
Identities = 514/1230 (41%), Positives = 749/1230 (60%), Gaps = 80/1230 (6%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TPEQ EAI++SG NILVSASAGSGKTFVM +RI++K+ +G+ ID+LFISTFT KAA E
Sbjct: 5 KLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASE 64
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
L+ RLE+ + + + ++D L+ L L ADIGTMD+FTQKL + I PN
Sbjct: 65 LRMRLERDLKKARQESSDDEEAHRLTLALHNLSNADIGTMDSFTQKLTKANFNRVNIDPN 124
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQA-----ELFTKLVRNFAGNRKDSSNFRQII 201
FRIL D++E DL++ +VF+ L Y + D++ + F KL++NF+ +R + F++++
Sbjct: 125 FRILADQTESDLIRQEVFEQLVESYLSADESLNISKDKFEKLIKNFSKDR-NILGFQKVV 183
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLE 261
Y IY F+ AT+NP WL FLKG TYK + + E DF ++E L ++ +
Sbjct: 184 YTIYRFASATENPISWLENQFLKGFETYKSLTDLSE----DFTVNVKENLLTFFELLENS 239
Query: 262 DYKQVTAK-----GTPTAAYQRHLKMIEQL--QDWVLHFDSLYGRDGLGKLANDIATLIP 314
V AK +++E + +D+V F +L+ L+ D +
Sbjct: 240 LTNGVIAKKGAGRDKANLILDNKNELLEAISKKDFVT-FTALF-------LSIDTDIRVG 291
Query: 315 SGNDVTVAGVKYPVFRSLHSRLRG--------------LKHLETIFKYQDQSLPLLQVLQ 360
S D T++ +K F + L G +KH + I KYQ Q+ + LQ
Sbjct: 292 SSKDETLSALKKD-FSAQKQDLVGSKSKPGELRKFVDKIKHGQLIEKYQKQAFEIASDLQ 350
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNH 420
F ++F K YL+ K ENAFE+SDIAHFAI+ILEEN IR+ + Y E+M+DEYQD +H
Sbjct: 351 KFIIEFYKTYLERKKNENAFEYSDIAHFAIEILEENPDIRENLREHYDEIMIDEYQDTSH 410
Query: 421 TQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
TQERMLELLSNG N FMVGDIKQSIY FR ADP +F +K+K + + +LI LKENFR
Sbjct: 411 TQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKSYDQAENPNQLIRLKENFR 470
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS------SAQKIPYPQNETQVLIYD 534
S+ EVL+ TN +F HLMDE +GE+ Y LV G+ A+K YP ++L+Y
Sbjct: 471 SRGEVLNFTNDIFKHLMDEKLGEMTYGKEKALVQGNISDYPVEAEKDFYP----ELLLYK 526
Query: 535 TKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQT 594
+ + +ED +IS GE+K A+EI +L E V+ +DI +LV S++ N+ I
Sbjct: 527 ENTSEEE---IEDSEVKISDGEIKGAAQEIKKL-IESGVEPKDIAILVRSKSNNNKIEDI 582
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
Y IP++ D G ++LKS+EV++MLD LR+IDNPL D +LVA+LRSP+F F+ED+L R
Sbjct: 583 LLSYDIPVILDEGRVDFLKSMEVLIMLDILRAIDNPLYDLSLVAMLRSPLFGFNEDELTR 642
Query: 655 LALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLY 714
+++Q D ++K+ + +G+ +LI +L KL AF + F WR+ ++
Sbjct: 643 ISVQGSRDLR---FWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNQIPIH 699
Query: 715 DLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILEN 774
L+WKIY + +Y+DYVG+L E RQANL AL++RA+++E +G+KGL +F+R+I+K +E
Sbjct: 700 RLLWKIYTETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQ 759
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
NDLA V + LP+NAV +MT HKSKGLEF YVF++N+ +F+ +D+ +ILSR++G+G+
Sbjct: 760 NNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGM 819
Query: 835 KYIADMKEELEEKL-LPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
KYIAD+K E + P V M+T PY +NK + A LSE+MR+LYVA TR++KKLYL
Sbjct: 820 KYIADLKAEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYL 879
Query: 894 VG--KGSQEKLG-DQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFI 949
VG K + +K G + YD + E L R FQ W+LA++ A +L K +
Sbjct: 880 VGKIKDTDKKAGLELYDTATLEGKILSDKFRNSSRGFQHWILALQ---NATKLPMKLNVY 936
Query: 950 TDEDLTEDKMGSLEAEQAYDADNL-KDNRQSDDITRALDMLEAVEKLNQH---YKAAIHL 1005
T ++L +K LE D L +++ + D+I D ++ +K+ + ++AA L
Sbjct: 937 TKDELETEK---LEFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATEL 993
Query: 1006 PTVRTPSQIKK-FYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELM 1064
+++TPSQ+KK YE ++ V+ + + K + F K K +GS+ H M
Sbjct: 994 SSIQTPSQVKKRSYEKQLQVGEVQPVSEFVRVK-NLDFSDFGSK-KITAAEIGSATHSFM 1051
Query: 1065 QRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREA 1124
Q S Q L L E+ +E +K I + KIL F T + GK + N DK +EA
Sbjct: 1052 QYADFS-QADLFSFQATLDEMGFDEKIKNQIDITKILTLFDT-EFGKFLSENVDKTVKEA 1109
Query: 1125 PFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQA---IKERYRGQMTL 1181
PF+ML+ D + E Y+VRGI DG++ ++I+LFDYKTD+FTN A IKERY+ QM L
Sbjct: 1110 PFSMLRTDEFAKEQYIVRGICDGFVKIADKIILFDYKTDRFTNVSAISEIKERYKDQMNL 1169
Query: 1182 YAQALSQSYNIQQVDSYLILLGGEKLEVVE 1211
Y++AL ++Y++ Q+D YLILLGG + VE
Sbjct: 1170 YSEALQKAYHVNQIDKYLILLGGPRKVFVE 1199
>gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis]
Length = 1173
Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats.
Identities = 505/1209 (41%), Positives = 735/1209 (60%), Gaps = 68/1209 (5%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TPEQ EAI++SG NILVSASAGSGKTFVM +RI++K+ +G+ ID+LFISTFT KAA E
Sbjct: 5 KLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASE 64
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
L+ RLE+ + + + ++D L+ L L ADIGTMD+FTQKL + I PN
Sbjct: 65 LRMRLERDLKKARQESSDDEEAHRLTLALQNLSNADIGTMDSFTQKLTKANFNRVNIDPN 124
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQA-----ELFTKLVRNFAGNRKDSSNFRQII 201
FRIL D++E DL++ +VF+ L Y + D++ + F KL++NF+ +R + F++++
Sbjct: 125 FRILADQTESDLIRQEVFEQLVESYLSADESLNISKDKFEKLIKNFSKDR-NILGFQKVV 183
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLE 261
Y IY F+ AT+NP WL FLKG TYK + + E DF ++E L ++ +
Sbjct: 184 YTIYRFASATENPISWLENQFLKGFETYKSLTDLSE----DFTVNVKENLLTFFELLEAI 239
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTV 321
K + +++ + L L D + D+
Sbjct: 240 SKKDFVTCTALFLSIDTDIRVGSSKDE------------ALSALKKDFSA---QKQDLVG 284
Query: 322 AGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFE 381
+ K R ++ KH + I KYQ+Q+ + LQ F +DF K YL+ K ENAFE
Sbjct: 285 SKSKPGELRKFVDKI---KHGQLIEKYQNQAFEIASDLQKFIIDFYKTYLERKKNENAFE 341
Query: 382 FSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDI 441
+SDIAHFAI+ILEEN IR+ + Y E+M+DEYQD +HTQERMLELLSNG N FMVGDI
Sbjct: 342 YSDIAHFAIEILEENPDIRENLREHYDEIMIDEYQDTSHTQERMLELLSNGHNLFMVGDI 401
Query: 442 KQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAV 501
KQSIY FR ADP +F +K+K + + +LI LKENFRS+ EVL+ TN +F HLMDE +
Sbjct: 402 KQSIYGFRLADPGLFLEKYKSYDQAENPNQLIRLKENFRSRGEVLNFTNDIFKHLMDEKL 461
Query: 502 GEILYDDTHQLVAGS------SAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLG 555
GE+ Y LV G+ A+K YP ++L+Y + + +ED +IS G
Sbjct: 462 GEMTYGKEEALVQGNISDYPVEAEKDFYP----ELLLYKENTSEEE---IEDSEVKISDG 514
Query: 556 EVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSV 615
E+K A+EI +L E V+ +DI +LV S++ N+ I Y IP+V D G ++LKS+
Sbjct: 515 EIKGAAQEIKKL-IEYGVEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSM 573
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
EV++MLD LR+IDNPL D +LVA+LRSP+F F+ED+L R+++Q D ++K+ +
Sbjct: 574 EVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQGSRDLR---FWDKILLS 630
Query: 676 RNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPK 735
+G+ +LI +L KL AF + F WR+ ++ L+WKIY + +Y+DYVG+L
Sbjct: 631 LKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIYTETYYFDYVGALKN 690
Query: 736 SEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTI 795
E RQANL AL++RA+++E +G+KGL +F+R+I+K +E NDLA V + LP+NAV +MT
Sbjct: 691 GEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTF 750
Query: 796 HKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKL-LPTVKV 854
HKSKGLEF YVF++N+ +F+ +D+ +ILSR++G+G+KYIAD+K E + P V
Sbjct: 751 HKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLKAEPDVITDFPYALV 810
Query: 855 SMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLG-DQYDGKS- 910
M+T PY +NK + A LSE+MR+LYVA TR++KKLYLVG K + +K G + YD +
Sbjct: 811 KMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDTDKKAGLELYDAATL 870
Query: 911 ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDA 970
E L R FQ W+LA++ A +L K + T ++L +K LE D
Sbjct: 871 EGKILSDKFRNSSRGFQHWILALQ---NATKLPMKLNVYTKDELETEK---LEFTSQPDF 924
Query: 971 DNL-KDNRQSDDITRALDMLEAVEKLNQH---YKAAIHLPTVRTPSQIKK-FYEPVMETE 1025
L +++ + D+I D ++ +K+ + ++AA L +++TPSQ+KK YE ++
Sbjct: 925 KKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRSYEKQLQVG 984
Query: 1026 GVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAEL 1085
V+ + + K + F K K +GS+ H MQ S Q L L E+
Sbjct: 985 EVQPVSEFVRVK-NLDFSDFGPK-KITAAEMGSATHSFMQYADFS-QADLFSFQATLDEM 1041
Query: 1086 SVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYVVRGII 1145
+E +K I + KIL F T + G+ + N DK +EAPF+ML+ D + E Y+VRGI
Sbjct: 1042 GFDEKIKNQIDITKILTLFDT-EFGQFLSENVDKTVKEAPFSMLRTDEFAKEQYIVRGIC 1100
Query: 1146 DGYILFDNRIVLFDYKTDKFTNSQA---IKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
DG++ ++I+LFDYKTD+FTN A IKERY+ QM LY++AL ++Y++ Q+D YLILL
Sbjct: 1101 DGFVKLADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQIDKYLILL 1160
Query: 1203 GGEKLEVVE 1211
GG + VE
Sbjct: 1161 GGPRKVFVE 1169
>gi|76799809|ref|ZP_00781872.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
gi|76584837|gb|EAO61532.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
Length = 416
Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats.
Identities = 261/415 (62%), Positives = 330/415 (79%)
Query: 798 SKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMD 857
SKGLEFKYVFILNIDKKFS+ D+TSPLILSR G+GIKY+ DM+ +LEE++L VKVSM+
Sbjct: 1 SKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVDDMRHDLEEEILLAVKVSME 60
Query: 858 TLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPV 917
TLPY LNKRELRLATLSEQMRLLYVAMTR+EKKLY VG SQ K D YD SENNHLP+
Sbjct: 61 TLPYHLNKRELRLATLSEQMRLLYVAMTRAEKKLYXVGXASQTKWADHYDLVSENNHLPL 120
Query: 918 ADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNR 977
A RE ++TFQDWLLA+ Y EL + +F++ E+LT+ +G + ++ DN +NR
Sbjct: 121 ASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHHIGMVNPSLPFNPDNKVENR 180
Query: 978 QSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTK 1037
QS+DI RA+ +LE+VE++NQ YKAAI LPTVRTPSQ+KKFYEP+++ EGV+VM+T +T
Sbjct: 181 QSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKFYEPILDIEGVDVMETITKTS 240
Query: 1038 PKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQV 1097
F+LP FS KQDP ALGS+VHELMQR+ +S V +EDI AL E++ E +VK AIQ+
Sbjct: 241 VDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSVKAAIQI 300
Query: 1098 DKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVL 1157
+KI +FFQ + LGK IQ + ++REAPFAML+ DP SGE +VVRGIIDGY+L +NRI+L
Sbjct: 301 EKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPESGEKFVVRGIIDGYLLLENRIIL 360
Query: 1158 FDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
FDYKTDKF N +KERY+GQM LYA+AL +SY I+++D YLILLGG++LEVV++
Sbjct: 361 FDYKTDKFVNPLELKERYQGQMALYAEALKKSYEIEKIDKYLILLGGKQLEVVKM 415
>gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
Length = 1249
Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats.
Identities = 398/1266 (31%), Positives = 633/1266 (50%), Gaps = 125/1266 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
TP Q I G N+LVSASAGSGKT V+IERIM KIL G IDQL + TFT AA +K
Sbjct: 8 TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67
Query: 89 ERLEKKITEQL---------RLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGY 139
++LE +I +++ + T A++Q L +QL L A+I T+DAF +++ +Y Y
Sbjct: 68 QKLESQINKRISQLMTDNPAQTTASPAIRQ-LRQQLNLLGVANISTLDAFCLRVIQRYYY 126
Query: 140 TLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQ 199
+ + P FR+L D +E L+++ V+D + D LF L NF+ +R D +
Sbjct: 127 VIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDED-GTLFDLLTANFSNDRSDDG-LSR 184
Query: 200 IIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD 259
+I++++DF+Q+T +P+ WL + + + E Q L + +V
Sbjct: 185 LIFRLFDFAQSTPDPEGWL-------SKLPEPYQVDEEALTASAFYQQQLLPLLINEVDG 237
Query: 260 LE-DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGND 318
++ +Q T + L+++ Q + +L +AT
Sbjct: 238 MQMKLRQAQKVATDADLVPKTLEVLATAQKTLTTLREQLATASWNELRTQVATFKIGALK 297
Query: 319 VTVAGV--KYPVFRSLHSRLRGLKHL-----ETIFKYQDQSLPLLQV--------LQSFT 363
T K +++ + + G+K ET F +Q + + V L T
Sbjct: 298 KTYKDEPEKTARAKTMGTFVDGVKKQMTTLSETYFAADEQQVLDIMVGAKSIVTELVDAT 357
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDK----YHEVMVDEYQDNN 419
F + K + + +FSD+ H +QIL ++ Q + + + EVMVDEYQD N
Sbjct: 358 KQFKTAFAAEKRRRHVLDFSDLEHLTLQILTSDNESSQAALAQLRAQFEEVMVDEYQDIN 417
Query: 420 HTQERMLELLSNGR--NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKE 477
QE +L+LL+ + N FMVGD+KQSIY+FR ADP +F K+ DF +PEHG+ I+L E
Sbjct: 418 SLQESILQLLARDQPGNMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEHGERIVLAE 477
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK- 536
NFRS + V TN +F+ LMD VG+I YD+ L G PQ T +L+Y T+
Sbjct: 478 NFRSVANVDHLTNLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQT-TNLLLYQTET 536
Query: 537 DQQNQDLAVEDDSNQI---SLGEVKLVAKEIIRLHNEEK------------VQFEDITLL 581
D+ +D++ ++ + I ++G + +VA++I+ L ++K ++ D+ LL
Sbjct: 537 DKSTEDVSTDETNFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALL 596
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
V +R N I+ F Y IP+V + QNY ++ E+ +M+ L IDNP D LVA+LR
Sbjct: 597 VPTRNHNLTIIDVFKRYHIPVVVNDA-QNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLR 655
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ DE+ L L +QN + Q + + + G + + + AK++ F
Sbjct: 656 SPIVGLDENQLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEY---GDQVYAKIETFLTQL 712
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
+R+ + N + LIW+IY + DYVG +P +QRQANL+AL RA +E+ FKGL
Sbjct: 713 TEFRDLARRNQIVTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGL 772
Query: 762 SRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMT 821
+F+R I ++ E DLA AV +MTIH SKGLE+ +F++++DK+F+ D
Sbjct: 773 FQFVRFIRRMQEKDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTR 832
Query: 822 SPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLY 881
S +L R+ G+GI Y L P +V TLP + K+ + +E+MR LY
Sbjct: 833 SSALLDREAGIGITY-----------LDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLY 881
Query: 882 VAMTRSEKKLYLVGK-----GSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAA 936
VAMTR++++LYLVG + EK + S+ L R DW+
Sbjct: 882 VAMTRAQQQLYLVGTIKDIDTATEKWRQAF--ASDGRVLSAQARIAATNQLDWVGMAVMR 939
Query: 937 YAADELHFKTSFITDEDLTED------KMGSLEAEQAYDADNLKDNRQS----------- 979
+ A + ++ + + +LT+D ++G A ++ + D +
Sbjct: 940 HPAMKAYWGDEW-PNYELTDDPTKLAVELGDATTVLAEQSEAVTDTQPDALELVEQQVTI 998
Query: 980 --DDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE----PVMETEGVEVMQTS 1033
D +TR D L + + ++A+ ++ S++K+ +E P+M + S
Sbjct: 999 DVDQVTR--DYLTTLLNFHYPHQASTTTTAYQSVSEVKRIFEDPDTPLMNANPTVSQRRS 1056
Query: 1034 YQTK----PKFELPQFSKKAKQDPTA--LGSSVHELMQRLHLSEQVSLEDILTAL----A 1083
T ELPQF + Q PT+ +GS+ H ++++L L++ V+ + + + A
Sbjct: 1057 RPTSRFVTGSLELPQF-LQTTQAPTSAEVGSATHLVLEQLDLTKPVNETTVQSTIDGLVA 1115
Query: 1084 ELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML-------QADPASG 1136
+ NV K I VD I+ F+Q S LG I N KV+RE PF++L D
Sbjct: 1116 NRVLTTNVAKLIAVDTIVAFYQ-SALGSQILDNPAKVHREVPFSLLIPARQIFDVDEHET 1174
Query: 1137 EDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVD 1196
++ GIIDGY+ + + LFDYKTD + +K RY GQ+ LYA AL+ Y +
Sbjct: 1175 GKVLIHGIIDGYLETADGLTLFDYKTDHVKRPEDLKTRYAGQVKLYAAALASMYPGKVTK 1234
Query: 1197 SYLILL 1202
YL L
Sbjct: 1235 QYLYSL 1240
>gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius subsp.
salivarius UCC118]
gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius subsp.
salivarius UCC118]
Length = 1248
Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats.
Identities = 393/1253 (31%), Positives = 639/1253 (50%), Gaps = 117/1253 (9%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TP Q +AI +G NILV+ASAGSGKT V++ER+++KI +GV+ID+L + TFT AA E
Sbjct: 6 KFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKE 65
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
+KER++ + ++L + K+ QL L A+I T+ AF +++ QY Y + + P
Sbjct: 66 MKERIQIALRKELSTADSEEEKRRYLTQLSKLNVANISTLHAFCLQIIKQYYYVINLDPM 125
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
FR+L + +E LL+ +V+DDL + + E F LV NF+ +R D +++ K Y
Sbjct: 126 FRMLTEDTEVALLQENVWDDLREKWYSKKSPE-FENLVVNFSSDRNDDG-LSELVMKTYQ 183
Query: 207 FSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFL--NTLQETALALRDVTDLEDYK 264
F+ A NP WL N L D + ++ + N L + LA ++ D
Sbjct: 184 FANANPNPDEWL--NNLVSEYDLGDQPLMESNFYQNKIKPNVLDQIQLAKDNLKQGMDEA 241
Query: 265 QVTAKGTPTAAYQRHLKMIEQLQDWVL-------------HFDSLYGRDGLGKLANDIAT 311
+++ I++LQD+V+ +F + G L +D
Sbjct: 242 NKLGLEKLYQTFEQDCATIDELQDFVVGCKEWNNLKTTLQNFKFKRAKSDRG-LDDDQKK 300
Query: 312 LIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYL 371
N G K + L + L E I + +S +++ L +F ++
Sbjct: 301 QKERINKTLRDGSK-KIIEDLSVKYFALPEDE-IKELTQKSKQIVETLSEVVKEFGAEFS 358
Query: 372 QAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
+ K + + +FSD+ H +QIL + +++ +K+ E+MVDEYQD N QE +L
Sbjct: 359 KEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQETILT 418
Query: 428 LLS--NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEV 485
++ N N FMVGD+KQSIY FR ADP +F +K++ F + I+L ENFRS V
Sbjct: 419 TIAHKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNDDERIILAENFRSMENV 478
Query: 486 LDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN---ETQVLIYDTKD--QQN 540
TN +F+ LMDE VGE+ YD+ +LV G+ YP+ + +VL+Y+++D Q++
Sbjct: 479 TAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKY----YPEETPIKAEVLVYESEDSSQES 534
Query: 541 QDLAVEDD--SNQISLGEVKLVAKEIIRL-HNEEKV-----------QFEDITLLVSSRT 586
D V +D + + G++ + AK I L N EK+ ++ DI +L +R
Sbjct: 535 DDEPVNEDFSIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGTIRPIEYRDIAILAPTRK 594
Query: 587 RNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFA 646
N + + F G+P+ QNY ++ E+ +M+ L+ IDNP D LVA+LRSP+
Sbjct: 595 NNLILTEEFKRLGVPIFVPDA-QNYFQTTELKIMMSFLQIIDNPYQDIPLVAVLRSPIVG 653
Query: 647 FDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE 706
E++LA L + + + Q + +N + ++ ++L K+ F + +R
Sbjct: 654 LKENELAYLRINDKTGDYFQAVESFYDNF---EVEKASAFAQSLYEKIAIFLKQLTEFRN 710
Query: 707 FSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIR 766
+ N L LIWKIY + + DYVG +P QRQANL+AL RA +E+ FKGL +F+R
Sbjct: 711 MAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAAEYEEMSFKGLFQFVR 770
Query: 767 MIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
I+K+ DL++ + +AVT+MTIH SKGLEF VF+L+ KF++ D+ P +L
Sbjct: 771 FINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDATHKFNVGDLNKPYLL 830
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+ +G+GI Y L P +V DTL + ++ +EQMRLLYVA+TR
Sbjct: 831 NADDGIGISY-----------LDPDTRVKTDTLMKVIAGKQALKKLAAEQMRLLYVALTR 879
Query: 887 SEKKLYLVG--KGSQEKLGD-QYDGKSENNHLPVADREHYLTFQDWL------------- 930
+E++L++VG K E L + +SE+ L R F DW+
Sbjct: 880 AEQQLFIVGSYKDKNEALSKWKKATQSESLVLNAGIRASVRNFMDWIGMCLTRSEIFKEV 939
Query: 931 ----LAIEAAYAAD-ELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRA 985
A E Y + + F+ F +++DL + + E +++ LK + + +
Sbjct: 940 DDTVDAKEPEYIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPLEIN 999
Query: 986 LDMLEAVEKLNQHY---KAAIHLPTVRTPSQIKK-FYEPVMETEGVEVMQTSYQ------ 1035
++K+ Q ++ + S +K+ F +P + ++ ++ +Q
Sbjct: 1000 DKQYRIIDKILQSKYPNESLAKTTAYQAVSDLKRAFDDP--DNNMMQSLEIDWQDQVPQG 1057
Query: 1036 ----TKPKFELPQF-SKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELS---- 1086
+ + LP+F + K K P +G + H L+Q+L L ++V+LE+++ LA+L
Sbjct: 1058 INRYVQNELSLPKFMTTKVKVSPAQVGIATHLLLQKLPLDDEVTLEELMQLLAQLVEDKL 1117
Query: 1087 VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML--------QADPASGED 1138
+ V K I +++I F+ TS LG+ + N DKV RE PFAM+ D +
Sbjct: 1118 ITSEVAKEINLNQIKVFY-TSDLGRKVLKNKDKVKRELPFAMIIPAGRLFSNVDNDVEQP 1176
Query: 1139 YVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYN 1191
+V GIIDG I D+ +++FDYKTD T+ + E YRGQ+ LYA A+ N
Sbjct: 1177 ILVHGIIDGLIELDDEVIIFDYKTDHHTSEDKLIENYRGQLNLYAMAVESMLN 1229
>gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
brevis ATCC 367]
gi|116100166|gb|ABJ65315.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
brevis ATCC 367]
Length = 1262
Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats.
Identities = 405/1281 (31%), Positives = 648/1281 (50%), Gaps = 132/1281 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
TP Q +AI+ +G N+LVSASAGSGKT V+++R+++++ GV IDQ+ I TFT AA E++
Sbjct: 8 TPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMR 67
Query: 89 ERLEKKITEQLRLTN-DTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
ER++ + ++L ++ D+A +QF QL L ADI T+DAF +L+ +Y Y + + P F
Sbjct: 68 ERIQTALRQELAVSQGDSAQQQFYLRQLNQLPVADISTLDAFCLRLLQRYYYVIDLDPVF 127
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R+L D++E LL+++V+ DL D D + LF +L NF+G+R D ++ + Y F
Sbjct: 128 RLLADETENGLLRDEVWADLREDLYANDDSGLFARLTENFSGDRNDQG-LADLVQQTYTF 186
Query: 208 SQATDNPQRWL--LENFLKGANTYKDFSAIPEQEVKDFLNTLQETALA-LRDVTDLEDYK 264
+ AT NP WL L + + ++ +Q ++ F + + A L L +
Sbjct: 187 ANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQADLTSAQALANQA 246
Query: 265 QVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA-TLIPSGNDVTVAG 323
+ + A ++ ++QL + DS + L D A +P+ V
Sbjct: 247 GLDKQAAHVTAVLENVAAVQQL----VTGDSW---NALRAAIQDFAWGRMPA---VRKTN 296
Query: 324 VKYPVFRSLHSRL-----RGLKHLETIFKYQDQSLPLLQVLQSFTL---------DFSKQ 369
YP++ L + + L L+ + QD+ + + +S L F
Sbjct: 297 EDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAFRTA 356
Query: 370 YLQAKMQENAFEFSDIAHFAIQIL-EENDAIRQLYIDKYH---EVMVDEYQDNNHTQERM 425
Y Q K + + +F+D+ H A+ IL +++D RQ+ H E+MVDEYQD N QE +
Sbjct: 357 YRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQEAI 416
Query: 426 LELLSNGR---NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQ 482
L ++ N FMVGD+KQSIYRFRQADP +F K + G+LI+L ENFRS
Sbjct: 417 LTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAENFRSM 476
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET---QVLIYDTKDQQ 539
V D TN +F LMD +GEI Y QL G+S YP T ++L+Y T+D
Sbjct: 477 KNVDDFTNLIFKQLMDRELGEIDYTGAAQLKFGASY----YPDTVTSTAELLVYLTEDAP 532
Query: 540 ----NQDLAVEDDSNQIS---LGEVKLVAKEIIRL-------HNEEKVQ-----FEDITL 580
+ D D + Q+ GEV +V ++I +L ++ E Q + DITL
Sbjct: 533 ESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQVRPMTYGDITL 592
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
L +RT N I GIP+V + +NY K+ E+ +M+ L+ IDNP D L A+L
Sbjct: 593 LTPTRTNNLIITDELRRLGIPVVVNDA-RNYFKTTEIQIMMALLQIIDNPYQDIPLAAVL 651
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
RSP+ +E++LA L + + Q + + Q Q +A+ K+ F E
Sbjct: 652 RSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQ---QAVYQKVSHFLEQ 708
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
+R+ + + L LIW+IY + + DYVG +P EQRQANL+AL RA ++E++ FKG
Sbjct: 709 LQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFKG 768
Query: 761 LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
L +F+R ++++ E +DLA V +AV++MTIH SKGLEF VFI++ ++F+ QD
Sbjct: 769 LFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFNKQDQ 828
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
++S + G+GI Y L P +V +L + + + A+L+E+MR L
Sbjct: 829 QGNYVMSGKTGIGIDY-----------LDPDSRVKAPSLQKLVTAQAISRASLAEEMRKL 877
Query: 881 YVAMTRSEKKLYLVGK-GSQEKLGDQYDGKSENNHL----PVADREHYLTFQDWL----- 930
YVA+TR+E ++Y+VG +QE ++ ++ +L + ++ + DW+
Sbjct: 878 YVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLV 937
Query: 931 ----LAIE--------AAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQ 978
A E + A D F F+T DL + + E A D
Sbjct: 938 RDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVN---ETAVDWLQAASETA 994
Query: 979 SDDITRALD--MLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE-PVMETEGVEVMQTSYQ 1035
+ T +D L + ++AA ++ S+ K+ +E P T G + Q
Sbjct: 995 AKVTTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQ 1054
Query: 1036 ------TKPKFELPQFSKKAKQD-PTALGSSVHELMQRLHLSEQVSLEDILTALAELSVE 1088
F P F + ++ T +GS+ H ++Q+L ++ +L+ + + +L +
Sbjct: 1055 VGGHRFVTHDFARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVAD 1114
Query: 1089 E----NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY----- 1139
+ V + IQ + IL FF +S +G+ + A D+++RE PF++L + +D+
Sbjct: 1115 QVLTAEVAQRIQPELILRFF-SSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDS 1173
Query: 1140 --VVRGIIDGYILFDNRIVLFDYKTD------KFTNSQAIKERYRGQMTLYAQALSQSYN 1191
+V GIIDGY+ ++LFDYKTD + + + I ERY GQ+ LYA AL Q
Sbjct: 1174 QVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTG 1233
Query: 1192 IQQVDSYLILLG-GEKLEVVE 1211
V YL LL GE + V E
Sbjct: 1234 QPIVGQYLYLLAIGELVAVPE 1254
>gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO]
gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO]
Length = 1240
Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats.
Identities = 401/1272 (31%), Positives = 657/1272 (51%), Gaps = 143/1272 (11%)
Query: 24 KKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKA 83
+ ++ T +Q +AI+ G N+LVSASAGSGKT V++ R+++K+ G ID+L I TFT A
Sbjct: 9 QNERFTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAA 68
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+KER+++ + E + +D +Q ++QL+ L TA+I T+ AF ++ +Y Y + I
Sbjct: 69 AREMKERIQEALQEAVNSESDPVRRQHFTKQLVLLPTANISTLHAFCLTVIRRYYYLIDI 128
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FR+L D++E L+K DV+D+L + + E F +L NF+ +R D +++
Sbjct: 129 DPVFRMLTDETETILMKEDVWDEL-REALYAENDERFFQLTMNFSNDRSDDG-LTNLVFS 186
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD-LED 262
+Y+F++A +P++WL D +PE K L Q L L D+ ++
Sbjct: 187 LYEFARANPDPKKWL--------EQLSDNYRLPEGLAKSRLYQEQIRPLVLADIYQCVQL 238
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVA 322
Y+Q+T + H ++ + Q + + + +D L + + L S T
Sbjct: 239 YEQMTQLAQGEGLEKMHEQVAGE-QQQIKNIYEAFSQDRLEEAYAGLEQLTFS----TFK 293
Query: 323 GVKYPVFRSLHSRLRGL-----KHLETIFK------------YQDQSLPLLQVLQSFTLD 365
+ + + + ++G+ K ++ I K D++LPL++ + T
Sbjct: 294 SSRKAELKEISNEVKGMRDKAKKLIQQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQS 353
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL-------YIDKYHEVMVDEYQDN 418
F + K ++ +F+D+ H A+QIL E L Y K+ EVMVDEYQD
Sbjct: 354 FMDGFSMRKREKGVLDFNDLEHLALQILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDV 413
Query: 419 NHTQERMLELL----SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLIL 474
N QE +L L N FMVGD+KQSIY FR ADP +F K+++F + E G+ I+
Sbjct: 414 NQLQEAILYWLREPDDTKGNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-EGGRRIV 472
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET---QVL 531
L ENFRS+ EVL TN +F LMD AVG+I YD+ +L+ G S +P+NE +++
Sbjct: 473 LAENFRSRKEVLSFTNLIFEQLMDPAVGQINYDEAAKLIQGFS----DFPENEQFEPEIM 528
Query: 532 IYDTKDQQNQDLAVEDDS-NQISLGEVKLVAKEIIRL------------HNEEKVQFEDI 578
IY+ + ++++ DD + GE+ + +I +L ++++DI
Sbjct: 529 IYEKEQEESEIEIPTDDILEDKTEGELFMTGLKIRQLIDSSFMIYDKKSKKSRPIEYKDI 588
Query: 579 TLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVA 638
LL ++ N IL+ F IPL QNY ++ E+ M+ L+ IDNP D L A
Sbjct: 589 VLLTPTKKNNLTILEIFKTLDIPLEMKDA-QNYFQATEIRTMISLLQLIDNPYQDIPLAA 647
Query: 639 LLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFF 698
+LRSP+ E +LA + L + + + Y A + + L+AKL+ F
Sbjct: 648 VLRSPIVGLIEPELASIRLAD-----RAHTYYDAVLAYQASNE------DELAAKLEHFG 696
Query: 699 ETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGF 758
+ WRE + +S+ DL+W IY + Y +YV LP QRQANLYAL RA +E++ F
Sbjct: 697 KQLEHWRELARRSSITDLLWDIYYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSF 756
Query: 759 KGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ 818
+GL +F+R I+K+ E DLA+ +++ NAV +MTIH SKGLEF VF+L++ K+F++Q
Sbjct: 757 RGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQ 816
Query: 819 DMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMR 878
D+ + + G GI+Y+ P +V DTLP+Q K + LSE+MR
Sbjct: 817 DLRNRYAFEEKLGAGIRYMD-----------PETRVLYDTLPFQAIKLVKQNKLLSEEMR 865
Query: 879 LLYVAMTRSEKKLYLVGK-GSQEKLGDQYDGKSENNHL---PVADREHYLTFQDWL---- 930
LYV +TR+E+KL++VG ++E++ + +++ L P + + +W+
Sbjct: 866 KLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGL 925
Query: 931 --LAIEAAYAADEL----------HFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQ 978
Y +E+ F S++ + + E + E E NL D +
Sbjct: 926 IRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELV----NL-DQQM 980
Query: 979 SDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQ--- 1035
+D T D L+ Y+A+ + ++ S+IK+ +E +T+ + S Q
Sbjct: 981 KEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKA 1040
Query: 1036 -------TKPKFELPQFSKKAKQ-DPTALGSSVHELMQRLHLSEQVSLEDILTALAELS- 1086
T+ + P+F +K +Q A+G++ H L+Q L L E + E I L EL
Sbjct: 1041 ASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQLLPL-EMPTTESIHQKLQELVR 1099
Query: 1087 ---VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML-------QADPASG 1136
V+E V K + V I+ FFQT +LG+ + AN + V RE PF+ML Q P
Sbjct: 1100 KRLVDEKVAKKVDVSSIIWFFQT-ELGQQLIANKENVKREQPFSMLLPADEVFQDYPNQE 1158
Query: 1137 EDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYAQALSQSY 1190
++ ++ GI+DGY+ + + ++D+KTD + AI ++Y+GQ+ LY QA+S++
Sbjct: 1159 DELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDAIVQKYQGQLRLYQQAMSEAL 1218
Query: 1191 NIQQVDSYLILL 1202
N + +LILL
Sbjct: 1219 NKPVENVFLILL 1230
>gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583]
gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583]
Length = 1264
Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats.
Identities = 423/1279 (33%), Positives = 651/1279 (50%), Gaps = 142/1279 (11%)
Query: 26 QKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAG 85
++ T Q +A++ NILVSASAGSGKT V++ R+++K+ GV ID+L I T+T AA
Sbjct: 12 EQFTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAR 71
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KER++ + + + D ++ S Q+ L TA+I T+ AF ++ ++ Y + I P
Sbjct: 72 EMKERIQVALQKAMNEEQDPERRRHFSRQIALLPTANISTLHAFCLTVIRRFYYLIDIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FR+L D++E LLK DV+D L + +Q E F +L NF+ +R D +I+ Y
Sbjct: 132 VFRMLTDETETLLLKEDVWDALREQFYAENQ-EAFYQLTANFSNDRSDDG-LTNLIFSFY 189
Query: 206 DFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQ 265
+F++A +P+ W+ N L A D E K F L+ A+ T L+ Y++
Sbjct: 190 EFAKANPDPEAWI--NGLTQAYEVGDQLG----ESKLFQTYLKPLAVETLQRT-LQRYEE 242
Query: 266 VTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAG-- 323
+ Q+ + + ++ F R+ L + A ++ L+ TV
Sbjct: 243 MVTLTEGEEKLQKIWYLAQNEKEQTKQFLQFLERNDL-ESAYNLTELLSFDRYPTVRAEE 301
Query: 324 VKYPVFRSLHSRLRGLKHLETIFK------------YQDQSLPLLQVLQSFTLDFSKQYL 371
+K ++ R + K L + K ++ P++Q + F + Y
Sbjct: 302 LKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYG 361
Query: 372 QAKMQENAFEFSDIAHFAIQILEENDA-------IRQLYIDKYHEVMVDEYQDNNHTQER 424
K +N +F+D+ H+ + IL +N A Y +K+ EV+VDEYQD N QE
Sbjct: 362 AEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQES 421
Query: 425 ML----ELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
+L LS N FMVGD+KQSIY FR ADP +F +K+ + + E GK I+L ENFR
Sbjct: 422 ILYWLRRPLSTEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQYGQGKE-GKRIILAENFR 480
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK---- 536
S+ +VLD TN VF+ LMDE VG+I YD++ LV G Q T++LIY+ K
Sbjct: 481 SRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFD-QFSEAADYSTELLIYEKKATES 539
Query: 537 ----DQQNQDLAVEDDSNQISLGEVKLVA---KEII---------RLHNEEKVQFEDITL 580
+ Q+ +L +ED + GE+ + A +E+I +L + + ++DI L
Sbjct: 540 VEFPELQSPELLIEDKTE----GELYVTALKIRELIDQNFLIYDKKLKTDRPITYQDIVL 595
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
L ++ N IL F IP+ + QNY ++ E+ M+ L+ IDNP D L A+L
Sbjct: 596 LTPTKKNNLTILDVFKSLEIPVQVNDA-QNYFQATEIRTMIALLQLIDNPYQDIPLAAVL 654
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
RSP+ E++L + L N K+ Y + N Q + + + K F E+
Sbjct: 655 RSPIVGLKENELVLIRLAN-----KETSYYEAFLTFN-QKMEPTMEEAVVQEKTIRFAES 708
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
WRE + N + +L+W IY + Y DYVG LP +QRQANLYAL RA +EKT F+G
Sbjct: 709 LEKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRG 768
Query: 761 LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
L +F+R I+K+ E DLA+ V +NAV +MTIH SKGLEF VF+L++ K+F++ D+
Sbjct: 769 LFQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDL 828
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
I GVGI+Y L P +V DTLP+ K+ LSE+MR L
Sbjct: 829 NERYIFEENLGVGIRY-----------LQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKL 877
Query: 881 YVAMTRSEKKLYLVGK-GSQEKLGDQY--DGKSENNHLPVADR-EHYLTFQDWL-LAIEA 935
YVA+TR+E+KL+LVG Q + ++ G E LP +R + + +W+ + +
Sbjct: 878 YVALTRAEQKLFLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVR 937
Query: 936 AYAADEL-----------------HFKTSFITDEDLTED-KMGSLEAEQAYDADNLKDNR 977
ADE +F + +E L + L QA D K
Sbjct: 938 HQKADEYQQEVVVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAE-KAQL 996
Query: 978 QSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETE--GVEVMQ-TSY 1034
+D I R L L N ++ A + ++ S+IK+ ++ E +EV + +
Sbjct: 997 SADKINRGLARLS----FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTI 1052
Query: 1035 QTKP---------KFELPQFSKKAKQDPTA--LGSSVHELMQRLHLSEQVSLEDILTALA 1083
Q +P P+F Q P+A +G++ H L+Q + LS+Q S E++ A+
Sbjct: 1053 QAQPLIVNRMIEGDLSKPKFLDTV-QAPSAAEIGTATHYLLQLIDLSKQPSYEEV-RAVQ 1110
Query: 1084 ELSVEEN-----VKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML-------QA 1131
E VE + + + +++I+ FF T+ LGK + + V RE PF+ML Q
Sbjct: 1111 ERLVENKLILPAIAEKMNLEQIVAFFDTA-LGKQLIQHHQTVRREQPFSMLIEAEELIQN 1169
Query: 1132 DP-ASGEDYVVRGIIDGYILFDNRIVLFDYKTD--KFTNSQAIK---ERYRGQMTLYAQA 1185
P + +D ++ GIIDGYI DN+ +L+DYKTD K T+ QAI ERYRGQM LY +A
Sbjct: 1170 YPETTQDDLLIHGIIDGYIELDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRA 1229
Query: 1186 LSQSYNIQQVDSYLILLGG 1204
L ++ + + YLILL G
Sbjct: 1230 LQEATHKEVSHVYLILLNG 1248
>gi|116493558|ref|YP_805293.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pediococcus
pentosaceus ATCC 25745]
gi|116103708|gb|ABJ68851.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pediococcus
pentosaceus ATCC 25745]
Length = 1235
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 399/1261 (31%), Positives = 631/1261 (50%), Gaps = 122/1261 (9%)
Query: 26 QKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAG 85
++ T Q +AI +SG NILVSASAGSGKT V++ER++ KI+ G +D+L + TFT AA
Sbjct: 4 REYTLSQKQAINSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAS 63
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KER+ I +++ +D L+ S QL L A+I T+ AF ++ Y Y + + P
Sbjct: 64 EMKERIRAAIVKKINEVSDIELQNHFSMQLNKLNNANISTLHAFCMSIIRNYYYIIDLDP 123
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI+ D +E +LLK V+ DL + D+ F L RNF+ +R D + +I +++
Sbjct: 124 TFRIM-DPTESELLKESVWADLREELYERDEDGKFALLTRNFSSDRSDEG-LQDLILELF 181
Query: 206 DFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDF-----LNTLQETALALRDVTDL 260
+FS A +PQ WL + A Y+ +P V D L T +T L DL
Sbjct: 182 EFSNANPDPQAWLQQI----AKNYE----VPSDNVMDMEFIQQLLTEVKTKLMRIYRKDL 233
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGR-DGLGKLANDIA-TLIPSGND 318
+ +Q G P K ++ D DSL G D + + + + +P G
Sbjct: 234 DLTEQAINGGEPLKNAAE--KFQNEVDDLKTIIDSLNGSWDDVQQAVSKMKFAQLPRGKK 291
Query: 319 VTVAGVKYPV----------FRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
V F ++ + L + I ++D ++++++ F++
Sbjct: 292 EEVQEFNAYAKSIRNDFKDEFNTIADKYFKLSSEQMIAVFKDAHDLMMKLIEVQN-QFAE 350
Query: 369 QYLQAKMQENAFEFSDIAHFAIQIL----EENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
++LQ K+ + +FSD+ HFA+QI+ EE AIR+ + K++EV+VDEYQD N QE
Sbjct: 351 RFLQEKLTRRSLDFSDLEHFALQIVLDDSEEGQAIRRDFQQKFNEVIVDEYQDINPLQET 410
Query: 425 MLELLSNGR--NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQ 482
+L +++ N FMVGD+KQSIY FR ADP +F K F++ + + I+L ENFRS
Sbjct: 411 ILTSVASPDPGNMFMVGDVKQSIYAFRMADPSLFISKNNQFKDEEQADERIILAENFRSM 470
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYP---QNETQVLIYDTKDQQ 539
V D TN +F +MD VGEI YDD QL G+ YP QN T+V+IYD
Sbjct: 471 RNVDDFTNLIFNQVMDTEVGEIEYDDDAQLQFGAKY----YPDEVQNNTEVMIYDDSQTD 526
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRL---------HNEEK---VQFEDITLLVSSRTR 587
D + + G+++++A+ I +L E+K +++ DI LL S+ +
Sbjct: 527 INDKEATPIISNKNDGQLQMIAQRIQKLFADHTQIYDKKEQKMRDLEYSDIALLHSTGSN 586
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
N I+ TF YGIP+ + Q+Y ++ EV +M+ L+ IDNP D L A+LRSPM
Sbjct: 587 NLEIVDTFKKYGIPIQVNNA-QDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPMVGL 645
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
E++LA L + + + L + A+ + Q+ L K+ F E + +
Sbjct: 646 KENELAFLRIGKKNGHYFEALLYFLNEAKLDSNNEFQM---QLKTKITHFLEQLDHFSKL 702
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ ++L DL+W IY++ Y DYVG +P QRQ NL+AL RA +E++ FKGL +F+R
Sbjct: 703 ARQSTLVDLLWAIYDETGYLDYVGGMPDGPQRQNNLHALYDRAKGYEESSFKGLFQFVRF 762
Query: 768 IDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
++K+ + DLA+ V AV LMTIH SKGLEF VF+++ + F+ D +L
Sbjct: 763 VEKMRDKNKDLAENPVVTDVKAVKLMTIHGSKGLEFPIVFLIDAEHGFNTMDEKGRYVLD 822
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
R G+GI + D LE +DT+ + L+E++R+LYVA+TR+
Sbjct: 823 RDAGMGIT-LKDFIHRLE----------IDTVQKNWIISIKKQKALAEKLRVLYVALTRA 871
Query: 888 EKKLYLVG-----KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWL--------LAIE 934
E+KL + G + K + D ++ +P R F DW+ +E
Sbjct: 872 EQKLIITGAVNSADDTLNKWAEAVD--TDETLIPAEARSKVSNFLDWIGMAIMRVPSVVE 929
Query: 935 AAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDA------DNLKDNRQSDDITRALDM 988
+ + + I D +L L +Q A L+ DDI +D
Sbjct: 930 KYADYNTRKLQGTLIPDVELKIINSSELMDQQGLTALKSAQIPELQQLNAFDDIAD-VDK 988
Query: 989 LEAVEKLNQHYKAAIHLPTVRTPSQIKK-FYEPVMETEGVEVMQTSYQTKPKFEL----- 1042
+ + H +AA ++ S+IK+ F +P + KP+
Sbjct: 989 FKQIMNFKYHDEAATTTTAYQSVSEIKRVFDDPDKFELNFSEVDADQHIKPQNRFVTESL 1048
Query: 1043 --PQFSKKAKQDPTA-LGSSVHELMQRLHLSEQVSLEDILTALAELS----VEENVKKAI 1095
P+F +A + A +G++ H ++Q+L L++ ++ I + EL ++E V I
Sbjct: 1049 MAPRFMNEATKPKAAEIGTATHLILQQLDLNQPINETIIKDKIGELVMNRVLDEQVANRI 1108
Query: 1096 QVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASG--------EDYVVRGIIDG 1147
++ IL FF S LG+L+ + + V+RE F++L PA G +D ++ GIID
Sbjct: 1109 RISTILDFFD-SDLGQLMINHPENVHREEAFSLLL--PAKGLFPKVKGDDDVLIHGIIDA 1165
Query: 1148 YILFDNRIVLFDYKTDKF---TNSQAIKE---RYRGQMTLYAQALSQSYNIQQVDSYLIL 1201
Y ++R++L DYKTD + Q I++ RY+GQ+ LYAQAL + YL L
Sbjct: 1166 YFEMEDRVILLDYKTDFVLPGSVEQGIEKVINRYQGQVNLYAQALGSILKRPVNEKYLYL 1225
Query: 1202 L 1202
L
Sbjct: 1226 L 1226
>gi|116490406|ref|YP_809950.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Oenococcus oeni
PSU-1]
gi|116091131|gb|ABJ56285.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Oenococcus oeni
PSU-1]
Length = 1186
Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats.
Identities = 390/1234 (31%), Positives = 623/1234 (50%), Gaps = 136/1234 (11%)
Query: 42 NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRL 101
N+LV+ASAGSGKT V+IE + ++L G +ID+ ISTFT AA E+K RLEK+I +
Sbjct: 18 NLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMKNRLEKRIRAGIT- 76
Query: 102 TNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKN 161
+ LK+ L EQLL L +A IGT+D+F+ +++ +Y +G+ P +R+L D++E++LL
Sbjct: 77 EEEGQLKRHLQEQLLLLNSAAIGTLDSFSLRIIERYYSVIGLDPRYRMLADQTEKNLLVK 136
Query: 162 DVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWL--- 218
DV DD F + E F +L+ NF+ D + + ++ K+ ++ NP WL
Sbjct: 137 DVLDDTFDEMY---HDEKFLRLLNNFSSASHDQ-DLKNLVIKLNTMAETRANPDFWLDSI 192
Query: 219 LENF-LKGANTYKDF--SAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAA 275
EN+ L G T F + Q L + A + V DLEDY A
Sbjct: 193 AENYRLSGGLTKGSFWKELLQPQIFNRASAALYQLLSAKKGVEDLEDYHSYIAYLADAVG 252
Query: 276 YQRHLKMI------EQLQDWVLHFDSLYGRDGLGK-------LANDIATLIPSGNDVTVA 322
R + +Q+ D+ ++ GK N I I D
Sbjct: 253 LVRGFIEVCSQNNWQQMSDYFVNNSWPKSARKSGKNEQEADYFDNWIKPWIKEAKDS--- 309
Query: 323 GVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEF 382
+RS+ S L + + ++SL +++ L T F K++ K + + +F
Sbjct: 310 ------YRSIESDFLFLNESQWL-DISEKSLGVVEELIRLTKVFRKKFALKKRELSLLDF 362
Query: 383 SDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIK 442
SD FA QIL+ N +R+ + EV+VDEYQD N QE +L +SNG N FMVGD+K
Sbjct: 363 SDGEQFAYQILQ-NQTVREEIQSLFDEVLVDEYQDINDLQENILTDVSNGSNFFMVGDLK 421
Query: 443 QSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVG 502
QSIY FRQADP F+ K+ ++E G+LI L EN+RSQ V D TN+VF LMD +G
Sbjct: 422 QSIYGFRQADPVNFSNKYIQYKEG-NGGELIELSENYRSQHNVADFTNAVFRKLMDRKLG 480
Query: 503 EILYDDTHQLVAGSSAQKIPYPQNETQVL---IYDTKDQQNQDLAVEDDSNQISLGEVK- 558
I Y +L A + YP+N V I+D ++ N+D QI + K
Sbjct: 481 GIDYRGDVELKAANR----DYPKNLKNVADISIFDIDEESNEDEDFNSRQAQIEIIAAKI 536
Query: 559 --LVAKEIIRLHNEEKVQ---FEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
LV + I K++ + DIT+L S + + I F Y IP+ G N+L+
Sbjct: 537 QALVGQSEIYDRQSGKMRPLVYRDITILERSHSWENDIQTIFKKYHIPINVAAG--NFLQ 594
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
EV ++L L+ IDNP D LVA+LRSP++ DE+ LA + ++ K + + ++
Sbjct: 595 EFEVSIVLSFLKIIDNPHQDIPLVAVLRSPIYGLDENQLAEIRTADM----KHDYFSALQ 650
Query: 674 N-ARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGS 732
A+ GQ +Q K+ AF ++RE + N + DLIW+IYND + +YV
Sbjct: 651 AYAKTGQDLDLQ-------KKMAAFLVQLENYREIAADNQIVDLIWQIYNDTNWPEYVAG 703
Query: 733 LPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTL 792
+ QRQANL+AL A F GL FIR +++++++ D A V + + AV++
Sbjct: 704 MVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLMDSVEDFAQAPVDMGQEAVSV 763
Query: 793 MTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTV 852
MTIH +KGLEF VF+LN+DK+ +D +++ NG+GI ++ PT
Sbjct: 764 MTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIGIDFVH-----------PTS 812
Query: 853 KVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSEN 912
+V + T+ +++ +E+MRLLYVA+TR+E++LYLV GS +++ D N
Sbjct: 813 QVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLV--GSSKRMSDLI----HN 866
Query: 913 NHLPVA---------DREHYLTFQDW------------LLAIEAAYAADELHFKTSFITD 951
PV+ DR ++Q W L +E Y+ +L FK
Sbjct: 867 WGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKI----- 921
Query: 952 EDLTEDKMGSLEAEQAYDADNLKDNRQSD---DITRALDMLEAVEKLNQHYKAAIHLPTV 1008
E + + +A +K N Q + D+ R+ +L+ N YK L
Sbjct: 922 ESYNAQTIPKIVENKA----KIKQNEQEETGIDLARSKKILD----YNYPYKIESELAAY 973
Query: 1009 RTPSQIKKFYEPVMETEGVEVMQTSYQTKPKF-ELPQ-----FSKKAKQDPTALGSSVHE 1062
S++K+ +E + + + + + + +P+ ELP+ + + + T G++ H
Sbjct: 974 HNVSELKRVFE---DPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHL 1030
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYR 1122
+++++ +++ + + + E ++ +++I++D+I+ +F S+ G I+ +A + R
Sbjct: 1031 ILEKIDWKKEIDKDYLQQLIKENIPDQKTRQSIELDRII-WFANSEFGTEIKKSASTLKR 1089
Query: 1123 EAPFAML------QADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS--QAIKER 1174
E FAML + + +V GIIDGY + D I LFDYKTD+F +KER
Sbjct: 1090 EQTFAMLIPAKQIYQQVETSDPVLVHGIIDGYFISDGLITLFDYKTDRFGKDYVSKLKER 1149
Query: 1175 YRGQMTLYAQALSQSYNIQQVDSYLIL-LGGEKL 1207
Y GQ+ LYA ALS Y +V+ +++ L G++L
Sbjct: 1150 YSGQLNLYAAALSSIYPNLKVERKVVVGLQGKRL 1183
>gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
casei ATCC 334]
gi|116105123|gb|ABJ70265.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
casei ATCC 334]
Length = 1234
Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats.
Identities = 401/1263 (31%), Positives = 614/1263 (48%), Gaps = 137/1263 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T Q AI G ++LVSASAGSGKT V++ERI+ KIL+ I ++ I TFT A E+
Sbjct: 5 TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64
Query: 88 KERLE---KKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGIS 144
+ +++ KK + R ++ L+ Q+ + A I T+DAF+ ++V Y Y + +
Sbjct: 65 RTKIQTALKKALTERRHELSGEDRRHLANQIAMVNAAKISTLDAFSLQIVQTYYYVIDLD 124
Query: 145 PNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
P FR+L D++E+ +L+ V+DDL D+A F +L NF+G+R D S + +++++
Sbjct: 125 PGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLTANFSGDR-DDSGLQDLMFEL 183
Query: 205 YDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLED-- 262
+ AT +P+ +L E K + +Q L + A +L + L +
Sbjct: 184 IRQAGATTDPKAYL-EGLATPYAPEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQL 242
Query: 263 -----YKQVTA----------KGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAN 307
Y+Q+ A PT R + + + W G D K
Sbjct: 243 PNPIWYQQIQADLAPLQTLLETNAPTYDTVRSVLISHEFAAWS---RISKGLDDADKDTK 299
Query: 308 DIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFS 367
+ A + T P F +L + E I ++ PL+ L + L F
Sbjct: 300 NAAKDLRDAAKKTWQNKLAPTF-ALAA--------EQIGDLLREAQPLVATLANVALKFE 350
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDA-----IRQLYIDKYHEVMVDEYQDNNHTQ 422
K + ++SDIAH A++IL++ D I Y + EVMVDEYQD + Q
Sbjct: 351 DALTAEKAARHVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQ 410
Query: 423 ERMLELLSNGR--NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHG---KLILLKE 477
E +L +S +RFMVGD+KQSIY FR ADPQ+F K++ FQ+ P + I+L E
Sbjct: 411 EALLAAVSTTTPGDRFMVGDVKQSIYGFRLADPQLFIHKYQTFQDAPTDPAAPERIILAE 470
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYD--T 535
NFRS VL TN +F+ +MD VG++ YD+ L G+ +P +VL+Y T
Sbjct: 471 NFRSTKNVLAFTNLIFSQIMDPEVGDLSYDNAAALKYGALDYGDAHPA--VKVLLYSKAT 528
Query: 536 KDQQNQD---LAVEDDSNQ---ISLGEVKLVAKEIIRLHNE-------------EKVQFE 576
D+ + D L + D N+ I+ G+ +LV EI RL N+ ++ +
Sbjct: 529 SDEDSSDASELPGDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYR 588
Query: 577 DITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYAL 636
DITLL ++N I F G+PL +N+ K+ E+MVML L+ IDN D L
Sbjct: 589 DITLLTRQTSQNSLIQTQFAAAGVPLFV-ADTKNFFKTTELMVMLALLKVIDNQKQDIPL 647
Query: 637 VALLRSPMFAFDEDDLA--RLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKL 694
VA+LRSP+ D LA RLA + +P + Q + + + L
Sbjct: 648 VAVLRSPIVGLSADQLALIRLAAKQVPYYDAVTAFL--------QAEPKTPLAQRTHDML 699
Query: 695 DAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFE 754
FF +R+ + N L L+W IY D + DYVG P QRQANL AL RA +E
Sbjct: 700 THFFNQLSHFRDLARENDLVTLLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDRARTYE 759
Query: 755 KTGFKGLSRFIRMIDKILENQNDLADVEVALPKN-AVTLMTIHKSKGLEFKYVFILNIDK 813
GFKGL FI I + + DLA P N AV LMTIHKSKGLEF VF++ +K
Sbjct: 760 AGGFKGLFAFIHFITLMQKQDQDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVVFLMQANK 819
Query: 814 KFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATL 873
F++ D T IL++Q G+GIK+ L P +V + YQ K + TL
Sbjct: 820 HFNMSDQTGTAILTKQ-GIGIKW-----------LDPETRVEYELPQYQAAKAARQNQTL 867
Query: 874 SEQMRLLYVAMTRSEKKLYLVGK-------GSQEKLGDQYDGKSENNHLPVAD--REHYL 924
+E+MRLLYVA+TR++++LY+VG S +K +++ +E +A R
Sbjct: 868 AEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWAAAAEGEARVLAPQVRSGAT 927
Query: 925 TFQDW----LLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSD 980
++ DW L+ A E K + + DE TE + Q + SD
Sbjct: 928 SYLDWIGPALIRHPQARGLAETTIKPALVGDE--TEFTIEIDVNPQV--TPTATPEKVSD 983
Query: 981 DITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPK- 1039
D +D L A K ++AA ++ S+IK+ ++ + + ++++ PK
Sbjct: 984 DSGTMVD-LSAWFKKAYPFQAATTTTGFQSVSEIKRAFD---DPDTIDLVNADRFLGPKP 1039
Query: 1040 ----FELPQFSKKAKQ--DPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE---- 1089
P F + P A+G++ H L+Q + L++ +++ + +L+ +
Sbjct: 1040 PMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALRDQLTTTQVIAV 1099
Query: 1090 NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM----------LQADPASGEDY 1139
+V K I + ++ FF+T LG+L+ A +V+RE PF+M L DP GED
Sbjct: 1100 DVAKHIDLTALIRFFETD-LGRLLLAKPQQVHREVPFSMLLPADQVFEALADDP--GEDV 1156
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
++ GIIDGY+ + + LFDYKTD N+ + +RYRGQ+ LYAQAL + YL
Sbjct: 1157 LIHGIIDGYVSDEQGVTLFDYKTDHNPNTAVLVDRYRGQLNLYAQALQDLQPKPVLHRYL 1216
Query: 1200 ILL 1202
+ L
Sbjct: 1217 VFL 1219
>gi|16078127|ref|NP_388944.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
subtilis str. 168]
gi|113345|sp|P23478|ADDA_BACSU ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis]
gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis]
gi|2633399|emb|CAB12903.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
subtilis str. 168]
Length = 1232
Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats.
Identities = 390/1261 (30%), Positives = 644/1261 (51%), Gaps = 163/1261 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q AI ++G +ILV+A+AGSGKT V++ER++ KI + +D+L + TFT +A
Sbjct: 12 TDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAA 71
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + ++L + +L + QL L A I T+ +F +++ +Y Y + + P
Sbjct: 72 EMKHRIAEALEKEL-VQRPGSLH--IRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDP 128
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
FRI D++E +L+ ++V D+LF D Y G++A F +LV + +R D + + ++ ++
Sbjct: 129 GFRI-ADQTEGELIGDEVLDELFEDEYAKGEKA--FFELVDRYTTDRHDL-DLQFLVKQV 184
Query: 205 YDFSQATDNPQRWLLENFL-------KGANTYKDFSAIPEQEVKDFLNTLQETALALRDV 257
Y++S++ NP+ WL E+F+ K A F ++++ LN +E L ++
Sbjct: 185 YEYSRSHPNPEAWL-ESFVHLYDVSEKSAIEELPFYQYVKEDIAMVLNGAKEKLLRALEL 243
Query: 258 TDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLH---FDSLYGR--------------D 300
T A G P L + Q+ + + H F LY R D
Sbjct: 244 T--------KAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVKGD 295
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVF-RSLHSRLRGLKHLETIFKYQDQSLPLLQVL 359
D AT + +G + +K F RS L+ L ++ P+++ L
Sbjct: 296 EFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMK----------PVIETL 345
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILE-ENDA-------IRQLYIDKYHEVM 411
+ + K++ AK +++ +FSD+ H+ + IL END + Y +++HEV+
Sbjct: 346 VQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVL 405
Query: 412 VDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
VDEYQD N QE +L+L+++G N FMVGD+KQSIYRFR A+P +F K+K F E
Sbjct: 406 VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465
Query: 468 E-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN 526
E G+ I L +NFRS++++LD+TN +F LM +GE+ YD+ +L G++ YP N
Sbjct: 466 EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAA-----YPDN 520
Query: 527 ---ETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRL------------HNEE 571
ET++L+ D + ++ D + E + + E K +AKEI +L
Sbjct: 521 DETETELLLID--NAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHR 578
Query: 572 KVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631
+Q+ DI +L+ S I++ GIP+ + Y ++VEV V L L+ IDNP
Sbjct: 579 NIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANL-TSGYFEAVEVAVALSVLKVIDNPY 637
Query: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691
D L ++LRSP+ DE++L+ + L+N K YE M++ + ++ L
Sbjct: 638 QDIPLASVLRSPIVGADENELSLIRLEN----KKAPYYEAMKDYLAAGDR-----SDELY 688
Query: 692 AKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751
KL+ F+ WR FS +S+ +LIW++Y D Y DYVG +P +QRQANL L RA
Sbjct: 689 QKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRAR 748
Query: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILN 810
+E T F+GL RF+R I+++ E +DL ++ ++ V LMTIH SKGLEF VF+
Sbjct: 749 QYESTAFRGLFRFLRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAG 808
Query: 811 IDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRL 870
+ + F++ D+ +L ++ G G KYI P +++S TLP K+++R
Sbjct: 809 LGRNFNMMDLNKSYLLDKELGFGTKYIH-----------PQLRISYPTLPLIAMKKKMRR 857
Query: 871 ATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQ 927
LSE++R+LYVA+TR+++KL+L+G K Q++L S+ + LP DR T+
Sbjct: 858 ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYL 917
Query: 928 DWL------------LAIEAAYAADELH---FKTSFITDEDLTEDKMGSLEAEQAYDADN 972
D++ LA A+A H F I DL +D LE ++
Sbjct: 918 DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDD---DLEERMEEKSER 974
Query: 973 LKDNRQSDDITRALDMLE-AVEKLNQHY--KAAIHLPTVRTPSQIKKFYEPVMETEGVEV 1029
L+ R+ + + + E A E+L+ Y + + T ++ S+IK+ E E G
Sbjct: 975 LEAIRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAP 1034
Query: 1030 MQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELS--- 1086
++ + + P F K G+++H +MQ + LS S+E+ + L
Sbjct: 1035 VKPA-DGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE 1093
Query: 1087 -VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPA---------SG 1136
+ E K AI +++I+ FF T G+LI A RE PF++ A PA +
Sbjct: 1094 LLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKD--REIPFSL--ALPAKEIYPDAHEAD 1149
Query: 1137 EDYVVRGIIDGYILFDNRIVLFDYKTDKFTN---------SQAIKERYRGQMTLYAQALS 1187
E +V+GIID ++ + L DYK+D+ + +K+RY Q+ LY +A+
Sbjct: 1150 EPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVE 1209
Query: 1188 Q 1188
Q
Sbjct: 1210 Q 1210
>gi|116618575|ref|YP_818946.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097422|gb|ABJ62573.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 1230
Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats.
Identities = 402/1270 (31%), Positives = 624/1270 (49%), Gaps = 146/1270 (11%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K T Q AI G NILV+ASAGSGKT V+IER++ KIL GV++++ I TFT AA E
Sbjct: 4 KFTKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKE 63
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
++ERLE I ++L++ D + K+FL EQLL L A+I T+DA+ +++ Y + +G+ P
Sbjct: 64 MRERLEVAIEKRLKVA-DESQKRFLQEQLLILPAANISTIDAYALRIIEMYYHIIGLDPQ 122
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGD--QAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
FR+L D +E+ LL+ DV D+ D+ + E F LV NF GN ++II K+
Sbjct: 123 FRLLSDTAERKLLQQDVLTDVLADFYDENNIHHEQFLTLVNNF-GNPNQDDQLQKIILKL 181
Query: 205 YDFSQATDNPQRWLL----------ENFLKGANTYKDFSAIPEQEVKDFLNTLQETALAL 254
DF++A + WL E A + I + +K+ + ++E L +
Sbjct: 182 SDFAEARADGNEWLEKLREPYEVTGEPLTATALYVRSIRPIILEIIKNLIKKVEEVQLTI 241
Query: 255 RDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGL-----GKLANDI 309
+ +L+ + + Q +L +I Q + V +D L R+ + GK+ N
Sbjct: 242 TGIDELKKTQDAFLE------IQDYLLLI-QDKAMVAPWDEL--REAILDTPSGKI-NSQ 291
Query: 310 ATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKH-----LETIFKYQDQSLPLLQ------- 357
I D++ V R + ++ G+K + + F ++S L+Q
Sbjct: 292 TKAIKEDPDLSAT---LEVARQIKGQVVGVKSQMNSLITSYFALDEKSWQLVQKESYKLI 348
Query: 358 -VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQ 416
L T F + + + K +E +F D+ A+ IL + D +Q ++ E++VDEYQ
Sbjct: 349 DTLILVTQAFRESFRRTKREEKLLDFPDLGTLALAILSD-DVTKQTIQGQFDEILVDEYQ 407
Query: 417 DNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLK 476
D N QE +L +SNG N +MVGD+KQSIY FRQA+P +F K+K F + I L
Sbjct: 408 DINQLQETLLTSVSNGHNMYMVGDVKQSIYGFRQAEPSLFTNKYKQFAKKESDDIRIDLA 467
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYD-T 535
+NFRSQ+ V + TN +FT +MDE +G+I Y +LV K YP + V D
Sbjct: 468 DNFRSQNNVTNITNLIFTQIMDETLGDIAYAGEAKLVP-----KAAYPDDVPAVFHMDII 522
Query: 536 KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNE------------EKVQFEDITLLVS 583
+ +DL + + + + L+A+ I++L V++ DI +L
Sbjct: 523 VEDAEEDLETDTEVFEKRQAQYALLAERILKLRETSIFDRKADPAGLRPVEYSDIAILTR 582
Query: 584 SRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
+++ ++ T GIP+ + G NY +++EV +MLD LR IDNP D L A+LRSP
Sbjct: 583 AKSGYIDLVSTLRAAGIPVQVE-GVGNYFQTMEVYLMLDILRVIDNPHQDIPLAAVLRSP 641
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+F FDE++LA + + + K + Y A Q Q+ Q F
Sbjct: 642 VFNFDENELAAIRIAD-----KMHDYWTALQAYAQQDQKAQ-----------NFLNLIEK 685
Query: 704 WREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSR 763
W + N L LIW IY+D + DYV +P QRQANL+AL A ++ GL R
Sbjct: 686 WHAIATQNDLVALIWAIYDDTAWLDYVAGMPGGAQRQANLHALYEYARTYQNNTHSGLFR 745
Query: 764 FIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSP 823
FIR I+++ +DL + AV +MTIH SKGLEF VF+ DK F+ QD+
Sbjct: 746 FIRYIEQLQSGDSDLGEAAQETDAQAVRIMTIHASKGLEFPIVFLPEFDKSFNTQDLKGG 805
Query: 824 LILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVA 883
L++ + G+G++YI P V + TL + ++ L+ + SE+MRLLYVA
Sbjct: 806 LLIQKNEGIGVEYIQ-----------PDALVMIPTLQKLVVQQALKRQSWSEEMRLLYVA 854
Query: 884 MTRSEKKLYLVGK-------GSQEKLGDQYDGKSENNH-LPVADREHYLTFQDWLLAIEA 935
+TR+E++LY+VG G+Q K+ N LP R ++ W + A
Sbjct: 855 LTRAEQQLYIVGSVKVKGEAGNQSLKSLWQQSKNANGQFLPEFLRLQADSYLKWTIMSLA 914
Query: 936 AYAADEL-------HFKTSFITDEDLTEDKMGSLEAEQAYDAD--NLKDNRQSDDITRA- 985
L ++ LT +L + A + K + +D T +
Sbjct: 915 RTKNKVLEDWLGDGQLPRLVGSETPLTGKVAVTLTNQNEIHAPIASTKGSELVEDGTYSP 974
Query: 986 LDMLEAVEKLNQHYK--AAIHLPTVRTPSQIKKFYE-PVMETEGVEVMQTSYQTKP---- 1038
+D A LN Y A ++ S+IK+ +E P + V+ + Q +P
Sbjct: 975 MDFDRAKTILNYQYANLQATQTAAYQSVSEIKQIFEDPDLAQMQTAVITENGQLQPANVL 1034
Query: 1039 ---KFELPQFSKKAKQDP--TALGSSVHELMQRLHLSEQVSLEDILTALAEL----SVEE 1089
+ LP F Q P +A+G++ H ++Q + ++ +++ I EL +
Sbjct: 1035 KVDELPLPDFMNDGSQKPSSSAVGTATHLILQLIDFTKINTVQSIEKLRDELVENKRILP 1094
Query: 1090 NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASG-----ED---YVV 1141
+V I++D+IL F Q S K I A+ ++REA FAM+ PA+ ED ++
Sbjct: 1095 SVAPLIEIDEILAFLQ-SDFAKQIIAHQKTLHREATFAMIM--PANDIYDTLEDSAPVLI 1151
Query: 1142 RGIIDGYILFD--NRIVLFDYKTDKFTNSQ------AIKERYRGQMTLYAQALSQSYNIQ 1193
GIIDGY + + I LFDYKTD N+Q ++ RY+GQ+ LY QAL + Y
Sbjct: 1152 HGIIDGYFVDEASQTITLFDYKTDFVRNAQIDEDLTKLQARYKGQLHLYQQALQREYVGY 1211
Query: 1194 QV-DSYLILL 1202
QV D LI L
Sbjct: 1212 QVGDPQLIAL 1221
>gi|124520697|ref|ZP_01695814.1| UvrD/REP helicase [Bacillus coagulans 36D1]
gi|124497389|gb|EAY44950.1| UvrD/REP helicase [Bacillus coagulans 36D1]
Length = 1243
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 376/1269 (29%), Positives = 645/1269 (50%), Gaps = 130/1269 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ G +ILV+A+AGSGKT V++ERI+ KIL + ID+L I TFT AA
Sbjct: 15 TDDQWKAVMAKGQDILVAAAAGSGKTAVLVERIIQKILDEHDPLDIDELLIVTFTNAAAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ R+ K I E + D+ L +QL L A I T+ AF +++ +Y Y + I P
Sbjct: 75 EMRHRIGKAIEEAISSRPDS---HHLRKQLSLLNKAPISTLHAFCLEVIRKYYYLIDIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI D +E +LL+++V DDLF +LF + V F+ +R D + +I K+Y
Sbjct: 132 GFRI-ADDTEAELLRDEVLDDLFETEYAKAGNDLFYRTVDTFSNDRSDDE-LQHLIRKLY 189
Query: 206 DFSQATDNPQRWLLENF-LKGANTYKDFSAIPEQEVKDFLNTLQ-ETALALRDVTDL--E 261
DFS++ +P WL + L A ++ ++P F+ ++ + L L+ D+ E
Sbjct: 190 DFSRSHPDPSAWLDKMVELYDAGDVEEVDSLP------FMAAVKADIHLQLQAAKDMLGE 243
Query: 262 DYKQVTAKGTPTAAYQRHL---KMIEQL-----QDWVLHFDSL----YGRDGLGKLANDI 309
Y G P + +L K+ ++L W ++ + + R K
Sbjct: 244 AYGLALEPGGPAPRAENYLNDMKITDRLLAAIHGPWQGLYEEMNAWQFTRAKACKGDAYE 303
Query: 310 ATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQ 369
A L+ + +D+ + K L K + K + P++ L++ F++
Sbjct: 304 AKLVKAADDLRKSAKK--TLEDLKKDFFSRKP-ASFLKDMQEMRPVIAELRTLVKKFAEA 360
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHEVMVDEYQDNNHT 421
Y K ++ +FSD+ HF + IL E + + + Y ++ EV++DE+QD N
Sbjct: 361 YGAVKAEKGIVDFSDLEHFCLDILAEKNEDGSLTPSEVAKAYQQQFKEVLIDEFQDVNMV 420
Query: 422 QERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLILLK 476
QE ++ L++ G NRFMVGD+KQSIYRFR A+P +F +K++DF E + G I L
Sbjct: 421 QETIMNLVAKGAGFDGNRFMVGDVKQSIYRFRLAEPNLFLKKYRDFDPEGRDTGLRIDLS 480
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK 536
+NFRS+ E+LD TN +F +M VGE+ YD LVAG+S + +P +V + D
Sbjct: 481 KNFRSRKEILDGTNFIFKQIMGLKVGEMAYDSQAALVAGASYPERDHP---VKVALIDQA 537
Query: 537 DQQ-NQDLAVEDDSNQISLG----EVKLVAKEIIRLHNEEKV-----------QFEDITL 580
D+ +D++ E+ ++ L E + +A+EI +L +EE+V +++DI +
Sbjct: 538 DEAIEEDISDEETLDRAELEQSQLEARYLAREIKKLIDEEQVYNPKTGTFRPIRYKDIVI 597
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
L+ S I++ GIPL T+ Y + EV +ML L+ IDNP D L +L
Sbjct: 598 LMRSMAWAPTIMEELKQAGIPLYTEL-STGYFDATEVSIMLSLLKVIDNPYQDIPLAVVL 656
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
RSP+ DE+ LA + + + + + + + + + + ++ K+ F E
Sbjct: 657 RSPIVGLDEEALALIRIHEKRGPYYEAVKKFIADRPDPEEEEAH-------EKVSRFMEK 709
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
WR + L LIW++Y D +YD+ G LP +QRQANL AL RA +E+T F+G
Sbjct: 710 LSVWRSVARQGDLSSLIWQLYRDTQFYDFAGGLPGGKQRQANLRALYDRARQYEETSFRG 769
Query: 761 LSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQD 819
L RF+R I+++ E +DL ++ ++ V LMTIH SKGLEF VF+ +++KF+++D
Sbjct: 770 LFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHASKGLEFPVVFVAGLNRKFNMRD 829
Query: 820 MTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRL 879
+ +L + G KYI P +++ +LP KR+ +L L+E+MR+
Sbjct: 830 INQAFLLDKDFGFASKYIH-----------PEKRITYPSLPQLAFKRKKKLEMLAEEMRV 878
Query: 880 LYVAMTRSEKKLYLVGKGSQEKLGDQYD--GKSENNH---LPVADREHYLTFQDWLLAIE 934
LYVA+TR+++KLYLV G+ + LG + + GK++ LP R T+ DW++
Sbjct: 879 LYVALTRAKEKLYLV--GTVKNLGKRLEKWGKTKRQEDWLLPDHVRAAAGTYLDWIIPSL 936
Query: 935 AAYAADELHFKTS-FITDEDLTEDKMGSLEAEQAYDADNLKDNRQSD---DITRALDM-- 988
+ +A + F + + +D ++ ++ L EQ D + ++D + L +
Sbjct: 937 SRHADGTVLFGSDGRVVLDDPSKWQIAVLPKEQFADIQEPEQVGEADWQHQVKAGLPVAA 996
Query: 989 -----LEAVEKLNQHY--KAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFE 1041
+ +L+ Y + A ++ S++K+ +E ET G + + K F+
Sbjct: 997 ESAYKAQVFGRLSFRYSNEPATFRRAKQSVSELKRMHEEHDETNGTRFIPNA--EKHIFD 1054
Query: 1042 LPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKK----AIQV 1097
P+F ++ P G+++H +MQ + + + + E+ +E + + AI
Sbjct: 1055 RPRFMQEKSITPAERGTAMHMVMQHIPFDAPPTYASVEALVEEMVKQELLTEEQADAIAA 1114
Query: 1098 DKILHFFQTSQLGKLIQANADKVYREAPFAM------LQADPASGEDYV-VRGIIDGYIL 1150
++++ FF+T +G+ I A A +V RE PF++ + D + +++V ++GI D
Sbjct: 1115 EQLVRFFETD-IGRRILA-AGRVMREMPFSLSVPAAEIYRDASLADEHVLIQGIFDCVAE 1172
Query: 1151 FDNRIVLFDYKTDK--------FTNSQAI-KERYRGQMTLYAQALSQSYNIQQVDSYLIL 1201
+ +VL D+KTD F ++ + ++RY Q+ LY++AL + YL
Sbjct: 1173 EKDGLVLLDFKTDNIHGRFKGGFEEAEPVLRKRYEVQLALYSRALETILKKKVKAQYLYF 1232
Query: 1202 L-GGEKLEV 1209
GG LE+
Sbjct: 1233 FDGGHLLEI 1241
>gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1]
gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1]
Length = 1258
Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats.
Identities = 380/1280 (29%), Positives = 647/1280 (50%), Gaps = 159/1280 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T +Q +AI+ G +ILV+A+AGSGKT V++ERI+ KIL G+ +D+L + TFT +A
Sbjct: 15 TDDQWKAIWAKGRDILVAAAAGSGKTAVLVERIIQKILDKEDGINVDELLVVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ R+ + + + + ++ L +QL L A I T+ +F +++ +Y Y + I P
Sbjct: 75 EMRHRIGEALEKAISADPNS---YHLRKQLSLLNRASISTLHSFCLEVIRKYYYLIDIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRIL D +E +LL+++V D+LF + + + F KLV F +R D++ + +I K+Y
Sbjct: 132 GFRILDD-TEGELLRDEVLDELFEEEYGKEDNDSFYKLVDTFTNDRSDAA-LQDMIRKLY 189
Query: 206 DFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKD--FLNTLQ-ETALALRDVTDL-- 260
DFS++ NP WL N + + + ++D F+ L+ + L+L+ L
Sbjct: 190 DFSRSHPNPDEWL-------GNLVEMYDVDEDANIEDLAFIEALKFDIMLSLKGAQALFQ 242
Query: 261 EDYKQVTAKGTPTAAYQRHLK---MIEQL-----QDWV--------LHFDSLY---GRDG 301
Y G P + L + EQL + W + F L G +
Sbjct: 243 RAYDLTKEPGGPAPRAENFLDDLGIAEQLSASFQKSWSEGQALFQSIKFSRLKPCKGDEY 302
Query: 302 LGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQS 361
L + TL G + + R + LR +K + + L++ ++
Sbjct: 303 DSDLVEEAKTLRDKGKKMIEKLAEDFFSRKPETYLRDMKKMRGVVA------SLVEAVRG 356
Query: 362 FTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMVD 413
F+ F+ K ++ +F+D+ H+ ++I+ + +L Y ++ EV+VD
Sbjct: 357 FSHKFNA----LKNEKGVVDFADLEHYCLEIMTDPAEDGELKPSFAAMEYRKQFKEVLVD 412
Query: 414 EYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH-PE 468
EYQD N QE +L L++ N FMVGD+KQSIYRFR A+P +F K+ F E
Sbjct: 413 EYQDTNLVQESILGLVTADEEALGNLFMVGDVKQSIYRFRLAEPNLFLSKYNRFTPSGAE 472
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET 528
G I L NFRS+ EVL+ TN +F +M VG+I YD LV G++ YP++E
Sbjct: 473 TGMKIDLSRNFRSRLEVLEGTNFLFKQIMGVNVGDIEYDHEALLVKGAA-----YPEDEK 527
Query: 529 QVLIYDTKDQQNQDLAVEDDSNQI------------SLGEVKLVAKEIIRLHNE------ 570
+ +Q + ++ + + ++ + S+ E + +A+++ L +E
Sbjct: 528 YPIEVAVINQSDDEVPLAESASDLEGLVYDEADLEKSVIEARYMAQKVKELISEGKQVYD 587
Query: 571 ------EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTL 624
K+Q+ DI +L+ S I++ F +GIP+ + Y ++ EV +ML L
Sbjct: 588 AKAGRHRKLQYRDIVILLRSMPWAPEIMEEFKKHGIPIYANL-SSGYFEATEVAIMLSLL 646
Query: 625 RSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQ 684
+ IDNP D LV++LRSP+ DE+ LA + + + + YE ++ R +Q +
Sbjct: 647 KVIDNPYQDIPLVSVLRSPIVGIDEEGLAEVRIHSKSGTY----YEAVQ--RFVSKKQSE 700
Query: 685 LITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLY 744
+ E KL F + WR + SL DL+W++Y D +YD+ G +P +QRQANL
Sbjct: 701 VNNEEAHEKLSRFLSSLTIWRTKARQGSLADLVWQLYRDTRFYDFAGGMPGGKQRQANLR 760
Query: 745 ALALRADNFEKTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTIHKSKGLEF 803
AL RA +E+T F+GL RF+R ID++ E +DL A ++ ++ V +MTIH SKGLEF
Sbjct: 761 ALYDRARQYEETSFRGLFRFLRFIDRMRERGDDLGAARALSEQEDVVRMMTIHSSKGLEF 820
Query: 804 KYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQL 863
VF+ + ++F++ D+ +L ++ G KY L P ++S +LP
Sbjct: 821 PVVFVAGLSRQFNLMDLNQSYLLDKEFGFASKY-----------LDPEKRISYPSLPQLA 869
Query: 864 NKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADR 920
KR+ RL T++E+MR+LYVA+TR+++KLYL+G K +++ + + + + LP +R
Sbjct: 870 FKRKKRLETIAEEMRVLYVALTRAKEKLYLIGTVKDAEKSMKQWKEAAPQTDWLLPDYER 929
Query: 921 EHYLTFQDWL----------LAIEAAYAA-----DELHFKTSFITDEDLTEDKMGSLEAE 965
L+F DW+ A+ ++ E+H S + + + + E E
Sbjct: 930 AKALSFMDWVGPALVRHRDCTALNEGRSSVHSLPPEIHEHPSCWKLDVIPKSQFMLQEGE 989
Query: 966 QAYDADNLKDN-RQSDDITR-ALDMLEAVEKLNQHYK--AAIHLPTVRTPSQIKKFYEPV 1021
A + + ++N ++ + + + + E E+L+ Y A LP+ ++ S+IK+ +E +
Sbjct: 990 DAEEEIDWQENVKEGLPVEKESPEKEEVAERLSWRYSYPEAAVLPSKQSVSEIKRMFE-I 1048
Query: 1022 METEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSE---QVSLEDI 1078
+ + M Q KP F P+F + + P +G+++H +MQ + SE + SL+ +
Sbjct: 1049 SDEASSDRMVRKIQ-KPVFRRPKFLQSKQLTPAEIGTAMHMVMQHISFSECPNEKSLQSL 1107
Query: 1079 LTAL--AELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM-------- 1128
L L EL EE +AI +KIL FF++ +++ NA +++RE PF+M
Sbjct: 1108 LDDLKQKELLTEEQA-EAIDQNKILAFFRSDTGQRVL--NAHELHREVPFSMAVPVQEID 1164
Query: 1129 LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTN---------SQAIKERYRGQM 1179
A E +V+GIID ++ +VL DYKTD S + ERYR Q+
Sbjct: 1165 ASASADESETVLVQGIIDLIFRDEHGLVLLDYKTDTIDERYKGGYDEASPILLERYRVQI 1224
Query: 1180 TLYAQALSQSYNIQQVDSYL 1199
LY +A+ + + + YL
Sbjct: 1225 GLYTKAIERIWKETVNERYL 1244
>gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42]
gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42]
Length = 1235
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 385/1255 (30%), Positives = 642/1255 (51%), Gaps = 149/1255 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q AI +SG +ILV+A+AGSGKT V++ER++ KI V +D+L + TFT +A
Sbjct: 13 TDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEDPVDVDRLLVVTFTNASAA 72
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + ++L N +L + QL L A I T+ +F +++ +Y Y + + P
Sbjct: 73 EMKHRIAEALEKELA-KNPGSLH--IRRQLSLLNRASISTLHSFCLQVLKKYYYMIDLDP 129
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
FR + D++E +LL ++V D+LF D Y G+QA F +L + +R D + + ++ ++
Sbjct: 130 GFR-MADQTEGELLGDEVLDELFEDEYAKGNQA--FFELADRYTTDRHDL-DLQDLVKRV 185
Query: 205 YDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYK 264
Y++S++ +P+ WL ++F++ + ++ S + E ++ E AL LE
Sbjct: 186 YEYSRSHPDPEVWL-QSFVRLYDVTEE-SKMEELPFYQYVKEDAEMAL-FGAKQKLEKAL 242
Query: 265 QVT-AKGTPTAAYQRHLKMIEQLQDWVL---HFDSLYGR--------------DGLGKLA 306
++T A G P L ++Q+++ + FD+LY R D K
Sbjct: 243 ELTKAPGGPAPRADNFLDDLQQIEELISCRHDFDALYERVPAVSFKRAKAVKGDEFDKAL 302
Query: 307 NDIATLIPSGNDVTVAGVKYPVF-RSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLD 365
D AT + +G + VK F RS L+ L ++ P+++ L +
Sbjct: 303 LDEATDLRNGAKKLIEKVKTDYFTRSPQDHLKSLADMK----------PVIETLVQLVIS 352
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQIL----EENDAIRQ----LYIDKYHEVMVDEYQD 417
+ K++ AK +++ +FSD+ H+ + IL EE + Y D++HEV+VDEYQD
Sbjct: 353 YGKRFEAAKQEKSIIDFSDLEHYCLAILTAVDEEGRRVPSEAAVYYQDQFHEVLVDEYQD 412
Query: 418 NNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH-PEHGKL 472
N QE +L+L+ +G N FMVGD+KQSIYRFR A+P +F K+K F E G+
Sbjct: 413 TNLVQESILQLVKSGNEEAGNLFMVGDVKQSIYRFRLAEPLLFLGKYKRFTESGAGAGQK 472
Query: 473 ILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE---TQ 529
I L +NFRS+S++LD+TN +F LM +GE+ YD+ L G+S YP N+ T+
Sbjct: 473 IDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAALKLGAS-----YPPNDAAKTE 527
Query: 530 VLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRL------------HNEEKVQFED 577
+L+ D+ D + ED + E K +A EI +L +Q+ D
Sbjct: 528 LLLIDSADGADSSEDAED--FETVHWEAKAIAGEIRKLVSSPFKVYDGKTKTHRNIQYRD 585
Query: 578 ITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALV 637
I +L+ S +++ + GIP+ + Y ++VEV L L+ IDNP D L
Sbjct: 586 IVILLRSMPWAPQLMEELKNQGIPVYANL-TSGYFEAVEVAAALSVLKVIDNPYQDIPLA 644
Query: 638 ALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAF 697
++LRSP+ DE++LA + L+ + K YE ++ + + L KL F
Sbjct: 645 SVLRSPIVGCDENELALIRLE----KKKAPFYEALKAYLANADRH-----DELYQKLRTF 695
Query: 698 FETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTG 757
+++ WR FS +S+ +LIW++Y D Y+DY G +P +QRQANL L RA ++E T
Sbjct: 696 YDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQANLRVLYDRARSYEATA 755
Query: 758 FKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFS 816
F+GL RF+R I+++ E +DL ++ ++ V LMTIH SKGLEF VF + + F+
Sbjct: 756 FRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFTAGLGRSFN 815
Query: 817 IQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQ 876
+ D+ +L ++ G G KYI P +++S TLP K+++R LSE+
Sbjct: 816 MMDLNKSYLLDKELGFGTKYIH-----------PELRISYPTLPLVAMKKKMRRELLSEE 864
Query: 877 MRLLYVAMTRSEKKLYLVG--KGSQEKLGD-QYDGKSENNHLPVADREHYLTFQDWLLAI 933
+R+LYVA+TR+++KL+LVG K +++L Q + L DR ++ D++
Sbjct: 865 LRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYLDFIGPA 924
Query: 934 EAAYAADELHFKTSFITDEDLTED---------KMGSLEAEQAYD-----ADNLKDNRQS 979
+ E H + ED+ D + L E + + LK +Q
Sbjct: 925 LIRHRDMEAHRTPGLSSSEDIARDPSRFHIRMLQQSELLEENPKERAEEKSKRLKAIQQG 984
Query: 980 DDITRALDMLEAVEKLNQ---HYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQT 1036
+ I + + +L + Y+ + T ++ S++K+ E E G +++ S T
Sbjct: 985 EPIPDSFSFDDQARRLLEWEYPYRELTAIRTKQSVSELKRKQEYEDEYSGRSLIKPSGDT 1044
Query: 1037 KPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTAL-----AELSVEENV 1091
+ P F K G+++H +MQ + L+ + E+ + EL EE
Sbjct: 1045 L-LYRRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKELLTEEQ- 1102
Query: 1092 KKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPA---------SGEDYVVR 1142
++AI +++I+ FF T ++GK + A ++ RE PF+M A PA +GE +V+
Sbjct: 1103 QEAIDIEEIVQFFGT-EIGKDL-LRALRIDREVPFSM--ALPAGEVYKDAETAGEPLLVQ 1158
Query: 1143 GIIDGYILFDNRIVLFDYKTD----KFTN-----SQAIKERYRGQMTLYAQALSQ 1188
GIID + + L DYKTD KF N + +++RY Q+ LY +A+ Q
Sbjct: 1159 GIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQ 1213
>gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains)
[Streptococcus pyogenes M49 591]
Length = 405
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 229/392 (58%), Positives = 297/392 (75%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
++F PFL+ + I LQ E SD+ QKRT +QIEAIYTSG NILVSASAGSGKTFVM+ER
Sbjct: 14 ISFAPFLSPEAIKHLQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVER 73
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+DKILRGV+ID+LFISTFTVKAA EL+ER+E K+ Q+ T D +K +L+EQL L
Sbjct: 74 ILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQIAQTTDFQMKVYLTEQLQSLCQ 133
Query: 121 ADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELF 180
ADIGTMDAF QK+V++YGY++GIS FRI+QDK+EQD+LK +VF LF+++ +A +F
Sbjct: 134 ADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKEAPVF 193
Query: 181 TKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEV 240
LV+NF+GN KD+S FR+++Y Y FSQ+T+NP+ WL ENFL A TY+ IP+ ++
Sbjct: 194 RALVKNFSGNCKDTSAFRELVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDI 253
Query: 241 KDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRD 300
+ L +Q+TA LRDVTD+EDY Q+T G+ +A Y +HL +IE+L DWV F LYG+
Sbjct: 254 ELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGKA 313
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
GL +L D+ LIPSGNDVTV+ VKYPVF++LH +L+ +HLETI YQ PLL+ LQ
Sbjct: 314 GLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQKDCFPLLEQLQ 373
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQI 392
F L FS+ YL K+QE+AFEFSDIAHFAI+I
Sbjct: 374 DFVLAFSEAYLAVKIQESAFEFSDIAHFAIKI 405
>gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
Length = 1241
Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats.
Identities = 379/1259 (30%), Positives = 628/1259 (49%), Gaps = 153/1259 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHIRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSDD-DLQRMILALH 189
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++WL +E + T +D +++ ++VK L T ++ +R T+L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQ---HIRKATEL 246
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSLYG-------RDGLGKLAND 308
A T Q L ++ L + W ++++ R D
Sbjct: 247 AMLPDGPAPRVET--LQADLALLGTLSSAARESWTSVYEAMQNVSWQTLKRIKKSDYNED 304
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L K + +QD P+L+ L F++
Sbjct: 305 IVKQVDSLRNKAKDEVK-----KLQEELFSRKPESFLRDFQDMH-PVLEKLVQLVKVFTE 358
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N
Sbjct: 359 RFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRNKFAEVLVDEYQDTNF 418
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L
Sbjct: 419 VQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDL 478
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+NFRS+ EVL TN +F +M E VGEI YD +L G+S YP+ E
Sbjct: 479 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAS-----YPEGEDVAAELLC 533
Query: 536 KDQQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLL 581
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L
Sbjct: 534 IQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVIL 593
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
+ S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LR
Sbjct: 594 LRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLR 652
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 653 SPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLL 705
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL
Sbjct: 706 QGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGL 765
Query: 762 SRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 766 FRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDL 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+L + G G ++I P ++ TL KR++++ ++E+MR+L
Sbjct: 826 MKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVL 874
Query: 881 YVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW-------- 929
YVA+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 875 YVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRH 934
Query: 930 -----LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNL 973
LL + DE++ + TS+ + E + E+K LEA + A L
Sbjct: 935 RDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPL 994
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEG--VEVMQ 1031
+ R+ + R + E + K ++ ++IK+ Y+ ++ ++ ++
Sbjct: 995 QSERKEEVYDRLMWKYGYEEATSHRAKQSV--------TEIKRNYQSEEGSDNAFIKKLR 1046
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE-- 1089
QT+P+F + A++ G++VH +MQ + L + ++ E I +A + +E
Sbjct: 1047 APIQTRPRFMEKKGLTYAER-----GTAVHAVMQHVDLKKPITEEVIREQIAGMVNKELL 1101
Query: 1090 --NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDY 1139
+ I ++K++ FF S LGK + A A V RE PF M+ A SGE
Sbjct: 1102 TFEQAEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1159
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDK--------FTNSQAI-KERYRGQMTLYAQALSQS 1189
+V+G+ID I ++ I L D+KTD F ++ I +ERY+ Q++LYA+AL +S
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1218
>gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
Length = 1241
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 379/1257 (30%), Positives = 620/1257 (49%), Gaps = 149/1257 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSDD-DLQRMILALH 189
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++WL +E + T +D +++ ++VK L T ++ +R T+L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQ---HIRKATEL 246
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSLYG-------RDGLGKLAND 308
A T Q L ++ L + W ++++ R D
Sbjct: 247 AMLPDGPAPRVET--LQADLALLGTLSSAARESWTSVYEAMQNVSWQTLKRIKKSDYNED 304
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L + + +QD P+L+ L F+
Sbjct: 305 IVKQVDSLRNKAKDEVK-----KLQEELFSRRPESFLRDFQDMH-PVLEKLVQLVKVFTG 358
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N
Sbjct: 359 RFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNF 418
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L
Sbjct: 419 VQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDL 478
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+NFRS+ EVL TN +F +M E VGEI YD +L G+S YP+ E
Sbjct: 479 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAS-----YPEGEDVAAELLC 533
Query: 536 KDQQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLL 581
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L
Sbjct: 534 IQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVIL 593
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
+ S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LR
Sbjct: 594 LRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLR 652
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 653 SPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLL 705
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL
Sbjct: 706 QGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGL 765
Query: 762 SRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 766 FRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDL 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+L + G G ++I P ++ TL KR++++ ++E+MR+L
Sbjct: 826 MKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVL 874
Query: 881 YVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW-------- 929
YVA+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 875 YVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRH 934
Query: 930 -----LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNL 973
LL + DE++ + TS+ + E + E+K LEA + A L
Sbjct: 935 RDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPL 994
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTS 1033
+ R+ + R + E + K ++ ++IK+ Y+ EG +
Sbjct: 995 ESERKEEVYDRLMWKYGYEEATSHRAKQSV--------TEIKRNYQ---SEEGSDNAFIK 1043
Query: 1034 YQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE---- 1089
P P+F +K G++VH +MQ + L + V++E + +A + +E
Sbjct: 1044 KLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPVTVEVLQEQIAGMVNKELLTF 1103
Query: 1090 NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDYVV 1141
+ I ++K++ FF S LGK + A A V RE PF M+ A SGE +V
Sbjct: 1104 EQAEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGESGESILV 1161
Query: 1142 RGIIDGYILFDNRIVLFDYKTDK--------FTNSQAIKE-RYRGQMTLYAQALSQS 1189
+G+ID I ++ I L D+KTD F ++ I E RY+ Q++LYA+AL +S
Sbjct: 1162 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEVRYKVQLSLYAKALEKS 1218
>gi|49480014|ref|YP_035378.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 1241
Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats.
Identities = 377/1259 (29%), Positives = 629/1259 (49%), Gaps = 153/1259 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHIRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSDD-DLQRMILALH 189
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++WL +E + T +D +++ ++VK L T ++ +R T+L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQ---HIRKATEL 246
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSLYG-------RDGLGKLAND 308
A T Q L ++ L + W ++++ R D
Sbjct: 247 AMLPDGPAPRVET--LQADLALLGTLSSAARESWTSVYEAMQNVSWQTLKRIKKSDYNED 304
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L + + +QD P+L+ L F++
Sbjct: 305 IVKQVDSLRNKAKDEVK-----KLQEELFSRRPESFLRDFQDMH-PVLEKLVQLVKVFTE 358
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N
Sbjct: 359 RFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNF 418
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L
Sbjct: 419 VQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDL 478
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+NFRS+ EVL TN +F +M E VGEI YD +L G++ YP+ E
Sbjct: 479 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAT-----YPEGEDVAAELLC 533
Query: 536 KDQQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLL 581
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L
Sbjct: 534 IQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVIL 593
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
+ S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LR
Sbjct: 594 LRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLR 652
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 653 SPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLL 705
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL
Sbjct: 706 QGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGL 765
Query: 762 SRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 766 FRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDL 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+L + G G ++I P ++ TL KR++++ ++E+MR+L
Sbjct: 826 MKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVL 874
Query: 881 YVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW-------- 929
YVA+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 875 YVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGASCYLDWIAPSLYRH 934
Query: 930 -----LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNL 973
LL + DE++ + TS+ + E + E+K LEA + A L
Sbjct: 935 RDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPL 994
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEG--VEVMQ 1031
+ R+ + R + Y+ A ++ ++IK+ Y+ ++ ++ ++
Sbjct: 995 QSERKDEVYDRLM--------WKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLR 1046
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE-- 1089
QT+P+F + A++ G++VH +MQ + L + +++E + +A + +E
Sbjct: 1047 APIQTRPRFMEKKGLTYAER-----GTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELL 1101
Query: 1090 --NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDY 1139
+ I V+K++ FF S LGK + A A V RE PF M+ A SGE
Sbjct: 1102 TFEQAEEIAVEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1159
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDK--------FTNSQAI-KERYRGQMTLYAQALSQS 1189
+V+G+ID I ++ I L D+KTD F ++ I +ERY+ Q++LYA+AL +S
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1218
>gi|152974673|ref|YP_001374190.1| Recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
391-98]
Length = 1242
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 388/1282 (30%), Positives = 636/1282 (49%), Gaps = 155/1282 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 16 TDDQWKAVVAHGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 75
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L + + + +QL L A I T+ +F +++ Y Y L I P
Sbjct: 76 EMKNRIGEALEKVLI---EEPSSRHIRKQLSLLNKASISTIHSFCLQVIRSYYYMLDIDP 132
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + ++ +LF +LV + +R D + +++I ++
Sbjct: 133 RFRI-ANQTENELLKEEVLDDILEEEYGMEENQLFFELVDRYTSDRNDD-DLQRMILALH 190
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
+ A NP++WL +E + T +D +++ ++VK L T E ++ L
Sbjct: 191 TAAGAHPNPEKWLDRLVEAYNVEGKTIEDLMYASYLLEDVKFQLETATEHIRKAMELAML 250
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSL-------YGRDGLGKLAND 308
D Q L ++E L + W ++++ R D
Sbjct: 251 PD-----GPAPRMETLQTDLVLLETLSHAARKSWTSVYEAMQHVSWQTLKRIKKSDYNED 305
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L K + +Q+ P+L L +FS
Sbjct: 306 IVKQVDSLRNKAKDEVK-----KLQEELFSRKPESFLRDFQEMH-PVLGKLVQLVKEFSN 359
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E +L Y +++ EV+VDEYQD N
Sbjct: 360 RFQAIKRDKGMVDFTDLEHFCLQILSEQGEDGELRPSPVALQYRNRFAEVLVDEYQDTNF 419
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++L++ N FMVGD+KQSIYRFR A+P +F K+K F QE E G I L
Sbjct: 420 VQESIIKLVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLEGGMKIDL 479
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE---TQVLI 532
+NFRS+ EVL TN +F +M E VGEI YD +L G+S YP+ E ++L
Sbjct: 480 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIEYDADAELKLGAS-----YPEGEDVAAELLC 534
Query: 533 YDTKDQQNQDLAVEDDSNQISLGEVKLVAKEII-----------RLHNE-EKVQFEDITL 580
+++ D ++ + L E +L+A+ I R NE +VQ+ D +
Sbjct: 535 IHQSEEEVLDGEEGEEVEKAQL-EARLIAQRIKAMVDSGYTVYDRKTNEMRQVQYRDFVI 593
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
L+ S I++ GIP+ + Y ++ EV +M++ R IDNP+ D L A+L
Sbjct: 594 LLRSMPWAPQIMEELKLQGIPVYAELA-TGYFEATEVNIMMNVFRVIDNPVQDIPLAAVL 652
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
RSP+ ++++LA L K + YE M + G + + L KL F+
Sbjct: 653 RSPIVGLNDEELAMLRAH----AKKGSFYEVMRSFLRGAPLEG---GKELHEKLKWFYHL 705
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKG 760
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+G
Sbjct: 706 LQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPGGKQRQANLRVLYDRARQYEATSFRG 765
Query: 761 LSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQD 819
L RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD
Sbjct: 766 LFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQD 825
Query: 820 MTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRL 879
+ +L + G G ++I P ++ TL KR+++ ++E+MR+
Sbjct: 826 LMQRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKRELIAEEMRV 874
Query: 880 LYVAMTRSEKKLYLVGK-GSQEKLGDQYDGKSENNH--LPVADREHYLTFQDW------- 929
LYVA+TR+++KL L+G +EK +++ E+ LP R + DW
Sbjct: 875 LYVALTRAKEKLILIGTVKDKEKEMEKWLDTREHTEWLLPDYVRASASCYLDWIAPSLYR 934
Query: 930 ------LLAIEAAYAADELH-----FKTSFITDEDL------TEDKMGSLEAEQAYDADN 972
LL + +E++ +K F+ + L E+K LEA + A
Sbjct: 935 HRDSEILLELGQGTIPNEIYEYDTSWKVEFVDGKTLLAPEPAQEEKQELLEALREKKAVP 994
Query: 973 LKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFY--EPVMETEGVEVM 1030
L+ R+ + R E + Q K ++ ++IK+ Y E +T ++ +
Sbjct: 995 LESERKDEVYNRLTWKYEYEDATLQRAKQSV--------TEIKRNYQSEDGSDTAFIQKL 1046
Query: 1031 QTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEEN 1090
+ +T+P+F + A++ G++VH +MQ + L + +++E I +A++ +E
Sbjct: 1047 RAPIRTRPRFMEKKGLTYAER-----GTAVHAVMQHVDLKQSITIESIQEQIAKMVNKEI 1101
Query: 1091 VK----KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFA-MLQADPA-------SGED 1138
+ + I V++I+ FF+ S LGK + A V RE PF ML A A S E
Sbjct: 1102 LTFEQAEEISVERIVAFFE-SHLGKRV-LEAKSVEREVPFTMMLSAKEAYQNWQGKSEET 1159
Query: 1139 YVVRGIIDGYILFDNRIVLFDYKTDK--------FTNSQAI-KERYRGQMTLYAQALSQS 1189
+V+G+ID I D+ I L D+KTD F ++ I +ERY+ Q++LYA+AL ++
Sbjct: 1160 ILVQGVIDCMIEEDDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKT 1219
Query: 1190 YNIQQVDSYLILLGGEKLEVVE 1211
+ L G + +E
Sbjct: 1220 LQHPVKEKCLYFFDGNHVITIE 1241
>gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241]
gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241]
Length = 1241
Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats.
Identities = 377/1255 (30%), Positives = 625/1255 (49%), Gaps = 145/1255 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L N+ Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVL--INEPG-SQHIRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSDD-DLQRMILALH 189
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++WL +E + T +D +++ ++VK L T ++ ++ L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQHIRKATELAML 249
Query: 261 ED---------YKQVTAKGT-PTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
D + GT +AA + + E +Q+ + + +L R D+
Sbjct: 250 PDGPAPRVETLQADLVLLGTLSSAARESWTSVYEAMQN--VSWQTL-KRIKKSDYNEDVV 306
Query: 311 TLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQY 370
+ S + VK L L K + +QD P+L+ L F++++
Sbjct: 307 KQVDSLRNKAKDEVK-----KLQEELFSRKPESFLRDFQDMH-PVLEKLVQLVKVFTERF 360
Query: 371 LQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQDNNHTQ 422
K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N Q
Sbjct: 361 QTMKRDKGMVDFTDLEHFCLQILSEQSESGEMKPSAVALQYRNKFAEVLVDEYQDTNFVQ 420
Query: 423 ERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKE 477
E +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L +
Sbjct: 421 ESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDLAK 480
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
NFRS+ EVL TN +F +M E VGEI YD +L G++ YP+ E
Sbjct: 481 NFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAT-----YPEGEDVAAELLCIQ 535
Query: 538 QQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLLVS 583
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L+
Sbjct: 536 QTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLR 595
Query: 584 SRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LRSP
Sbjct: 596 SMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSP 654
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 655 IVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLLQG 707
Query: 704 WREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSR 763
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL R
Sbjct: 708 WREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFR 767
Query: 764 FIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTS 822
F+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 768 FLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMK 827
Query: 823 PLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYV 882
+L + G G ++I P ++ TL KR++++ ++E+MR+LYV
Sbjct: 828 RFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYV 876
Query: 883 AMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW---------- 929
A+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 877 ALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRD 936
Query: 930 ---LLAIEAAYAADELHFKT-----------SFITDEDLTEDKMGSLEAEQAYDADNLKD 975
LL + DE++ + + + E + E+K LEA + A L+
Sbjct: 937 SEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPLQS 996
Query: 976 NRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQ 1035
R+ + R + E + K ++ ++IK+ Y+ EG +
Sbjct: 997 ERKEEVYDRLMWKYGYEEATSHRAKQSV--------TEIKRNYQ---SEEGSDNAFIKKL 1045
Query: 1036 TKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE----NV 1091
P P+F +K G++VH +MQ + L + +++E + +A + +E
Sbjct: 1046 RAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKELLTFEQ 1105
Query: 1092 KKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDYVVRG 1143
+ I ++K++ FF S LGK + A A V RE PF M+ A SGE +V+G
Sbjct: 1106 AEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGESGESILVQG 1163
Query: 1144 IIDGYILFDNRIVLFDYKTD----KFTN--SQA---IKERYRGQMTLYAQALSQS 1189
+ID I ++ I L D+KTD KF+ QA ++ERY+ Q++LYA+AL +S
Sbjct: 1164 VIDCMIEEEDGITLIDFKTDTIEGKFSGGFEQAKPILEERYKVQLSLYAKALEKS 1218
>gi|118476726|ref|YP_893877.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis str. Al
Hakam]
gi|118415951|gb|ABK84370.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis str. Al
Hakam]
Length = 1241
Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats.
Identities = 379/1257 (30%), Positives = 621/1257 (49%), Gaps = 149/1257 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSDD-DLQRMILALH 189
Query: 206 DFSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++WL +E + T +D +++ ++VK L T ++ +R T+L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQ---HIRKATEL 246
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSLYG-------RDGLGKLAND 308
A T Q L ++ L + W ++++ R D
Sbjct: 247 AMLPDGPAPRIET--LQADLALLGTLSSAARESWTSVYEAMQNVSWQTLKRIKKSDYNED 304
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L + + +QD P+L+ L F++
Sbjct: 305 IVKQVDSLRNKAKDEVK-----KLQEELFSRRPESFLRDFQDMH-PVLEKLVQLVKVFTE 358
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N
Sbjct: 359 RFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNF 418
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L
Sbjct: 419 VQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDL 478
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+NFRS+ EVL TN +F +M E VGEI YD +L G+S YP+ E
Sbjct: 479 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAS-----YPEGEDVAAELLC 533
Query: 536 KDQQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLL 581
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L
Sbjct: 534 IQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVIL 593
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
+ S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LR
Sbjct: 594 LRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLR 652
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 653 SPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLL 705
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL
Sbjct: 706 QGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGL 765
Query: 762 SRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 766 FRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDL 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+L + G G ++I P ++ TL KR++++ ++E+MR+L
Sbjct: 826 MKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVL 874
Query: 881 YVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW-------- 929
YVA+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 875 YVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWIAPSLYRH 934
Query: 930 -----LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNL 973
LL + DE++ + TS+ + E + E+K LEA + A L
Sbjct: 935 RDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPL 994
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTS 1033
+ R+ + R + E + K ++ ++IK+ Y+ EG +
Sbjct: 995 QSERKDEVYDRLMWKYGYEEATSHRAKQSV--------TEIKRNYQ---SEEGSDNAFIK 1043
Query: 1034 YQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE---- 1089
P P+F +K G++VH +MQ + L + +++E + +A + +E
Sbjct: 1044 KLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELLTF 1103
Query: 1090 NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDYVV 1141
+ I V+K++ FF S LGK + A A V RE PF M+ A SGE +V
Sbjct: 1104 EQAEEIAVEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGESGESILV 1161
Query: 1142 RGIIDGYILFDNRIVLFDYKTDK--------FTNSQAIKE-RYRGQMTLYAQALSQS 1189
+G+ID I ++ I L D+KTD F ++ I E RY+ Q++LYA+AL +S
Sbjct: 1162 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218
>gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
ATCC 14580]
gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580]
gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
ATCC 14580]
gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis DSM 13]
Length = 1230
Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats.
Identities = 396/1265 (31%), Positives = 643/1265 (50%), Gaps = 157/1265 (12%)
Query: 19 EAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLF 75
E K T +Q +AI +SG +ILV+A+AGSGKT V++ERI+ KI R V +D+L
Sbjct: 2 EISKPKGSTWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLL 61
Query: 76 ISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVT 135
+ TFT +A E+K R+ + + ++L N +L L QL L A I T+ +F +++
Sbjct: 62 VVTFTNASAAEMKHRIGEALEKELA-ENPGSLH--LRRQLALLNKASISTLHSFCLQVIR 118
Query: 136 QYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDS 194
+Y Y + + P FRI D++E +LL ++V D+LF + Y+ G+ A F +LV + +R D
Sbjct: 119 KYYYLIDVDPAFRI-ADQTEGELLGDEVLDELFEEEYKKGNPA--FFELVDRYTTDRHDL 175
Query: 195 SNFRQIIYKIYDFSQATDNPQRWL--LENFLKGANTYK----DFSAIPEQEVKDFLNTLQ 248
+ + ++ ++Y+FS++ +P+ WL L A+ K F + ++++ L ++
Sbjct: 176 -DLQHLVKRVYEFSRSHPDPEGWLHSLAELYDAASDTKVEALPFYSYIKEDIALVLEGMR 234
Query: 249 ETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLY----------- 297
+ D+T KQ + L I++L F +L+
Sbjct: 235 QKLTRALDLT-----KQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELVPTVSFQRL 289
Query: 298 ----GRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSL 353
G + +L ++ A L S A + +S + +HLE++ + +
Sbjct: 290 KPCKGDEYDPRLVDEAADLRNS------AKKQLEKLKSDYFSRTPEQHLESLREMK---- 339
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILE-ENDA-------IRQLYID 405
P++Q L L++ +++ +AK ++ +FSD+ H + IL +N A + Y
Sbjct: 340 PVIQTLVQLVLEYGRRFAEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRH 399
Query: 406 KYHEVMVDEYQDNNHTQERMLELLSNGR---NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
++HEV+VDEYQD N QE +L+L++ N FMVGD+KQSIYRFR A+P +F K+K
Sbjct: 400 QFHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFRLAEPLLFLSKYKR 459
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
F + G+ I L +NFRS+S++LD+TN +F LM E VGE+ YD+ +L G+S
Sbjct: 460 FTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDEQAELKLGAS---- 515
Query: 522 PYPQNE---TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE------- 571
YP NE T++L+ +T + A E ++ Q+ E + +A +I RL E+
Sbjct: 516 -YPPNEATKTELLLIETPSGAPGEEAEELEAVQL---EARAMAGQIRRLITEKFQVYDAK 571
Query: 572 -----KVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRS 626
+Q+ DI +L+ S I+ F GIP+ + Y ++ EV V L L+
Sbjct: 572 AKASRNIQYRDIVVLLRSMPWAPQIMDEFKQQGIPVYANL-STGYFEATEVSVTLSLLKI 630
Query: 627 IDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMEN---ARNGQGQQV 683
IDN D L ++LRSP+ DE++L+ + +++ K YE M+ A +G
Sbjct: 631 IDNAYQDIPLASVLRSPVVGLDENELSLIRIKD----KKAPFYEAMKAYLAAADGD---- 682
Query: 684 QLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANL 743
E LS KL F WR ++ +S+ +LIW+IY D Y DYVG +P +QRQANL
Sbjct: 683 ----ERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQANL 738
Query: 744 YALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLE 802
AL RA ++E T F+GL RF+R I+++ E +DL ++ ++ V LMTIH SKGLE
Sbjct: 739 RALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLE 798
Query: 803 FKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQ 862
F VF + + F++ D+ +L ++ G G K+I P ++S TLP
Sbjct: 799 FPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIH-----------PKWRISYPTLPLI 847
Query: 863 LNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGS-QEKLGDQYDGKSENNHLPVADRE 921
K++LR LSE++R+LYVA+TR+++KLYLVG +EKL + ++ + + D E
Sbjct: 848 AMKKKLRRELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYE 907
Query: 922 H-----YLTFQDWLLAIE-------AAYAADEL-----HFKTSFITDEDLTEDKMGSLEA 964
YL F L A DE+ F+ S+++ DL + +
Sbjct: 908 RFQAKSYLDFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGE 967
Query: 965 EQAYDADNLKDNRQSDDITRALDMLEAV-EKL--NQHYKAAIHLPTVRTPSQIKKFYEPV 1021
E+ D L + I A + + V E+L + YK A + T ++ S++K+ E
Sbjct: 968 ER---HDRLVQIQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYE 1024
Query: 1022 METEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLS---EQVSLEDI 1078
E +++ S Q F+ P F G+++H +MQ + L+ E+ L +
Sbjct: 1025 DEYGDRSLIRPS-QEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTRTPEKNELSRL 1083
Query: 1079 LTALAELS-VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM-LQAD---- 1132
L L E + E+ + AI+ D IL FF T KL A +V RE PF M L A
Sbjct: 1084 LDRLVEKELLTEDQRAAIEEDDILAFFDTEIGQKLF--GARRVEREVPFNMTLSAKEVYP 1141
Query: 1133 --PASGEDYVVRGIIDGYILFDNRIVLFDYKTDK--------FTNSQAI-KERYRGQMTL 1181
++ E +++GIID ++ L DYKTD+ F ++ I ++RY Q+ L
Sbjct: 1142 DLESADEPVLIQGIIDCLFETEDGFYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQL 1201
Query: 1182 YAQAL 1186
YA+A+
Sbjct: 1202 YARAV 1206
>gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
gi|47526411|ref|YP_017760.1| atp-dependent nuclease, subunit a [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184081|ref|YP_027333.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [Bacillus
anthracis str. A2012]
gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
Length = 1241
Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 376/1259 (29%), Positives = 628/1259 (49%), Gaps = 153/1259 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSD-DDLQRMILALH 189
Query: 206 DFSQATDNPQRW---LLENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++W L+E + T +D +++ ++VK L T ++ +R T+L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQ---HIRKATEL 246
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQL-----QDWVLHFDSLYG-------RDGLGKLAND 308
A T Q L ++ L + W ++++ R D
Sbjct: 247 AMLPDGPAPRIET--LQADLALLGTLSAAARESWTSVYEAMQNVSWQTLKRIKKSDYNED 304
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
I + S + VK L L + + +QD P+L+ L F++
Sbjct: 305 IVKQVDSLRNKAKDEVK-----KLQEELFSRRPESFLRDFQDMH-PVLEKLVQLVKVFTE 358
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEN--------DAIRQLYIDKYHEVMVDEYQDNNH 420
++ K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N
Sbjct: 359 RFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNF 418
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILL 475
QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L
Sbjct: 419 VQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDL 478
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+NFRS+ EVL TN +F +M E VGEI YD +L G+S YP+ E
Sbjct: 479 AKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAS-----YPEGEDVAAELLC 533
Query: 536 KDQQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLL 581
Q +++ ++ ++ E +L+A+ I + + V++ D +L
Sbjct: 534 IQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVKYRDFVIL 593
Query: 582 VSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLR 641
+ S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LR
Sbjct: 594 LRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLR 652
Query: 642 SPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETF 701
SP+ ++++LA L K + YE M + G + + + L KL+ F+
Sbjct: 653 SPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---KELHDKLEWFYNLL 705
Query: 702 LSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGL 761
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL
Sbjct: 706 QGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGL 765
Query: 762 SRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 766 FRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDL 825
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
+L + G G ++I P ++ TL KR++++ ++E+MR+L
Sbjct: 826 MKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVL 874
Query: 881 YVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW-------- 929
YVA+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 875 YVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWIAPSLYRH 934
Query: 930 -----LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNL 973
LL + DE++ + TS+ + E + E+K LEA + A L
Sbjct: 935 RDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPL 994
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEG--VEVMQ 1031
+ R+ + R + E + K ++ ++IK+ Y+ ++ ++ ++
Sbjct: 995 ESERKEEVYDRLMWKYGYGEATSHRAKQSV--------TEIKRNYQSEEGSDNAFIKKLR 1046
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE-- 1089
QT+P+F + A++ G++VH +MQ + L + +++E + +A + +E
Sbjct: 1047 APIQTRPRFMEKKGLTYAER-----GTAVHAVMQHVDLKKPITVEILQEQIAGMVNKELL 1101
Query: 1090 --NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--------DPASGEDY 1139
+ I ++K++ FF S LGK + A A V RE PF M+ A SGE
Sbjct: 1102 TFEQAEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGESGESI 1159
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDK--------FTNSQAIKE-RYRGQMTLYAQALSQS 1189
+V+G+ID I ++ I L D+KTD F ++ I E RY+ Q++LYA+AL +S
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218
>gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
Length = 1241
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 376/1255 (29%), Positives = 623/1255 (49%), Gaps = 145/1255 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSD-DDLQRMILALH 189
Query: 206 DFSQATDNPQRW---LLENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++W L+E + T +D +++ ++VK L T ++ ++ L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQHIRKATELAML 249
Query: 261 ED---------YKQVTAKGT-PTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
D V GT +AA + + E +Q+ + + +L R D+
Sbjct: 250 PDGPAPRIETLQADVALLGTLSSAARESWTSVYEAMQN--VSWQTL-KRIKKSDYNEDVV 306
Query: 311 TLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQY 370
+ S + VK L L K + +QD P+L+ L F++++
Sbjct: 307 KQVDSLRNKAKDEVK-----KLQEELFSRKPESFLRDFQDMH-PVLEKLVQLVKVFTERF 360
Query: 371 LQAKMQENAFEFSDIAHFAIQILEEN--------DAIRQLYIDKYHEVMVDEYQDNNHTQ 422
K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N Q
Sbjct: 361 QAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRNKFAEVLVDEYQDTNFVQ 420
Query: 423 ERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKE 477
E +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L +
Sbjct: 421 ESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDLAK 480
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
NFRS+ EVL TN +F +M E VGEI YD +L G++ YP+ E
Sbjct: 481 NFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAT-----YPEGEDVAAELLCIQ 535
Query: 538 QQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLLVS 583
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L+
Sbjct: 536 QTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKNDSMRPVQYRDFVILLR 595
Query: 584 SRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LRSP
Sbjct: 596 SMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSP 654
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+ +++LA L K + YE M + G + + + L KL+ F+
Sbjct: 655 IVGLSDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE---QELHDKLEWFYNLLQG 707
Query: 704 WREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSR 763
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA +E T F+GL R
Sbjct: 708 WREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFR 767
Query: 764 FIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTS 822
F+R I++ILE +D+ + ++ V +MTIHKSKGLEF VF+ + ++F+ QD+
Sbjct: 768 FLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMK 827
Query: 823 PLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYV 882
+L + G G ++I P ++ TL KR++++ ++E+MR+LYV
Sbjct: 828 RFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYV 876
Query: 883 AMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHYLTFQDW---------- 929
A+TR+++KL L+G K + +++ D + + LP R + DW
Sbjct: 877 ALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRD 936
Query: 930 ---LLAIEAAYAADELH-FKTSF----------ITDEDLTEDKMGSLEAEQAYDADNLKD 975
LL + DE++ + TS+ + E + E+K LEA + A L+
Sbjct: 937 SEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVPLQS 996
Query: 976 NRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQ 1035
R+ + R + Y+ A ++ ++IK+ Y+ EG +
Sbjct: 997 ERKEEVYDRLM--------WKYGYEDATSHRAKQSVTEIKRNYQ---SEEGSDNAFIKKL 1045
Query: 1036 TKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE----NV 1091
P P+F +K G++VH +MQ + L + +++E + +A + +E
Sbjct: 1046 RAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELLTFEQ 1105
Query: 1092 KKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY--------VVRG 1143
+ I ++K++ FF S LGK + A A V RE PF M+ A + +D+ +V+G
Sbjct: 1106 AEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQG 1163
Query: 1144 IIDGYILFDNRIVLFDYKTDK--------FTNSQAIKE-RYRGQMTLYAQALSQS 1189
+ID I ++ I L D+KTD F ++ I E RY+ Q++LYA+AL +S
Sbjct: 1164 VIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1218
>gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 1217
Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats.
Identities = 380/1250 (30%), Positives = 614/1250 (49%), Gaps = 134/1250 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N +
Sbjct: 228 AYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPN-VT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y +HE++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTLDGDGTGRRI 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYDESDHPVN-LKVLV- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVFDMKTGSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V K +SE+MRL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAY----------KAVAEKKLVSEEMRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAI 1003
F+ ED + ++ Y D + +D R+++ LE ++ N+ KA I
Sbjct: 924 FEKDIAQIEDSSRP---NVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQI 980
Query: 1004 --------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKK 1048
P+ ++ S++K+ YE E ++ +E P+F S++
Sbjct: 981 KHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQ 1040
Query: 1049 AKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHF 1103
K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+ F
Sbjct: 1041 GKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDIRMDEIMTF 1100
Query: 1104 FQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVLF 1158
S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1101 IN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFV 1158
Query: 1159 DYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1159 DYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300]
gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757]
Length = 1217
Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats.
Identities = 380/1250 (30%), Positives = 618/1250 (49%), Gaps = 134/1250 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP+ WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPKNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N +
Sbjct: 228 AYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPN-VT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRI 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVN-LKVLV- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V + ++EL +SE+MRL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAYR------AVAEKEL----VSEEMRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAI 1003
F+ ED + ++ Y D + +D R+++ LE ++ N+ KA I
Sbjct: 924 FEKDIAQIEDSSRP---NVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQI 980
Query: 1004 --------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKK 1048
P+ ++ S++K+ YE E ++ +E P+F S++
Sbjct: 981 KHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQ 1040
Query: 1049 AKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHF 1103
K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+ F
Sbjct: 1041 GKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTF 1100
Query: 1104 FQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVLF 1158
S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1101 IN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFV 1158
Query: 1159 DYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1159 DYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
Length = 1217
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 380/1250 (30%), Positives = 617/1250 (49%), Gaps = 134/1250 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N +
Sbjct: 228 AYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPN-VT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRI 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVN-LKVLV- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V + ++EL +SE+MRL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAYR------AVAEKEL----VSEEMRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAI 1003
F+ ED + ++ Y D + +D R+++ LE ++ N+ KA I
Sbjct: 924 FEKDIAQIEDSSRP---NVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQI 980
Query: 1004 --------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKK 1048
P+ ++ S++K+ YE E ++ +E P+F S++
Sbjct: 981 KHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQ 1040
Query: 1049 AKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHF 1103
K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+ F
Sbjct: 1041 GKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTF 1100
Query: 1104 FQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVLF 1158
S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1101 IN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFV 1158
Query: 1159 DYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1159 DYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
Length = 1217
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 381/1250 (30%), Positives = 617/1250 (49%), Gaps = 134/1250 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQILTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N I
Sbjct: 228 AYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPN-IT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALKDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ +
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRM 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD++ QL G+ + +P N +VLI
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVN-LKVLI- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTRSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV + L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLALSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V + ++EL +SE+MRL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAYR------AVAEKEL----VSEEMRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAI 1003
F+ ED + ++ Y D + +D R+++ LE ++ N+ KA I
Sbjct: 924 FEKDIAQVEDSSRP---NVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQI 980
Query: 1004 --------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKK 1048
P+ ++ S++K+ YE E ++ +E P+F S++
Sbjct: 981 KHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQ 1040
Query: 1049 AKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHF 1103
K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+ F
Sbjct: 1041 GKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTF 1100
Query: 1104 FQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVLF 1158
S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1101 IN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFV 1158
Query: 1159 DYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1159 DYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 1217
Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats.
Identities = 380/1251 (30%), Positives = 619/1251 (49%), Gaps = 136/1251 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N +
Sbjct: 228 AYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPN-VT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRI 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVN-LKVLV- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V + ++EL +SE+MRL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAYR------AVAEKEL----VSEEMRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMG-SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAA 1002
F+ ED + + S+ + + + DN + R+++ LE ++ N+ KA
Sbjct: 924 FEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNE----YRSVNQLETMQNGNEDVKAQ 979
Query: 1003 I--------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SK 1047
I P+ ++ S++K+ YE E ++ +E P+F S+
Sbjct: 980 IKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSE 1039
Query: 1048 KAKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILH 1102
+ K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+
Sbjct: 1040 QGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMT 1099
Query: 1103 FFQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVL 1157
F S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1100 FIN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYF 1157
Query: 1158 FDYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1158 VDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus MW2]
gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2]
Length = 1217
Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats.
Identities = 379/1251 (30%), Positives = 619/1251 (49%), Gaps = 136/1251 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIEQ--------LQDWVLHFDSLYGRDGLGKLANDIA 310
A AY +HL +IE L+ + L G + +L N +
Sbjct: 228 AYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPN-VT 286
Query: 311 TLIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSF 362
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 287 AKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARI 346
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD
Sbjct: 347 VKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDT 406
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 407 NRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRI 466
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 467 DLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVN-LKVLV- 524
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRND 589
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 -EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQAR 583
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E
Sbjct: 584 NLQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKE 642
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 643 DELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSK 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 DHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++
Sbjct: 755 ELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
Q G+G+ Y D+ +E+ L +V + ++EL +SE++RL+YVA+TR++
Sbjct: 815 QFGLGMDYF-DVDKEMAFPSLASVAYR------AVAEKEL----VSEEIRLVYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELH 943
++LYL+G+ +K + + S H+ V +R + L ++A D+L
Sbjct: 864 EQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLK 923
Query: 944 FKTSFITDEDLTEDKMG-SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAA 1002
F+ ED + + S+ + + + DN + R+++ LE ++ N+ KA
Sbjct: 924 FEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNE----YRSVNQLETMQNGNEDVKAQ 979
Query: 1003 I--------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SK 1047
I P+ ++ S++K+ YE E ++ +E P+F S+
Sbjct: 980 IKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSE 1039
Query: 1048 KAKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILH 1102
+ K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+
Sbjct: 1040 QGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMT 1099
Query: 1103 FFQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVL 1157
F S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1100 FIN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYF 1157
Query: 1158 FDYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1158 VDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|15923957|ref|NP_371491.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus
subsp. aureus Mu50]
gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus
N315]
gi|148267401|ref|YP_001246344.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9]
gi|150393454|ref|YP_001316129.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1]
gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus
Mu3]
gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315]
gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus
subsp. aureus Mu50]
gi|147740470|gb|ABQ48768.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9]
gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1]
gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 1217
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 382/1250 (30%), Positives = 619/1250 (49%), Gaps = 134/1250 (10%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-GVTIDQLFISTFTVKAAGEL 87
T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KILR G+ +D+L + TFT +A E+
Sbjct: 13 TDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREM 72
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K R++++I E A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 73 KHRVDQRIQEASIADPANA---HLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNF 129
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + + Y D A F +L + +R D FR II ++Y F
Sbjct: 130 RTSSEAENILLLEQTIDEVIEQHYDILDPA--FIELTEQLSSDRSDD-QFRMIIKQLYFF 186
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
S A NP WL +Q V + Q+ L ++ +TDL
Sbjct: 187 SVANPNPTNWL------------------DQLVTPYEEEAQQAQL-IQLLTDLSKVFITA 227
Query: 268 AKGTPTAAYQ---------RHLKMIE---QLQDWVLH---FDSLYGRDG-LGKLANDIAT 311
A AY +HL +IE +L VL D Y D G ++
Sbjct: 228 AYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTA 287
Query: 312 LIPSGNDVTV-----AGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSFT 363
I N++ V A ++Y ++SL +++ + + + Q P ++ L
Sbjct: 288 KIKEANEMMVDALEDAKLQYKKYKSLIDKVKNDYFSREADDLKADMQQLAPRVKYLARIV 347
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNN 419
D ++ + K +N +FSD HFA+QIL D I + Y + E++VDEYQD N
Sbjct: 348 KDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTN 407
Query: 420 HTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLIL 474
QE++L + G N FMVGD+KQSIY+FRQADP +F +K++ F + G+ I
Sbjct: 408 RVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRID 467
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYD 534
L +NFRS+ EVL TN +F H+MDE VGE+ YD+ QL G+ + +P N +VL+
Sbjct: 468 LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVN-LKVLV-- 524
Query: 535 TKDQQNQDLAVEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRNDG 590
DQ++ DL + + +VK + + ++ + ++DI +L S +
Sbjct: 525 EADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARN 584
Query: 591 ILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDED 650
+ Q F + IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F ED
Sbjct: 585 LQQAFKNEDIPFHVNSRE-GYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKED 643
Query: 651 DLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL 710
+LA++ + + D + Y+ + N N + L+ KL F S++++S
Sbjct: 644 ELAQIRILSPNDDY---FYQSIVNYINDEAADAILVD-----KLKMFLSDIQSYQQYSKD 695
Query: 711 NSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
+ +Y LI K YND + Y L R+ANLY L +A FE + F+GL +FIR ID+
Sbjct: 696 HPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDE 755
Query: 771 ILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
++E D + V P N V +MTIH SKGLEF +V + K F+ +D+ P+IL++Q
Sbjct: 756 LIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQ 815
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
G+G+ Y D+ +E+ L +V + ++EL +SE+MRL+YVA+TR+++
Sbjct: 816 FGLGMDYF-DVDKEMAFPSLASVAYK------AVAEKEL----VSEEMRLVYVALTRAKE 864
Query: 890 KLYLVGKGSQEKLGDQYDGKS-ENNHLPVADR----EHYLTFQDWLLAIEAAYAADELHF 944
+LYL+G+ +K + + S H+ V +R + L ++A D+L F
Sbjct: 865 QLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKF 924
Query: 945 KTSFITDEDLTEDKMG-SLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAI 1003
+ ED + + S+ + + + DN + R+++ LE ++ N+ KA I
Sbjct: 925 EKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNE----YRSVNQLETMQNGNEDVKAQI 980
Query: 1004 --------------HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKK 1048
P+ ++ S++K+ YE E ++ +E P+F S++
Sbjct: 981 KHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQ 1040
Query: 1049 AKQDPTALGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHF 1103
K+ +G+ +H +MQ L + +V L + L + +E + KK I++D+I+ F
Sbjct: 1041 GKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTF 1100
Query: 1104 FQTSQLGKLIQANADKVYREAPFAMLQA----DPASGEDY-VVRGIIDGYILFDNRIVLF 1158
S+L +I A A++VYRE PF + QA P ED +++G+ID + D
Sbjct: 1101 IN-SELYSII-AEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFV 1158
Query: 1159 DYKTDKFTNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD F + +K +Y+ QM Y L N ++V YL
Sbjct: 1159 DYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILN-KEVKGYL 1207
>gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus
criceti]
Length = 495
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 258/498 (51%), Positives = 327/498 (65%), Gaps = 38/498 (7%)
Query: 6 FLTDQEIASLQIQE---AQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIM 62
FL+ QEI L+ QE +Q++++ RTPEQIEAIY++GTN+LVSASAGSGKTFVM+ERI+
Sbjct: 6 FLSPQEIEELKAQEMTLSQAEERLPRTPEQIEAIYSNGTNVLVSASAGSGKTFVMVERII 65
Query: 63 DKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTAD 122
D + RGV I QLFISTFTVKAAGELKER+E K+ +++ T D ALKQ LS QL +Q AD
Sbjct: 66 DMLKRGVNISQLFISTFTVKAAGELKERIEDKLIKEIAKTQDQALKQHLSAQLGDIQNAD 125
Query: 123 IGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTK 182
IGTMDAF QKLV YGY+LG+SPNFRI+QDKSEQD+LKN+V+ DLFT Y TG + +F +
Sbjct: 126 IGTMDAFAQKLVNTYGYSLGVSPNFRIMQDKSEQDILKNEVYGDLFTSYMTGPDSHIFKQ 185
Query: 183 LVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGA----NTYKDFSAIPEQ 238
VRNF G KDS+ FRQ++Y ++ FSQ+T +P+ WL E FLK + D P
Sbjct: 186 TVRNFTGQGKDSTGFRQVVYAVHAFSQSTADPKAWLEETFLKSYQVDFDQQVDAYLAPFL 245
Query: 239 EVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYG 298
+ +DF L + RD +G +Y ++L +E L + + + +
Sbjct: 246 QEQDFGKILDQAQGFFRD-------HLSAVRGQFKKSY-KYLANVENLLEALANVNLQAP 297
Query: 299 RDGLGKLANDIA--TLIPSGNDVTVAGVKYPVFRSLHSRL---------------RGLKH 341
D L + + T I G +++ K ++ + R L
Sbjct: 298 LDQLQEQLQAVKAITSISRGLTMSIGSCKDESLKAFATDYNQERPNYLAPILDLERALST 357
Query: 342 LETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQ 401
+E + YQ Q+LPLL+VLQ+F LDFS QYL+ K QENAFEFSDIAH AI+ILE ++ IRQ
Sbjct: 358 VEALRIYQPQALPLLKVLQAFVLDFSAQYLERKKQENAFEFSDIAHLAIEILETDEPIRQ 417
Query: 402 LYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFK 461
LY DKYHEVMVDEYQDNNH QER+L+LLSNG NRFMVGDIKQSIYRFRQADP IF KF+
Sbjct: 418 LYQDKYHEVMVDEYQDNNHMQERLLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQAKFQ 477
Query: 462 ------DFQEHPEHGKLI 473
DFQ G LI
Sbjct: 478 VYDRSEDFQIGKSQGLLI 495
>gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
NG80-2]
gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
NG80-2]
Length = 1242
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 377/1282 (29%), Positives = 614/1282 (47%), Gaps = 153/1282 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T EQ +AI G +ILV+A+AGSGKT V++ERI+ K+ V ID+L + TFT AA
Sbjct: 15 TDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + +L + L QL L A I T+ +F ++ +Y Y L + P
Sbjct: 75 EMKARIGEALERELA---NRPHSLHLRRQLSLLNRASISTLHSFCLDVIRKYYYLLDLDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
+FRI + + L ++ + + L +Y D E F +V + G+R D+ +++I +Y
Sbjct: 132 SFRIADETEIELLKEDVLEELLEEEYGKADN-ERFFAVVDAYTGDRSDAE-LQEMILALY 189
Query: 206 DFSQATDNPQRWLLE-------------NFLKGANTYKDFSAIPEQEVKDFLNTLQETAL 252
+FS++ P WL + L A +A+ K F+ AL
Sbjct: 190 EFSRSHPAPDEWLADLVSMYDVDEQTNVETLPPARYIAQHAAMELAAAKRFIGL--ALAL 247
Query: 253 ALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSL----YGR------DGL 302
A ++ K++ A +R L W + +L +GR DG
Sbjct: 248 AEKESGPKPYEKRLREDMDLIADLERRLS-----GSWDELYHALQSLSFGRLPPCRGDGF 302
Query: 303 GKLANDIATLIPSGNDVTVAGVKYPVFRSLHSR--LRGLKHLETIFKYQDQSLPLLQVLQ 360
D A + + ++ VF SLH LR ++ ++ P+++ +
Sbjct: 303 DAELIDEAKSLRDQAKKKIEALRDNVF-SLHPSAWLRHMREMK----------PVVETIA 351
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND---------AIRQLYIDKYHEVM 411
+ FS + AK ++ +FSD+ H+ ++IL + D + Y ++ EV+
Sbjct: 352 ALVRRFSAMFEAAKREKGIVDFSDLEHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVL 411
Query: 412 VDEYQDNNHTQERMLELLSNGRNR----FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
VDEYQD N QE +L+L+ G R FMVGD+KQSIYRFR A+P +F K+K F
Sbjct: 412 VDEYQDTNLVQETILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADG 471
Query: 468 EHGKL-ILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN 526
E G + I L NFRS++EVLD TN +F +M EAVGE++YD+ QL G+ YP+
Sbjct: 472 EAGGMKIDLASNFRSRAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGAD-----YPEG 526
Query: 527 ET---QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRL------------HNEE 571
+V+I D + + +++ E + + E +L+A++I + +
Sbjct: 527 TDAVPEVMIID-RQRTSEEDEEETAELEAAELESRLMAEKIKEIVSRPFYVYDRSSGQQR 585
Query: 572 KVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631
+ + DI +LV S T +++ GIP D Y ++ E+ VML L+ IDNP
Sbjct: 586 RAMYRDIVVLVRSMTNAPQMIEQLQAQGIPAAADL-SSGYFQATEISVMLSLLKVIDNPY 644
Query: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME-----NARNGQGQQVQLI 686
D L A+LRSP+F FDE++LA + L + K +E ++ A G+ + +
Sbjct: 645 QDIPLAAVLRSPLFRFDENELAMIRLSD----PKGTFFEALQAFCQKTAETGEEENAK-- 698
Query: 687 TEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYAL 746
K +F WR + SL DLIW++Y D +YD+VG+LP +QRQANL AL
Sbjct: 699 -----EKAISFLNKLEEWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRAL 753
Query: 747 ALRADNFEKTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTIHKSKGLEFKY 805
RA +E T F+GL RF+R I+++ E +DL A + ++ V +MTIH SKGLEF
Sbjct: 754 YDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPI 813
Query: 806 VFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNK 865
VF++ + + F +D+ SP +L ++ G +++ P +++S TLP +
Sbjct: 814 VFLVGLARPFYTRDLHSPYLLDKELGFAARFVH-----------PRLRISYPTLPLLAIQ 862
Query: 866 RELRLATLSEQMRLLYVAMTRSEKKLYLVGK-GSQEKLGDQYDGKSENNH--LPVADREH 922
+ RL L+E+MR+LYVA+TR+++KLYL+ +K +++ G + + LP R
Sbjct: 863 VKKRLELLAEEMRILYVALTRAKEKLYLLASVNDADKEIEKWKGVAAESGWLLPDDVRAS 922
Query: 923 YLTFQDWL----------LAIEAAYAADELHFKTSFITDEDLTEDKMGSLE-AEQAYDAD 971
++ DW+ ++ DE+ S E ++ K+ + E + D
Sbjct: 923 ARSYLDWIGRALIRHRDGRSLVEVNRPDEIASHPSVWRFEIVSAAKLRNAEVSTDREDGG 982
Query: 972 NLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE-PVMETEGVEVM 1030
L Q + + E + VR + + E + E +
Sbjct: 983 ALVALEQGRPVPTQGEWEEEARRRLLWRYRYGKETVVRAKQSVSELKEQQALFGEQADEW 1042
Query: 1031 QTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEE- 1089
T P F P+F ++ P G+++H +M+ L L + I + + L +E
Sbjct: 1043 LPRKGTAPLFSRPRFMQEKTLTPAEKGTALHVVMRHLDLHAPMDESSIRSQIIRLVEKEL 1102
Query: 1090 -NVKKAIQVD--KILHFFQTSQLGKLIQANADKVYREAPFAM-LQADP-------ASGED 1138
+ ++A VD I+ FF T +G+ + A A +VYRE PF++ L AD SG
Sbjct: 1103 LSAEQAETVDAAAIVAFFATD-IGRRLCA-AREVYREVPFSLGLPADELYGSEGMESGRR 1160
Query: 1139 YVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKE---------RYRGQMTLYAQALSQS 1189
+V+G++D + V+ DYKTD+ T A ++ RY GQM LY +A+ Q
Sbjct: 1161 LLVQGVVDCVFADERGYVVIDYKTDEVTGRFAGQKEEATRFLLGRYGGQMRLYRRAIEQI 1220
Query: 1190 YNIQQVDSYLILLGGEKLEVVE 1211
+ + + YL GE VE
Sbjct: 1221 WRVPVAECYLYSFDGEYFLAVE 1242
>gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 1219
Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats.
Identities = 381/1238 (30%), Positives = 619/1238 (50%), Gaps = 137/1238 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T Q ++IY G +ILV+A+AGSGKT V++ERI+ +I+R + +D+L + TFT +A E+
Sbjct: 15 TDNQWKSIYAKGQDILVAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASAREM 74
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
K+R++++I E D A L Q + + A I T+ +F KL+ Q+ L I PNF
Sbjct: 75 KQRVDQRIQEASIENPDNA---HLKNQRVKIHQAQISTLHSFCLKLIQQHYDVLDIDPNF 131
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
R + LL+ + + L Y D F L + +R D R I ++Y F
Sbjct: 132 RTSSEAENILLLEQTIDEVLERHYDILDPH--FIDLTEQLSSDRNDD-QLRNTIKEMYYF 188
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETAL--------ALRDVTD 259
S A NP WL + Y+D E + + N L + A+ AL D
Sbjct: 189 SVANPNPLNWLQHL----STPYED-----ESQQETLFNLLNDLAMIFMNSALEALNKSYD 239
Query: 260 LEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLH--------FDSLY-GRDGLGKLANDIA 310
L + K +R + E ++ +L+ F+S + ++ K AN++
Sbjct: 240 LFMMLEEVDKQVAVLDKERRF-LAEAMEGGLLNTQKIAEHQFESRFPAKNKKIKEANEM- 297
Query: 311 TLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSL--------PLLQVLQSF 362
+I + +D Y +++L S+++ E F + L P + L
Sbjct: 298 -MIDAYDD---GKKHYDDYKALVSKVQ-----EDYFSREAADLKTDMQRLAPRVAYLAQV 348
Query: 363 TLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDN 418
T D +Q+ Q K N +FSD HFA++IL +++ I +Y ++ E++VDEYQD
Sbjct: 349 TADVIEQFNQKKRSRNLLDFSDYEHFALRILMDSNGNPSEIADMYRKQFEEILVDEYQDT 408
Query: 419 NHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLI 473
N QE+++ + G N FMVGD+KQSIY+FRQADP +F K+ F + EHG I
Sbjct: 409 NRVQEKIIACIKRGDEADGNLFMVGDVKQSIYKFRQADPSLFIGKYNRFTLDGSEHGMRI 468
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L +NFRS+ EVL TN +F H+MDEAVGEI+YDD QL G+ P+ + +LI
Sbjct: 469 DLSQNFRSREEVLTTTNYLFKHMMDEAVGEIVYDDAAQLYYGAPFDHKPH-DVQLNMLIE 527
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAK-EIIRLHNEE--KVQFEDITLLVSSRTRNDG 590
D N E ++ I K++++ EI + E+ K ++DI +L S +
Sbjct: 528 DASSDLN---GSEQEAEYIVQQVEKIMSQHEIYDIKTEQYRKPSYKDIVILERSYGQARK 584
Query: 591 ILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDED 650
I Q F D+ IP + E Y + EV ++L LR+IDNPL D LV L+RS ++ F ED
Sbjct: 585 IQQAFKDHNIPFHVNSKE-GYFEQTEVQLILSFLRTIDNPLQDIYLVGLMRSVIYQFTED 643
Query: 651 DLARLALQNLPDQH-KQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
+L+ + + + D + Q++ M N + + L AKL +F E ++++S
Sbjct: 644 ELSNIRVFSPNDDYFYQSIKHYMAN---------DVANKKLVAKLASFLEDIEQYQDYSQ 694
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+ +Y LI K YND + Y + + R+ANLY L +A FE + F+GL +FIR ID
Sbjct: 695 SHPVYQLIDKFYNDHYVIQYFSGIIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFID 754
Query: 770 KILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+++E D + + P + V +MTIH SKGLEF +V + +KF D+ P+IL++
Sbjct: 755 ELIERGKDFGEENIVGPNDDVVRMMTIHSSKGLEFPFVIYSGLSRKFRRDDLHRPVILNQ 814
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
G+G+ Y D++ L L +V + ++E+ +SE+MRL+YVA+TR++
Sbjct: 815 SYGLGMAYY-DVESNLSYPSLSSVTYK------AIAEKEM----VSEEMRLIYVALTRAK 863
Query: 889 KKLYLVGKGSQEKLGDQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAA----DELH 943
++L+L+G+ EK Q++ S +HLPV+ R D + I A Y + +EL
Sbjct: 864 EQLFLIGRVKDEKTLSQFEQVSVSESHLPVSYRITAQRPIDMIYPILAKYQSSSLPNELR 923
Query: 944 FKTSFITDED--------LTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKL 995
F+ + I D D L D + +E D + + R DI EA++
Sbjct: 924 FEQT-IEDVDQAMRPYVQLNTDFYEDIASETVTD---VSEQRTVADIEMNHSKNEALQAQ 979
Query: 996 NQH-------YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKK 1048
+ Y++AI P+ ++ S++K+ +E + ++ +E P F +
Sbjct: 980 IHNQLSYEYPYQSAIEKPSKQSVSELKRQHETEQSDTNYDRVRQYRIGSTSYERPAFLSR 1039
Query: 1049 AKQ-DPTALGSSVHELMQRLHLSEQVSLEDILTAL-----AELSVEENVKKAIQVDKILH 1102
+KQ +G+ +H +MQ L ++ E+ + L A+ + E+ K+ I+ D I +
Sbjct: 1040 SKQRKANEIGTLMHTVMQHLPFNKDRLTEEDVNRLVDHLIAQHIIPEDAKQDIRFDDIYN 1099
Query: 1103 FFQTSQLGKLIQANADKVYREAPFAMLQAD----PASGED-YVVRGIIDGYILFDNRIVL 1157
F S L +LI A +D++YRE PF + Q + S ED +++G+ID + + +
Sbjct: 1100 FI-ASDLYQLI-AESDEIYRELPFVVNQNEVDHNKHSEEDASIIQGMIDLIFVKEGQYYF 1157
Query: 1158 FDYKTDKFTNSQ---------AIKERYRGQMTLYAQAL 1186
DYKTD F + ++ERY+ QM Y L
Sbjct: 1158 VDYKTDAFNRRRNMSDEEIGAQLRERYKVQMNHYRNTL 1195
>gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
Length = 1218
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 371/1230 (30%), Positives = 608/1230 (49%), Gaps = 119/1230 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T Q ++IY G +ILV+A+AGSGKT V++ERI+ +ILR V +D+L + TFT +A E+
Sbjct: 12 TDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREM 71
Query: 88 KERLEKKITE-QLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
K R++K+I E + N+ LK Q + + A I T+ +F KL+ Q+ L I P+
Sbjct: 72 KHRVDKRIQEASFKDPNNEHLKN----QRIKIHQAQISTLHSFCLKLIQQHYDVLDIDPH 127
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
FR + LL+ + D L Y D F +L + +R D FR II ++Y
Sbjct: 128 FRTSSEAENILLLEQTIDDVLEQHYDKLDPH--FIELTEQLSSDRNDD-QFRSIIKQLYF 184
Query: 207 FSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALA-----LRDVTDLE 261
FS A P WL N L A YK+ + +Q++ +N L + L+ DL
Sbjct: 185 FSIANPQPFEWL--NQL--AQPYKEENK--QQQLMQLINDLAMIFMKAGYEELQKSYDLF 238
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGND--- 318
+ K +R + + + ++ VL+ D + + + + I + I N+
Sbjct: 239 SMMESVDKQLEVIETER-MFITKAIEGKVLNTDVITQHEFMSRFPA-INSKIKEANEGME 296
Query: 319 --VTVAGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQA 373
+ A Y ++SL +++ ++ E + + Q P + L D + +
Sbjct: 297 DALNEAKQHYDKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQ 356
Query: 374 KMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
K N +FSD HFA++IL D I + Y + + E++VDEYQD N QE++L +
Sbjct: 357 KRSRNILDFSDYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI 416
Query: 430 SNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH-PEHGKLILLKENFRSQSE 484
G N FMVGD+KQSIY+FRQADP +F +K+ F E G I L +NFRS+ E
Sbjct: 417 KTGEEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGLRIDLSQNFRSRQE 476
Query: 485 VLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLA 544
VL TN +F H+MDE VGEI YDD QL G+ ++ +P Q+ +N DL
Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHP---VQLRALVEASSENSDLT 533
Query: 545 VEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
+ + +VK + ++ K ++DI +L S + + Q F + I
Sbjct: 534 GSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQARNLQQAFKNNDI 593
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
P + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E++LA + + +
Sbjct: 594 PFHVNSKE-GYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEEELAEIRVVS- 651
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
H Y+ ++N + +L+ KL+ F + ++ +S +Y LI K
Sbjct: 652 --PHDDYFYQSIKNYMIDEKADSRLVD-----KLNRFIQDIQKYQNYSQSQPVYQLIDKF 704
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YND F Y L + R+ANLY L +A FE + F+GL +FIR ID++++ + D +
Sbjct: 705 YNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELIDRKKDFGE 764
Query: 781 VEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
V P N V +MTIH SKGLEF +V + KKF+ D+ +P+IL++Q G+G+ Y D
Sbjct: 765 ENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYGLGMDYF-D 823
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+ +++ L +V +N++EL +SE+MRL+YVA+TR++++L LVG+
Sbjct: 824 VNKDMAFPSLASVAYR------AINEKEL----ISEEMRLIYVALTRAKEQLILVGRVKD 873
Query: 900 EKLGDQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDK 958
EK +Y+ + + H+ V +R LT + + I A H S D+ D
Sbjct: 874 EKSLIKYEQLAVSDTHIAVNER---LTATNPFVLIYGVLAK---HQSPSLPNDQRFERD- 926
Query: 959 MGSLEAEQAYDADNLKDNRQ--------SDDITRALDMLEAVEKLNQHYKAAIHL----- 1005
+ L +E + D+ + +D+ R ++ L+A+ N+ K IH
Sbjct: 927 IDQLNSEVKPRVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYD 986
Query: 1006 ---------PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKKAKQDPTA 1055
P+ ++ S++K+ E + ++ +E P+F ++ K+
Sbjct: 987 YPFKVNTMKPSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANE 1046
Query: 1056 LGSSVHELMQRLHLSEQVSLEDIL-----TALAELSVEENVKKAIQVDKILHFFQTSQLG 1110
+G+ +H +MQ L EQ +D L + + ++E+ K+ I++D+I+HF
Sbjct: 1047 IGTLMHTVMQHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYM 1106
Query: 1111 KLIQANADKVYREAPFAM--LQADPASGED---YVVRGIIDGYILFDNRIVLFDYKTDKF 1165
++ Q AD VY E PF + ++ D + ED +++G+ID D + DYKTD F
Sbjct: 1107 EIAQ--ADNVYTELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAF 1164
Query: 1166 TNSQA---------IKERYRGQMTLYAQAL 1186
+ +KE+Y+ QMT Y L
Sbjct: 1165 NRRKGMSDEEIGNQLKEKYQIQMTYYRNTL 1194
>gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
12228]
gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
12228]
Length = 1224
Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats.
Identities = 371/1230 (30%), Positives = 607/1230 (49%), Gaps = 119/1230 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T Q ++IY G +ILV+A+AGSGKT V++ERI+ +ILR V +D+L + TFT +A E+
Sbjct: 18 TDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREM 77
Query: 88 KERLEKKITE-QLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
K R++K+I E + N+ LK Q + + A I T+ +F KL+ Q+ L I P+
Sbjct: 78 KHRVDKRIQEASFKDPNNEHLKN----QRIKIHQAQISTLHSFCLKLIQQHYDVLDIDPH 133
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
FR + LL+ + D L Y D F +L + +R D FR II ++Y
Sbjct: 134 FRTSSEAENILLLEQTIDDVLEQHYDKLDPH--FIELTEQLSSDRNDD-QFRSIIKQLYF 190
Query: 207 FSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALA-----LRDVTDLE 261
FS A P WL N L A YK+ + +Q++ +N L + L+ DL
Sbjct: 191 FSIANPQPFEWL--NQL--AQPYKEENK--QQQLMQLINDLAMIFMKAGYEELQKSYDLF 244
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGND--- 318
+ K +R + + + ++ VL+ D + + + + I + I N+
Sbjct: 245 SMMESVDKQLEVIETER-MFITKAIEGKVLNTDVITQHEFMSRFPA-INSKIKEANEGME 302
Query: 319 --VTVAGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQA 373
+ A Y ++SL +++ ++ E + + Q P + L D + +
Sbjct: 303 DALNEAKQHYDKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQ 362
Query: 374 KMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
K N +FSD HFA+ IL D I + Y + + E++VDEYQD N QE++L +
Sbjct: 363 KRSRNILDFSDYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI 422
Query: 430 SNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH-PEHGKLILLKENFRSQSE 484
G N FMVGD+KQSIY+FRQADP +F +K+ F E G I L +NFRS+ E
Sbjct: 423 KTGEEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGLRIDLSQNFRSRQE 482
Query: 485 VLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLA 544
VL TN +F H+MDE VGEI YDD QL G+ ++ +P Q+ +N DL
Sbjct: 483 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHP---VQLRALVEASSENSDLT 539
Query: 545 VEDDSNQISLGEVKLVAKEI----IRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
+ + +VK + ++ K ++DI +L S + + Q F + I
Sbjct: 540 GSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQARNLQQAFKNNDI 599
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
P + E Y + EV ++L LR+IDNPL D LV L+RS ++ F E++LA + + +
Sbjct: 600 PFHVNSKE-GYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEEELAEIRVVS- 657
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
H Y+ ++N + +L+ KL+ F + ++ +S +Y LI K
Sbjct: 658 --PHDDYFYQSIKNYMIDEKADSRLVD-----KLNRFIQDIQKYQNYSQSQPVYQLIDKF 710
Query: 721 YNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
YND F Y L + R+ANLY L +A FE + F+GL +FIR ID++++ + D +
Sbjct: 711 YNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELIDRKKDFGE 770
Query: 781 VEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIAD 839
V P N V +MTIH SKGLEF +V + KKF+ D+ +P+IL++Q G+G+ Y D
Sbjct: 771 ENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYGLGMDYF-D 829
Query: 840 MKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ 899
+ +++ L +V +N++EL +SE+MRL+YVA+TR++++L LVG+
Sbjct: 830 VNKDMAFPSLASVAYR------AINEKEL----ISEEMRLIYVALTRAKEQLILVGRVKD 879
Query: 900 EKLGDQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDK 958
EK +Y+ + + H+ V +R LT + + I A H S D+ D
Sbjct: 880 EKSLIKYEQLAVSDTHIAVNER---LTATNPFVLIYGVLAK---HQSPSLPNDQRFERD- 932
Query: 959 MGSLEAEQAYDADNLKDNRQ--------SDDITRALDMLEAVEKLNQHYKAAIHL----- 1005
+ L +E + D+ + +D+ R ++ L+A+ N+ K IH
Sbjct: 933 IDQLNSEVKPRVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYD 992
Query: 1006 ---------PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF-SKKAKQDPTA 1055
P+ ++ S++K+ E + ++ +E P+F ++ K+
Sbjct: 993 YPFKVNTMKPSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANE 1052
Query: 1056 LGSSVHELMQRLHLSEQVSLEDIL-----TALAELSVEENVKKAIQVDKILHFFQTSQLG 1110
+G+ +H +MQ L EQ +D L + + ++E+ K+ I++D+I+HF
Sbjct: 1053 IGTLMHTVMQHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYM 1112
Query: 1111 KLIQANADKVYREAPFAM--LQADPASGED---YVVRGIIDGYILFDNRIVLFDYKTDKF 1165
++ Q AD VY E PF + ++ D + ED +++G+ID D + DYKTD F
Sbjct: 1113 EIAQ--ADNVYTELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAF 1170
Query: 1166 TNSQA---------IKERYRGQMTLYAQAL 1186
+ +KE+Y+ QMT Y L
Sbjct: 1171 NRRKGMSDEEIGNQLKEKYQIQMTYYRNTL 1200
>gi|153953342|ref|YP_001394107.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
Length = 1235
Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats.
Identities = 364/1277 (28%), Positives = 622/1277 (48%), Gaps = 155/1277 (12%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T Q AI+T N+LV+A AG+GKT V++ERI+ K++ V ID+L + TFT A
Sbjct: 4 KWTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+KER+ + +++ L L + L QL L ++I T+ +F K++ + + +
Sbjct: 64 ASEMKERVGEALSKLLELN---CTSKNLQRQLALLNQSNIMTIHSFCLKVIKNNFHRIDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D +E LLK D +LF + + F L + G K+ S + I+
Sbjct: 121 DPNFRICDD-TESKLLKQDALLELFEEKYEEENLG-FLNLADGYGG--KNDSKLQDIVLS 176
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQ-----------EVKDFLNTLQETAL 252
+Y+FSQ + P+RWL ++ LK N DF + E+K N ++
Sbjct: 177 LYEFSQGSPWPKRWL-QDVLKDFNLGSDFDFGDTKWAKVLMHNVTVELKGCKNKMKNILN 235
Query: 253 ALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLA-NDIAT 311
+ ++ LE Y + ++ ++ I++L + + +D + RD KL+ N + +
Sbjct: 236 TIENIEGLEHYLE---------PFKSDIESIDKLIN-ITTWDEI--RDEFIKLSFNKLPS 283
Query: 312 -----LIPSGNDVTVAGVKYPVFRSLHS-RLRGLKHLETIFKYQDQSLPLLQVLQSFTLD 365
L+ S D + V + L S R + + I++ + PL++ L +D
Sbjct: 284 KRTDPLVKSYKD-KARNTRDEVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMD 342
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMVDEYQD 417
F ++Y K + N +F+DI HF ++IL D + Y + + E+ +DEYQD
Sbjct: 343 FYEKYHNKKSERNMIDFNDIEHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQD 402
Query: 418 NNHTQERMLELLSNGR---NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP-EHGKLI 473
+N QE ++ ++S N FMVGD+KQSIYRFRQA P++F +K+ + E + I
Sbjct: 403 SNEVQEVIMNMISRKNIYANLFMVGDVKQSIYRFRQARPELFLEKYNSYDEKEGSKNRKI 462
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN---ETQV 530
L ENFRS+ E++DA N +F +M VGE+ Y + L SSA+ P+ N + ++
Sbjct: 463 KLSENFRSRKEIIDAINYIFKQIMCREVGELDYGEEECL--KSSARYEPFEGNCGGDVEL 520
Query: 531 LIYDTKDQQNQDLAVEDDSNQISLG-EVKLVAKEIIRL-----------------HNEEK 572
+ D K+ +N+ ++ ++ E +LVA +I L N
Sbjct: 521 HVVDKKENENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRS 580
Query: 573 VQFEDITLLV-SSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631
+ ++DI +L+ +++ ++ ++ GIP+ D Y +++E+ ++ L+ IDNPL
Sbjct: 581 IMYKDIVILMRATQNWAPAFVEELNNSGIPVFADT-SVGYFQAIEIKTIISLLQIIDNPL 639
Query: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQ---QVQLITE 688
D +ALLRSP+ F +DL L + N + + YE ++ + + ++ I E
Sbjct: 640 QDIPFIALLRSPIGGFSPEDLIDLRVVN----REISFYEILKAIKEHSLELKYSLEHIDE 695
Query: 689 ALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALAL 748
L K++ FF WR + + + IW IY + YY +VG++P QRQANL L
Sbjct: 696 RLEYKVEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFE 755
Query: 749 RADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVF 807
RA ++ +KGL FI I+K+ + D+ + ++ +N V +M+IHKSKGLEF +
Sbjct: 756 RAKQYKNISYKGLFNFINFINKLKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVII 815
Query: 808 ILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRE 867
+ K+F++ D+ ++ ++ G+G +Y+ + +S T+ Q+ KR+
Sbjct: 816 LSGAGKRFNLTDINKSVLFHKELGLGPEYVNSERH-----------ISYPTIVKQVLKRK 864
Query: 868 LRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYD-----GKSENNHLPVADREH 922
L++ TLSE+MR+LYVA TR+++KL + G+ + + + + E + LP +
Sbjct: 865 LKMETLSEEMRILYVAFTRAKEKLIIT--GTVDNIENTFQRWCEAAYCEEDKLPEYSLIN 922
Query: 923 YLTFQDWLLAIEAAYAADEL-------HFKTSFITDEDLTEDKMGSLEAEQAYDADNLK- 974
F DW+ A + E+ + + IT +D S Y DN K
Sbjct: 923 SRNFLDWIGPAVARHPCGEIIRKVCPFEYNLNLITGDD-------SKWKVFVYSKDNFKS 975
Query: 975 --DNRQSDDITRALDML-----------EAVEKLNQHYK--AAIHLPTVRTPSQIKKFYE 1019
D +DI + L E +LN YK + + + S++K+ ++
Sbjct: 976 TLDENIDEDIIGKIKSLELDNNKEIYKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFK 1035
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
+ G+E M+ Y KP F + P+ G +H +MQ + + + S E I
Sbjct: 1036 LIDTENGIEFMEPIYLKKPAF----LRESKGLTPSERGIVMHLVMQHIDIDKVGSYEQIK 1091
Query: 1080 TALAELSVEENVK----KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM------- 1128
+ +L E + K+I V KI+ FF S++G ++ ++ VYRE PF M
Sbjct: 1092 EQVDKLVFREFITEAEAKSISVYKIIKFFN-SEIGIRMK-KSNNVYREVPFYMEIESTEL 1149
Query: 1129 ---LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQA 1185
L E +++GIID Y +N ++L DYKTD + +IKE+Y+ Q+ Y +A
Sbjct: 1150 YKQLPQHIYRDEKVLIQGIIDCYFEENNELILVDYKTDHVGDIDSIKEKYQVQIYYYGRA 1209
Query: 1186 LSQSYNIQQVDSYLILL 1202
L + + YL L
Sbjct: 1210 LEKLTGKKVKKKYLYLF 1226
>gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911]
gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911]
Length = 1254
Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats.
Identities = 374/1281 (29%), Positives = 627/1281 (48%), Gaps = 154/1281 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI SG +ILV+A+AGSGKT V++ERI++KI+ V +D+L + TFT +A
Sbjct: 16 TDDQWKAIMASGQDILVAAAAGSGKTAVLVERIINKIVSREEPVNVDELLVVTFTNASAA 75
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ R+ + + + + +A L +QL L A I T+ +F +++ +Y Y + I P
Sbjct: 76 EMRHRIGEALEKAINRDPQSA---HLRKQLSLLSRASISTLHSFCLEVIRKYYYLIDIDP 132
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI D++E LL+++V ++LF + + E F +LV F +R D++ + II ++Y
Sbjct: 133 GFRI-ADETEGQLLRDEVLEELFEEEYGKENNEDFYRLVDAFTSDRSDTA-LQDIIRELY 190
Query: 206 DFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQ 265
DF+++ P ++L K ++ Y+ S +E+ + L + L L L +
Sbjct: 191 DFARSNPAPDQYLD----KISDMYEVSSDAKLEELPFMSSVLFDIGLQLEGARQLLENAL 246
Query: 266 VTAK--GTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAG 323
AK G P + ++ I ++ + D L N+ L G G
Sbjct: 247 ELAKTPGGPAPRAENYMDDIRAVETLIAA-----NNDSWSSL-NEAMQLWSFGRAKNCKG 300
Query: 324 VKYP---VFRSLHSRLRGLKHLETI----FKYQDQSL--------PLLQVLQSFTLDFSK 368
+Y V ++ R + K ++ + F + +S P + VL FS+
Sbjct: 301 DEYDPDLVKQAQKYRDKAKKMIQDLQAEFFSRRPESFIRDIGEMKPHIDVLVRLVRSFSE 360
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQ----------LYIDKYHEVMVDEYQDN 418
++ K ++ +F+D+ HF ++IL + A ++ Y D + EV+VDEYQD
Sbjct: 361 KFNSVKSEKGLVDFADLEHFCLEILSDPSARKEGAILPSEPALTYRDHFREVLVDEYQDT 420
Query: 419 NHTQERMLELLSN----GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKL-I 473
N QE +L+L++ N FMVGD+KQSIYRFR A+P +F K+ F E L I
Sbjct: 421 NMVQEAILQLVTKEGEETGNLFMVGDVKQSIYRFRLAEPNLFLGKYTRFTVDGEKTGLKI 480
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSS-AQKIPYPQNETQVLI 532
L NFRS+ EVLD TN +F +M + VGEI YD +LV G+S + +PYP E ++
Sbjct: 481 DLARNFRSRKEVLDGTNFLFKQVMGKKVGEIDYDQAAELVKGASYPEDLPYPV-ELHLID 539
Query: 533 YDTKDQQNQDLAVEDDSN------QISLGEVKLVAKEIIRLHNEEKVQFE---------- 576
D +++ A E D+ + S E +L+A++I + + K +E
Sbjct: 540 LDGQEKAESGEADETDAGYDLEDLEQSQHEARLMAEKIKEMLSSGKKVYEPKSGAYRPLM 599
Query: 577 --DITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDY 634
DI +L+ S T I++ F GIP+ + Y ++ E+ +M+ L+ IDNP D
Sbjct: 600 YRDIVILLRSMTWAPQIMEEFKKQGIPIYANL-SSGYFEATEITIMMSLLKVIDNPHQDI 658
Query: 635 ALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKL 694
L ++LRSP+ +E++LA++ + + + + + E ++G L K+
Sbjct: 659 PLASVLRSPIVGLNEEELAQIRIADKKGSYYEAMKAFCETKKSGD----------LYDKV 708
Query: 695 DAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFE 754
FF WR + L +LIW++Y D +YD+ G +P +QRQANL AL RA +E
Sbjct: 709 KPFFLDIAEWRSMARKGGLSELIWQLYRDTHFYDFAGGMPGGKQRQANLRALYDRARQYE 768
Query: 755 KTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
+T F+GL RF+R I+++ E +DL A + ++ V +MTIH SKGLEF VF + +
Sbjct: 769 ETSFRGLFRFLRFIERMRERGDDLGAARALGEQEDVVRMMTIHSSKGLEFPVVFAAGLAR 828
Query: 814 KFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATL 873
+F+ D+ +L ++ G KY+ P ++S +LP KR+ ++ L
Sbjct: 829 QFNTMDLKKTYLLDKEYGFAAKYVN-----------PEKRISYPSLPQLAFKRKKKMEML 877
Query: 874 SEQMRLLYVAMTRSEKKLYLVG--KGSQEKL-GDQYDGKSENNHLPVADREHYLTFQDWL 930
+E+MR+LYVA+TR+++ L+LV K + +KL G Q K ++ L DR ++ DW+
Sbjct: 878 AEEMRVLYVALTRAKEHLFLVASVKNADKKLAGWQQGAKKDSWLLDEYDRAAASSYLDWI 937
Query: 931 LAI--------------EAAYAADE----LH--------FKTSFITDEDLTEDKMGSLEA 964
+ E A A + LH + + +D D+ G
Sbjct: 938 GSALIRHRDGEPLRSGQEDAAAGSQGEIALHPSSWSVEVRQAAVTPAQDEDSDEAGEQWI 997
Query: 965 EQAYDADNL-KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVME 1023
+ Y+ + ++ + I +L Y +A + ++ S++K+ E E
Sbjct: 998 DSVYEGKPVPAESPFKEKIKNSLSW-------QYSYPSAASHKSKQSVSEMKRQSEVKDE 1050
Query: 1024 TEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALA 1083
G ++++ KP P+F ++ P G+++H +MQ LS V+ E I LA
Sbjct: 1051 ESGSDLVRN--LKKPILNRPRFMQEKSMTPAERGTAMHMVMQHADLSNPVTEESIERQLA 1108
Query: 1084 ELSVEENVK----KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM-LQADPA---- 1134
E+ E + + I I FFQ S LG+ ++ A ++ RE PF + L A A
Sbjct: 1109 EMKDRELLTDEQVQVIDPALIAGFFQ-SPLGQRMR-KAARIQREVPFNLALPARTAYPDW 1166
Query: 1135 --SGEDYVVRGIIDGYILFDNRIVLFDYKTD----KFTNS-----QAIKERYRGQMTLYA 1183
+ E +V+GIID ++ VL DYK+D ++T +K RY Q++LYA
Sbjct: 1167 KGTEEPVLVQGIIDCIFEDEHGTVLLDYKSDSIHGRYTGGFEEAMPVLKRRYDVQISLYA 1226
Query: 1184 QALSQSYNIQQVDSYLILLGG 1204
+A + YL G
Sbjct: 1227 KAYEAITKDPVDERYLFFFDG 1247
>gi|150014906|ref|YP_001307160.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
Length = 1245
Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats.
Identities = 360/1260 (28%), Positives = 636/1260 (50%), Gaps = 144/1260 (11%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T EQ+ AI T N+LV+A+AGSGKT V++ERI+ I V ID+L + TFT A
Sbjct: 5 KWTDEQLSAIETRNCNLLVAAAAGSGKTAVLVERIIRIITNEENPVDIDKLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I+++L + + L QL L A+I TM +F ++ + + +
Sbjct: 65 AAEMRERIADAISKELE---NNPRSKNLQRQLTLLNRANITTMHSFCLDVIKNNYHRIDL 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
P+FRI D++E L+K++V ++LF D Y D FT LV F+ + D+ N + ++
Sbjct: 122 DPSFRI-GDQTEGILIKSEVIEELFEDKYEEEDIG--FTNLVEIFSSYKNDN-NLKNLVL 177
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRD--VTDL 260
+Y+F+ + P++WL+ + A + + + E + +++ L ++ D V L
Sbjct: 178 DLYNFTMSGPWPEKWLINS----AEAF-NIKQLDELDRTNWVRVLAQSVKIELDGYVKML 232
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSG---- 316
E +VT+K Y +L M +L ++S +GL + N ++++ S
Sbjct: 233 EKAIEVTSKTDGLEPYMDNLLM--ELSYIKKAYEST--DNGLEAMFNSLSSVQFSRLKSI 288
Query: 317 ---------NDVTVAGVKYPVFRSLHSRLRGLKHL--ETIFKYQDQSLPLLQVLQSFTLD 365
+ TV ++ V + + L + + + + S P ++ L L+
Sbjct: 289 KKDKVSDELSQNTVKKIRDDVKKGISELLNNAYSVNPQQMLRNIQGSYPYIKKLIELVLE 348
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEVMVDEYQD 417
FS ++ + K + N +F+D+ H ++IL + D +I + + + EV+VDEYQD
Sbjct: 349 FSARFSKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSIAMNFKEYFDEVLVDEYQD 408
Query: 418 NNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI 473
+N+ QE ++ L+S + N FMVGD+KQSIYRFRQA P++F +K+ + + I
Sbjct: 409 SNNVQETIINLVSRKNDDNPNVFMVGDVKQSIYRFRQAKPELFIEKYNTYDSSNGVNRKI 468
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLI- 532
L +NFRS+ E++D N +F +M E VGE+ Y D L G+ ++ + I
Sbjct: 469 QLYKNFRSRREIIDGVNYIFKEVMSEVVGELEYTDEEALNLGADFKENKFKDTIVGGPIE 528
Query: 533 YDTKDQQNQDLAVEDDSNQISLGEV----KLVAKEIIRLHNEEK---------------- 572
+ D+ + + VED+ Q + V ++VAK I L ++ +
Sbjct: 529 VNIIDKSHNETVVEDNEEQEEINNVILEGRIVAKRIKELMSKSEDEQIFKVLDKESGEYR 588
Query: 573 -VQFEDITLLV-SSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNP 630
+++ DI +L+ +++ ++ +L GIP+ D G Y +S+E+ ++ L+ +DNP
Sbjct: 589 PLKYRDIVILLRATKNWSEPLLDELSAEGIPVYADTG-SGYFESIEIRTIISLLKVVDNP 647
Query: 631 LNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEAL 690
+ D +++++RSP+ F ++++ + L + +N+ E A N + ++ L
Sbjct: 648 MQDIPVISVMRSPIMGFSAEEISDIRLVKKDNYFYENIKYISEEAYNSINESY---SDVL 704
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
AK F + WR S+ ++ + IW +Y D YY YVG++P RQANL L RA
Sbjct: 705 IAKCKYFINSVDKWRNKSIYMAIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRA 764
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFIL 809
FEKT FKGL FI I+K++++ D+ +V ++ V +M+IHKSKGLEF VF+
Sbjct: 765 RQFEKTSFKGLFNFINFINKLIKSSGDMGSAQVLGENEDVVRIMSIHKSKGLEFPVVFLC 824
Query: 810 NIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELR 869
+ K F++ D+ ++ + G+G +I K + S+ TL + K++++
Sbjct: 825 GLGKNFNLMDLNKSILYHDELGLGPDFIDIGK-----------RFSIGTLAKESIKKKMK 873
Query: 870 LATLSEQMRLLYVAMTRSEKKLYLVGK-GSQEKLGDQYDGKS--ENNHLPVADREHYLTF 926
TLSE+MR+LYVA TR+++KL + G G+ EK +++ G + + N + ++ ++
Sbjct: 874 FETLSEEMRILYVACTRAKEKLIMTGTVGNLEKSAEKWLGSASLDYNRISPSEVLKGKSY 933
Query: 927 QDWLL----------AIEAAYAADEL-------HFKTSFITDEDLTED-KMGSLEAEQAY 968
DW+ + ++ + L +K SF DL + K LE + Y
Sbjct: 934 LDWICMSLCQHRDGSVLSESFGTENLILKDDNSRWKVSFWNKGDLIDKTKTEVLEQGEGY 993
Query: 969 DADNLKDNRQSDDITRALDMLEAVEKLNQH---YKAAIHLPTVRTPSQIKKFY-EPVMET 1024
+ + +N+ D+ + E V+K+ + +KA+ + + + S +K+ + E +T
Sbjct: 994 EL-TIINNKPYDNY-----LYEEVDKILSYKYPFKASTTIKSNISVSDLKRRHAEEDYDT 1047
Query: 1025 EGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAE 1084
E ++ + + PKF +K P+ G++VH +M+++ + S E+I L E
Sbjct: 1048 E--QLYREKVKVVPKF----LQEKKGLTPSEKGTAVHFVMKKIDFNRVSSTEEIKEQLHE 1101
Query: 1085 LSVEENV----KKAIQVDKILHFFQTSQLGKLI---QANADKVYREAPF----AMLQADP 1133
L +E + K I KIL FF+ S LGK I +K+YRE PF + L+ D
Sbjct: 1102 LFEKEFLLSEELKVINPTKILSFFR-SDLGKKILDLNCRGEKIYREIPFYTEISSLEVDK 1160
Query: 1134 A-----SGEDYVVRGIIDGYILFDNRIVLFDYKTDKFT--NSQAIKERYRGQMTLYAQAL 1186
E ++GIID + + I+L DYKTD + KE+YR Q+ Y+ A+
Sbjct: 1161 TLDNIYKDEKIRLQGIIDCFFEYKGDIILIDYKTDYIMEGHEDEFKEKYRKQLDYYSDAI 1220
>gi|125974531|ref|YP_001038441.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
gi|125714756|gb|ABN53248.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
Length = 1251
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 376/1293 (29%), Positives = 627/1293 (48%), Gaps = 166/1293 (12%)
Query: 24 KKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFT 80
++ K T EQ EAI + ++LVSA+AG+GKT V++ERI+ KI V ID+L + TFT
Sbjct: 3 ERTKWTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFT 62
Query: 81 VKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYT 140
AA E++ER+ + I+E+L +A Q QL L A I T+ +F +++
Sbjct: 63 NAAATEMRERIAQAISEKLEENPGSANIQ---RQLTLLGKACITTIHSFCLEVIRSNFQQ 119
Query: 141 LGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQI 200
+ I P FRI D++E L+K + D++F + + + F +L+ + GNR D + + +
Sbjct: 120 INIDPGFRI-ADETESRLMKLEALDEVFEEQYENENEDFF-ELLECYGGNRDDRA-LQDM 176
Query: 201 IYKIYDFSQATDNPQRWLLE-----NFLKGANTYKD-FSAIPEQEVKDFLNTLQET---A 251
+ +YDF Q++ P+ WL + N G + K + ++ VK L L+E A
Sbjct: 177 VLNLYDFIQSSPWPEEWLEKMTESMNIPDGTDFGKTLWGSVLLSSVKIELEGLKEMISRA 236
Query: 252 LA-LRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
L L+D + LE Y+ V + L E W F++L G + A
Sbjct: 237 LEILKDASGLEKYRAVYMEDLANVDALLKLLNEESEMQWDRIFNALQGFE--------FA 288
Query: 311 TLIPSGNDVTV--AGVKYPVFRSLHSRLRGLKHLETIFKYQDQSL-------PLLQVLQS 361
TL G +V + + + R+R + + I ++ + P ++ L +
Sbjct: 289 TLPRCGREVDKDKQEIVKKIRDDVKQRIRKFRE-KVITSVSNEIISDLKALYPKMKCLAN 347
Query: 362 FTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMVD 413
+++Y + K +++ +F+D+ HF ++IL E + Y +++ E++VD
Sbjct: 348 LVKQLAEKYAEKKNRKSVVDFNDLEHFCLEILTERKEDGSIIPSRTAISYRERFAEILVD 407
Query: 414 EYQDNNHTQERMLELLSNGRNR----FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH 469
EYQD+N QE ++ ++S G + FMVGD+KQSIYRFRQA P++F +K+ + P+
Sbjct: 408 EYQDSNLVQETIINMISKGDDASPGVFMVGDVKQSIYRFRQARPELFLEKYNTYL--PDK 465
Query: 470 G---KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQL-------------- 512
G + I+L NFRS+ EV+DA N +F +M GE+ Y D L
Sbjct: 466 GSPCRKIILSRNFRSRREVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDI 525
Query: 513 -VAGSSAQKIPYPQNETQVLIYDTKDQQNQ--DLAVEDDSNQISLG-EVKLVAKEIIRL- 567
V G + ++E + ++ + ++ + D ED+ S+ E +LV + I+ L
Sbjct: 526 TVGGEVEFHLIQTEDEDKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELM 585
Query: 568 ---------------HNE-EKVQFEDITLLV-SSRTRNDGILQTFDDYGIPLVTDGGEQN 610
NE +V++ D+ +L+ ++R + + GIP+ D G
Sbjct: 586 KPDENGRYFSVFDKAKNEYRRVEYRDVVILLRTTRNWAEVFVDELSVMGIPVFADTG-TG 644
Query: 611 YLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYE 670
+ K+VEV VML L+ IDNPL D L+++LRSP+ F D+LA L L + K L++
Sbjct: 645 FFKTVEVQVMLSLLQIIDNPLQDIPLLSVLRSPIVGFTTDELAELRLVD----KKALLFD 700
Query: 671 KMEN-ARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDY 729
++ A +GQG+ + K AF E WRE SL S L+W++YND YY
Sbjct: 701 ALKKLAESGQGEA--------AGKASAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSI 752
Query: 730 VGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKN 788
VG++P EQRQANL L RA FE+T +KGL FI IDK+ ++ D+ ++ + N
Sbjct: 753 VGAMPAGEQRQANLRILYERARQFEETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDN 812
Query: 789 AVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKL 848
V +M+IHKSKGLEF V + KKF++QDM ++L + G G + ++ KL
Sbjct: 813 VVRIMSIHKSKGLEFPVVIVAGCGKKFNLQDMNKSILLHHELGFG-------PDVVDHKL 865
Query: 849 LPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQY 906
++S ++ Q + +++ TLSE+MR+LYVA+TR+ +KL + G K ++ +
Sbjct: 866 ----RLSWPSVAKQAIREKIKAETLSEEMRILYVALTRAREKLVITGAVKNVRKAVEKWL 921
Query: 907 DGKS-ENNHLPVADREHYLTFQDWLLAIEAAY--------AADELHFKTSFITDEDLTED 957
D S + + L D + DW+ + F+ I D +
Sbjct: 922 DSASVQKSRLSAYDMLSGANYLDWIGPALLRHKNCGGLRDCVGSAGFRGLLIDDPSVWSV 981
Query: 958 KMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVE------------KLNQHYKAAIHL 1005
K+ + Q + + + + + + LD LE E + Y A +
Sbjct: 982 KIWNKTDVQ---SSGVSEEQGESEFIKWLDSLEKEEPSEYAEETARRLSWSYPYVKASKV 1038
Query: 1006 PTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTA-LGSSVHELM 1064
P + +++K+ Y V+ +VMQ + P F ++ K A G+ +H +M
Sbjct: 1039 PAKVSVTELKRRYNEVVSE---DVMQFPDYMPVLVKKPMFLEEKKGLTYAEKGTILHFVM 1095
Query: 1065 QRLHLSEQVSLEDILTALAELSVEE--NVKKAIQVDKI-LHFFQTSQLGKLIQANADKVY 1121
Q L EDI + E+ ++ ++A VD + F S LGK + A + +
Sbjct: 1096 QHLDYGR----EDIEAQIEEMVAKDLLTPQQAQSVDAARIRRFLNSPLGKRMLA-SKSIN 1150
Query: 1122 REAPFAM----------LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFT--NSQ 1169
RE PF + ++ + GE +++G++D Y + IVL DYKTD N +
Sbjct: 1151 REVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGIVLVDYKTDYVAPGNVE 1210
Query: 1170 AIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
I+ERY+ Q+ YA+AL + + Y+ L
Sbjct: 1211 TIRERYKVQILYYARALEMLTGKKVKEKYIYLF 1243
>gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
HTA426]
gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
HTA426]
Length = 1242
Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats.
Identities = 376/1287 (29%), Positives = 613/1287 (47%), Gaps = 163/1287 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T EQ +AI G +ILV+A+AGSGKT V++ERI+ K+ V ID+L + TFT AA
Sbjct: 15 TDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + +L + L QL L A I T+ +F ++ +Y Y L + P
Sbjct: 75 EMKARIGEALERELAKRPHSL---HLRRQLSLLPRAAISTLHSFCLDVIRKYYYLLDLDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
+FRI + + L ++ + + L +Y D E F +V + G+R D+ +++I +Y
Sbjct: 132 SFRIADETEIELLKEDVLEELLEEEYGKPDN-ERFFAVVDAYTGDRSDAE-LQEMIVALY 189
Query: 206 DFSQATDNPQRWLLE-NFLKGANTYKDFSAIP----------------------EQEVKD 242
+FS++ P WL + + D +P E+ +
Sbjct: 190 EFSRSHPEPDEWLAGLTSMYDVDERTDIKTLPAARYIAQHAAMELAAARRLIRRALELAE 249
Query: 243 FLNTLQETALALRD----VTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYG 298
+ A LR+ +TDLE T P A R LK + + G
Sbjct: 250 EPGGPRPYAERLREDRDMITDLE-----TRLSGPWAELHRALKALS-----FGRLPACRG 299
Query: 299 RDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQV 358
+D +L ++ +L V ++ VF SL + L+H+ + P+++
Sbjct: 300 KDYDERLIDEAKSLRDQAKK-KVEALRDNVF-SLDPSV-WLRHMR-------EMKPIVET 349
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND---------AIRQLYIDKYHE 409
+ + F+ + AK ++ +FSD+ H+ + IL D Y ++ E
Sbjct: 350 IANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGEWQPSPAALEYQAQFDE 409
Query: 410 VMVDEYQDNNHTQERMLELLSNGRNR----FMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
V+VDEYQD N QE +L+L+ G R FMVGD+KQSIYRFR A+P +F K+K F
Sbjct: 410 VLVDEYQDTNLVQEAILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTA 469
Query: 466 HPEHGKL-ILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYP 524
E G + I L NFRS+ EVLD TN +F LM E VGE++YD+ QL G+ YP
Sbjct: 470 DGEEGGMKIDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEAAQLKYGAD-----YP 524
Query: 525 QNET---QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRL------------HN 569
+ E +V+I + + + ++ E + + E +L+AK+I +
Sbjct: 525 EGEDAAPEVMIIN-RQRAAEEDEEEAAEWEAAELEARLMAKKIKEIVSAPFYVYDRSSGQ 583
Query: 570 EEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDN 629
+ + DI +LV S T +++ GIP D Y ++ E+ +ML L+ IDN
Sbjct: 584 PRRAMYRDIVILVRSMTNAPQMIEQLQAQGIPAAAD-LSSGYFQATEISIMLSLLKVIDN 642
Query: 630 PLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEA 689
P D L A+LRSP+F FDE++LA + L + K YE + + R Q+ E
Sbjct: 643 PHQDIPLAAVLRSPLFRFDENELAMIRLAD----PKGTFYEALCSFR----QKPAETKEE 694
Query: 690 LSA--KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALA 747
+A K AF E WR + SL DLIW++Y D +YD+VG+LP QRQANL AL
Sbjct: 695 ANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGRQRQANLRALY 754
Query: 748 LRADNFEKTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTIHKSKGLEFKYV 806
RA +E T F+GL RF+R I+++ E +DL A + ++ V +MTIH SKGLEF V
Sbjct: 755 DRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIMTIHSSKGLEFPIV 814
Query: 807 FILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKR 866
F+ + + F +D+ P +L ++ G +++ P +++S TLP +
Sbjct: 815 FLAGLARPFHTRDLHHPYLLDKELGFAARFVH-----------PRLRISYPTLPLLAIQT 863
Query: 867 ELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHY 923
+ RL L+E+MR+LYVA+TR+++KLYL+ + +++ SE LP R
Sbjct: 864 KKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRASA 923
Query: 924 LTFQDWL----------LAIEAAYAADELH-----FKTSFITDEDLTEDKMGSLEAEQAY 968
++ DW+ A+ A +E+ ++ + + DL G+ A +
Sbjct: 924 RSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLR----GAEAAREEM 979
Query: 969 DADNLKDNRQSDDITRALDMLEAVEK---LNQHYKAAIHLPTVRTPSQIKKFYEPVMETE 1025
D L Q + + V++ Y+ + ++ S++K+ + + E
Sbjct: 980 DGGVLLALEQGRPVPVEGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKE--QRALFGE 1037
Query: 1026 GVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAEL 1085
+ + T P F P+F ++ P G+++H +M+ L L + I + + L
Sbjct: 1038 QADEWRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESWIRSQIVRL 1097
Query: 1086 SVEENVKKAIQVDKI----LHFFQTSQLGKLIQANADKVYREAPFAM-LQA-------DP 1133
VE+ + A Q + + + F T+ LG+ + A A +V+RE PF++ L+A
Sbjct: 1098 -VEKELLSAEQAEAVDPAAIAAFFTADLGRRLCA-AREVHREVPFSLGLKAAELYGGEGT 1155
Query: 1134 ASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKE---------RYRGQMTLYAQ 1184
SG +V+G+ID + V+ DYKTD+ + A ++ RY QM LY +
Sbjct: 1156 ESGRRVLVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRR 1215
Query: 1185 ALSQSYNIQQVDSYLILLGGEKLEVVE 1211
A+ Q + + YL G + VE
Sbjct: 1216 AIEQIWRAPVAECYLYSFDGGFVVAVE 1242
>gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
Length = 1236
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 376/1273 (29%), Positives = 645/1273 (50%), Gaps = 139/1273 (10%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI G N+LVSA+AGSGKT V++ERI+ I V ID+L + TFT A
Sbjct: 5 KWTKEQQQAIDVHGCNLLVSAAAGSGKTAVLVERIIKMITDIKNPVDIDRLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+KER+ K I ++L T KQ L QL L A I T+ +F + + + + +
Sbjct: 65 ASEMKERIGKAIGKEL--TKHPKSKQ-LQRQLTLLNRASITTIHSFCLETIRNNFHYIDL 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
PNFRI D++E LLK ++ + +F D Y + + F LV ++ N KD + I+
Sbjct: 122 DPNFRI-GDETETVLLKGEIIEGIFEDLYEPENCTQEFLNLVEFYSSN-KDDVALQNIVL 179
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLED 262
+YDF ++ NP++ L ++ + N + ++ + K ++ ++ L+D+ + E
Sbjct: 180 NLYDFVMSSKNPKKQL-QDMAEQFNVDESYNFGESKWAKVLMDDVELELSGLKDMME-EA 237
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLH----FDSLYGRDGLGKLANDIATLIPSGND 318
K + A + + + D +L+ +DSLY +GL ++ + D
Sbjct: 238 LKLINDTNGLDAYLEGFTDELLMINDLILNAKTSWDSLY--NGLSEVKFGRLKTCRNCED 295
Query: 319 VT----VAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSL--------PLLQVLQSFTLDF 366
V ++ V + L ++ + I Y + + P+++ L ++F
Sbjct: 296 KKTQEKVKDIRNKVKKQLQDEIK-----KKITSYSTKEIVTDLRNLYPIMKSLCDLVIEF 350
Query: 367 SKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE--- 423
+Y +AK + +F+D HF ++IL + +L KY E++VDEYQD+N+ QE
Sbjct: 351 MDRYSKAKKERGIIDFNDFEHFCLEILGHEEVALKLR-QKYIEILVDEYQDSNYVQEAII 409
Query: 424 ----RMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGKLILLKE 477
R E N N FMVGD+KQSIYRFRQA P++F +K+ + E+ + K+ L K
Sbjct: 410 NSIARRHEETGNPINVFMVGDVKQSIYRFRQAKPELFLKKYNSYLEGENAKERKVNLFK- 468
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV------- 530
NFRS+ EVLD N +F +M E +GE+ Y D L G+ ++ ++++ V
Sbjct: 469 NFRSRKEVLDGVNFIFKQIMSENIGELEYGDDEALYLGADFEQY---EDKSLVGGPIELN 525
Query: 531 LIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE----------------KVQ 574
LI +KD+ ++ + E++ E + VAK+I L N + V+
Sbjct: 526 LIEKSKDETKEEESEEEEILSNIQVEARFVAKKINELVNPKIGEPFKVYDNELKAYRNVE 585
Query: 575 FEDITLLVSSRTRNDGIL-QTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLND 633
+ DI +L+ S + + + IP D G Y ++VE+ +L L IDNP D
Sbjct: 586 YRDIVVLLRSTSNWAPVFTDEMKENLIPAYADVG-NGYFETVEIKTILSLLEIIDNPRQD 644
Query: 634 YALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAK 693
L+A+LRSP+ +F ++L + L+N + Y + + + + I K
Sbjct: 645 IPLIAVLRSPIASFTPEELIDIRLEN----KDGDFYGGLLKVASSEDRDDNWIL--FKRK 698
Query: 694 LDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNF 753
++F E WRE S+ + + IW +Y + YY YVG+L QRQANL L RA +
Sbjct: 699 CNSFLEKLNYWREKSIHMPIDEFIWYLYMETGYYGYVGALAGGMQRQANLKILFQRARQY 758
Query: 754 EKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNID 812
EKT +KGL FI I+++ + D+ ++ N V +M+IHKSKGLEF + + +
Sbjct: 759 EKTSYKGLFNFINFINRLKVSSGDMGSAKILGENDNVVRIMSIHKSKGLEFPVIILSALG 818
Query: 813 KKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLAT 872
K F++QD+ ++ + G G YI +L+++++ +T+P K++++L +
Sbjct: 819 KNFNMQDLNKRILYHDELGFGPDYI-----DLDKRII------YETVPKSALKKKIKLES 867
Query: 873 LSEQMRLLYVAMTRSEKKLYLVG-----KGSQEKLGDQYDGKSEN-NHLPVADREHYLTF 926
LSE+MR+LYVA+TR+++KL L G + S +K +G+ + V ++YL
Sbjct: 868 LSEEMRILYVALTRAKEKLILTGAVNDIEKSAKKWSYALEGEDYKLSQYQVMTGKNYL-- 925
Query: 927 QDWLLAIEAAY---------AADELHFKTSFITDED----LTEDKMGSLEAEQAYDADNL 973
DW+ + + A E+ K + ++DE T++ G L+ + + L
Sbjct: 926 -DWICPVIMRHKDGEVLRELAGIEIFEKVNLLSDESSWKITTDNISGILQNDDETNEIIL 984
Query: 974 KDNRQSDDITRALDMLEAV-EKLNQHYK--AAIHLPTVRTPSQIKKFYEPVMETEGVEVM 1030
+D ++ +DI + + + E+LN YK + LPT+ T +++K+ M + M
Sbjct: 985 EDIKEIEDIEESSSYYDEINERLNFKYKYIESSKLPTLLTVTELKRMKNSSMYEDYSRDM 1044
Query: 1031 QTSYQTKPKFELPQFSKKAKQDPTA-LGSSVHELMQRLHLSEQVSLEDILTALAELSVEE 1089
T K P F +K K+ A G+++H +MQ+++ SE++++EDI + + +E
Sbjct: 1045 YTPKLVKK----PMFMEKDKKLKGAEKGTAMHAVMQKINYSEELTIEDINRQMETMVEKE 1100
Query: 1090 NVKK----AIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM----------LQADPAS 1135
+ K +++ +KIL+FF+++ +L++ A+ V RE PF M L +
Sbjct: 1101 FITKEQADSVEAEKILNFFKSNIGKRLLK--AENVRRETPFHMELKSTEIYESLPKEIYE 1158
Query: 1136 GEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQ--AIKERYRGQMTLYAQALSQSYNIQ 1193
E+ +++GIID Y ++ IVL DYK+D F Q AI ++Y+ Q+ YA+A+ +
Sbjct: 1159 NENIMIQGIIDCYFEEEDGIVLLDYKSDYFKEGQEEAIIKKYKVQIDYYARAIEELTGKV 1218
Query: 1194 QVDSYLILLGGEK 1206
+ YL L G+K
Sbjct: 1219 VKEKYLYLFYGDK 1231
>gi|106894892|ref|ZP_01362004.1| UvrD/REP helicase [Clostridium sp. OhILAs]
gi|106773787|gb|EAT30359.1| UvrD/REP helicase [Clostridium sp. OhILAs]
Length = 1197
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 372/1251 (29%), Positives = 615/1251 (49%), Gaps = 143/1251 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T EQ AI G+N+LV+A+AGSGKT V++ERI+ IL+ + ID+L I TFT AAGE+
Sbjct: 5 TKEQQAAIDARGSNLLVAAAAGSGKTAVLVERIIQIILKDRIDIDRLLIVTFTNAAAGEM 64
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
+ER+ I ++ T ++ L QL L A I T+ +F +V ++ + + + P F
Sbjct: 65 RERIAGAIMTEME--KKTGGEEHLRRQLSLLNRASITTVHSFCIDVVRRHFHMIDVDPGF 122
Query: 148 RILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
RI D +E ++K + ++LF D Y G+ E F LV F G R+D + ++ KIY
Sbjct: 123 RI-GDVTETSIMKLEALEELFEDEYEKGN--EEFFNLVEAFGGTREDRP-LQDLVLKIYG 178
Query: 207 FSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQE-TALALRDVTDLEDYKQ 265
F Q+ P+ WL E A + + F+ P ++ T+++ + L+ DL + Q
Sbjct: 179 FIQSQPYPEIWLRERVEDFALSIEAFNQSP------WIRTIKKRMGILLKGAMDLLEIAQ 232
Query: 266 VTA--KGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAG 323
A G P + L ++Q+++ LY L N I N +
Sbjct: 233 TIALEPGGPDVYEEAILSDLDQIKE-------LYH-----SLENPITDFYEQLNCINFIR 280
Query: 324 VKY-----PVFRSLHSRLRG-----LKHL-ETIFKYQDQSL--------PLLQVLQSFTL 364
+K P+ + LR +K + E IF + PL+ L +
Sbjct: 281 LKTSKDSDPILKEECKDLRDKAKDIVKDIRENIFNVSPEEYVEDLNRLYPLMDYLYRLVI 340
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
F+++Y + K + +F+D+ HFA++IL ND Q Y +K+ + VDEYQD+N QE
Sbjct: 341 GFTERYTEKKTDKGIVDFNDLEHFALRILA-NDLAAQEYREKFEYIFVDEYQDSNIVQET 399
Query: 425 MLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH-GKLILLKENFRSQS 483
+++ + N FMVGD+KQSIYRFR ADP +F +K++ F H + I L +NFRS+
Sbjct: 400 LIQSIKREDNLFMVGDVKQSIYRFRLADPTLFIEKYETFGTEEGHINRRIDLAKNFRSRG 459
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+VL+ N +F H+M + +GEI YD+ L G+ + I P E LI + +
Sbjct: 460 QVLNGVNYIFKHMMSKELGEIDYDERAALYQGTEFEPIQDPSIEIN-LIEKNMEIDEEME 518
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEE----------KVQFEDITLLV-SSRTRNDGIL 592
+ I + E ++VAK I L NEE K++++DI +L+ +++ L
Sbjct: 519 EELQELADIEV-EARIVAKRIKALLNEEIYDPRVEGYRKIEYKDIVVLLRTTQNWAQSFL 577
Query: 593 QTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDL 652
+ F GIP D Y +++EV + L+ LR IDN D L++++RSP+ F ++L
Sbjct: 578 EVFVREGIPAYAD-ANTGYFEAIEVNMFLNLLRVIDNKRQDIPLLSVMRSPIGDFTTEEL 636
Query: 653 ARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNS 712
+ + + + Y+ +E + V+ T+ L KL +F E W +
Sbjct: 637 IHIRVNDKTGTY----YDAIE-------KYVEEKTDDLKYKLVSFIEKLNQWANDARYIK 685
Query: 713 LYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKIL 772
+ IWK++ D YY YVG++P QRQANL L RA+ FEKT KGL FI+ I+K+
Sbjct: 686 IDQFIWKLFMDTGYYYYVGAMPGGLQRQANLRVLFDRANQFEKTSIKGLFNFIKFIEKLQ 745
Query: 773 ENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNG 831
++ D+ ++ N V +M+IHKSKGLEF V + K F+++D ++ ++L + G
Sbjct: 746 SSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVITAGMGKNFNLRDTSADVLLHKDLG 805
Query: 832 VGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKL 891
+G K+ P ++ DT+ K ++++ +LSE+MR+LYVA TR + KL
Sbjct: 806 LGPKFTD-----------PNLRTYRDTIAKLAMKDQIKIESLSEEMRILYVAFTRPKDKL 854
Query: 892 YLVGKGSQEKLGDQYDGKSE-NNHLPVADREHYLTFQDWL------------------LA 932
+V GS + Q S+ +N + + ++YL DW+ L
Sbjct: 855 IVV--GSIRNIEKQVKKWSKADNVYSLMNAKNYL---DWIGTALVKHPDGQALRELGGLG 909
Query: 933 IEAAY-AADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEA 991
+AA ++ + + + + + ++ + E+ Y L NR+ + E
Sbjct: 910 FDAASDGMEDSEWTINILGRQVIVLEEQDKVLKEEDYREKLLYFNREDFSSGGYTEYKEE 969
Query: 992 VE-KLNQHYK--AAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKK 1048
+E +LN Y ++ +P+ + S IKK + + E + + PKF K
Sbjct: 970 IENRLNWKYDHPHSVQIPSKLSVSDIKKAH--INEIDVIAHQIPILVKSPKF----MEGK 1023
Query: 1049 AKQDPTALGSSVHELMQRLHLSEQVSLEDILTAL----AELSVEENVKKAIQVDKILHFF 1104
G+ +H ++Q L L++ S EDI + A + E K + KIL++F
Sbjct: 1024 TTFTAAERGTVIHFVLQHLDLNKVGSEEDIREQIHWMVARELITEEESKVVDTKKILNYF 1083
Query: 1105 QTSQLGKLIQANADKVYREAPFAMLQADPASGE-----------DYVVRGIIDGYILFDN 1153
S +G+ ++ A KVYRE+PF + + ++GE +V+GIID Y +
Sbjct: 1084 Y-SPIGERMR-KAKKVYRESPFII---EKSAGEVIEGLSDDIEDKLLVQGIIDCYFEEKD 1138
Query: 1154 RIVLFDYKTDKFTNSQ--AIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
++L DYK D N A+ RY Q++LY +AL + + ++YL L
Sbjct: 1139 GLILIDYKNDIVLNGNIAAVVARYELQLSLYREALERITGREVKETYLYLF 1189
>gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
Length = 1246
Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats.
Identities = 386/1280 (30%), Positives = 595/1280 (46%), Gaps = 189/1280 (14%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
+PEQ AI G N+LV+A+AGSGKT V+++RI+D+IL V +D L + TFT AA
Sbjct: 5 SPEQRAAIEARGQNLLVAAAAGSGKTSVLVQRIIDRILDKTAPVNVDALLVVTFTNAAAA 64
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ER+ + +T +L T ++L QLL L A I T+ +F Q +V QY Y L + P
Sbjct: 65 EMRERIAQALTAELAKGERT---RYLERQLLLLNQASISTIHSFCQSVVRQYFYRLDLDP 121
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
FRI + E LL++D + L + Y GD+A F LV ++ G+ +D S+ +I ++
Sbjct: 122 QFRI-AGEGETTLLRSDTLEALLAERYEQGDEA--FLTLVDHY-GDERDDSSLAGLILRL 177
Query: 205 YDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYK 264
Y+F+++ P+ WL + A+ ++ A + E LA R +LE +
Sbjct: 178 YEFARSQPWPEHWLR----RLADAFRLDGAAG-------IGAPWEALLADRIALELERLQ 226
Query: 265 QVTAK--------GTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA-TLIPS 315
A+ G P AAY + L+ DW + R+ LG N + +P+
Sbjct: 227 HKFARLAAEAVRPGNP-AAYVKTLEDDRGQLDWAIAAARHSWRE-LGAALNGLKFGTLPA 284
Query: 316 GNDVTVAGVKY---------PVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDF 366
V A K + + R G E I + Q LPL++ L L F
Sbjct: 285 AKGVDAAVCKRFQERRNTIKSKVKEIAERYFGRPEQELIADMRAQ-LPLVETLIDLVLAF 343
Query: 367 SKQYLQAKMQENAFEFSDIAHFAIQILEENDA---------IRQLYIDKYHEVMVDEYQD 417
+++ +AK + +FSD+ H+ +QIL ++A + +KY EV+VDEYQD
Sbjct: 344 GQRFQEAKKAKGLVDFSDLEHYCLQILLADNATPDNIQPSAVALALREKYEEVLVDEYQD 403
Query: 418 NNHTQERMLELLS--NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHG-KLIL 474
N QE +LEL+S + NRFMVGD+KQSIYRFR A+P +F +K+ + + I
Sbjct: 404 TNAVQETILELVSRPDRPNRFMVGDVKQSIYRFRLAEPGLFLEKYNRYPAAAGGSERRID 463
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVL--- 531
L +NFRS+ +L A N +F+ LM E+ Y L G YP + L
Sbjct: 464 LAQNFRSRPGILAAVNFLFSQLMTPRAAEMGYGAAEALNPGPD-----YPPCDQLTLAGP 518
Query: 532 --------------------IYDTKDQQNQDLAVEDDSNQISL----------GEVKLVA 561
+ D +QQ+ D ++ +N L E L+A
Sbjct: 519 VEVHLINQAEAVAAAPAADVVEDEAEQQDADAGGDEPANSSELVTAQELTAFEREAWLIA 578
Query: 562 KEIIRLHNEEKVQFE------------DITLLVSSRTRNDGIL-QTFDDYGIPLVTD--G 606
+ ++ L V ++ DI +L+ + G+L GIP D G
Sbjct: 579 RRLLALKEAGHVVYDKHDKAYRPLAWRDIVILLRTVQGKAGVLLDVLRQAGIPAYADVDG 638
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G Y + EV VML L IDNP D L +LRSP+ DLA + L D
Sbjct: 639 G---YFEETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVGLTAGDLAAIRLCKDGD---- 691
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
L+ + A I E L K+ F E WR + + +LIW IY + Y
Sbjct: 692 -LWTALTAAAGAD------IAEPLRQKIGVFLERLDRWRSLARRRGVAELIWSIYRETGY 744
Query: 727 YDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVAL- 785
YDY+G +P RQANL L RA FE T F+GL RF+R ++++ + +D+A V AL
Sbjct: 745 YDYIGGMPGGALRQANLRVLYDRARQFEATNFRGLFRFLRFLERLRDRGSDMA-VARALG 803
Query: 786 -PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEEL 844
++ V +M+IHKSKGLEF V + ++ K+ +++D ++ ++ G+G K I
Sbjct: 804 EGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKVIR------ 857
Query: 845 EEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGD 904
P ++ S TL + +L L +E++R+LYVA+TR+ +KL LV GS +KL D
Sbjct: 858 -----PDLRDSYPTLARWGIEHKLTLEAKAEELRILYVALTRAREKLILV--GSVKKLAD 910
Query: 905 QYDGKS-----ENNHLP---VADREHYLTFQDWL-LAIEAAYAADELHFKTSFITDEDLT 955
+ + LP + D ++YL DWL AI L DE T
Sbjct: 911 RCSDWCAMVGWQAQALPDALITDAKNYL---DWLGPAIVRHPGGAPLRALAG--CDETPT 965
Query: 956 EDKMGSLEA-----EQAYDADNLKDNRQSDDITRALDMLE-----------AVEKLNQH- 998
K+ +L A A D+ N Q D A+ + E +L+
Sbjct: 966 A-KLAALNAAWQVITHAADSINPVAPAQPADNPLAVCLKELKPLPGGDSAWVAARLDWRY 1024
Query: 999 -YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALG 1057
Y AA+ P T S+IK+ + + + +G + +P+F K +G
Sbjct: 1025 PYAAAVGQPAKLTVSEIKRRF-ALADQDGEQWYPPRLAARPRF----IQTAGKLTAAEVG 1079
Query: 1058 SSVHELMQRLHLSEQVSLEDILTALAELSVEENV----KKAIQVDKILHFFQTSQLGKLI 1113
+++H +MQ L+L+ +S + L L E + A+ V+ I FF TS LG+ +
Sbjct: 1080 TAMHTVMQHLNLAGDMSASGVRRELERLVAAEILLPEQAAAVDVEAIAAFF-TSPLGQRL 1138
Query: 1114 QANADKVYREAPFAML----QADPA---SGEDYVVRGIIDGYILFDNRIVLFDYKTDKFT 1166
NA RE F + DPA + E ++G++D + ++L DYKTD+
Sbjct: 1139 -LNAAWRRRELAFCQVLPAASIDPALAGTDETVFIQGVVDCLFAEADGLILIDYKTDQVK 1197
Query: 1167 NSQAIKERYRGQMTLYAQAL 1186
+ + ERY Q+ LYA A+
Sbjct: 1198 DGFELVERYDVQLKLYAAAM 1217
>gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435]
gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 1225
Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats.
Identities = 367/1255 (29%), Positives = 618/1255 (49%), Gaps = 107/1255 (8%)
Query: 24 KKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVK 82
K + T Q ++IY +G ++LV+A+AGSGKT V++ERI+ KI+R + +D+L + TFT
Sbjct: 9 KDAQWTDAQWKSIYANGQDVLVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNL 68
Query: 83 AAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLG 142
+A E+K R++++I + + + + L Q + + A I T+ +F K++ Q+ +
Sbjct: 69 SAREMKHRVDQRIQQA---SIEDPRNEHLKNQRIKIHQAQISTLHSFCLKIIQQHYDVID 125
Query: 143 ISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
+ PNFR + D LL+ + + L Y T D F LV + +R D NFR ++
Sbjct: 126 LDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIE--FLTLVEQLSSDRNDD-NFRDLLK 182
Query: 203 KIYDFSQATDNPQRWL--LENFLKGANTYK----DFSAIPEQEVKDFLNTLQETALALRD 256
+ Y+FS A +P WL L N +K + + + +K +TL E +
Sbjct: 183 RFYNFSIANPSPFEWLDSLVEIYTDDNKHKLYLDELERLSKIYIKAAYHTLLEAENNFLN 242
Query: 257 VTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSL--YGRDGLGKLANDIATLIP 314
+ E + V K + ++ V++F+ + Y + L + +
Sbjct: 243 CIEAEKHLDVIK--------LEKFKCEKMIEGNVINFEEIINYTSEKLPTITKKLKDTNE 294
Query: 315 ----SGNDVTVAGVKYPVFRSLHSRLRG---LKHLETIFKYQDQSLPLLQVLQSFTLDFS 367
S +T A + ++ L S ++ ++ E + + P +Q L D
Sbjct: 295 DEGISSQFLTNAKDFFDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDII 354
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQE 423
+ + K N +FSD HFA+QIL + + I + Y ++ E++VDEYQD N QE
Sbjct: 355 NGFAEKKRSRNVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQE 414
Query: 424 RMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKEN 478
++ + G N FMVGD+KQSIY+FRQADP +F K+ F ++ + G I L +N
Sbjct: 415 AIISKIKRGDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKN 474
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538
FRS+ EVL TN +F H+MDE VGEI YD +L G++ E LI D
Sbjct: 475 FRSRKEVLATTNYLFDHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDK--S 532
Query: 539 QNQDLAVEDDSNQISLGEVKLVA--KEIIRLHNE--EKVQFEDITLLVSSRTRNDGILQT 594
+ DL + + +VK + K++ + +E + F+DI +L + Q
Sbjct: 533 SDNDLEKSEQEARYIAEQVKYIIEHKQVYDMKSETYRQATFKDIVILERGLKNARNLQQV 592
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
F DY IP + E Y + EV ++L LR++DNPL D LV L+RS ++ F ED+LA
Sbjct: 593 FKDYNIPFHVNSKE-GYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELAN 651
Query: 655 LALQNLPDQH-KQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
+ +Q++ D + Q++ M++ Q L KL+ F + ++E+S + +
Sbjct: 652 IRVQSMNDDYFYQSILHYMKD---------QEANPLLVEKLEHFMDDINMYQEYSQSHPV 702
Query: 714 YDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILE 773
Y LI K YND + Y L + R+ANLY L +A FE + F+GL +FIR ID+++E
Sbjct: 703 YQLIDKFYNDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIE 762
Query: 774 NQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
D + V P N V +MT+H SKGLEF YV + K F+ D+ PLIL+++ G+
Sbjct: 763 RNKDFGEENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILNQKYGL 822
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
GI Y D+++ + L +V + + ++EL +SE+MRL+YVA+TR++++L
Sbjct: 823 GIDYF-DLEQNVTYPSLSSVVIK------SITEKEL----ISEEMRLMYVALTRAKEQLI 871
Query: 893 LVGKGSQEKLGDQYDGKS-ENNHLPVADREHYLTFQDWLLAIEAAYAAD----ELHFKTS 947
L+G +E+ ++ + N + + R D + +I A Y + E F+ S
Sbjct: 872 LIGTIDKEEALEKLERLPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKS 931
Query: 948 FIT-DEDL---TEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAV-EKLNQH---- 998
DE L + K+ E D+++ +++R D+ + + +++N
Sbjct: 932 IDNLDESLRPTVDIKIAQFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFK 991
Query: 999 --YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKK-AKQDPTA 1055
Y P+ ++ S++K+ E E ++ +E P+F ++ K+
Sbjct: 992 YPYLKDTEKPSKQSVSELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANE 1051
Query: 1056 LGSSVHELMQRLHLSE----QVSLEDILTALAELS-VEENVKKAIQVDKILHFFQTSQLG 1110
+G+ +H +MQ L E + L D + L E +EE+ KK IQ + +++F ++
Sbjct: 1052 IGTLMHTVMQHLPFKETRMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYM 1111
Query: 1111 KLIQANADKVYREAPFAMLQAD----PASGEDY-VVRGIIDGYILFDNRIVLFDYKTDKF 1165
+ Q ADKVYRE PF + QA P S ED +++G+ID L D++ DYKTD F
Sbjct: 1112 TITQ--ADKVYRELPFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDAF 1169
Query: 1166 TNSQA---------IKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVVE 1211
+ ++++Y+ QM Y L N +V YL ++ + E
Sbjct: 1170 NKRRGMTDEEVGIQLRDKYKIQMKYYKNTLETILN-SKVYGYLYFFQFGQMSIEE 1223
>gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
HTE831]
gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
HTE831]
Length = 1243
Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats.
Identities = 377/1284 (29%), Positives = 620/1284 (48%), Gaps = 157/1284 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T EQ EAIYTSG++ILV+A+AGSGKT V++ERI+ K+L ID L + TFT AA
Sbjct: 5 TKEQEEAIYTSGSDILVAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTNAAAQ 64
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ R+ + EQ N +++ L +QL LQ A I T+ +F +V + Y L I P
Sbjct: 65 EMRNRVGAAL-EQALAANPSSIH--LKKQLSLLQRASISTLHSFCLDIVKKNAYILDIDP 121
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDY--RTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
+FRI D E DLLK +V DDL ++ + + F ++V F +R D+ ++I
Sbjct: 122 SFRI-ADDMEMDLLKQEVLDDLLEEWYGDSNPNQDSFFEVVNRFTSDRSDAE-MEELIRS 179
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSA-------IPEQEVKDFLNTLQETALALRD 256
++ F+ + P +WL + ++ N ++++ + EV L+ + +
Sbjct: 180 LHTFAMQSPWPNQWL-DKLVQTYNIPEEWTEEELPWMNVLRDEVSRQLDAVSQEIDIAYS 238
Query: 257 VTDLED--YKQVTAKGTPTAAYQRHLKMIEQ---LQDWVLH--FDSLYGRD--------- 300
+T D Y A Q LK +E LQ +L F L G+
Sbjct: 239 ITQEADGPYHYAKTIEEEKAIIQEALKNMESWKYLQQSMLQVKFGKLSGKKVDCDEEKKT 298
Query: 301 GLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQ 360
+ KL + +V A R+L + + ++ L + K+ L+++++
Sbjct: 299 KVKKLRDSYKKRFQKMQEVWFA-------RNLDAHVYDMRVLAPVIKH------LVELVK 345
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID---------KYHEVM 411
F F+K K ++ +FSD+ H+ +QIL + + + I ++ EV+
Sbjct: 346 QFQDSFAK----VKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVL 401
Query: 412 VDEYQDNNHTQERMLELLSNGR---NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE 468
VDEYQD N QE +L+L+S+ + N FMVGD+KQSIYRFR A+P +F K+K F +
Sbjct: 402 VDEYQDTNMVQETILQLISDRQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFSNSDD 461
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET 528
I L NFRS+ VL N +F L DE +GEI YDD +L+ G+ + +
Sbjct: 462 PSIRIDLARNFRSRENVLLGANYIFRQLFDEDLGEISYDDAAELIYGNKMYDDHPLEAKP 521
Query: 529 QVLIYDTK----DQQNQDLAVED-DSNQISLGEVKLVAKEIIR----------------- 566
++L+ D +Q + + VED + QI E + AK+I
Sbjct: 522 ELLLIDNNSEDVEQSDNEETVEDLEKAQI---EARAYAKQIKNWIGTPEDEIPMQVVDKA 578
Query: 567 LHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRS 626
+ +Q++DI +L+ S T I GIP D Y +++E+ VML L+
Sbjct: 579 TGKQRDLQYKDIVILMRSMTWASTIADELQQQGIPTYAD-LSTGYFEAIEIKVMLSFLKV 637
Query: 627 IDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLI 686
IDNP D L ++LRSP+ +ED LA + L + + + ++N ++ LI
Sbjct: 638 IDNPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSDTVKSLI 697
Query: 687 TEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYAL 746
F E +R+ + SL +LIW IY + YYD+VG++P +QRQANL AL
Sbjct: 698 R---------FMEMLNDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRAL 748
Query: 747 ALRADNFEKTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTIHKSKGLEFKY 805
RA +E T F+GL RF+R I+++ E DL A ++ ++ V +MTIHKSKGLEF
Sbjct: 749 YDRARGYESTSFRGLYRFLRFIERMEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPI 808
Query: 806 VFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNK 865
V + ++K+F+ +D++ +L + G KYI P ++ TL Y +
Sbjct: 809 VILGGMNKEFNQRDLSEKYLLHKDLGFASKYID-----------PVKRIQYPTLYYHAVR 857
Query: 866 RELRLATLSEQMRLLYVAMTRSEKKLYLVGK-GSQEKLGDQYDGKSENNH--LPVADREH 922
+ LSE++R+LYVA+TR+++KL +VG S EK +++ ++ LP R
Sbjct: 858 QAKFRDMLSEEIRVLYVALTRAKEKLLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRME 917
Query: 923 YLTFQDWLLAIEAAYAADELHFKTSFITD---EDLTEDKMG-SLEAEQAYDADNLKDNR- 977
T+ DW+ + E +T I + E + +D + A D ++KD+
Sbjct: 918 SKTYLDWVGPALLRHVGSE-KIRTENIGNQVLESINQDPSDWQITMNHALDYMDMKDSSM 976
Query: 978 -QSDDITRALDMLEAVEKLNQ--------------HYKAAIHLPTVRTPSQIKKFYEPVM 1022
D++ + E+VE + YK A ++ +++K+ E
Sbjct: 977 DNDDNLKEKVFNWESVETEQEGLKNDVDARLSYEYAYKQATVFRAKQSVTELKRQQEVKD 1036
Query: 1023 ETEGVEVMQTSYQTKPKFELPQF-SKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTA 1081
+ +++ S+ P + P F KK K P G+++H +MQ L ++ +S +I
Sbjct: 1037 DYSDQQILPPSH--GPIGKRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLSEPEIEEN 1094
Query: 1082 LAELSVEENVKK----AIQVDKILHFFQTSQLGKLIQANADKVYREAPFA-MLQADPA-- 1134
+ ++ +EE + + +I + + FF T K+I N ++RE PF+ ML A
Sbjct: 1095 IEKMVLEEKLTRMEADSINIRAVERFFHTEIASKIISGN--DMHREVPFSIMLPASEVYA 1152
Query: 1135 -----SGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYA 1183
S E +++G+ID + D ++ DYKTD ++ Q + RY+ QMTLY
Sbjct: 1153 NWKDQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQELIHRYQTQMTLYR 1212
Query: 1184 QALSQSYNIQQVDSYLILLGGEKL 1207
+A+ Q + +YL + L
Sbjct: 1213 RAIEQIWKQPVEQTYLYFFSQQLL 1236
>gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Thermoanaerobacter
tengcongensis MB4]
gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Thermoanaerobacter
tengcongensis MB4]
Length = 1204
Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats.
Identities = 352/1247 (28%), Positives = 631/1247 (50%), Gaps = 125/1247 (10%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ EAI T G N+LV+A+AGSGKT V++ERI++ + + V ID+L + TFT A
Sbjct: 4 KWTEEQREAITTRGKNVLVAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ +++ + L + + L++QL L A I T+ +F +V ++ + L +
Sbjct: 64 ASEMRERIAERL---ISLLDQHPEDKRLADQLTLLNKATITTIHSFCLDVVRKHFFLLDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
P+FR+ D +E LLK + ++LF + Y D+ F LV ++ G + D + ++
Sbjct: 121 DPSFRV-GDDTETLLLKLEAMEELFEELYEKNDEG--FLLLVESYGGTKGDQY-LQDVLL 176
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLED 262
K+Y F ++ P++WL N L+ +DFS + + L++++ L L + +
Sbjct: 177 KLYGFIRSLPWPEKWL-NNVLEAFEVKEDFSFEDSKWAEVILDSIKVEILGLLNGMSVAI 235
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATL----IPSGND 318
K +G + +L + Q H L + I + +P +
Sbjct: 236 EKLREERG-----LEGYLSL---FQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASK 287
Query: 319 VTVAGVKYPVFRSLHSRLRGLKHLETIF---------KYQDQSLPLLQVLQSFTLDFSKQ 369
A VK V + + ++ + F + + P+++ L L F K+
Sbjct: 288 EADAEVKEEVRKLREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKK 347
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + K ++ +F DI HFA++IL N+ + Y +K+ E+ +DEYQD++ QE +L L+
Sbjct: 348 YGEKKKEKGVIDFEDIEHFALKILS-NEEVVSYYREKFEEIFIDEYQDSSLIQEAILSLI 406
Query: 430 S--NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
+ N NRFMVGD+KQSIYRFRQA+P IF +K+ + + E+ K ILL +NFRS+ E++D
Sbjct: 407 ARDNPPNRFMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGENKK-ILLYKNFRSRKEIID 465
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPY-PQNETQVLIYDTKDQQNQ----- 541
A N +F +M + +GE+ Y + +L G++ + P+ +NE V ++ + ++ +
Sbjct: 466 AVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKENERTVEVHLIEREREEEFEED 525
Query: 542 -----DLAVEDDSNQISLGEVKLVAKEIIRLHNEE-----KVQFEDITLLVSSRTR-NDG 590
D+ VE + +K + +E +++++E V++ DI +L+ + +
Sbjct: 526 EEILDDMQVE---AHVVGERIKGLFREGFKVYDKEIGGYRPVEYRDICVLLRATEKWAYA 582
Query: 591 ILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDED 650
+ F GIP+ D Y + E+ ML L+ IDNP+ D L+A+LRSP+F+F E+
Sbjct: 583 FEEEFVKMGIPVFADT-NAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRSPIFSFTEE 641
Query: 651 DLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL 710
+L + L++ +YE ++ A L + L K+ F ++ W+E S+
Sbjct: 642 ELVDIRLEDA----DGTIYEALKKA--------SLREDELGEKVRNFLDSLKRWQEKSIY 689
Query: 711 NSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
+ + +W +Y + +Y YVG++P+ +RQANL L RA +E+T FKGL F+ I++
Sbjct: 690 MPVDEFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINR 749
Query: 771 ILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
+ D+ + V +N V +M+IHKSKGLEF V + + K+F+ +D+ ++
Sbjct: 750 LRTTSTDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHF 809
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
G+G +++ D + L S ++ + K +++L +LSE+MR+LYVA+TR+++
Sbjct: 810 LGIGPEFV-DYRRRL----------SYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKE 858
Query: 890 KLYLVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTS 947
KL LV K +E+ K + D ++ DW+ + + +L + +
Sbjct: 859 KLILVASVKDIKERAKKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFA 918
Query: 948 FITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAV--------------E 993
I+ E L +D S + ++ ++ R+ D+ L+ L A+ E
Sbjct: 919 EISPE-LEQDS--SKWEVKIWNKRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEE 975
Query: 994 KLN--QHYKAAIHLPTVRTPSQIKKFY-EPVMETEGVEVMQTSYQTKPKFELPQFSKKAK 1050
+LN Y + LP + ++IK+ + V++ E + + P F KK
Sbjct: 976 RLNYVYPYDRSSKLPAKLSVTEIKRILNDEVIDEETTSIFERRVLKTPLF----LEKKRG 1031
Query: 1051 QDPTALGSSVHELMQRLHLSEQVSLEDILTALAELS----VEENVKKAIQVDKILHFFQT 1106
P G ++H +MQ+L LS+ +S I + ++ + E K + +KI FF+T
Sbjct: 1032 LTPAERGIAMHLVMQKLDLSKDLSYRGIKEQIKDMVKNEILTEEQAKEVDANKIERFFKT 1091
Query: 1107 SQLGKLIQANADKVYREAPFAMLQAD--------PASGEDYV-VRGIIDGYILFDNRIVL 1157
+L++A +V RE PF + + E+++ V+GIID + + +VL
Sbjct: 1092 PLGKRLLKAK--EVRREVPFHIKISSREIYRDLPEVYQEEFIAVQGIIDCFFEEEGELVL 1149
Query: 1158 FDYKTDKFTNS--QAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
DYKTD N + I+++YR Q+ LY +AL + + + Y+ L
Sbjct: 1150 IDYKTDYVENGKIEEIRDKYRVQIDLYGKALEEITGKKVKEKYIYLF 1196
>gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
helicase and exonuclease domains) [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 1236
Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats.
Identities = 378/1288 (29%), Positives = 625/1288 (48%), Gaps = 184/1288 (14%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T EQ EAI +N+LV+A+AGSGKT V++ERI+ +LR + ID+L I TFT AAGE+
Sbjct: 5 TIEQEEAINARNSNLLVAAAAGSGKTTVLVERIIQLVLRDRIDIDRLLIVTFTQAAAGEM 64
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
+ER+ ++L + L QL L + I T+ AF +V Q+ + + I P+F
Sbjct: 65 RERINAAFFKELEKGREDG---HLRRQLYLLNRSSISTIHAFCSDVVRQHFHLVNIDPHF 121
Query: 148 RILQDKSEQDLLKNDVFDDLFT-DYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
RI D +E +L+K +V ++L +Y G+ F LV F G+ KD +I +++
Sbjct: 122 RI-ADSTETELIKMEVLEELLDGEYEKGNDG--FLDLVEAF-GSNKDDKPLEALILRLHS 177
Query: 207 FSQATDNPQRWL---LENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDLE 261
F Q+ P WL ++N G + + + +++ Q++K L+ Q D+ + +
Sbjct: 178 FIQSHPQPLSWLEEKIDNLALGEDNWAENPWASELSQQIKIELSAAQ-------DILN-Q 229
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWV--------------------LHFDSL--YGR 299
K G P +L+ IE Q WV L F L R
Sbjct: 230 ALKLSNKAGGPRG----YLEAIESDQKWVELLLKAADQGLPVLYSCLQQLSFTRLGRVSR 285
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVL 359
D L N + L + A + + R L+ L + ++ KY L +++
Sbjct: 286 DVDENLKNQVKILRDESKKILNA-INSLLGRDPLEYLQDLNEIYSLMKY------LGEII 338
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNN 419
QSF ++ Y + K ++ +F+D+ H A+QIL N+A+ + Y D Y + +DEYQD+N
Sbjct: 339 QSF----AEIYQEKKREKGIVDFNDLEHLALQILS-NEAVAREYRDYYSYLFIDEYQDSN 393
Query: 420 HTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLILLKEN 478
QE +L + N FMVGD+KQSIYRFR ADP +F +K K + + + + L +N
Sbjct: 394 LVQETILNYIKKEDNLFMVGDVKQSIYRFRLADPSLFLEKQKSYPLQDGSVNRRVDLNKN 453
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAG-SSAQKIPYPQNETQVLIYDTKD 537
FRS E+L+A N +F HLM E +GEI YD+ L G ++ Q++ Y Q + + K+
Sbjct: 454 FRSHPEILNAVNYIFRHLMSEELGEIDYDEKSYLYPGLNTGQELKY-QEIDKASSQEGKE 512
Query: 538 QQNQ--------------------------------------DLAVEDDSNQISLGEVKL 559
++N + +E D+ +I E L
Sbjct: 513 KENTAKRVEICILENNPDLITKLEENETEEREIPGEAENDFIERIIEMDNTEI---EALL 569
Query: 560 VAKEIIRLHNEE----------KVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGE 608
+A++I +L E+ K+++ D+ +L+ + + GI ++ GIP+ D
Sbjct: 570 IAQKIRQLIQEDIYDPELQCMRKIEYRDMVILLRATRNSAGIFMEQLSAEGIPVYADA-S 628
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ-- 666
Y ++E+ + ++ LR IDN D AL++++RSP+ F DD ++ + +P + KQ
Sbjct: 629 SGYFDTLELNLFINLLRLIDNKRQDIALLSVMRSPIGGFSIDDFIKIRTKLIPRREKQPY 688
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
+ YE ME + L +L F + W S + +L + + K++ D Y
Sbjct: 689 SFYEAMEFYMEDN-------NDDLKDRLVFFIQRLKEWELESRIMALDEFMGKLFMDTGY 741
Query: 727 YDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV-EVAL 785
Y Y G++P QRQANL L RA F+K+ FKGL FI+ I+KI + +D+ + +
Sbjct: 742 YYYAGAMPGGGQRQANLRILLHRAREFQKSSFKGLFSFIKYIEKIKSSGSDMGNACIIGE 801
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
N V +M+IHKSKGLEF V + + K F+I+D ++L R+ G+G +YI
Sbjct: 802 NDNVVRIMSIHKSKGLEFPVVILGGLGKNFNIRDSNENVLLHRKLGIGPRYINTQ----- 856
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQ 905
++ DT+ K ++L L+E+MR+LYVA TR ++KL +VG Q + +
Sbjct: 857 ------LRTYHDTIARLAIKNRIKLENLAEEMRILYVACTRPQEKLIMVGTTRQLESAWR 910
Query: 906 YDGKSENNHLPVADREHYLTFQDWLLAI------EAAYA--------------ADELHFK 945
+ N++ ++ +F DWL+ I E Y DE +K
Sbjct: 911 RWSQPVNSY----NQSRARSFLDWLIPIIMRHKKEGQYLREIAGGDWDREILWEDESRWK 966
Query: 946 TSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQH--YKAAI 1003
I+ LT +++ + E+ Y+ + L + Q + + E +++LN Y+ A
Sbjct: 967 VKLISPWQLTAEEI--RKKEEKYEWERLLE--QGGYSCPSAESEEIIKRLNWKYPYQEAE 1022
Query: 1004 HLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHEL 1063
++P + SQ+ + +E + T P F + KK + P GS VH +
Sbjct: 1023 NIPAKLSVSQVSQISSGYLEDGAADTFLTRV---PAFLSGEKDKKTRLSPADKGSIVHLV 1079
Query: 1064 MQRL---HLSEQVSLEDILTALAELSVEENVKKA-IQVDKILHFFQTSQLGKLIQANADK 1119
MQ + +S + S+ L + E + + + A ++V+KI FFQT +++QA
Sbjct: 1080 MQNIDYRRVSREDSINQQLGEMVEREILTSEQLAVVEVNKIWRFFQTKLGQRVLQAKW-- 1137
Query: 1120 VYREAPFAMLQAD----PA--SGEDYVVRGIIDGYILFDNRIVLFDYKTD--KFTNSQAI 1171
++REAPF +L A PA S E+ +++GIID Y IVL D+K+D + + I
Sbjct: 1138 LFREAPFNLLIAASEVFPALESQEELLIQGIIDLYFYEGEDIVLLDFKSDIVHHKSEEEI 1197
Query: 1172 KERYRGQMTLYAQALSQSYNIQQVDSYL 1199
YR Q+ LY +AL + + +SYL
Sbjct: 1198 LAPYRVQLKLYKRALENITDHRVKESYL 1225
>gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
gi|134051975|gb|ABO49946.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
Length = 1244
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 378/1266 (29%), Positives = 612/1266 (48%), Gaps = 148/1266 (11%)
Query: 22 SDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFIST 78
SDKK T EQ+ AI T TN+LV+A+AG+GKT V++ERI+ I R V +DQL I T
Sbjct: 2 SDKKW--TAEQLAAITTRDTNLLVAAAAGAGKTAVLVERIIGLITDPHRPVDVDQLLIVT 59
Query: 79 FTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYG 138
FT AA E++ER+ + +++ L+ + + L+ QL L A I T+ +F L+ +Y
Sbjct: 60 FTNAAAAEMRERIGQALSKALQ---ENPHSKRLARQLTMLNRASITTLHSFCLDLLRRYF 116
Query: 139 YTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFR 198
Y L + P FR+ D+ E +LL+ DV ++LF D E+F +LV ++ G R D S +
Sbjct: 117 YQLDLDPGFRV-ADEVEAELLRLDVLEELFERRYNQDNVEVFARLVDSYGGQR-DDSRLQ 174
Query: 199 QIIYKIYDFSQATDNPQRWLL---ENF-LKGANTYKDFSAIPE------QEVKDFLNTLQ 248
++ ++Y FS + P +WL EN+ + T D + I + QEV+ L L+
Sbjct: 175 DLVLELYRFSGSHPLPVQWLTSLAENYVIPEGKTLDDQTWIVQIKKTIFQEVEGVLGLLK 234
Query: 249 ETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAND 308
+ + E Y + + ++K + DW ++ LY A
Sbjct: 235 QAQWLAKQPGGPEPYSKTLTEDII------NIKPLTN-NDWDASWEKLY----RSITAIK 283
Query: 309 IATLIPSGNDV------TVAGVKYPVFRSLHSRLRGLKHLETIFKYQD-QSL-PLLQVLQ 360
+ L P ++ ++ + + E +D +SL PL+ L
Sbjct: 284 WSKLSPCRGEIDDQLKNKAQNLRNKAKEKFNDIINTYFSAEPTVILEDLRSLQPLIADLA 343
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQIL--EENDAIR----QLYID---KYHEVM 411
T++F + Y + K + +F D+ H+ + IL +ENDA + I+ +Y EV+
Sbjct: 344 KLTIEFMELYQKKKQAKGLVDFGDLEHYCLTILLDKENDAAEFRPSAVAIELQQQYAEVL 403
Query: 412 VDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE-HG 470
VDEYQD N QE +L L+S NRFMVGD+KQSIYRFR A+P++F K + + G
Sbjct: 404 VDEYQDINAVQETILRLVSKKNNRFMVGDVKQSIYRFRLAEPKLFLSKSELYANTDNCQG 463
Query: 471 KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS---SAQKIPYPQNE 527
I L +NFRS+ EV++A N +F +M + GEI YD+ +L G+ A+ +
Sbjct: 464 TRIGLSKNFRSRLEVVNAVNFIFRQIMTKKAGEITYDELEELHCGADYPQAEDVKTATGP 523
Query: 528 TQVLIYDTKD----QQNQDLAVE---DDSNQISL----GEVKLVAKEI------------ 564
+V + D KD +QN D A E D Q L E +L+ + I
Sbjct: 524 VEVYLIDRKDAQLEEQNTDSAEEKLTDGEEQEDLDSDQAEARLIGRRIQAMVKGTDKAMG 583
Query: 565 --IRLHNEE-----KVQFEDITLLVSSRT-RNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
++ ++E V + DI +L+ + T R + L+ G+P + G Y ++VE
Sbjct: 584 PEFKVWDKEIGKYRPVSYRDIVILLRATTGRANTFLEELRTMGVPTYAEVG-TGYFEAVE 642
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V L L+ IDNP D L +LRSP+ DLA + L + + + Y+ + A
Sbjct: 643 VETFLSLLKIIDNPRQDVPLAGVLRSPVVGLKASDLAEIRLCS----KEGDFYDAVRIAA 698
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKS 736
V + L F +WR + ++L DLIW +Y + YYDYVG +
Sbjct: 699 AADLGDV-------AVTLTKFLRQLENWRSRARRDTLADLIWLLYRETGYYDYVGGMVGG 751
Query: 737 EQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL-ADVEVALPKNAVTLMTI 795
QRQANL L RA FE T F+GL RF+R ++++ ++ +DL A ++ ++ V +M+I
Sbjct: 752 TQRQANLRVLYHRAKQFEATSFRGLFRFLRFVERLKDSGSDLGAARSLSENEDVVRIMSI 811
Query: 796 HKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVS 855
HKSKGLEF +F+ + K+F++ D+ +++ ++ G+G + I +VS
Sbjct: 812 HKSKGLEFPVLFVAGLGKRFNMMDLNKDMLMHKELGLGPQIIH-----------LGSRVS 860
Query: 856 MDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQYDGKSENN- 913
+LP L K+++R +++E+MR+LYVA+TR+ +KL LVG EK +++ +
Sbjct: 861 YPSLPKLLIKQQIRKESVAEEMRVLYVALTRAREKLILVGAVRDLEKSLEKWCTSTYQAG 920
Query: 914 -HLPVADREHYLTFQDWLL-AIEAAYAADELH--FKTSFITDEDLTEDKMG---SLEAEQ 966
LP A+ + DWL AI + EL KT ++ D +A +
Sbjct: 921 WTLPDAELMAAKCYLDWLCPAIARHHNGHELRSLAKTEGQPFSEVATDPSAWQLVFQALK 980
Query: 967 AYDADNLKDNRQSDDITRALDMLEAVE----------KLNQHYKAA--IHLPTVRTPSQI 1014
++ QS + + +E E +L+ Y A P +++
Sbjct: 981 DIKNQTQENKEQSQGLLVKIKDMEPFEDAGLIKEVERRLSWQYPRAEVTTRPAKAAVTEV 1040
Query: 1015 K-KFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQV 1073
K KF E + GV + +P+F + P GS++H +MQ + L +
Sbjct: 1041 KHKFDELARQEAGVMSYRPKISGRPRF----LQQDKGLTPAERGSAIHLVMQHIPLDKLP 1096
Query: 1074 SLEDILTALAELSVEE----NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM- 1128
E + L L +E AI + I FF +S +++QA KV RE PF++
Sbjct: 1097 DEEGVQVLLQNLIQKEILLPQQAAAINPNHITGFFASSIGQRVLQA--PKVERELPFSLA 1154
Query: 1129 ------LQADPASGEDYV-VRGIIDGYILFDNRIVLFDYKTDK-FTNSQAIKERYRGQMT 1180
Q P G++ V V+G+ID + + +L DYK+D + + +RYRGQ+
Sbjct: 1155 LPATEVYQELPECGDEMVLVQGVIDCLVDEGDGFLLIDYKSDAVYPGQDSPVDRYRGQIN 1214
Query: 1181 LYAQAL 1186
LYA+A+
Sbjct: 1215 LYARAV 1220
>gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101]
gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101]
Length = 1270
Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats.
Identities = 373/1303 (28%), Positives = 630/1303 (48%), Gaps = 180/1303 (13%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T EQ AI T N+LV+A+AGSGKT V++ERI+ I G V ID+L + TFT A
Sbjct: 4 KWTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L + + L QL L A I TM +F +++ + + +
Sbjct: 64 ASEMRERIGDAISKALEKDPSS---EVLQRQLALLNRASITTMHSFCLEVIKNNFHLIDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FRI D++E +L+K D+ DLF D D E F LV + G++ D N II K
Sbjct: 121 DPGFRI-GDQTECELIKQDILADLFEDMYAKDD-ECFKDLVEAYGGSKSDD-NLNSIILK 177
Query: 204 IYDFSQATDNPQRWL---LENFLKGANTYKDFSAIPEQEVKDFLNTLQETAL-----ALR 255
Y+F + P+ WL +E F + ++I E E K ++ L+E+ + A
Sbjct: 178 FYNFIMSGPWPESWLKDKVEEF--------NINSIEELEGKKWIEVLKESIILDLNNAYS 229
Query: 256 DVTDLEDYKQVTAKGTP--TAAYQRHLKMIE---QLQDWVLHFDSLYGRDGLGKL----- 305
+T D ++ P Y +++ E L + ++ F + G+L
Sbjct: 230 MLTQARDIAEMGGGLEPYLVNIYPEIIQVEELRIALSEGIVKFYNKLMGASFGRLKSVRK 289
Query: 306 -------ANDIATLIPSGNDVTVAGVKYPVFR-SLHSRLRGLKHLETIFKYQDQSLPLLQ 357
A + + + + ++ VF SL + G+K + PL++
Sbjct: 290 ASVDDEKALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKM----------YPLMK 339
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHE 409
L ++FS +Y K +++ +F+D+ H ++IL + D + + DK+ E
Sbjct: 340 CLSGLIIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFEE 399
Query: 410 VMVDEYQDNNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
V+VDEYQD+N QE ++ ++S N FMVGD+KQSIY+FRQA+P++F +K+ +++E
Sbjct: 400 VLVDEYQDSNTIQETIVGMVSRRDVENPNVFMVGDVKQSIYKFRQANPELFLEKYINYRE 459
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+ + I+L +NFRS+ E+++ N +F LM VGE+ YD+ L G+S ++
Sbjct: 460 FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALNLGASYGEL---- 515
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLG----------------------EVKLVAKE 563
NE V + +N +A + + N ++ E +++ K+
Sbjct: 516 NEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDELGEEEEDLDSIQLEARIIGKK 575
Query: 564 IIRLHNEE----------------KVQFEDITLLV-SSRTRNDGILQTFDDYGIPLVTDG 606
I L N E K++++DI +L+ +++ D + YGIP+ D
Sbjct: 576 INELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWADTFVDELGTYGIPVYADT 635
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G Y +++E+ +L L IDNP+ D +++ LRSP+F+F ++ A L L N +
Sbjct: 636 G-TGYFQTIEIRTILALLHIIDNPMQDIYILSSLRSPIFSFTSEEFADLRLLN----KDK 690
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
+E ++ +G + I++ L K F + WRE + + + IW +Y+D Y
Sbjct: 691 YFFEIIKEVVDGIYDES--ISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLYSDTSY 748
Query: 727 YDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-AL 785
Y YVG++P QRQANL L RA +E T FKGL FI I+K+ ++ D+ ++
Sbjct: 749 YGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSAKILGE 808
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
+N V +M+IHKSKGLEF V + K+F+ D+ ++L G+G I D+K+
Sbjct: 809 NENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCI-DVKK--- 864
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGD 904
++ DTL K++ L LSE+MR+LYVA TR+++KL + G S EK +
Sbjct: 865 -------RIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCE 917
Query: 905 QY---DGKSENNHLPVADREHYLTFQDWL-LAIEAAYAADELHFKTSFITDEDLTE---- 956
+ SE+N + + ++ DW+ +A+ D + + +L +
Sbjct: 918 NWCKASASSEDNRINPGNVLKGKSYLDWIGMALTKHKDGDAIRNVGNGDITLNLDDKSNW 977
Query: 957 -----DKMGSLEAEQAYDADNLKDNRQSDD-ITRALDMLEAVEKLNQHYKAAIHLPTVRT 1010
D+ LE N D +S++ I D+ E +E N+ ++ + T
Sbjct: 978 SFKSFDRSELLETNNNKKEKNNIDIFESNNWIESKKDIKEVIEIRNRLGFKYKYIESCNT 1037
Query: 1011 PSQIKKFYEPVMETEGVEVMQTSY----------QTKPKFEL-PQFSKKAKQDPTAL--G 1057
PS I E + E MQ SY K K + P+F ++ +++ +A G
Sbjct: 1038 PSNI-SVTELKRAHQEEEFMQESYNIIDNESSEENKKEKIKRKPRFMEERQEEFSAAKKG 1096
Query: 1058 SSVHELMQRLHLSEQVSL----EDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLI 1113
+ H +MQ + L + + E++L + + + E K + V KI FF+ S+LG+ +
Sbjct: 1097 TITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKIQKFFK-SELGQRM 1155
Query: 1114 QA---NADKVYREAPFAMLQADPAS-----------GEDYV-VRGIIDGYILFDNRIVLF 1158
+ + KVYRE PF + P+S GE+ V ++GIID + ++ VL
Sbjct: 1156 LSSYKSGKKVYRELPF--ITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAFFEEEDGYVLL 1213
Query: 1159 DYKTD--KFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
DYKTD K +A +Y+ Q+ LY L++ + ++YL
Sbjct: 1214 DYKTDYVKEGEEEAFINKYKIQINLYKDTLNKILGEEVKEAYL 1256
>gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
authentic frameshift [Lactobacillus sakei subsp. sakei
23K]
gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
authentic frameshift [Lactobacillus sakei subsp. sakei
23K]
Length = 890
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 286/876 (32%), Positives = 454/876 (51%), Gaps = 76/876 (8%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
TP Q A+ G +ILVSASAGSGKT V++ R++ KIL+G +D L + TFT AA E++
Sbjct: 10 TPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGTDVDTLLVVTFTEAAATEMR 69
Query: 89 ERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFR 148
+R++ + + + A+KQ L +QL + TA I T+ AF K++ Q+ Y + P FR
Sbjct: 70 QRIQAALRDASEKATEPAVKQRLRQQLSLVPTAQISTLHAFCLKVIKQFYYVIDRDPVFR 129
Query: 149 ILQDKSEQDLLKNDVFDDLFTDY------RTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
+L D +E+ LL + V+ + + + +Q LF +L +NF+ +R D I++
Sbjct: 130 LLSDTAERLLLADQVWQRVREAFYNHEYVKENEQDTLFYELAQNFSNDRNDDG-LTDIVF 188
Query: 203 KIYDFSQATDNPQRWLL---------ENFLKGANTYKD-FSAIPEQEVKDFLNTLQETAL 252
++ DF+ A NP +WL E L ++ +++ I +Q + + L LQE
Sbjct: 189 ELLDFANANSNPVKWLNKLPKSYAVDEAGLTASDYFQEKILPILQQTITECLEALQEAEQ 248
Query: 253 ALRDVTDLEDYK-QVTAKGTPTAAYQRHLKMI------EQLQDWVL---------HFDSL 296
+ +L Y Q+ K + +QL D L D
Sbjct: 249 LSKTSENLMIYAPQIATTQAALTQINADAKTLNWQAWRQQLTDAQLGPAKRTKKLEPDEQ 308
Query: 297 YGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLL 356
+D L +D+ I + D Y VF T Q Q+ L+
Sbjct: 309 INKDRLKADLDDVKKKIQTLLDT------YFVFDE-----------ATTANIQRQAGQLV 351
Query: 357 QVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILE-ENDAIRQLYIDKYHEVMVDEY 415
Q L S TL F + + K + + +FSD+ + IL E+ R Y K+ EV+VDEY
Sbjct: 352 QKLVSVTLTFREAFQAEKERRHLLDFSDLEQLCLTILSVEDSPARAFYQQKFSEVLVDEY 411
Query: 416 QDNNHTQERMLELLSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGK 471
QD N QE +++ +++ RN FMVGD+KQSIY FR ADP +F K+ +F E +
Sbjct: 412 QDTNPLQETIIQKVTSDHPRNLFMVGDVKQSIYAFRLADPSLFKNKYNEFGVTEAERDSE 471
Query: 472 LILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVL 531
I+L ENFRS+ + D TN +F LMDE +GE+ YD+ L G+ +P T++L
Sbjct: 472 RIILAENFRSRRNIDDFTNLIFKQLMDENLGELDYDENAALQYGARYYPDQHPTAPTELL 531
Query: 532 IYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEI------------IRLHNEEKVQFEDIT 579
+Y+TK ++ AV + S G+V VAK I +L +++ DI
Sbjct: 532 LYETKPEE----AVANPQLDKSEGQVVAVAKRIQAMMTNGEQIWDKKLEKMRPIEYRDIV 587
Query: 580 LLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVAL 639
LL +R N IL F +G+P+V QNY ++ EV +ML L+ IDNP D LV++
Sbjct: 588 LLAPTRGNNLFILDYFKRFGLPVVIKDA-QNYFQTTEVQIMLALLQVIDNPNQDIPLVSV 646
Query: 640 LRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFE 699
LRSP+ +E++LA + + + D + Q ++ ++ Q+V + + + KL F
Sbjct: 647 LRSPIVGLNENELALIRINDKTDDYYQAVFNFIDQYNE---QKVGHLGQQVMQKLTHFMA 703
Query: 700 TFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFK 759
S+R + + DLIW IY + + DYVG +P QRQANL+AL RA +E+ GFK
Sbjct: 704 LLTSFRTIARQQPIVDLIWTIYQETGFLDYVGGMPAGRQRQANLHALYERATAYEENGFK 763
Query: 760 GLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQD 819
GL +FI+ I+++ + DLA ++A+++MTIH SKGLEF VF+++ ++F+ QD
Sbjct: 764 GLFQFIQFIERLQKQDKDLAQPTSLENQDAISVMTIHGSKGLEFPVVFLIDTSRRFNQQD 823
Query: 820 MTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVS 855
+ +L G+G+ Y+ D ++ L+ LP + ++
Sbjct: 824 LQRSYVLDNHGGLGVVYL-DSQKRLKVPTLPELAIT 858
>gi|15895530|ref|NP_348879.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
(helicase and exonuclease domains) [Clostridium
acetobutylicum ATCC 824]
gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
(helicase and exonuclease domains) [Clostridium
acetobutylicum ATCC 824]
Length = 1252
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 364/1293 (28%), Positives = 616/1293 (47%), Gaps = 169/1293 (13%)
Query: 25 KQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTV 81
K T EQ EAI T N+LV+A+AGSGKT V++ERI+ I V ID+L + TFT
Sbjct: 5 KTNWTEEQKEAIDTRNCNLLVAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTN 64
Query: 82 KAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
AA E++ER+ I +L ++ + Q +QL + + I T+ +F ++ + L
Sbjct: 65 AAASEMRERIGDAIVNKLCENPNSRVIQ---KQLALIGKSKITTIHSFCLDVIKNNFHML 121
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAEL-------------FTKLVRNFA 188
+ P+FR+ D++E LLKN+ ++LF D QAE F KLV ++
Sbjct: 122 DLDPDFRV-GDETEIILLKNETLEELFEDKYL--QAEYTSKGINKNNNSIEFLKLVESYC 178
Query: 189 GNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQ 248
GN+ D F ++ +Y+FS + P +WL + + N DF + + +Q
Sbjct: 179 GNKNDQVLFNMVM-NLYNFSMSNPEPYKWL-KKAAERFNVDDDFEFGDSLWAEVLMKNIQ 236
Query: 249 ETALALRDVTDLEDYKQVTAKGTPTAAYQRHLK----MIEQLQDWVLHFDSLYGRDGLGK 304
L ++ L + + +Y+ +L+ M+E+L +++ LY + L
Sbjct: 237 IQLLGMKG--QLIESINIINSCASIESYRENLEVELSMLEKLIVASNNYEKLY--EELKN 292
Query: 305 LANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGL--KHLETIFKYQDQSL--------P 354
+ P D K + R L ++ K E I + + P
Sbjct: 293 VQFKTLKRCPKDADKE----KQKLVRDLRDGVKKSLSKISEDILSQNSEEIKEEFKVLYP 348
Query: 355 LLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYI--------DK 406
L++ L ++F +Y K + +F+D H + IL ++D + +K
Sbjct: 349 LMKTLSELVIEFDIRYKDKKKKRGIIDFNDFEHMCLSILTKSDESGNIVPSETALKIREK 408
Query: 407 YHEVMVDEYQDNNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
Y E+++DEYQD+N QE +L +S N FMVGD+KQSIYRFRQA+P IF +K+
Sbjct: 409 YEEILIDEYQDSNMVQEVILSTISRKDTENPNLFMVGDVKQSIYRFRQANPGIFLEKYNS 468
Query: 463 FQEHP-EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
++E+ E + +LL +NFRS+ EVLD+ N VF +M +GE+ YDD +L G++ ++I
Sbjct: 469 YKENKDEKNRKVLLYKNFRSRKEVLDSVNFVFKQIMSVNIGELDYDDNEKLNLGANYEEI 528
Query: 522 P---YPQNETQVLIYDTKD-----QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKV 573
+ +I ++D + N+D E+ + I L E +L+ + II L KV
Sbjct: 529 EENLISHSAELNIIEKSEDNTEIKENNED---EESVDNIML-EARLIGRRIIELKENFKV 584
Query: 574 -----------QFEDITLLVSSRTRNDGILQTFDD----YGIPLVTDGGEQNYLKSVEVM 618
+F+DI +L+ S G F D GIP+ D Y + EV
Sbjct: 585 LDKNTNVYRKAEFKDIVILLRS---TKGWANVFSDELKNMGIPVFADA-NSGYFDAPEVK 640
Query: 619 VMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNG 678
ML L+ IDNP D + A+L+SP+ F +DL + + Y+K++ A +
Sbjct: 641 TMLSLLQVIDNPRQDIPMAAVLKSPVGGFSVEDLIDIKVI-----EGDTFYDKLKVAAD- 694
Query: 679 QGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQ 738
+ + S ++ F WR+ SL + + IW +Y D YY YVG++ Q
Sbjct: 695 ------IGDDEFSVRIRTFLNRLYRWRKESLYTPIDEFIWYLYTDTGYYGYVGAVSGGIQ 748
Query: 739 RQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHK 797
RQANL L RA + +T +KGL FI I+K+ D+ ++ +N V +M+IHK
Sbjct: 749 RQANLKMLFQRAKIYSETSYKGLFNFINFINKLKLTSGDMGSAKILGENENVVRIMSIHK 808
Query: 798 SKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMD 857
SKGLEF VF+ + K F++ DM +P++ G G +Y+ D K+ ++S
Sbjct: 809 SKGLEFPIVFVGGLGKNFNLMDMNNPVLFHNYLGFGPEYV-DYKK----------RISHK 857
Query: 858 TLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG----------------KGSQEK 901
TL + K +R+ TLSE+MR+LYVA TR+++KL +VG + +Q K
Sbjct: 858 TLAKEAIKNRIRIETLSEEMRILYVAFTRAKEKLIMVGSVSDIKRSVFKWAVNLRSNQNK 917
Query: 902 LGDQYDGKSENNHLPVA-------DREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDL 954
+ + Y KS++ +A D E+ D D ++ + ++ D+
Sbjct: 918 ISEDYVLKSKSFLDWIASAVIRHKDAENLRDIMDTSKENIDNLVCDPSSWRVNVLSRNDV 977
Query: 955 TEDKMGSLEAEQAYDA------DNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTV 1008
LE E+ + LK+ R S+ + ++ +++ + Y+ A LP++
Sbjct: 978 LSFNQLLLEEEKNINEKLTQFYKRLKEIRSSNYESVYIEEIKSRLEFKYRYEKAAELPSL 1037
Query: 1009 RTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLH 1068
+ +++K+ + ++ S KP F + K P+ G++VH +MQ L
Sbjct: 1038 LSVTELKRNINEDNDEYATKIFTPSLVKKPLF----LEEVKKMSPSERGTAVHSVMQHLD 1093
Query: 1069 LSE---QVSLEDILTALAELS----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVY 1121
S +S+++I + ++ + E +++ +++IL FFQ+ ++I+ A+KVY
Sbjct: 1094 FSSISCDMSIKNIRHQIDDMVFRRILTEKQAESVNINRILKFFQSPIGSRVIK--AEKVY 1151
Query: 1122 REAPFAMLQADPA---------SGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIK 1172
RE PF + E+ +V+GI+D + ++ IVL DYK D + N + +
Sbjct: 1152 REFPFQIRVKSTEIYNDLPKIYDDENIIVQGIVDLFFKENDEIVLLDYKND-YINDENLN 1210
Query: 1173 E---RYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
E +Y Q+ Y +AL ++ + YL L
Sbjct: 1211 ETVKKYTYQINYYKRALEIVTGLKVKEKYLYLF 1243
>gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
gasseri ATCC 33323]
gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
gasseri ATCC 33323]
Length = 1204
Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats.
Identities = 363/1254 (28%), Positives = 633/1254 (50%), Gaps = 125/1254 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
T EQ +AI +G +ILVSASAGSGKT V++ER++ KIL G + L I TFT AA E+K
Sbjct: 5 TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64
Query: 89 ERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFR 148
ER+++KI++QL + D QFL QLL + TA+I T+D+F ++ ++ Y + + P F
Sbjct: 65 ERIKQKISDQLEIEPDN---QFLRSQLLDVDTANISTIDSFCLDVIRRFYYVIDLDPQFS 121
Query: 149 ILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFS 208
+L D+++ +LLK ++ DY GD + F NF+G+R D+ R ++ ++Y+
Sbjct: 122 VLTDETQAELLKERALREIEADYLEGDNQD-FQDFYDNFSGDR-DAEGARNLLLQLYN-- 177
Query: 209 QATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTA 268
AT P E FL T + + + ++ L Q L L++++DL+ +
Sbjct: 178 TATTEPN---YEKFLDNLPTCYE---VGDNLIRSNLWQQQIKPLLLKEISDLKAEVEALL 231
Query: 269 KGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDI-ATLIP------------- 314
P +K+ E + DS + + N+I A L+
Sbjct: 232 -AEPEINSSDLVKVKENYDIFSNRLDSFWESLNTDQPYNEIRANLMNCKFEKAVRKSKKW 290
Query: 315 SGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQ------SLPLLQVLQSFTLDFSK 368
S + V + L+ +L+ + + + ++Q S +++ + + +
Sbjct: 291 SDESIEVYQDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQ 350
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQER 424
++ Q K ++N ++SD+ FA IL + + ++ Y +K++E+++DEYQD N QE
Sbjct: 351 KFSQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQEN 410
Query: 425 MLELLSN-GRNR-FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQ 482
+++ + G+N FMVGD+KQSIY FRQA P +F K+ + + + K+IL +NFRS
Sbjct: 411 IIKAIKKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKDNDSEKIIL-ADNFRST 469
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQD 542
V N +F ++ G I Y QL G+S YP + Y D++
Sbjct: 470 KRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY----YPSDLPTASEYIFTDKKQTQ 525
Query: 543 LAVEDD-SNQISLGEVKLVAKEIIRLHNE------------EKVQFEDITLLVSSRTRND 589
A ED +++ EV++V I +L E +++ DI ++ +R+ N
Sbjct: 526 SAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIAIITRTRSDNL 585
Query: 590 GILQTFDDYGIPL-VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
++Q F +PL VTD QNY ++ E++++++ LR IDNP D LVA++RSP+F F
Sbjct: 586 QVMQEFAKADLPLFVTDA--QNYFQTFELIMIMNYLRLIDNPQQDIPLVAVMRSPLFNFK 643
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
E +LA++ ++ N Y + + + + +L K F + + R F+
Sbjct: 644 EPELAQIRVKT----PAGNFYTALTSFAS--------VNSSLGKKCKEFLQQLETLRSFA 691
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+ + +LIW IY + V LP +QR+ NL +L RA ++E GFKGL +FI I
Sbjct: 692 ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751
Query: 769 DKILENQNDLADVEVA-LPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
+++ +NQ DLA ++ NAV LMTIH SKGLEF VF++ + ++ +D++ +S
Sbjct: 752 ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSGNFTIS 811
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
QN +G+ ++EK +D+L L + R L E+ R+LYV +TR+
Sbjct: 812 -QNELGLT--------IKEK-----NYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRA 857
Query: 888 EKKLYLVG-----KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWL-LAIEAAYAADE 941
++KL LV + ++K + D K + +P+ + + + D+L +E + D+
Sbjct: 858 QQKLILVASVNEIENKRKKWVSELDQKKDI--IPLVKKINAQSPLDFLGPKLEQKHEFDQ 915
Query: 942 LHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKD-NRQSDDITRALD-MLEAVEKLNQHY 999
+ +E +DK+ L+ + + +KD N S ++ ++ +++ + +
Sbjct: 916 TIRDMTSALEE---QDKLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPF 972
Query: 1000 KAAIHLPTVRTPSQIKK-FYEPV-METEGVEVMQTSYQ-TKPKFELPQFSKKAKQDPTAL 1056
+ A ++ S+IKK F +P+ E E ++ +S + +P E P F + K +
Sbjct: 973 EDATKTTAYQSVSEIKKAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEI 1032
Query: 1057 GSSVHELMQRLHLS---EQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLI 1113
G+++H ++Q + +Q +L+ + L EL ++ + L++F S K
Sbjct: 1033 GTAMHLVLQYYNYEGNKDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAKEF 1092
Query: 1114 QANADKVYREAPFAMLQ---------ADPASGEDYVVRGIIDGYILFDNRIVLFDYKT-- 1162
DK++RE+ F+ L +DP++ +V G +DGY + ++LFDYKT
Sbjct: 1093 WKQPDKLHRESQFSSLVNASELFNDFSDPSA--KVLVHGTVDGYFEAKDGLILFDYKTDF 1150
Query: 1163 -DKFTNSQA---IKERYRGQMTLYAQALSQSYNIQQV-DSYLILLGGEKLEVVE 1211
DK QA IK++Y GQ+ LY QAL++ N ++V YLILL K+ V+
Sbjct: 1151 VDKTNEEQAIEKIKQKYTGQLRLYEQALNEMNNDKKVIGKYLILLDARKVVPVD 1204
>gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str.
13]
gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str.
13]
Length = 1268
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 369/1313 (28%), Positives = 633/1313 (48%), Gaps = 199/1313 (15%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T EQ AI T N+LV+A+AGSGKT V++ERI+ I G V ID+L + TFT A
Sbjct: 4 KWTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L + + L QL L A I TM +F +++ + + +
Sbjct: 64 ASEMRERIGDAISKALEKDPSS---KVLQRQLALLNRASITTMHSFCLEVIKNNFHLIDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FRI D++E +L+K D+ DLF D D E F LV + G++ D N II K
Sbjct: 121 DPGFRI-GDQTECELIKQDILADLFEDMYAKDD-ECFKDLVEAYGGSKSDD-NLNSIILK 177
Query: 204 IYDFSQATDNPQRWL---LENFLKGANTYKDFSAIPEQEVKDFLNTLQETAL-----ALR 255
Y+F + P+ WL +E F + ++I E E K ++ L+E+ + A
Sbjct: 178 FYNFIMSGPWPEAWLKDKVEEF--------NINSIEELEGKKWIEVLKESIILDLNNAYS 229
Query: 256 DVTDLEDYKQVTAKGTP-TAAYQRHLKMIEQL-----QDWVLHFDSLYGRDGLGKL---- 305
+T D ++ P + +E+L + V +++L G G+L
Sbjct: 230 MLTQARDIAEMGGGLEPYLVNINPEIIQVEELKIALSEGIVKFYNNLMGAS-FGRLKSVR 288
Query: 306 --------ANDIATLIPSGNDVTVAGVKYPVFR-SLHSRLRGLKHLETIFKYQDQSLPLL 356
A + + + + ++ VF SL + G+K + PL+
Sbjct: 289 KASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKM----------YPLM 338
Query: 357 QVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYH 408
+ L ++FS +Y K +++ +F+D+ H ++IL + D + + D++
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398
Query: 409 EVMVDEYQDNNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ 464
EV+VDEYQD+N QE ++ ++S N FMVGD+KQSIY+FRQA+P++F +K+ +++
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSRRDIENPNVFMVGDVKQSIYKFRQANPELFLEKYINYR 458
Query: 465 EHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYP 524
E + + I+L +NFRS+ E+++ N +F LM VGE+ YD+ L G+S ++
Sbjct: 459 EFEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALNLGASYGEL--- 515
Query: 525 QNETQVLIYDTKDQQNQDLAVEDDSNQISLG-----------------------EVKLVA 561
NE V + +N +A + + N ++ E +++
Sbjct: 516 -NEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDEDELGEEEEDLDSIQLEARIIG 574
Query: 562 KEIIRLHNEE----------------KVQFEDITLLV-SSRTRNDGILQTFDDYGIPLVT 604
K+I L N E K++++DI +L+ +++ + + YGIP+
Sbjct: 575 KKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWAETFVDELGTYGIPVYA 634
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
D G Y +++E+ +L L IDNP+ D +++ LRSP+F+F ++ A L L N
Sbjct: 635 DTG-TGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADLRLLN----K 689
Query: 665 KQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDK 724
+ +E ++ +G + I++ L K F + WRE + + + IW +Y+D
Sbjct: 690 DKYFFEIIKEVVDGIYDES--ISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLYSDT 747
Query: 725 FYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV- 783
YY YVG++P QRQANL L RA +E T FKGL FI I+K+ ++ D+ ++
Sbjct: 748 SYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSAKIL 807
Query: 784 ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEE 843
+N V +M+IHKSKGLEF V + K+F+ D+ ++L G+G I D+K+
Sbjct: 808 GENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCI-DIKK- 865
Query: 844 LEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKL 902
++ DTL K++ L LSE+MR+LYVA TR+++KL + G S EK
Sbjct: 866 ---------RIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916
Query: 903 GDQY---DGKSENNHLPVADREHYLTFQDWL-LAIEAAYAADELHFKTSFITDEDLT--- 955
+ + SE+N + + ++ DW+ +A+ D + I + D+T
Sbjct: 917 CENWCKASASSEDNRINPGNVLKGKSYLDWIGMALTKHKDGDAIR----NIGNGDITLNL 972
Query: 956 EDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEA----------------VEKLNQHY 999
+DK S + +++D L + + +D+ E+ ++L Y
Sbjct: 973 DDK--SNWSFKSWDRSELLETNNNKKEKNNIDIFESNNWIESKKDIKEVIEIRDRLGFKY 1030
Query: 1000 KAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSY----------QTKPKFEL-PQFSKK 1048
K ++ + TPS I E + E MQ SY K K + P+F ++
Sbjct: 1031 K---YIESCNTPSNI-SVTELKRAHQEEEFMQESYNIIDNESNEENKKEKIKRKPRFMEE 1086
Query: 1049 AKQDPTAL--GSSVHELMQRLHLSEQVSL----EDILTALAELSVEENVKKAIQVDKILH 1102
+++ +A G+ H +MQ + L + + E++L + + + E K + V KI
Sbjct: 1087 RQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKIQK 1146
Query: 1103 FFQTSQLGKLIQA--NADKVYREAPFAMLQADPAS-----------GEDYV-VRGIIDGY 1148
FF++ +++ + + KVYRE PF + P+S GE+ V ++GIID +
Sbjct: 1147 FFKSDLGQRMLSSYKSGKKVYRELPF--ITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204
Query: 1149 ILFDNRIVLFDYKTD--KFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
++ VL DYKTD K + +Y+ Q+ LY L++ + ++YL
Sbjct: 1205 FKEEDGYVLLDYKTDYVKEGEEENFINKYKIQINLYKDTLNKILGEEVKEAYL 1257
>gi|89205674|ref|ZP_01184242.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
gi|89156468|gb|EAR76468.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
Length = 1166
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 351/1211 (28%), Positives = 584/1211 (48%), Gaps = 180/1211 (14%)
Query: 91 LEKKITEQL-RLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRI 149
++ +I E L ++ D Q + +QL L A I T+ +F +++ Y Y L + P FRI
Sbjct: 1 MKNRIGEALEKVLIDGPGSQHIRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDPRFRI 60
Query: 150 LQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQ 209
+++E +LLK +V DD+ + + +F +LV + +R D + +++I ++ S+
Sbjct: 61 -ANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSD-DDLQRMILALHTESR 118
Query: 210 ATDNPQRW---LLENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDLED-- 262
A NP++W L+E + T +D +++ ++VK L T ++ ++ L D
Sbjct: 119 AHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEKHIRKATELAMLPDGP 178
Query: 263 ---------------YKQVTAKGTPTAAYQ----------RHLKMIEQLQDWVLHFDSLY 297
A+G+ T+ Y+ + +K + +D V DSL
Sbjct: 179 APRVETLQADLALLGTLSSAARGSWTSVYEAMQNVSWQTLKRIKKSDYNEDVVKRVDSLR 238
Query: 298 --GRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPL 355
+D + KL ++ + P S LR + + P+
Sbjct: 239 NKAKDEVKKLQEELFSRRP------------------ESFLRDFQDMH----------PV 270
Query: 356 LQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEN--------DAIRQLYIDKY 407
L+ L F++++ K + +F+D+ HF +QIL E A+ Y +K+
Sbjct: 271 LEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNKF 330
Query: 408 HEVMVDEYQDNNHTQERMLELLSNG----RNRFMVGDIKQSIYRFRQADPQIFNQKFKDF 463
EV+VDEYQD N QE +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F
Sbjct: 331 AEVLVDEYQDTNFVQESIIKFVTKDFESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRF 390
Query: 464 -QEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIP 522
QE G I L +NFRS+ EVL TN +F +M E VGEI YD +L G+S
Sbjct: 391 TQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAS----- 445
Query: 523 YPQNE---TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNE--------- 570
YP+ E ++L +++ QD + + L E +L+A+ I + +
Sbjct: 446 YPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQL-EARLMAQRIKAMVDSGYAVYDRKT 504
Query: 571 ---EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSI 627
VQ+ D +L+ S I++ GIP+ D Y ++ EV +M++ R I
Sbjct: 505 DSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVI 563
Query: 628 DNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLIT 687
DNP+ D L A+LRSP+ ++++LA L K + YE M + G + +
Sbjct: 564 DNPMQDIPLAAVLRSPIVGLNDEELATLRAHG----KKGSFYEVMSSFLKGAPLEEE--- 616
Query: 688 EALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALA 747
+ L KL+ F++ WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L
Sbjct: 617 QELHDKLEWFYKLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLY 676
Query: 748 LRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYV 806
RA +E T F+GL RF+R I++ILE +D+ + ++ V +MTIHKSKGLEF V
Sbjct: 677 DRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVV 736
Query: 807 FILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKR 866
F+ + ++F+ QD+ +L + G G ++I P ++ TL KR
Sbjct: 737 FVAGLGRRFNTQDLMKRFLLHKDFGFGSQFID-----------PRKRIKYTTLSQLAIKR 785
Query: 867 ELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNH-LPVADREHY 923
++++ ++E+MR+LYVA+TR+++KL L+G K + +++ D + + LP R
Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845
Query: 924 LTFQDW-------------LLAIEAAYAADELH-----FKTSFITDEDL------TEDKM 959
+ DW LL + E++ +K + +DL E+K
Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905
Query: 960 GSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYE 1019
LEA + A L+ R+ + R + Y+ A ++ ++IK+ Y+
Sbjct: 906 ELLEALRDKKAVPLESERKEEVYDRLM--------WKYGYEDATSHRAKQSVTEIKRNYQ 957
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDIL 1079
EG + P P+F +K G++VH +MQ + L + +++E +
Sbjct: 958 ---SEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQ 1014
Query: 1080 TALAELSVEE----NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFA-MLQADPA 1134
+A + +E + I ++K++ FF S LGK + A A V RE PF ML A+ A
Sbjct: 1015 EQIARMVNKELLTFEQAEEIAIEKVISFFD-SDLGKRVLA-AKSVEREVPFTMMLSAEEA 1072
Query: 1135 -------SGEDYVVRGIIDGYILFDNRIVLFDYKTD----KFTN-----SQAIKERYRGQ 1178
GE +V+G+ID I ++ I L D+KTD KF +++RY+ Q
Sbjct: 1073 YQDWQGKKGESILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQ 1132
Query: 1179 MTLYAQALSQS 1189
++LYA+AL +S
Sbjct: 1133 LSLYAKALEKS 1143
>gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
13124]
gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
13124]
Length = 1271
Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 371/1310 (28%), Positives = 630/1310 (48%), Gaps = 193/1310 (14%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T EQ AI T N+LV+A+AGSGKT V++ERI+ I G V ID+L + TFT A
Sbjct: 4 KWTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L + + L QL L A I TM +F +++ + + +
Sbjct: 64 ASEMRERIGDAISKALEKDPSS---EALQRQLALLNRASITTMHSFCLEVIKNNFHLIDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FRI D++E +L+K D+ DLF D D E F LV + G++ D N II K
Sbjct: 121 DPGFRI-GDQTECELIKQDILADLFEDMYAKDD-ECFKDLVEAYGGSKSDD-NLNSIILK 177
Query: 204 IYDFSQATDNPQRWL---LENFLKGANTYKDFSAIPEQEVKDFLNTLQETAL-----ALR 255
Y+F + P+ WL +E F + ++I E E K ++ L+E+ + A
Sbjct: 178 FYNFIMSGPWPETWLKDKVEEF--------NINSIEELEGKKWIEVLKESIILDLNNAYS 229
Query: 256 DVTDLEDYKQVTAKGTP--TAAYQRHLKMIE---QLQDWVLHFDSLYGRDGLGKL----- 305
+T D ++ P Y +++ E L + ++ F + G+L
Sbjct: 230 MLTQARDIAEMGGGLEPYLVNIYPEIIQVEELRIALSEGIVKFYNKLMGASFGRLKSVRK 289
Query: 306 -------ANDIATLIPSGNDVTVAGVKYPVFR-SLHSRLRGLKHLETIFKYQDQSLPLLQ 357
A + A + + + ++ VF SL + G+K + PL++
Sbjct: 290 ASVDDERALEKAKSLRDESKKIIENLRDNVFETSLEEAVLGMKKM----------YPLMK 339
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHE 409
L ++FS +Y K +++ +F+D+ H ++IL + D + + DK+ E
Sbjct: 340 CLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFEE 399
Query: 410 VMVDEYQDNNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE 465
V+VDEYQD+N QE ++ ++S N FMVGD+KQSIY+FRQA+P++F +K+ +++E
Sbjct: 400 VLVDEYQDSNTIQETIVGMVSRRDVENPNVFMVGDVKQSIYKFRQANPELFLEKYINYRE 459
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+ + I+L +NFRS+ E+++ N +F LM VGE+ YD+ L G+S ++
Sbjct: 460 FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALNLGASYGEL---- 515
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLG-----------------------EVKLVAK 562
NE V + +N +A + + N ++ E +++ K
Sbjct: 516 NEENVEKEYIDEIENLKVAGDIELNILNKAGNKEYRDDDELGEEEEDLDSIQLEARIIGK 575
Query: 563 EIIRLHNEE----------------KVQFEDITLLV-SSRTRNDGILQTFDDYGIPLVTD 605
+I L N E +++++DI +L+ +++ + + YGIP+ D
Sbjct: 576 KIKELMNPEDGSHYMVFDKDLGKYRRIKYKDIVILLRATKNWAETFVDELGTYGIPVYAD 635
Query: 606 GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHK 665
G Y +++E+ +L L IDNP+ D +++ LRSP+F+F ++ A L L N
Sbjct: 636 TG-TGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADLRLLN----KD 690
Query: 666 QNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
+ +E ++ +G + I++ L K F + WRE + + + IW +Y+D
Sbjct: 691 KYFFEIIKEVVDGIYDES--ISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLYSDTS 748
Query: 726 YYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-A 784
YY YVG++P QRQANL L RA +E T FKGL FI I+K+ ++ D+ ++
Sbjct: 749 YYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSAKILG 808
Query: 785 LPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEEL 844
+N V +M+IHKSKGLEF V + K+F+ D+ ++L G+G I D+K+
Sbjct: 809 ENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCI-DVKK-- 865
Query: 845 EEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLG 903
++ DTL K++ L LSE+MR+LYVA TR+++KL + G S EK
Sbjct: 866 --------RIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSC 917
Query: 904 DQY---DGKSENNHLPVADREHYLTFQDWL-LAIEAAYAADELHFKTSFITDEDLT---- 955
+ + S +N + + ++ DW+ +A+ D + I + D+T
Sbjct: 918 ENWCKASASSGDNRINPGNVLKGKSYLDWICMALTKHKDGDAIR----NIGNGDITLNLD 973
Query: 956 ---------EDKMGSLEAEQAYDADNLKDNRQSDD-ITRALDMLEAVE---KLNQHYKAA 1002
D+ LE N D +S++ I D+ E +E +L YK
Sbjct: 974 DKSNWSFKSWDRSELLETNNNKKEKNNIDIFESNNWIESKKDIKEVIEIRDRLGFKYK-- 1031
Query: 1003 IHLPTVRTPSQIKKFYEPVMETEGVEVMQTSY----------QTKPKFEL-PQFSKKAKQ 1051
++ + TPS I E + E MQ SY K K + P+F ++ ++
Sbjct: 1032 -YIESCNTPSNI-SVTELKRAHQEEEFMQESYNIIDNESNEENKKEKIKRKPRFMEERQE 1089
Query: 1052 DPTAL--GSSVHELMQRLHLSEQVSL----EDILTALAELSVEENVKKAIQVDKILHFFQ 1105
+ +A G+ H +MQ + L + + E++L + + + E K + V KI FF+
Sbjct: 1090 EFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKIQKFFK 1149
Query: 1106 TSQLGKLIQA--NADKVYREAPFAMLQADPAS-----------GEDYV-VRGIIDGYILF 1151
+ +++ + + KVYRE PF + P+S GE+ V ++GIID +
Sbjct: 1150 SDLGQRMLNSYKSGKKVYRELPF--ITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAFFEE 1207
Query: 1152 DNRIVLFDYKTD--KFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
++ VL DYKTD K + +Y+ Q+ LY L++ + ++YL
Sbjct: 1208 EDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYL 1257
>gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e]
gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes]
Length = 1235
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 358/1276 (28%), Positives = 619/1276 (48%), Gaps = 161/1276 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+A L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALGQNPDSA---HLKRQVALLNYASISTLHSFCLEIIRKYYFEADIDP 131
Query: 146 NFRI--------LQDKSEQDLLK-------NDVFDDLFTDYRTGDQAE-----LFTKLVR 185
+FR+ ++D+ + LL+ N+ F L + TGD+++ L +KL
Sbjct: 132 SFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESF-TGDRSDAELHSLISKLY- 189
Query: 186 NFAGNRKDSSNFRQIIYKIY---DFSQATDNPQRWLLE-----------NFLKGANTYKD 231
+F+ D + + + + Y + + T+ P +++ N+L A Y +
Sbjct: 190 DFSRANPDPNAWLEAMVNFYNTEEITSITELPYFPIIKEDIELRVNQAKNYLLNAINYAN 249
Query: 232 FSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDW-- 289
+ P +L TL+ + ++ +++L K + + + ++ D+
Sbjct: 250 ENNGPAP----YLATLENDLVQIQALSELNWSSWTHLKTSIENIDFKRIPTLKNKSDYDE 305
Query: 290 VLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ 349
V ++ RD K +IAT S +V S L +K
Sbjct: 306 VYVEEAKKFRDAAKKEMKNIATDWFSREEVNCL-----------SDLEKMK--------- 345
Query: 350 DQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDK 406
P +Q L FS + + K Q +F+D+ H A++IL +D + Q Y +
Sbjct: 346 ----PDIQTLSELVKKFSANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQ 401
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ EV++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++
Sbjct: 402 FKEVLIDEYQDTNMVQETILRLVTNPSEAQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQT 461
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
FQ+ +G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G++ +
Sbjct: 462 FQQDGSGNGIRIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTLGANFPET 521
Query: 522 PYPQNETQVLIYDTKDQQNQD--LAVEDDSNQISLGEVKLVAKEII---------RLHNE 570
+ E ++ T+D + +D E NQ+ + + +E+I +L
Sbjct: 522 NAMETELLLIDMKTEDTETEDELSPQELQKNQVESRAIAMKIREMIDNKFPIYDKKLKQN 581
Query: 571 EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNP 630
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ +DNP
Sbjct: 582 RPIQYRDIIILSRAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVVDNP 640
Query: 631 LNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEAL 690
D L A+LRSP+ +E++L ++ + + K Y+ + ++ +
Sbjct: 641 YQDIPLAAVLRSPIIGLNEEELGQIRMA----KKKGYFYDALLTYKD-------ITVSET 689
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA
Sbjct: 690 ANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRA 749
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFIL 809
+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 750 NQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVS 809
Query: 810 NIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKREL 868
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 810 GLSRKFNMRDIYSKTLLDKDYGFASSY-----RDVEKMIVYPTI---MQQAIKQKKSREM 861
Query: 869 RLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYLT 925
++E+MR+LYVA+TR+E+KL LV EK + K + LP A R
Sbjct: 862 ----IAEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKC 917
Query: 926 FQDW-------------LLAIEAAYA-ADELHFKTSFITDEDLTEDKMGSLEAEQAYDAD 971
+ DW LL E A E+ + T E +++ E++ +
Sbjct: 918 YLDWIGNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWL--E 975
Query: 972 NLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQ 1031
N+K+++ + D ++ + +AA + ++ +++K+ + + ++ +
Sbjct: 976 NIKEHQPVPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFS-LQDSWSDTTLL 1034
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVS---LEDILTALAELSVE 1088
+Q K + P+F +K K T +G+++H LMQ + L + + LE +L + E +
Sbjct: 1035 KEFQ-KVSLDRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDIL 1093
Query: 1089 ENVK-KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS--------GEDY 1139
+V+ KAI + +IL FF+ S LG+ + D V RE PF+ L P S E
Sbjct: 1094 TDVQIKAINIKQILDFFE-SPLGETMLQKKDLVKREVPFSYLL--PVSELYEKVDLDERV 1150
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQA--------IKERYRGQMTLYAQALSQSYN 1191
+++G++D I + I L DYKTDK A +KERY Q+ LYA+A+
Sbjct: 1151 LIQGVVDSMIEEEETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISG 1210
Query: 1192 IQQVDSYLILLGGEKL 1207
+ +YL G+ +
Sbjct: 1211 KKVAAAYLYFFDGQHI 1226
>gi|150391860|ref|YP_001321909.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
Length = 1197
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 362/1255 (28%), Positives = 613/1255 (48%), Gaps = 151/1255 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAGEL 87
T EQ AI G+N+L+SA+AGSGKT V++ERI+ IL+ + ID+L I TFT AAGE+
Sbjct: 5 TTEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKDKIDIDRLLIVTFTNAAAGEM 64
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
+ER+ I E++ T + L Q+ L A I T+ +F +V ++ + + + P F
Sbjct: 65 RERIAGAIMEEME--RKTEQEAHLRRQINLLNRASITTIHSFCIDVVRRHFHIIDVDPGF 122
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
RI D +E +++ + ++LF + G E F +LV F G ++D + ++ K+Y F
Sbjct: 123 RI-GDITETSIMRLEALEELFEEEYQGAH-ETFFRLVEAFGGTKEDRP-LQDLVLKVYGF 179
Query: 208 SQATDNPQRWLLENFLKGANTYKDFS------------AIPEQEVKDFLNTLQETAL--- 252
Q+ P+ WL E + + +DF I + D LN A
Sbjct: 180 IQSQPYPEVWLKEKVGDFSLSIEDFDESLWIKTIKSRIEIQLKGAMDLLNNALSIAQEPG 239
Query: 253 --ALRDVTDLEDYKQVT----AKGTPTAAYQRHLKMIEQLQ-------DWVLHFDSLYGR 299
+ + L D Q++ + P ++ HL I + D VL +S R
Sbjct: 240 GPEVYEEAILSDLGQISELYDSLTLPITSFYEHLNHINHARLKPSKESDPVLKEESKNLR 299
Query: 300 DGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVL 359
D + DI N TV+ Y +E + K PL+ L
Sbjct: 300 DKAKGIIKDI-----KDNIFTVSPEAY---------------VEDLNKLH----PLMDYL 335
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNN 419
F+ +Y Q K +F+D+ H+ ++IL N+ + Q Y ++ + VDEYQD+N
Sbjct: 336 YQLVTGFTSRYAQKKADRGIVDFNDLEHYGLEIL-ANELVAQEYQQRFEYIFVDEYQDSN 394
Query: 420 HTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP-EHGKLILLKEN 478
QE +++ + N FMVGD+KQSIYRFR ADP +F +K++ F E + + I L +N
Sbjct: 395 IVQETLIQSIKRKDNLFMVGDVKQSIYRFRLADPSLFIEKYETFGEKEGDINRRIDLAKN 454
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538
FRS+ EVL N +F ++M + +GEI YD L G+S + I P E ++ + +
Sbjct: 455 FRSRGEVLAGVNYLFKYIMSKELGEIGYDHRAALYQGASFESIKEPSIEVNLIEKNMEID 514
Query: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE----------KVQFEDITLLV-SSRTR 587
++ + +++ ++ I + E +++AK I L NEE +++F+DI +L+ +++
Sbjct: 515 EDIEEELQELAD-IEV-EARIIAKRIKDLLNEEIYDEKNEVYRRLEFKDIVVLLRTTKNW 572
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
L+ F GIP D Y +++EV + L+ L+ IDN D L++++RSP+ F
Sbjct: 573 AQSFLEAFIREGIPAYAD-ANTGYFEAIEVGMFLNLLKVIDNKRQDIPLISVMRSPIGEF 631
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
+L + + + Y+ +E + ++ +AL KL +F E W
Sbjct: 632 TTAELIDIRIND----KNGTYYDAIE-------KYIEKNEDALKDKLVSFIEKLNKWGNE 680
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM 767
+ + IWK+ D +Y YVG++P QRQANL L RA FEKT KGL FI+
Sbjct: 681 ARYIKIDQFIWKLLMDTGFYYYVGAMPGGLQRQANLRILFDRASQFEKTSIKGLFNFIKF 740
Query: 768 IDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
I+K+ ++ D+ ++ N V +M+IHKSKGLEF V + K F+++D ++ ++L
Sbjct: 741 IEKLQGSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVIAAGMGKNFNLRDTSADVLL 800
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+ G+G K++ ++ D++ K ++++ +LSE+MR+LYVA TR
Sbjct: 801 HKDLGLGPKFVDS-----------NLRTYRDSIAKLAMKDQIKIESLSEEMRILYVAFTR 849
Query: 887 SEKKLYLVGKGSQ-EKLGDQYDGKSENNHLPVADREHYLTFQDWLLAI------------ 933
+ KL +VG + ++L ++ +N + + + YL DW+ A
Sbjct: 850 PKDKLIIVGSLRKIDRLVTNWN--QADNIYSLMNAKSYL---DWIGAALIKHPHGEVLRE 904
Query: 934 -------EAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRAL 986
E Y A++ + + + + + ++ E+ Y NR+ R
Sbjct: 905 LGDFEFNELKYKAEDSKWTVNILGRQAVVLEEHEKRLKEEEYKEKLTHFNREDFSPHRHT 964
Query: 987 DMLEAVE-KLNQH--YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELP 1043
+ E ++ +LN Y A +P+ + S IKK M++ +Q + P
Sbjct: 965 EHKEEIDNRLNWQYPYPQATVIPSKLSVSDIKKANMGEMDS-------IVHQIPTLVKTP 1017
Query: 1044 QFSKKAKQDPTA-LGSSVHELMQRLHLSEQVSLEDI-----LTALAELSVEENVKKAIQV 1097
+F + K A G+ +H ++Q L L++ S E+I L EL EE + + V
Sbjct: 1018 KFMEGKKALTAAERGTIIHFVLQHLALNQVGSEEEISQQIDLMVARELITEEEA-QVVNV 1076
Query: 1098 DKILHFFQTSQLGKLIQANADKVYREAPFAMLQA--DPASG------EDYVVRGIIDGYI 1149
KI+++F+ S++GK + A+KVYRE+PF + ++ D G E +V+G+ID Y
Sbjct: 1077 GKIVNYFK-SEIGKRM-LGAEKVYRESPFIIEKSAKDVIHGLSENLEEKLLVQGVIDCYF 1134
Query: 1150 LFDNRIVLFDYKTDKFTN--SQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
+ +VL DYK D N + +I RY Q+ +YA+AL + Q ++YL L
Sbjct: 1135 EEMDGLVLVDYKNDIVLNGDTASIMTRYDVQLMMYAEALERITGKQVKETYLYLF 1189
>gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 1227
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 366/1267 (28%), Positives = 603/1267 (47%), Gaps = 125/1267 (9%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAG 85
K TP+Q AI + G ++LVSASAGSGKT V++ER++ +I+ + ++QL + TFT AA
Sbjct: 4 KYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAAS 63
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K+R+++++ ++L+ D + FL QL + TA I T+D+F ++ ++ + + I P
Sbjct: 64 EMKQRIKQRLQDRLQEETDASQADFLRRQLAEIDTAIISTIDSFCLDVIRRFYFAIDIDP 123
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDY-RTGDQA--ELFTKLVRNFAGNRKDSSNFRQIIY 202
+F IL D ++ +LLK D+ Y + DQA + F L FAG+ ++++ R +++
Sbjct: 124 DFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLALYDAFAGD-SNANSARDLLF 182
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDF--SAIPEQEVKDFL----NTLQETALALRD 256
+Y F+ A N + WL + D S + ++++K +L + L + AL
Sbjct: 183 DLYQFAMARPNYRAWLQKLAAPYQLETSDVVDSTLWQEKIKPYLEEEFSNLADKLTALMA 242
Query: 257 VTDLEDYK------QVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
D + K TA T A+Y+ L + D + DG + +IA
Sbjct: 243 EADFDHEKFAKYQPAFTAFATSLASYRESLATDDPF-DRQRELLAACQFDGTLRTNKEIA 301
Query: 311 TLIPSGNDVTVAGVK--YPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
+ +V AG + + V+ S ++ +H + + L F
Sbjct: 302 DFVEEAKEVKEAGKQLVFNVYTSFYASSNADQH-----ALLAKGAEIASAAAEVELAFID 356
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEN----DAIRQLYIDKYHEVMVDEYQDNNHTQER 424
++ + K + +FSD+ A +IL ++ D R Y ++ E+MVDEYQD N Q+
Sbjct: 357 RFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDG 416
Query: 425 MLELLSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKENFRS 481
+++ L N FMVGD+KQSIY FRQA+P +F K+ ++ QE+ + I+ ENFRS
Sbjct: 417 LIQRLKKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGKQRIIFAENFRS 476
Query: 482 QSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQ 541
V A N +F L+ + G I Y QL + ET+VL +
Sbjct: 477 SQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLY-------QE 529
Query: 542 DLAVEDDSNQISLGEVKLVAKEIIRLHNEEK------------VQFEDITLLVSSRTRND 589
D + DD +++ G++ +V I +L ++ V + DI +L S+T N
Sbjct: 530 DSSATDDDGELNQGDLAMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIAILTRSKTSNL 589
Query: 590 GILQTFDDYGIPL-VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
I Q FD YG+PL V D QNY ++ E+ V++ L+ IDNP D LVA+LRSP+F F
Sbjct: 590 DIKQEFDRYGVPLFVMD--VQNYFQTFELTVIMSYLKIIDNPDQDIPLVAVLRSPIFNFS 647
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
DLA + L N + Y + L+A+ F R+FS
Sbjct: 648 SSDLAEIRLVN----KSVSFYAALRTYAKKDTD--------LAARCRDFLAQLQDLRDFS 695
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
L + + +L+W IY + + V ++ +QR+ NL AL RA +E +GFK L +FI I
Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755
Query: 769 DKILENQNDLAD-VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ-DMTSPLIL 826
++ +NQ DLA + N+V LMTIH SKGLEF VF+L ++ +++ Q D+T +L
Sbjct: 756 ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+G+G+ + E + DTL K + L E+ RLLYVA+TR
Sbjct: 816 D-ASGLGLSFAYPFDE---------AEYRADTLANAWLKIAKKKKLLEEEARLLYVALTR 865
Query: 887 SEKKLYLVG------KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL-AIEAAYAA 939
+++KL L + L +++ + L + D+ D+L A+ A
Sbjct: 866 AKQKLILAANIKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQV 925
Query: 940 DELHFKTSFITDEDLTEDKMGSL-------EAEQAYDADNLKDNRQSDDITR-ALDMLEA 991
L K DL + GSL + +QA D+ D+T + +
Sbjct: 926 KRLGEKAV----SDLATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQ 981
Query: 992 VEKLNQHYKAAI-HLPTVRTP-----SQIKKFYEPVMETEGVEVMQTSYQT-----KPKF 1040
EKL + +L RT S+IKK + +E E + + Q+ +P
Sbjct: 982 AEKLYTFSQGGYPYLDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPID 1041
Query: 1041 ELPQFSKKAKQDPTALGSSVHELMQRLHLS--EQVSLEDILTALAELSVEENVKKAIQVD 1098
P F + LG++ H ++Q + ++ +++ + L E ++
Sbjct: 1042 TEPDFLFQNTVSSAELGTASHLVLQYYDYAKGDKDAIDSCIAGLVEKGRLSQTLASMLDR 1101
Query: 1099 KILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY-------VVRGIIDGYILF 1151
+ L +F S K D+++RE FA + + +D+ +V G IDGY
Sbjct: 1102 EALSWFVKSDFAKDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEA 1161
Query: 1152 DNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGE 1205
+N I+LFDYKTD Q +KE+Y+GQ+ LY +AL++S + + YL+LL
Sbjct: 1162 ENGIILFDYKTDHVNPRKQDEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCR 1221
Query: 1206 KLEVVEI 1212
E+VE+
Sbjct: 1222 --EIVEV 1226
>gi|153175532|ref|ZP_01930890.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N3-165]
gi|133729451|gb|EBA31149.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N3-165]
Length = 1235
Score = 389 bits (998), Expect = e-105, Method: Composition-based stats.
Identities = 357/1276 (27%), Positives = 619/1276 (48%), Gaps = 161/1276 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+A L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALGQNPDSA---HLKRQVALLNYASISTLHSFCLEIIRKYYFEADIDP 131
Query: 146 NFR--------ILQDKSEQDLLK-------NDVFDDLFTDYRTGDQAE-----LFTKLVR 185
+FR +++D+ + LL+ N+ F L + TGD+++ L +KL
Sbjct: 132 SFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESF-TGDRSDAELHSLISKLY- 189
Query: 186 NFAGNRKDSSNFRQIIYKIY---DFSQATDNPQRWLLE-----------NFLKGANTYKD 231
+F+ D + + + + Y + + T+ P +++ N+L A Y +
Sbjct: 190 DFSRANPDPNAWLEAMVNFYNTEEITSITELPYFPIIKEDIELRVNQAKNYLLNAINYAN 249
Query: 232 FSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDW-- 289
+ P +L TL+ + ++ +++L K + + + ++ D+
Sbjct: 250 ENNGPAP----YLATLENDLVQIQALSELNWSSWTHLKTSIENIDFKRIPTLKNKSDYDE 305
Query: 290 VLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ 349
V ++ RD K +IAT S +V S L +K
Sbjct: 306 VYVEEAKKFRDAAKKEMKNIATDWFSREEVNYL-----------SDLEKMK--------- 345
Query: 350 DQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDK 406
P +Q L F+ + + K Q +F+D+ H A++IL +D + Q Y +
Sbjct: 346 ----PDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQ 401
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ EV++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++
Sbjct: 402 FKEVLIDEYQDTNMVQETILRLVTNPSEAQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQT 461
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
FQ+ +G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G++ +
Sbjct: 462 FQQDGSGNGIRIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTLGANFPET 521
Query: 522 PYPQNETQVLIYDTKDQQNQD--LAVEDDSNQISLGEVKLVAKEII---------RLHNE 570
+ E ++ T+D + +D E NQ+ + + +E+I +L
Sbjct: 522 NAMETELLLIDMKTEDTETEDELSPQELQKNQVESRAIAMKIREMIDNKFPIYDKKLKQN 581
Query: 571 EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNP 630
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ +DNP
Sbjct: 582 RPIQYRDIVILSRAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVVDNP 640
Query: 631 LNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEAL 690
D L A+LRSP+ +E++L ++ + + K Y+ + ++ +
Sbjct: 641 YQDIPLAAVLRSPIIGLNEEELGQIRMA----KKKGYFYDALLTYKD-------ITVSET 689
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA
Sbjct: 690 ANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRA 749
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFIL 809
+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 750 NQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVS 809
Query: 810 NIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKREL 868
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 810 GLSRKFNMRDIYSKTLLDKDYGFASSY-----RDVEKMIVYPTI---MQQAIKQKKSREM 861
Query: 869 RLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYLT 925
++E+MR+LYVA+TR+E+KL LV EK + K + LP A R
Sbjct: 862 ----IAEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKC 917
Query: 926 FQDW-------------LLAIEAAYA-ADELHFKTSFITDEDLTEDKMGSLEAEQAYDAD 971
+ DW LL E A E+ + T E +++ E++ +
Sbjct: 918 YLDWIGNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWL--E 975
Query: 972 NLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQ 1031
N+K+++ + D ++ + +AA + ++ +++K+ + + ++ +
Sbjct: 976 NIKEHQPVPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFS-LQDSWSDTTLL 1034
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVS---LEDILTALAELSVE 1088
+Q K + P+F +K K T +G+++H LMQ + L + + LE +L + E +
Sbjct: 1035 KEFQ-KVSLDRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDIL 1093
Query: 1089 ENVK-KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS--------GEDY 1139
+V+ KAI + +IL FF+ S LG+ + D V RE PF+ L P S E
Sbjct: 1094 TDVQIKAINIKQILDFFE-SPLGETMLQKKDLVKREVPFSYLL--PVSELYEKVDLDERV 1150
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQA--------IKERYRGQMTLYAQALSQSYN 1191
+++G++D I + I L DYKTDK A +KERY Q+ LYA+A+
Sbjct: 1151 LIQGVVDSMIEEEETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISG 1210
Query: 1192 IQQVDSYLILLGGEKL 1207
+ +YL G+ +
Sbjct: 1211 KKVAAAYLYFFDGQHI 1226
>gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
F6854]
gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
F6854]
Length = 1235
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 357/1276 (27%), Positives = 618/1276 (48%), Gaps = 161/1276 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+A L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALGQNPDSA---HLKRQVALLNYASISTLHSFCLEIIRKYYFEADIDP 131
Query: 146 NFR--------ILQDKSEQDLLK-------NDVFDDLFTDYRTGDQAE-----LFTKLVR 185
+FR +++D+ + LL+ N+ F L + TGD+++ L +KL
Sbjct: 132 SFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESF-TGDRSDAELHSLISKLY- 189
Query: 186 NFAGNRKDSSNFRQIIYKIY---DFSQATDNPQRWLLE-----------NFLKGANTYKD 231
+F+ D + + + + Y + + T+ P +++ N+L A Y +
Sbjct: 190 DFSRANPDPNAWLEAMVNFYNTEEITSITELPYFPIIKEDIELRVNQAKNYLLNAINYAN 249
Query: 232 FSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDW-- 289
+ P +L TL+ + ++ +++L K + + + ++ D+
Sbjct: 250 ENNGPAP----YLATLENDLVQIQALSELNWSSWTHLKTSIENIDFKRIPTLKNKSDYDE 305
Query: 290 VLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ 349
V ++ RD K +IAT S +V S L +K
Sbjct: 306 VYVEEAKKFRDAAKKEMKNIATDWFSREEVNYL-----------SDLEKMK--------- 345
Query: 350 DQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDK 406
P +Q L F+ + + K Q +F+D+ H A++IL +D + Q Y +
Sbjct: 346 ----PDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQ 401
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ EV++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++
Sbjct: 402 FKEVLIDEYQDTNMVQETILRLVTNPSEAQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQT 461
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
FQ+ +G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G++ +
Sbjct: 462 FQQDGSGNGIRIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTLGANFPET 521
Query: 522 PYPQNETQVLIYDTKDQQNQD--LAVEDDSNQISLGEVKLVAKEII---------RLHNE 570
E ++ T+D + +D E NQ+ + + +E+I +L
Sbjct: 522 NAMATELLLIDMKTEDTETEDELSPQELQKNQVESRVIAMKIREMIDNKFPIYDKKLKQN 581
Query: 571 EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNP 630
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ +DNP
Sbjct: 582 RPIQYRDIIILSRAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVVDNP 640
Query: 631 LNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEAL 690
D L A+LRSP+ +E++L ++ + + K Y+ + ++ +
Sbjct: 641 YQDIPLAAVLRSPIIGLNEEELGQIRMA----KKKGYFYDALLTYKD-------ITVSET 689
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA
Sbjct: 690 ANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRA 749
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFIL 809
+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 750 NQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVS 809
Query: 810 NIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKREL 868
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 810 GLSRKFNMRDIYSKTLLDKDYGFASSY-----RDVEKMIVYPTI---MQQAIKQKKSREM 861
Query: 869 RLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYLT 925
++E+MR+LYVA+TR+E+KL LV EK + K + LP A R
Sbjct: 862 ----IAEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKC 917
Query: 926 FQDW-------------LLAIEAAYA-ADELHFKTSFITDEDLTEDKMGSLEAEQAYDAD 971
+ DW LL E A E+ + T E +++ E++ +
Sbjct: 918 YLDWIGNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWL--E 975
Query: 972 NLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQ 1031
N+K+++ + D ++ + +AA + ++ +++K+ + + ++ +
Sbjct: 976 NIKEHQPVPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFS-LQDSWSDTTLL 1034
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVS---LEDILTALAELSVE 1088
+Q K + P+F +K K T +G+++H LMQ + L + + LE +L + E +
Sbjct: 1035 KEFQ-KVSLDRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDIL 1093
Query: 1089 ENVK-KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS--------GEDY 1139
+V+ KAI + +IL FF+ S LG+ + D V RE PF+ L P S E
Sbjct: 1094 TDVQIKAINIKQILDFFE-SPLGETMLQKKDLVKREVPFSYLL--PVSELYEKVDLDERV 1150
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQA--------IKERYRGQMTLYAQALSQSYN 1191
+++G++D I + I L DYKTDK A +KERY Q+ LYA+A+
Sbjct: 1151 LIQGVVDSMIEEEETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISG 1210
Query: 1192 IQQVDSYLILLGGEKL 1207
+ +YL G+ +
Sbjct: 1211 KKVAAAYLYFFDGQHI 1226
>gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 1227
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 365/1267 (28%), Positives = 601/1267 (47%), Gaps = 125/1267 (9%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG-VTIDQLFISTFTVKAAG 85
K TP+Q AI + G ++LVSASAGSGKT V++ER++ +I+ + ++QL + TFT AA
Sbjct: 4 KYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAAS 63
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K+R+++++ ++L+ D + FL QL + TA I T+D+F ++ ++ + + I P
Sbjct: 64 EMKQRIKQRLQDRLQEETDASQADFLRRQLAEIDTAIISTIDSFCLDVIRRFYFAIDIDP 123
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDY-RTGDQA--ELFTKLVRNFAGNRKDSSNFRQIIY 202
+F IL D ++ +LLK D+ Y + DQA + F L FAG+ ++++ R ++
Sbjct: 124 DFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLALYDAFAGD-SNANSARDLLL 182
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDF--SAIPEQEVKDFL----NTLQETALALRD 256
+Y F+ A N + WL + D SA+ ++++K +L + L + AL
Sbjct: 183 DLYQFAMARPNYRAWLQKLAAPYQLETSDVVDSALWQEKIKPYLEEEFSNLADKLTALMA 242
Query: 257 VTDLEDYK------QVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
D + K TA T A+Y+ L + D + DG + +IA
Sbjct: 243 EADFDHEKFAKYQPAFTAFATSLASYRESLATDDPF-DRQRELLAACQFDGTLRTNKEIA 301
Query: 311 TLIPSGNDVTVAGVK--YPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368
+ +V AG + + V+ ++ + + + L F
Sbjct: 302 DFVEEAKEVKEAGKQLVFNVYTGFYASSNADQQ-----ALLAKGAEIASAAAEVELAFID 356
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEEN----DAIRQLYIDKYHEVMVDEYQDNNHTQER 424
++ + K + +FSD+ A +IL ++ D R Y ++ E+MVDEYQD N Q+
Sbjct: 357 RFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDG 416
Query: 425 MLELLSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKENFRS 481
+++ L N FMVGD+KQSIY FRQA+P +F K+ ++ QE+ + I+ ENFRS
Sbjct: 417 LIQRLKKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGKQRIIFAENFRS 476
Query: 482 QSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQ 541
V A N +F L+ + G I Y QL + ET+VL +
Sbjct: 477 SQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLY-------QE 529
Query: 542 DLAVEDDSNQISLGEVKLVAKEIIRLHNEEK------------VQFEDITLLVSSRTRND 589
D + DD +++ G++ +V I +L ++ V + DI +L S+T N
Sbjct: 530 DSSATDDDGELNQGDLAMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIAILTRSKTSNL 589
Query: 590 GILQTFDDYGIPL-VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
I Q FD YG+PL V D QNY ++ E+ V++ L+ IDNP D LVA+LRSP+F F
Sbjct: 590 DIKQEFDRYGVPLFVMD--VQNYFQTFELTVIMSYLKIIDNPDQDIPLVAVLRSPIFNFS 647
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
DLA + L N + Y + L+A+ F R+FS
Sbjct: 648 SSDLAEIRLVN----KSVSFYAALRTYAKKDTD--------LAARCRDFLAQLQDLRDFS 695
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
L + + +L+W IY + + V ++ +QR+ NL AL RA +E +GFK L +FI I
Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755
Query: 769 DKILENQNDLAD-VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ-DMTSPLIL 826
++ +NQ DLA + N+V LMTIH SKGLEF VF+L ++ +++ Q D+T +L
Sbjct: 756 ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+G+G+ + E + DTL K + L E+ RLLYVA+TR
Sbjct: 816 D-ASGLGLSFAYPFDE---------AEYRADTLANVWLKIAKKQKLLEEEARLLYVALTR 865
Query: 887 SEKKLYLVG------KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL-AIEAAYAA 939
+++KL L + L +++ + L + D+ D+L A+ A
Sbjct: 866 AKQKLILAANIKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQV 925
Query: 940 DELHFKTSFITDEDLTEDKMGSL-------EAEQAYDADNLKDNRQSDDITR-ALDMLEA 991
L K DL + GSL + +QA D+ D+T + +
Sbjct: 926 KRLGEKAV----SDLATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQ 981
Query: 992 VEKLNQHYKAAI-HLPTVRTP-----SQIKKFYEPVMETEGVEVMQTSYQT-----KPKF 1040
EKL + +L RT S+IKK + +E E + + Q+ +P
Sbjct: 982 AEKLYTFSQGGYPYLDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPID 1041
Query: 1041 ELPQFSKKAKQDPTALGSSVHELMQRLHLS--EQVSLEDILTALAELSVEENVKKAIQVD 1098
P F + LG++ H ++Q + ++ +++ + L E ++
Sbjct: 1042 TEPDFLFQNTVSSAELGTASHLVLQYYDYAKGDKNAIDSCIAGLVEKGRLSQTLASMLDR 1101
Query: 1099 KILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY-------VVRGIIDGYILF 1151
+ L +F S K D+++RE FA + + +D+ +V G IDGY
Sbjct: 1102 EALSWFVKSDFAKDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEA 1161
Query: 1152 DNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGE 1205
+N I+LFDYKTD Q +KE+Y+GQ+ LY +AL++S + + YL+LL
Sbjct: 1162 ENGIILFDYKTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCR 1221
Query: 1206 KLEVVEI 1212
E+VE+
Sbjct: 1222 --EIVEV 1226
>gi|76795469|ref|ZP_00777842.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus ATCC 33223]
gi|76589277|gb|EAO65676.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus ATCC 33223]
Length = 1233
Score = 385 bits (989), Expect = e-105, Method: Composition-based stats.
Identities = 369/1284 (28%), Positives = 634/1284 (49%), Gaps = 170/1284 (13%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI T G+N+LV+A+AGSGKT V++ERI++ I V ID+L + TFT A
Sbjct: 4 KWTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ + + + + + + L+ QL L A I T+ +F ++V + L +
Sbjct: 64 ASEMRERIAEAL---IAILDQNPEDKRLANQLTLLNKATITTIHSFCLEVVRNNFFLLDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQ-AELFTKLVRNFAGNRKDSSNFRQII 201
PNFRI D +E LL+ + ++LF + Y D+ E F LV ++ G KD + + I+
Sbjct: 121 DPNFRI-GDDTETLLLQLEASEELFEEMYAKEDKDKEGFLTLVESYGGT-KDDQDLQDIL 178
Query: 202 YKIYDFSQATDNPQRWLLE--NFLKGANTYK-DFSAIPEQ-------EVKDFLNTLQETA 251
++Y F ++ P++WL + N + + +K + S E E+ LNT+
Sbjct: 179 LRLYGFVRSLPWPEKWLKDVINTFRVEDNFKFETSKWAEVILDSLKVEISGILNTMLVAV 238
Query: 252 LALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIAT 311
L++ LE Y A+QR IEQL + D + N I
Sbjct: 239 DKLKNEAGLEGYFH---------AFQREAYEIEQLLQY----------DNWNEFKNHIQA 279
Query: 312 L----IPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQS----------LPLLQ 357
+ +P+ VK V ++ +++ + D P+++
Sbjct: 280 IEFERLPNAGKDANKNVKEEV-SNIRKKVKDKIKEIKEKFFSDSVEEIKDEIKALYPIME 338
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHE 409
L L F K+Y + K ++ +F+DI HFA+QIL E D + Y +K+ E
Sbjct: 339 ALADLILLFDKKYKEKKREKGIIDFNDIEHFALQILTEIDEEGAVNPSEVALHYREKFEE 398
Query: 410 VMVDEYQDNNHTQERMLELLS--NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EH 466
+ VDEYQD+N QE +L +++ N NRFMVGD+KQSIYRFRQA+P IF +K+ + +
Sbjct: 399 IFVDEYQDSNLIQEEILSIIARENPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYSLDT 458
Query: 467 PEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN 526
E + ILL +NFRS+ EV++A N +F +M + +GE+ Y + +L G+ + IP +
Sbjct: 459 GEKNQKILLYKNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYE-IPPEDS 517
Query: 527 ET------------------QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLH 568
T + + ++++ + ED + I + E ++VA+ I +L
Sbjct: 518 VTGGAVELHLIEKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQV-EARVVAERIKQLF 576
Query: 569 NE------------EKVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGEQNYLKSV 615
++ V + DI +L+ + R + L+ GIP D G Y +
Sbjct: 577 SQNFMVYDKNIKSYRVVDYRDIVVLLRATDRWAPVFLEELTQAGIPAFADTG-TGYFDTT 635
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
E+ ++ L+ IDNP+ D L+A+LRSP+F+F E++L L L+++ ++ +YE ++ A
Sbjct: 636 EIKTIISLLQVIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDM----EKTIYEAIKKA 691
Query: 676 RNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPK 735
+ + L K F +T W+E ++ + + +W +Y D YY YV ++P+
Sbjct: 692 SQRE--------DELGEKAKNFLDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQ 743
Query: 736 SEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMT 794
QRQANL L RA +E+T FKGL FI I+++ + D+ + V +N V +M+
Sbjct: 744 GVQRQANLRILFERAKQYEETSFKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMS 803
Query: 795 IHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKV 854
IHKSKGLEF V + + K+F+ +D+ ++ G+G +++ D + ++
Sbjct: 804 IHKSKGLEFPVVIVAGLGKQFNTKDLYQKILYHHFLGLGPEFV-DFRR----------RI 852
Query: 855 SMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG-----KGSQEKLGDQYDGK 909
S ++ + K +++L LSE+MR+LYVA+TR+++KL LVG K + K + +
Sbjct: 853 SYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRAKEKLILVGSARDIKKNVRKWANAAILQ 912
Query: 910 SENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYD 969
+ + + + + Y+ DW+ A A +L F E+ E +
Sbjct: 913 EKVSEYDILNGKSYM---DWIGA--AVIRHKDLEPLREFAGVSLSEEEDASKWEVKLWNK 967
Query: 970 ADNLKDNRQSDDIT-----RALDM--------LEAVEKLN--QHYKAAIHLPTVRTPSQI 1014
D L + ++D + R+LD+ E +LN Y+ A +LP + +++
Sbjct: 968 KDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERRLNYVYPYEKACYLPAKLSVTEV 1027
Query: 1015 KKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTA-LGSSVHELMQRLHLSEQV 1073
K+ ++ E V+ TS + + P F +K K A G ++H +MQ+L L + +
Sbjct: 1028 KR----ILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAEKGIAMHLVMQKLDLDKDL 1083
Query: 1074 SLEDILTALAELS----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML 1129
SLE I + ++ + E K + + KI FF+TS +++ ++ V RE PF +
Sbjct: 1084 SLEGIKEQIKDMVDREILTEEQAKEVNIHKIEGFFKTSLGERML--SSKNVKREVPFHIK 1141
Query: 1130 QA---------DPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQA--IKERYRGQ 1178
+ + E V+GIID + ++ +VL DYKTD + IKERY+ Q
Sbjct: 1142 LSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKTDYVQEGKVEEIKERYKVQ 1201
Query: 1179 MTLYAQALSQSYNIQQVDSYLILL 1202
+ LY++AL + + Y+ L
Sbjct: 1202 IELYSKALENITGKKVKEKYIYLF 1225
>gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
thermopropionicum SI]
gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
thermopropionicum SI]
Length = 1269
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 359/1294 (27%), Positives = 584/1294 (45%), Gaps = 173/1294 (13%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKI---LRGVTIDQLFISTFTVKAAG 85
T EQ+EAI G ++LV+ASAG+GKT V+ ERI+ +I ++ V +D+L + TFT AA
Sbjct: 20 TAEQLEAISARGGDVLVAASAGTGKTAVLAERIIRRITDPIKPVDVDRLLVVTFTSAAAA 79
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ER+ + ++ ++ L Q L A I T+ +F L+ Q+ Y +G+ P
Sbjct: 80 EMRERIRLALAREISRRPESG---HLQRQAALLGRACISTVHSFCLDLLRQHFYRIGLDP 136
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
+FR+ D++E L++ +++F + R + +F LV + G R D + ++++ Y
Sbjct: 137 SFRV-ADETEAALIQTGALEEVF-ERRYAAEDNIFAALVDCYGG-RHDDALLQELVLDAY 193
Query: 206 DFSQATDNPQRWLLENFLKGANTY--KDFSAIPEQEVKDFLNTLQETALALRDVTDLEDY 263
F+++T P+ WL + +G N F P V L E LA DLE
Sbjct: 194 KFARSTPWPEDWL-DGLAEGFNLPGGASFDRTPWSAV---LKQAAEIELA-GARADLEAA 248
Query: 264 KQVTAK-GTPTAAYQRHLKMIEQLQDWVLHF-DSLYGRDGLGKLANDIATLIPS------ 315
++ + G P Q +L +EQ D V S +L + ++ S
Sbjct: 249 LRIAREPGGP----QAYLANLEQEHDLVCRLLQSCRTNAPWAELYSYFKEVVFSPLKQCR 304
Query: 316 --GNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQD------QSLPLLQVLQSFTLDFS 367
D+ +AG S ++ +K +D + PL++ L +F
Sbjct: 305 KEDADLKLAGQARNFRESAKKKVMQVKSRYFSLPPEDLCADLRRMAPLIKELAGLVREFD 364
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEEN-------DAIRQLYIDKYHEVMVDEYQDNNH 420
Y +AK +F+D+ H+ +Q+L E + +K+ EV+VDEYQD N
Sbjct: 365 ATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQEKFVEVLVDEYQDINA 424
Query: 421 TQERMLELLSNG----RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE--HGKLIL 474
QE +L+++S N FMVGD+KQSIYRFR A+P +F +K+ F G+ +
Sbjct: 425 VQETILQMVSRKGEGQSNLFMVGDVKQSIYRFRLAEPGLFLKKYASFSAGTGGGQGRRLA 484
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ---NETQVL 531
L NFRS+ V+ A N +F +M AVGE+ Y LV G+ +P Q E L
Sbjct: 485 LTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDAMLVYGADYPPVPEGQGNYEEAVEL 544
Query: 532 IYDTKDQQNQDLAVEDDSNQISLG-----------------EVKLVAKEI---------- 564
+ +D +D + + + G E +LVA+ I
Sbjct: 545 HLVERGPAGKDGGGDDPAGEEADGGVEAVEEIEEELEAGQKEARLVARRIKELLGGSPGG 604
Query: 565 ---IRLHNEEKVQFEDIT------LLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSV 615
+ +++ E ++ +T LL ++ + ++ F GIP + Y +S
Sbjct: 605 EHALEIYDRELKKYRPLTYRDVAVLLRATAGYANSFVEEFRREGIPAYAEL-STGYFEST 663
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
EV ++ L+ IDNP D L +LRSP DLAR+ L + + + Y+ + A
Sbjct: 664 EVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKAGDLARIRLAS----PRGDFYDAVVAA 719
Query: 676 R-NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLP 734
GQG+ LS +L F + WR + +L DLIW +Y D YYD+ G LP
Sbjct: 720 SLAGQGE--------LSERLADFLKKLEEWRTIARQGTLADLIWAVYRDTGYYDFTGCLP 771
Query: 735 KSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLM 793
QRQANL AL RA FE T F+GL F+R I+++ E D + K N V +M
Sbjct: 772 GGGQRQANLRALHDRARQFETTAFRGLFLFLRFIERLREGGRDFGAARLLSEKENVVRIM 831
Query: 794 TIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVK 853
+IHKSKGLEF VF+ + + F+ +++ ++ + G+G + + +
Sbjct: 832 SIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVD-----------AEAR 880
Query: 854 VSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQYDGKSEN 912
V+ T K L++ L+E+MR+LYVAMTR+++KL LVG ++ G +
Sbjct: 881 VTRPTAAKLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARRWCGPAGT 940
Query: 913 N--HLPVADREHYLTFQDWLLAIEAAY--------------------AADELHFKTSFIT 950
LP T DWL+A A + AAD ++ F
Sbjct: 941 AGWALPDGFLAGAGTCLDWLMAALARHRDGAAIRELAACAEEPPAEVAADRSRWRVFF-- 998
Query: 951 DEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRA---LDMLEAVEKLNQHYKAAIHLPT 1007
D G AE A + L R+ + + A M++A + + A + P
Sbjct: 999 -----SDSRGR-SAEMAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRPA 1052
Query: 1008 VRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFEL----PQFSKKAKQDPTA-LGSSVHE 1062
+++K+ ++ + E Q F L P F ++ + A G ++H
Sbjct: 1053 KAAVTELKRRFDQLAAGE----EQYGEGHFESFRLTAGRPLFMQEKRGLTAAEAGEALHL 1108
Query: 1063 LMQRLHLSEQVSLEDILTALAELSVEE----NVKKAIQVDKILHFFQTSQLGKLIQANAD 1118
+MQ L L+ + + + + + ++ E A+ +KI FF LG+ + A
Sbjct: 1109 VMQHLDLTGSLDITAVRSQIEDMVWRELLTPEQAAAVPAEKIAAFF-AGPLGRRLLAGF- 1166
Query: 1119 KVYREAPFAM-LQAD-------PASGEDYVVRGIIDGYILFDNRIVLFDYKTDK--FTNS 1168
+V RE PF M +QA P GE +V+G+ID + + +L DYKT K
Sbjct: 1167 QVLRELPFTMAVQAAEIYPELVPYPGEAVLVQGVIDCLVDEGDGYLLLDYKTGKRPLGRP 1226
Query: 1169 QAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
+ RY GQ+ +YA+A+ + + YL L
Sbjct: 1227 EEAARRYCGQLNIYARAVESILGRKVKEKYLYLF 1260
>gi|114843773|ref|ZP_01454234.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus X514]
gi|114806222|gb|EAU58002.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus X514]
Length = 1233
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 368/1284 (28%), Positives = 633/1284 (49%), Gaps = 170/1284 (13%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI T G+N+LV+A+AGSGKT V++ERI++ I V ID+L + TFT A
Sbjct: 4 KWTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ + + + + + + L+ QL L A I T+ +F ++V + L +
Sbjct: 64 ASEMRERIAEAL---IAILDQNPEDKRLANQLTLLNKATITTIHSFCLEVVRNNFFLLDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQ-AELFTKLVRNFAGNRKDSSNFRQII 201
PNFRI D +E LL+ + ++LF + Y D+ E F LV ++ G KD + + I+
Sbjct: 121 DPNFRI-GDDTETLLLQLEASEELFEEMYAKEDKDKEGFLTLVESYGGT-KDDQDLQDIL 178
Query: 202 YKIYDFSQATDNPQRWLLE--NFLKGANTYK-DFSAIPEQ-------EVKDFLNTLQETA 251
++Y F ++ P++WL + N + + +K + S E E+ LNT+
Sbjct: 179 LRLYGFVRSLPWPEKWLKDVINTFRVEDNFKFETSKWAEVILDSLKVEISGILNTMLVAV 238
Query: 252 LALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIAT 311
L++ LE Y A+QR IEQL + D + N I
Sbjct: 239 DKLKNEAGLEGYFH---------AFQREAYEIEQLLQY----------DNWNEFKNHIQA 279
Query: 312 L----IPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQS----------LPLLQ 357
+ +P+ VK V ++ +++ + D P+++
Sbjct: 280 IEFERLPNAGKDANKNVKEEV-SNIRKKVKDKIKEIKEKFFSDSVEEIKDEIKALYPIME 338
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHE 409
L L F K+Y + K ++ +F+DI HFA+QIL E D + Y +K+ E
Sbjct: 339 ALADLILLFDKKYKEKKREKGIIDFNDIEHFALQILTEIDEEGDVNPSEVALHYREKFEE 398
Query: 410 VMVDEYQDNNHTQERMLELLS--NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EH 466
+ VDEYQD+N QE +L +++ N NRFMVGD+KQSIYRFRQA+P IF +K+ + +
Sbjct: 399 IFVDEYQDSNLIQEEILSIIARENPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYSLDT 458
Query: 467 PEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN 526
E + ILL +NFRS+ EV++A N +F +M + +GE+ Y + +L G+ + IP +
Sbjct: 459 GEKNQKILLYKNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYE-IPPEDS 517
Query: 527 ET------------------QVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLH 568
T + + ++++ + ED + I + E ++VA+ I +L
Sbjct: 518 VTGGAVELHLIEKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQV-EARVVAERIKQLF 576
Query: 569 NE------------EKVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGEQNYLKSV 615
++ V + DI +L+ + R + L+ GIP D G Y +
Sbjct: 577 SQNFMVYDKNIKSYRAVDYRDIVVLLRATDRWAPVFLEELTQAGIPAFADTG-TGYFDTT 635
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
E+ ++ L+ IDNP+ D L+A+LRSP+F+F E++L L L+++ ++ +YE ++ A
Sbjct: 636 EIKTIISLLQVIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDM----EKTIYEAIKKA 691
Query: 676 RNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPK 735
+ + L K F +T W+E ++ + + +W +Y D YY YV ++P+
Sbjct: 692 SQRE--------DELGEKAKNFLDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQ 743
Query: 736 SEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMT 794
QRQANL L RA +E+T FKGL FI I+++ + D+ + V + V +M+
Sbjct: 744 GVQRQANLRILFERAKQYEETSFKGLFNFINFINRLKVSSGDMGSAKIVGENEKVVRIMS 803
Query: 795 IHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKV 854
IHKSKGLEF V + + K+F+ +D+ ++ G+G +++ D + ++
Sbjct: 804 IHKSKGLEFPVVIVAGLGKQFNTKDLYQKILYHHFLGLGPEFV-DFRR----------RI 852
Query: 855 SMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG-----KGSQEKLGDQYDGK 909
S ++ + K +++L LSE+MR+LYVA+TR+++KL LVG K + K + +
Sbjct: 853 SYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRAKEKLILVGSARDIKKNVRKWANAAILQ 912
Query: 910 SENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYD 969
+ + + + + Y+ DW+ A A +L F E+ E +
Sbjct: 913 EKVSEYDILNGKSYM---DWIGA--AVIRHKDLEPLREFAGVSLSEEEDASKWEVKLWNK 967
Query: 970 ADNLKDNRQSDDIT-----RALDM--------LEAVEKLN--QHYKAAIHLPTVRTPSQI 1014
D L + ++D + R+LD+ E +LN Y+ A +LP + +++
Sbjct: 968 KDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERRLNYVYPYEKACYLPAKLSVTEV 1027
Query: 1015 KKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTA-LGSSVHELMQRLHLSEQV 1073
K+ ++ E V+ TS + + P F +K K A G ++H +MQ+L L + +
Sbjct: 1028 KR----ILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAEKGIAMHLVMQKLDLDKDL 1083
Query: 1074 SLEDILTALAELS----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML 1129
SLE I + ++ + E K + + KI FF+TS +++ ++ V RE PF +
Sbjct: 1084 SLEGIKEQIKDMVDREILTEEQAKEVNIHKIEGFFKTSLGERML--SSKNVKREVPFHIK 1141
Query: 1130 QA---------DPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQA--IKERYRGQ 1178
+ + E V+GIID + ++ +VL DYKTD + IKERY+ Q
Sbjct: 1142 LSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKTDYVQEGKVEEIKERYKVQ 1201
Query: 1179 MTLYAQALSQSYNIQQVDSYLILL 1202
+ LY++AL + + Y+ L
Sbjct: 1202 IELYSKALENITGKKVKEKYIYLF 1225
>gi|68054574|ref|ZP_00538731.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
gi|68008980|gb|EAM88200.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
Length = 1183
Score = 375 bits (962), Expect = e-101, Method: Composition-based stats.
Identities = 362/1239 (29%), Positives = 589/1239 (47%), Gaps = 153/1239 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T EQ AI G +ILVSA+AGSGKT V++ER+ +++ +T D++ ++TFT AA
Sbjct: 6 TDEQQRAIDARGGHILVSAAAGSGKTAVLVERLTQRVINQEDPLTADRILVATFTNAAAK 65
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + I ++++ D +L +Q + A I T+ +F ++ + Y +G+ P
Sbjct: 66 EMKTRVIEAIEAKIKVAPDDL---YLKKQRQMMNRAQITTIHSFCLSILRENYYRIGLDP 122
Query: 146 NFRILQDKSEQDLLKNDV---------------FDDLFTDYRTGDQAELFTKLVRN---F 187
FRI ++ +E LL++DV F +L Y + + L+ N F
Sbjct: 123 AFRIAEE-AELLLLQDDVLEEVFESFYASADPAFYELIDSYTSDRDDQAMLTLISNLYRF 181
Query: 188 AGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTL 247
+ + D F + YD Q D + LL + + + V +N
Sbjct: 182 SRSLPDPEAFYDHLIAQYD--QPIDPDESSLLTRLFE----------LEWERVGPVINRY 229
Query: 248 QETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQD-WV---LHFDSLYGRDGLG 303
E + LR E + TP ++ I QD W L F ++ G
Sbjct: 230 MELSYRLRQSGYDEMADLLVQDVTP-------VRRINPEQDRWTTVALAFQAVEFGRWKG 282
Query: 304 KLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFT 363
++ + V+ +K R L G+ +LE + L ++++ +
Sbjct: 283 IRGDEEMKKFQTERTRLVSDLKK--MRDLFVEKDGVDYLEDL----RSQLGHVEMIVTLV 336
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEVMVDEYQDNNH 420
FS YL+AK Q +FSD+ HFA+ ILEEN + +L +++ EV+VDEYQD N
Sbjct: 337 RSFSAAYLEAKQQRGIVDFSDLEHFALAILEENGEPTDVARLLQERFIEVLVDEYQDTNE 396
Query: 421 TQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLK 476
QER+L L+S N FMVGD+KQSIY+FR A+P +F KFK FQ+ E G I L
Sbjct: 397 VQERILRLVSKSDEATGNLFMVGDVKQSIYKFRHAEPGLFLNKFKRFQQ-TEVGTRIDLT 455
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK 536
+NFRS+ EVLD TN +F +MDEAVGEI YD+ L G+ + Q + ++L+ D
Sbjct: 456 KNFRSRLEVLDGTNHIFRQVMDEAVGEIDYDEAAYLRLGNLGY-VDSTQVDPELLLVDQT 514
Query: 537 DQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE--------------KVQFEDITLLV 582
D ++L E +++A II + N+E K ++ DI +LV
Sbjct: 515 DTNKEEL------------EAQVIATRIIEMVNDENPYLVFDAKQKRFRKCEYRDIVILV 562
Query: 583 SSR-TRNDGILQTFDDYGIPLVTD--GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVAL 639
SR R ++ F+ Y +P+ D GG Y ++ E+ +M+ L++IDNPL D ++
Sbjct: 563 RSRGKRVQALVDVFEQYELPVYADTTGG---YFQATEIQIMMSLLKTIDNPLQDIPFASV 619
Query: 640 LRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFE 699
LRSP+F + DL R+ ++ + YE Q L ++D
Sbjct: 620 LRSPIFGLTDRDLGRIRAKS----KDGSFYEAAILVAKEQ--------TPLGLRVDEALN 667
Query: 700 TFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFK 759
WR + SL LI +++ Y++YVG L RQANL AL RA +E +G++
Sbjct: 668 QLHHWRTEARGKSLASLIRSLFDQTGYFEYVGCLNGGRSRQANLNALYERAHQYEASGYR 727
Query: 760 GLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ 818
GL RF+R+I +++E D ++ + ++ V +MTIH+SKGLEF + + K+F+ Q
Sbjct: 728 GLYRFLRLIHRLVERGEDFSEARSLGEDEDVVRIMTIHQSKGLEFPVTIVSQLGKQFNKQ 787
Query: 819 DMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMR 878
D + L + G+ + I P ++ TL ++ +RE+ +E+MR
Sbjct: 788 DQIQAIQLHKTYGIALDAID-----------PVKRLRSGTLLKEVIRREMDREMKAEEMR 836
Query: 879 LLYVAMTRSEKKLYLVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL-AIEA 935
+LYVAMTR+++KL LVG KG +++L D + LP DR + T+ DW++ A+
Sbjct: 837 VLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDELLLPEMDRRNAKTYADWVVPAVLR 896
Query: 936 AYAADELHFKTSF--ITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVE 993
+ E + SF I +++ + + EQ L+ + D T + +EA
Sbjct: 897 NFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEHVRVLEKIDHAGDETLNIQ-IEAAF 955
Query: 994 KLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVM--QTSYQTKPKFELPQFSKKAKQ 1051
Y+ A +T +++K+ + +E E Q++Y P+F P + +
Sbjct: 956 AYQYPYQVATDTAAKQTVTELKRTEQ--LERAAFESTHRQSTYYRTPQFLGPTLTGAER- 1012
Query: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILT-ALAELSVEENVKKAIQVDKILHFFQTSQLG 1110
G+ +H MQ L+ S + E IL AE + + L F S G
Sbjct: 1013 -----GTVLHLAMQ-LYESGRSFEEQILDWEQAERISSLEAQTMREAIPELTTFLASDTG 1066
Query: 1111 KLIQAN--ADKVYREAPF------AMLQADPASGEDY-VVRGIIDGYILFDNRIVLFDYK 1161
+L + A +VYRE PF A ++D D V++GI+D I + +L DYK
Sbjct: 1067 QLFEQRLLAGEVYRELPFTYKIDSARFRSDWHGPSDQAVMQGIVDCLIRDGDTYILLDYK 1126
Query: 1162 TDKF-------TNSQAIKERYRGQMTLYAQALSQSYNIQ 1193
+D+ ++ ++ RY Q+ LY +AL +I+
Sbjct: 1127 SDQVFETTDNQNQAEVLRTRYATQLNLYQEALEAILHIR 1165
>gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM]
gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM]
Length = 1207
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 347/1276 (27%), Positives = 607/1276 (47%), Gaps = 166/1276 (13%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
T EQ +AI G +ILVSASAGSGKT V++ER++ +I+ G + +L + TFT AA E+K
Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAAEEMK 64
Query: 89 ERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFR 148
R++ +T++L +++L EQL + TA+I T+DAF +++ ++ Y++ ++P+F+
Sbjct: 65 TRIKTALTKEL--AKPGVNRKYLREQLNQVDTANISTIDAFCLEVIRRFYYSVNLNPSFK 122
Query: 149 ILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSS------------- 195
IL D+++ L+K ++ + T D+ NFAG+R +S
Sbjct: 123 ILTDETQAALIKERALREIEAESLT-DENSGIRYFYDNFAGDRDANSPRDLLLDLYNFAM 181
Query: 196 ------NFRQIIYKIYDFSQATDNPQRW-------LLENFLKGANTYKDFSAIPEQEVKD 242
++ + + KIY+ + + W LL F+ +++ P E K+
Sbjct: 182 AKPEYRSWLKNLAKIYEVNNNIVKSKLWQNQIKSYLLNTFVSLQKKIEEYLNNPTIETKE 241
Query: 243 FLNTLQETAL----------ALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLH 292
++ +L A+++ D + + + Y++ K E +Q++
Sbjct: 242 LAKVKEDFSLFTQNLDKFIDAIKNDEDYDQQRNLLRLCKFEVKYRKSAKWDEDIQEFYAE 301
Query: 293 FDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQS 352
KL ++ + I + +F + ++ + + +S
Sbjct: 302 TQ---------KLKSEAKSQI------------FDIFTAFYA-----TDEKEQTRIMQES 335
Query: 353 LPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYH 408
++ + L ++ + K EN ++SD+ A QIL + + R+ Y +K+
Sbjct: 336 QKIVSAISKAELALIDRFNELKRNENFLDYSDMEQLAYQILSADTSNSQMAREFYQNKFK 395
Query: 409 EVMVDEYQDNNHTQERMLELLSNGRNR--FMVGDIKQSIYRFRQADPQIFNQKFKDF-QE 465
E+++DEYQD N QER+++ + N FMVGD+KQSIY FRQA+P +F +K+ F E
Sbjct: 396 EILIDEYQDINALQERIIQQVKNTDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHGFASE 455
Query: 466 HPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
+H K ILL +NFRS V N +F ++ G I Y QL+ G+ P+
Sbjct: 456 ENKHEKRILLSDNFRSTEPVTKTVNQLFKSILSSDFGGIDYSKEGQLIFGAKYYPDALPK 515
Query: 526 NETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE------------KV 573
++ KD +++D+N I EV++V I +L E +
Sbjct: 516 ASEIIVHKKQKD-------IDNDNNGIDFSEVEMVLARIKQLKKEHFQVLDSTTGEVRAL 568
Query: 574 QFEDITLLVSSRTRNDGILQTFDDYGIPL-VTDGGEQNYLKSVEVMVMLDTLRSIDNPLN 632
++ DI +L S N I+Q F IPL +TD +NY ++ E+ V+++ L+ IDNP
Sbjct: 569 KYSDIAILTRSHGDNLEIMQEFAKRDIPLFITDA--ENYFQTFELTVIMNYLKIIDNPDQ 626
Query: 633 DYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSA 692
D LV +LRSP+F F E DLA++ + + Y + + I + LS
Sbjct: 627 DIPLVTVLRSPLFNFSEKDLAKIRI----NSKNSGFYSAVASYVG--------IGDELSD 674
Query: 693 KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADN 752
+ F R+F+ + + +LIW IY + + LP EQR+ NL AL RA +
Sbjct: 675 RCKNFLNKLDELRKFATTHRISELIWSIYAQTNLLEIMTGLPNGEQRRINLEALYERASS 734
Query: 753 FEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNI 811
+E GFKGL +FI I+++ +Q DLA ++ NAV LMTIH SKGLEF VF L +
Sbjct: 735 YESAGFKGLYQFINFINRMRRSQKDLAQPLLSKEAGNAVRLMTIHGSKGLEFPVVFYLGM 794
Query: 812 DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLA 871
++ ++D+ +++ + +GI +++E +D+L + +
Sbjct: 795 QHQYQLRDLKGNYVIN-PDSLGIT----LRQE---------HYRVDSLVKAIGNVTKKRQ 840
Query: 872 TLSEQMRLLYVAMTRSEKKLYLVGKGSQ--EKLGDQYDGKSENNHLPVADREHYLTFQDW 929
L E+ R+LYVA+TR+++KL LVG + +K+ D ++ L +AD+ L+ +
Sbjct: 841 LLEEEARVLYVALTRAKQKLILVGDIANLDKKVQDWSIELDQSGQLSLADK---LSVTNP 897
Query: 930 LLAIEAAYAADELHFKTSFITDEDLTE--DKMGSLEAEQAYDADNLKDNRQSDDIT---- 983
L + A A D K I D++ D+ S+ + D+DN + + D +
Sbjct: 898 LGFMGPALAFD----KHIVINMNDISNALDQSQSVLYVEYKDSDNFEFKKDEDKVVGDSK 953
Query: 984 -------RALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETE---GVEVMQTS 1033
+ + + + + + +K A + S+IKK + +ETE + T+
Sbjct: 954 NNNYTMDKLISTTKKLYQFDYPFKDASETTAYQAVSEIKKAFNDPIETELENSRLLSSTN 1013
Query: 1034 YQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAEL----SVEE 1089
+P P F + K +G++ H ++Q + S + + + EL +
Sbjct: 1014 RYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYTGDGSEKQLDYEIEELIKQKKLNP 1073
Query: 1090 NVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDY-------VVR 1142
++ ++ D+I +F S K N + + RE F+ L + +D+ +V
Sbjct: 1074 DIVPSLHKDQI-QWFVHSSFAKSFWKNPENLQREVDFSSLISAKNLFKDFSDANAKILVH 1132
Query: 1143 GIIDGYILFDNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYAQALSQSYNIQQVD 1196
G IDGY + ++ I+LFDYKTD S IKE+Y GQ+ LY QA+++ + +
Sbjct: 1133 GTIDGYFVSNDGIILFDYKTDHVNKSYLDKSINLIKEKYTGQLRLYEQAINEFGEEKVIG 1192
Query: 1197 SYLILLGGEKLEVVEI 1212
YLILL + +VVE+
Sbjct: 1193 KYLILLDAK--QVVEV 1206
>gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str. Langeland]
gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str. Langeland]
Length = 1279
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 367/1303 (28%), Positives = 616/1303 (47%), Gaps = 164/1303 (12%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI+T N+LV A AG+GKT V+++RI++KIL + ID+L + TFT A
Sbjct: 5 KWTDEQRQAIFTKNCNLLVVAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L ++ + L +QL L ++I T+ +F +++ +T+ I
Sbjct: 65 AAEMRERIGDAISKGL---DEDPESKVLRKQLTLLNKSNIMTIHSFCLQVIKNNFHTMEI 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D++E L+K + D+LF D + E F LV ++A +RKD+ ++++ +
Sbjct: 122 DPNFRIC-DETEGILMKQEAIDELF-DELYEIENEDFINLVESYA-SRKDT-RLQEVVLE 177
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD-LED 262
++ F+++ P WLL N +G N ++F+ E D + +++ + L + L+
Sbjct: 178 LHRFAKSAPFPYTWLL-NMAEGFNVGENFN-FEETLWADMI--MEDMKVLLHGFKNMLQQ 233
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVA 322
V Y KM + +L S G +A D L N
Sbjct: 234 SIDVILNSEGIDYYYEPFKMDLSFINSLLEKSSFKEFRG-EIIAYDFPKLPLKRNKDADK 292
Query: 323 GVKYPVFRSLHSRLRGLKHLETIF-KYQDQSL--------PLLQVLQSFTLDFSKQYLQA 373
K V + + + L+ I Y+++ + P ++ L + + F K+Y
Sbjct: 293 EAKERVKKLRDKVKKKIVELKNILDSYENEFIKKEFIFLYPSMKALSNLVILFDKKYEAK 352
Query: 374 KMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHEVMVDEYQDNNHTQERM 425
K + + +F+DI H + IL + ++ I Y K+ EV++DEYQD+N QE +
Sbjct: 353 KRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNYRKKFAEVLIDEYQDSNLVQEVI 412
Query: 426 LELLS---------NGR--------------------NRFMVGDIKQSIYRFRQADPQIF 456
+ ++S NG+ NRFMVGD+KQSIYRFRQA P+IF
Sbjct: 413 MSMVSRVKGYWSFYNGQLIFNEEEINLEEPQIGLDIPNRFMVGDVKQSIYRFRQAKPEIF 472
Query: 457 NQKFKDFQEHPEH-GKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAG 515
K+ ++ E + + + L +NFRS+ EV++ N +F +M + +GE+ Y + L G
Sbjct: 473 LDKYNEYNEEEDRKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYTEEEALKVG 532
Query: 516 SSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQ------ISLGEVKLVAKEIIRL-- 567
+S + ++ + D K + ++++ E + ++ I L E +LVAK+I +L
Sbjct: 533 ASYGE-EVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQL-EGRLVAKKIQKLVG 590
Query: 568 HNEE--------------KVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGEQNYL 612
+N E +Q+ DI +L+ + + + ++ GIP+ D Y
Sbjct: 591 NNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPVFVEELAKEGIPVFADT-NSGYF 649
Query: 613 KSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKM 672
+ E+ M+ L+ IDNPL D L+++LRSP+ +F +D+L + + N YE M
Sbjct: 650 DTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMIN----KNITFYECM 705
Query: 673 E-------------------NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
E N + ++ + E L K+ +F E WRE S+ +
Sbjct: 706 EIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSIHIDI 765
Query: 714 YDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILE 773
+ IW +Y + YY Y G+L EQRQANL L RA + KT +KGL FI I+K+
Sbjct: 766 DEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFINKLKF 825
Query: 774 NQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
+ D+ ++ +N V +M+IHKSKGLEF V + K F++ D+ ++ R G
Sbjct: 826 SSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGY 885
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
G Y+ + +++ +L + K ++RL TLSE+MR+LYVA+TR+ +KL
Sbjct: 886 GPDYVDTER-----------RIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLI 934
Query: 893 LVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFIT 950
+ G + + D + + N +P T+ DW+ + D + F+
Sbjct: 935 ITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKH-KDAVSFREELKM 993
Query: 951 DEDLTE--DKMGSLEAEQAYDADNLKDNRQ------SDDITRALDMLEAVEKLNQHYKA- 1001
+L+ D + E + LK+ + S+ I L LE + YK
Sbjct: 994 TSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRL 1053
Query: 1002 --------AIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDP 1053
A +PT + S +KK + + E+ + KP F +K K P
Sbjct: 1054 SFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMF----MEEKKKISP 1109
Query: 1054 TALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENV----KKAIQVDKILHFFQTSQL 1109
+ G+ +H MQ L L + S EDI + L E + K I KIL F + +L
Sbjct: 1110 SERGTIIHLFMQHLDLKKAESEEDIKEQINRLIEREFITYEQSKVISPYKILKFCR-GEL 1168
Query: 1110 GKLIQANADKVYREAPFAM----------LQADPASGEDYVVRGIIDGYILFDNRIVLFD 1159
GK I N++ V +E PF++ L + E +++G+ID Y ++ +VL D
Sbjct: 1169 GKRI-LNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLD 1227
Query: 1160 YKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
YKTD + + IK RY Q+ Y +AL++ D YL L
Sbjct: 1228 YKTDYVNDIEEIKNRYEIQIKYYEEALNRITGKNVKDKYLYLF 1270
>gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
Length = 1233
Score = 369 bits (948), Expect = e-100, Method: Composition-based stats.
Identities = 363/1266 (28%), Positives = 596/1266 (47%), Gaps = 145/1266 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T EQ + I NILVSA+AGSGKT V+++RI+ KI+ R V ID+L I TFT AAG
Sbjct: 6 TEEQQKVISLRDRNILVSAAAGSGKTAVLVQRILSKIMDTERPVDIDRLLIMTFTRAAAG 65
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KER+ I + L D + L Q + A I T+D F ++ Y + + + P
Sbjct: 66 EMKERISAAIDQILY---DNPDNEHLQRQASLIHNAQITTIDGFCAYIIRNYFHMIDLDP 122
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
+R ++ E LL+ DV ++ + + E F LV +A + D R +IYK+Y
Sbjct: 123 GYRTAEE-GELKLLREDVMKEVL-EAAYARKGEKFLSLVECYATGKTDDE-IRDMIYKLY 179
Query: 206 DFSQATDNPQRWLLENF-LKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDY- 263
D S + P+ W+ E + ++ +D P +K + E+ + +R++
Sbjct: 180 DASMSHPFPEEWIEECLEVYQVDSLEDLHDTPW--MKLIWDAADESIVQVRELLSRAAAI 237
Query: 264 -KQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKL-ANDIATLIPSGNDVTV 321
++ + AA + ++ + V D +G +L N + + D++V
Sbjct: 238 CREESGPYFYEAALDDDILLLRAAETAVKERDY----NGFSELLKNHKYARLSTKKDLSV 293
Query: 322 AGVKYPVFRSLHSRLRGL----------KHLETIFKYQDQSLPLLQVLQSFTLDFSKQYL 371
K + L +GL + E I +Y ++ L TL + +
Sbjct: 294 DEEKKIQVKDLRDSAKGLWNELTEKYFNQTEEMILEYLQYCRRPMEGLAEVTLQYKDAFA 353
Query: 372 QAKMQENAFEFSDIAHFAIQIL--EENDAIRQLYID-----KYHEVMVDEYQDNNHTQER 424
K ++N +F+D+ HFA+ IL +E D I +Y EVMVDEYQD+N QE
Sbjct: 354 DRKREQNILDFTDMEHFALDILMHKEGDTITPSAAAWELSARYDEVMVDEYQDSNLVQEM 413
Query: 425 MLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
+ L++ +N FMVGD+KQSIYRFR A P++F +K+ + + I L +NFR
Sbjct: 414 ITNLVAGWADKRKNIFMVGDVKQSIYRFRLARPELFMEKYHSYSLEDSEEQRIDLHKNFR 473
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSS-AQKIPYPQNETQVLIYDTKDQQ 539
S+ VL + N +F +M E +G I Y+D + L G+S ++ + ET+VL+ + ++
Sbjct: 474 SRGTVLSSVNYLFRQIMGEDLGGITYEDENALYTGASFPERADGKEPETEVLLIEKDGEE 533
Query: 540 NQDLAVEDDSNQ-ISLGEVKLVAKEIIRLHNEEKVQFED------------ITLLVSSRT 586
+E+ NQ + E +A+ I +L E+V +D + LL +S
Sbjct: 534 -----LEEQGNQTVQELEALAIAQRIQKLVGIEEVLDKDSGTYRKAGYGDIVILLRTSAG 588
Query: 587 RNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFA 646
+ Q GIP+ T Y + EV+ +L+ LR DNP+ D L +L S +
Sbjct: 589 WAEPFSQVLASKGIPVYT-ASRTGYFAAQEVVTLLNYLRICDNPMQDIPLTGVLHSAIGG 647
Query: 647 FDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE 706
+ +LA + PD LYE + R + L K+ F E R+
Sbjct: 648 CNTQELA-IIRSKCPDGM---LYESLLAFRERKTDDRDEEELVLREKISHFIELLEEMRD 703
Query: 707 FSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIR 766
++ +++LI I Y DYV +P QR ANL+ L +A +EKT ++GL F+R
Sbjct: 704 LAVYTPVHELIQYILRKTGYGDYVRVIPGGAQRGANLHMLVEKAMEYEKTSYRGLFNFVR 763
Query: 767 MIDKILENQNDLADVEVALPKN-AVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
I+K+ + + D +V +A N AV +MTIHKSKGLEF VF + K+F+ QD+ S +
Sbjct: 764 YIEKLQKYEVDFGEVNLADAGNGAVQIMTIHKSKGLEFPIVFAAGMGKQFNFQDINSRFL 823
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
+ G G+ I LP ++ + T+ Q+ +R+L+ +L E++R+LYVA+T
Sbjct: 824 IHPDMGFGVDVI-----------LPEKRLILSTVHKQIIRRQLKRESLGEELRVLYVALT 872
Query: 886 RSEKKLYLVGKGSQEKLGDQYDGKS-----ENNHLPVADREHYLTFQDWLLAIEAAYAA- 939
R+++KL + G+ KL D S LP+ R + ++L A + A
Sbjct: 873 RAKEKLIIT--GTIAKLADVLQAVSWQMGRRETLLPIGTRGEARNYWSFILPALARHEAM 930
Query: 940 -------------------DELHFKTSFITDEDLTEDK-MGSLEAE------QAYDADNL 973
+ FK IT +L + + +G +++ + +D+ +
Sbjct: 931 LPLFREYGIADRQIQVCEMEHAEFKVQKITAAELVQGEILGQTDSQMQEKLLKEWDSRKI 990
Query: 974 KDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTS 1033
D + +T E L LP + S++KK G E + S
Sbjct: 991 YDEEIHEILTERFAFRYPFEYLKD-------LPVKVSVSELKK-----RSWRGEEEKEES 1038
Query: 1034 YQTKPKFE--LPQFSKKAKQD--PTALGSSVHELMQRLHLSEQVSLEDI------LTALA 1083
+P + +P F K++ A G++ H LM+ L + + I LT
Sbjct: 1039 LFYEPDIQEIIPTFVSGEKEEYRGAARGTAYHRLMECLDYTHAEDVHQIQKQIRMLTDSR 1098
Query: 1084 ELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADK--VYREAPFA----MLQADPA-SG 1136
++S EE + I++ IL F S+LG+ ++ A++ +YRE PF M Q + A +G
Sbjct: 1099 KMSPEE--AQCIRIADILAFVD-SKLGQRMKTAAEQNALYREQPFVIAQKMNQIEAAWNG 1155
Query: 1137 EDYV-VRGIIDGYILFDNRIVLFDYKTDKFT--NSQAIKERYRGQMTLYAQALSQSYNIQ 1193
E+ V V+GIID Y + D+ IVL DYKTDK + Q + + Y Q+ YA AL + +
Sbjct: 1156 EETVLVQGIIDAYFIEDDEIVLVDYKTDKVSPGGEQDLIDLYHIQLEDYAAALERMLQKK 1215
Query: 1194 QVDSYL 1199
++Y+
Sbjct: 1216 VKETYI 1221
>gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
Length = 1194
Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats.
Identities = 346/1221 (28%), Positives = 597/1221 (48%), Gaps = 115/1221 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q + I NILVSA+AGSGKT V++ERI+ ++L + +D+L I TFT AA
Sbjct: 6 TEDQKKVIELRNRNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFTEAAAA 65
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KER+ I L DT L Q + +A I T+ +F ++ ++ + + + P
Sbjct: 66 EMKERIRDAIENALE---DTPGNVHLQRQATLIHSARITTIHSFCLSVIREHFHAINLDP 122
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
FRI ++ E LL+ DV +++ Y G +A F + F+ R D ++I ++
Sbjct: 123 GFRIAEE-GELKLLRQDVLEEMLESCYDEGTEA--FLEFAEKFSTGRSDR-QLEEVILQL 178
Query: 205 YDFSQATDNPQRWL---LENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLE 261
Y+++ + P++WL ++N+ + D + + ++ LQ + L + L
Sbjct: 179 YEYAGSYPQPEKWLNACVDNYQVENEHFSD-AGFVQILIESIRQNLQGARILLNEA--LH 235
Query: 262 DYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA-TLIPSGNDVT 320
++ A + L MIE ++ F++ YG+ N IA + + D T
Sbjct: 236 ICEESDGPYLYAEALEADLMMIETMEK-AETFEAFYGK------INQIAWKRLSAKKDET 288
Query: 321 VAGVKYPVFRSLHSRLRGL-KHL-ETIFKYQDQSLP--------LLQVLQSFTLDFSKQY 370
+ K + L + + + K L ET F + L ++ L F++ +
Sbjct: 289 IDPEKKEAVKMLREKAKKMVKDLQETCFYETPEELAEDLRNTGSTMEELVFLVTTFARLF 348
Query: 371 LQAKMQENAFEFSDIAHFAIQIL-EEND------AIRQLYIDKYHEVMVDEYQDNNHTQE 423
+ K N +F D+ FA+QIL EE D A+ + Y +++ EVM+DEYQD+N QE
Sbjct: 349 AEKKRSRNVIDFQDMEQFALQILTEEKDGSLVPSAVAREYQEQFEEVMIDEYQDSNLIQE 408
Query: 424 RMLELLSN----GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENF 479
+L +S N FMVGD+KQSIYRFR + P++F +K+ + + + I L NF
Sbjct: 409 AILTSVSTVSRGSYNVFMVGDVKQSIYRFRLSRPELFMEKYDTYSQADSEKQRIDLDRNF 468
Query: 480 RSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS----SAQKIPYPQNETQVLIYDT 535
RS+ EVLDATN VF +M ++VG + YD L G+ S ++ N ++L+ D
Sbjct: 469 RSRKEVLDATNYVFEQIMHKSVGGVEYDARAALYPGADYPKSREQNGVSANRAELLLVDA 528
Query: 536 KDQQNQDLAVEDDSNQIS-LGEVKLVAKEIIRLHNEE--KVQFEDITLLVSS-RTRNDGI 591
++ + +D A ++ ++ ++ L+ +++ +E VQ++DI +L S + D
Sbjct: 529 QELEEEDNARRLEARAVADRIKLLLLQGQVVDKKTKEYRPVQYKDIVILTRSIKGWADVF 588
Query: 592 LQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDD 651
Q + GI G + Y ++ EV V+LD L+ +DN D L A+L SP D +
Sbjct: 589 AQVLAEEGISAHV-GSREGYFETYEVSVLLDYLQILDNERQDLPLAAVLTSPFAGLDARE 647
Query: 652 LARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLN 711
LA++ P+ YE + + ++ + I L KL F +R+
Sbjct: 648 LAKIR-STYPELF---FYEAVHAYASDDEKEKEPI---LQQKLKNFLCRVSEFRDMLPYT 700
Query: 712 SLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKI 771
+++DL+W+I Y + ++P QR AN+ L +A +E T +KGL F+R I+++
Sbjct: 701 AMHDLLWEIIEKTGYGMCISAMPGGAQRMANVQMLVAKAAAYEGTSYKGLFNFVRYIEQL 760
Query: 772 LENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQN 830
+ D + +A + + V +M+IHKSKGLEF V + + K F+ QD+ +++ +
Sbjct: 761 KKYNVDYGEANLADEQADTVRIMSIHKSKGLEFPIVIVAGMGKLFNTQDVKGSIVIHPEL 820
Query: 831 GVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKK 890
GVG+ I D+K+ + TL ++ ++++ + L E+MR+LYVAMTR+++K
Sbjct: 821 GVGMDVI-DLKK----------RTKAPTLLKKVIQKQVAVENLGEEMRVLYVAMTRAKEK 869
Query: 891 LYLVG--KGSQEKLGDQYDGKSENNHLP--VADREHYLTFQDWLLAIEAAYAADELHFKT 946
L L G K ++ KL + + + LP V YL DWLL A + E
Sbjct: 870 LILTGVCKDARTKL-ETLSTREKTAFLPYEVLSANSYL---DWLL---PAASPAESSIGI 922
Query: 947 SFITDEDLTEDKMGSLEAEQAYDA-----DNLKDNRQSDDITRALDMLEAVEKLNQHYKA 1001
+ + D +G+ + E A++A N+ +N ++ I A E +L+ Y
Sbjct: 923 TVV-------DSLGAAQMEGAWEAADELTRNVLENWDTNQIHDAGYREELKRQLDFAYPF 975
Query: 1002 A--IHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTAL-GS 1058
A T S++KK ME E EV+ + P +P+F + A+ G+
Sbjct: 976 AEEQRFQMKFTVSELKK--RAYMEEEAGEVLYQEPEAVPL--VPRFLGAEEAASGAVRGT 1031
Query: 1059 SVHELMQRLHLSEQVSLEDILTALAELSVE----ENVKKAIQVDKILHFFQTSQLGKLIQ 1114
+ H+ ++ L ++ + E + L L E + +A++ + L F Q ++ Q
Sbjct: 1032 AYHKFLELLDFEKEYTRESLEEHLKHLQTEGRISPEIAEAVKTEDFLKFLQCESGKRMHQ 1091
Query: 1115 ANADK-VYREAPFAM------LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTN 1167
A K +Y+E PF + + D +V+GIID Y ++ +V+ DYKTD+
Sbjct: 1092 AAKKKQLYKEQPFVLGVDSGEIYPDTECRAQLLVQGIIDVYFEEEDGLVVLDYKTDRVRT 1151
Query: 1168 SQAIKERYRGQMTLYAQALSQ 1188
+ + RY+ Q+T YA+ALSQ
Sbjct: 1152 ADELVRRYQSQLTYYARALSQ 1172
>gi|92089399|ref|ZP_01274344.1| UvrD/REP helicase [Lactobacillus reuteri 100-23]
gi|91803849|gb|EAS88703.1| UvrD/REP helicase [Lactobacillus reuteri 100-23]
Length = 1392
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 303/982 (30%), Positives = 487/982 (49%), Gaps = 126/982 (12%)
Query: 328 VFRSLHSRLRGLKH-----LETIFKYQDQSL--------PLLQVLQSFTLDFSKQYLQAK 374
V++SL S G+K ++ F Y++ LL+ L + T++F ++Y Q K
Sbjct: 421 VYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTHAQELLRELSAVTINFRRRYQQTK 480
Query: 375 MQENAFEFSDIAHFAIQILEEND------AIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+ + EFSD+ H+A IL D + + + Y E+M+DEYQD N QE +L
Sbjct: 481 LNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQNHYQEIMIDEYQDTNRLQESILMK 540
Query: 429 LSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L++ +N FMVGD+KQSIYRFR+ADP +F K++++++ + G+ I+L ENFRS + V
Sbjct: 541 LTSPERKNLFMVGDVKQSIYRFREADPTLFLGKYQNYRQGND-GEAIVLGENFRSMTNVT 599
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE------TQVLIYDTK--DQ 538
TN +F LMD VGEI YD+ L ++ Y +N+ T+VL+YD D
Sbjct: 600 SFTNILFEQLMDREVGEIDYDEDAHLKYAATY----YEENQANKVQPTEVLLYDANALDP 655
Query: 539 QNQDLAVEDDS-----NQISLGEVKLVAKEIIRLHNEE----KVQFEDITLLVSSRTRND 589
+ +D+ EDD I + ++V + + H E+ +Q+ DI LL ++ N+
Sbjct: 656 EKEDIEHEDDKLAGEFRMIGMRIKQMVENQELIFHPEDGQMHPIQYGDIVLLERTKAINN 715
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+++ F+ IPL E +Y ++ EV VM+ L+ IDNP D L A+LRSP+
Sbjct: 716 SLMEEFNKLNIPLTVHDVE-SYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTN 774
Query: 650 DDLARLALQNLPDQHKQNLYEKMEN-ARNGQGQQVQLITEALSA---KLDAFFETFLSWR 705
+LA + LQN + L M N R Q L +E +SA K D F +R
Sbjct: 775 QELAFIRLQNRSVDYYAALQSFMGNYQRKALRHQSLLTSEQVSALYEKADHFLGLLRVFR 834
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
+ + +L DLIW+IY+ Y DYVG++P QRQANL+AL RA ++E++ FKGL +FI
Sbjct: 835 QTAQQQTLVDLIWQIYDQTGYLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFI 894
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
R I+K+ E+ DL L N V +MTIH SKGL+F VF+++ F+ +
Sbjct: 895 RFIEKMQEHDKDLGVAPTQLTANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAV 954
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
+ GVGI+Y+ D +V DT Q E++ +E +R+LYVA+T
Sbjct: 955 VDAAAGVGIRYMDDQ------------RVIYDTPQRQAVIEEIQRGERAEDLRVLYVALT 1002
Query: 886 RSEKKLYLVGKGSQEKLGDQYDG---------KSENNHLPVADREHYLTFQDWL---LAI 933
R+E++L + G ++E G +S+N + R +F DW+ LA
Sbjct: 1003 RAEQRLVITGSFNEEMRTQSLAGSWQRWQKAYQSKNLLIGPQPRITANSFMDWVGLALAR 1062
Query: 934 EAAYAADELHFKTSFITDEDLTEDKMGSLEAE-----QAYDADNLKD-----------NR 977
+ A +L + + L + K+ L A+ + Y A ++ D N
Sbjct: 1063 YPEFNAQQLSRGNVTLEESTLADTKITGLAADPHFIAKTYTALDVSDGLAKIGQNASANV 1122
Query: 978 QSDDITRALDM----LEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTS 1033
+ T A D +E + + + A ++ + +K+ +E +T +
Sbjct: 1123 TEKNNTVATDASEQKIEQILRYRYPHLVATKTTAYQSVTDVKRVFEDP-DTRDMARWDYD 1181
Query: 1034 YQTKPK---------FELPQFSKKAKQDPTA--LGSSVHELMQRLHLSE-----QVSLED 1077
Q K K F++P F ++ +P A +G++ H + Q+L L E + ++
Sbjct: 1182 QQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATEIGTATHLVFQKLPLDEGLINVEFVDQE 1241
Query: 1078 ILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQ------- 1130
I + E + V I + I+ F+QT+ K+++ AD +RE PF+M+
Sbjct: 1242 IQKLVGEKLINPVVAARINREGIVAFYQTAVGQKILKHPAD-YHREVPFSMIMNGHELFK 1300
Query: 1131 -ADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYA 1183
+ + E ++ GIIDGY+ D I+L DYKTD IK+RYRGQ+ LY
Sbjct: 1301 GVNVSDDERILIHGIIDGYLRTDEGIILVDYKTDHLNKDYRNFDLARIKDRYRGQLELYK 1360
Query: 1184 QALS--QSYNIQQVDSYLILLG 1203
+AL+ + + Q+ YL+ LG
Sbjct: 1361 EALNLMEGIPVVQMGLYLLELG 1382
Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/198 (35%), Positives = 121/198 (61%), Gaps = 7/198 (3%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TP Q +AI G NILVSASAGSGKT V++ R ++ I G +ID++ + TFT AA
Sbjct: 5 KPTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKN 64
Query: 87 LKERLEKKITEQLRLT-NDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
+++++ + + ++ + N L+ +S Q+ L ADI T+ AF KL+ +Y Y + + P
Sbjct: 65 MRDKIRAALQKIVQDSANPKDLRDRMSNQINRLAAADISTIHAFCLKLIKRYYYLIDLDP 124
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQA----ELFTKLVRNFAGNRKDSSNFRQI 200
FR+L D++E+ LL+ DV+ ++ + Y+ ++ F++LV NF+ +R D +
Sbjct: 125 QFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSELVLNFSSDR-DDQGLDDL 183
Query: 201 IYKIYDFSQATDNPQRWL 218
I ++Y+ + A +P++WL
Sbjct: 184 ILRLYEIANAQPDPEKWL 201
>gi|148543293|ref|YP_001270663.1| Recombination helicase AddA [Lactobacillus reuteri F275]
gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri F275]
Length = 1392
Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats.
Identities = 300/982 (30%), Positives = 483/982 (49%), Gaps = 126/982 (12%)
Query: 328 VFRSLHSRLRGLKH-----LETIFKYQDQSL--------PLLQVLQSFTLDFSKQYLQAK 374
V++SL S G+K ++ F Y++ LL+ L + T++F ++Y Q K
Sbjct: 421 VYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTHAQELLRELSAVTINFRRRYQQTK 480
Query: 375 MQENAFEFSDIAHFAIQILEEND------AIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+ + EFSD+ H+A IL D + + + Y E+M+DEYQD N QE +L
Sbjct: 481 LNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQNHYQEIMIDEYQDTNRLQESILMK 540
Query: 429 LSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L++ +N FMVGD+KQSIYRFR+ADP +F K++++++ + G+ I+L ENFRS + V
Sbjct: 541 LTSPERKNLFMVGDVKQSIYRFREADPTLFLGKYQNYRQGSD-GEAIVLGENFRSMTNVT 599
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE------TQVLIYDTK--DQ 538
TN +F LMD VGEI YD+ L ++ Y +N+ T+VL+YD D
Sbjct: 600 SFTNILFEQLMDREVGEIDYDEDAHLKYAATY----YEENQDNKVHPTEVLLYDANALDP 655
Query: 539 QNQDLAVEDDS-----NQISLGEVKLVAKEIIRLHNEE----KVQFEDITLLVSSRTRND 589
+ +D+ EDD I + ++V + + H E+ +Q+ DI LL ++ N+
Sbjct: 656 EKEDVEHEDDKLAGEFRMIGMRIKQMVENQELIFHPEDGQMHPIQYGDIVLLERTKAINN 715
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+++ F+ IPL E +Y ++ EV VM+ L+ IDNP D LVA+LRSP+
Sbjct: 716 SLMEEFNKLNIPLTVHDVE-SYFQATEVRVMMSLLKIIDNPQQDIPLVAVLRSPIVGLTN 774
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITE----ALSAKLDAFFETFLSWR 705
+LA + LQN + L M N + + L+T AL K D F +R
Sbjct: 775 QELAFIRLQNRSVDYYAALQTFMSNYQRKALRHQSLLTSEQVNALYEKADHFLGLLRVFR 834
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
+ + +L DLIW+IY+ Y DYVG++P QRQANL+AL RA ++E++ FKGL +FI
Sbjct: 835 QTAQQQTLVDLIWQIYDQTGYLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFI 894
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
R I+K+ E+ DL L N V +MTIH SKGL+F VF+++ F+ +
Sbjct: 895 RFIEKMQEHDKDLGVAPTQLTANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAV 954
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
+ GVGI+Y+ D +V DT Q E++ +E +R+LYVA+T
Sbjct: 955 VDAVAGVGIRYMDDQ------------RVIYDTPQRQAVIEEIQRGERAEDLRVLYVALT 1002
Query: 886 RSEKKLYLVGKGSQEKLGDQYDG---------KSENNHLPVADREHYLTFQDWL---LAI 933
R+E++L + G ++E G +S+N + R +F DW+ LA
Sbjct: 1003 RAEQRLVITGSFNEEMRTQSLAGSWQRWQKAYQSKNLLIGPQPRITANSFMDWVGLALAR 1062
Query: 934 EAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDA----------------DNLKDNR 977
+ A +L + + L + K+ L A+ + A N N
Sbjct: 1063 YPEFNAQQLSRGNVTLEESTLADTKVTGLAADPHFTAKTYTALDVSDGLAKIGQNASANV 1122
Query: 978 QSDDITRALDM----LEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTS 1033
+ T A D +E + + + A ++ + +K+ +E +T +
Sbjct: 1123 TEKNNTVATDASEQKIEQILRYRYPHLVATKTTAYQSVTDVKRVFEDP-DTRDMARWDYD 1181
Query: 1034 YQTKPK---------FELPQFSKKAKQDPTA--LGSSVHELMQRLHLSE-----QVSLED 1077
Q K K F++P F ++ +P A +G++ H + Q+L L E + ++
Sbjct: 1182 QQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATEIGTATHLVFQKLPLDEGLINVEFVDQE 1241
Query: 1078 ILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQ------- 1130
I + E + V I + I+ F+QT+ K+++ AD +RE PF+M+
Sbjct: 1242 IQKLVGEKLINPVVAARINREGIVAFYQTAVGQKILKHPAD-YHREVPFSMIMNGHELFK 1300
Query: 1131 -ADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS------QAIKERYRGQMTLYA 1183
+ + E ++ GIIDGY+ D I+L DYK D IK+RYRGQ+ LY
Sbjct: 1301 GVNVSDDERILIHGIIDGYLRTDEGIILVDYKNDHLNKDYRDFDLARIKDRYRGQLELYK 1360
Query: 1184 QALS--QSYNIQQVDSYLILLG 1203
+AL+ + + Q+ YL+ LG
Sbjct: 1361 EALNLMEGIPVVQMGLYLLELG 1382
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 71/198 (35%), Positives = 121/198 (61%), Gaps = 7/198 (3%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K TP Q +AI G NILVSASAGSGKT V++ R ++ I G +ID++ + TFT AA
Sbjct: 5 KPTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKN 64
Query: 87 LKERLEKKITEQLRLT-NDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
+++++ + + ++ + N L+ +S Q+ L ADI T+ AF KL+ +Y Y + + P
Sbjct: 65 MRDKIRAALQKIVQDSANPKDLRDRMSNQINRLAAADISTIHAFCLKLIKRYYYLIDLDP 124
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQ----AELFTKLVRNFAGNRKDSSNFRQI 200
FR+L D++E+ LL+ DV+ ++ + YR ++ F++LV NF+ +R D +
Sbjct: 125 QFRLLTDETERLLLQEDVWHEVSEELYRNAEEKVSGKASFSELVLNFSSDR-DDQGLDDL 183
Query: 201 IYKIYDFSQATDNPQRWL 218
I ++Y+ + A +P++WL
Sbjct: 184 ILRLYEIANAQPDPEKWL 201
>gi|94992156|ref|YP_600255.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
gi|94545664|gb|ABF35711.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
Length = 357
Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats.
Identities = 192/357 (53%), Positives = 258/357 (72%)
Query: 856 MDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHL 915
M+TLPYQLNK+ELRLATLSEQMRLLYVAMTR+EKK+Y +GK S+ K D D K L
Sbjct: 1 METLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKLGKLL 60
Query: 916 PVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKD 975
P+A RE LTFQDWLLAI ++ ++L+F FI D DLT++ +G L+ Q + D+LKD
Sbjct: 61 PLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPDDLKD 120
Query: 976 NRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQ 1035
NRQS+ I RALDMLEAV +LN +Y+AAIHLPTVRTPSQ+K YEP++E GV++++ S +
Sbjct: 121 NRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIEKSSR 180
Query: 1036 TKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAI 1095
+ F LP FSKK K + + +GS++H+LMQ L LS+ ++ + +L AL E+ E VK A+
Sbjct: 181 SLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDALREIDSNEEVKTAL 240
Query: 1096 QVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRI 1155
+ KI FF + LG+ Q +YREAPFA+L+ DP S E+YV+RGIID Y LFD+ I
Sbjct: 241 DLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYFLFDDHI 300
Query: 1156 VLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
VL DYKTDK+ +K+RY+ Q+ LYA+AL+Q+Y + YL+L+GG K E+VE+
Sbjct: 301 VLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKPEIVEV 357
>gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630]
gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A [Clostridium difficile 630]
Length = 1275
Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats.
Identities = 346/1288 (26%), Positives = 608/1288 (47%), Gaps = 175/1288 (13%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ+E I + N+LV+A+AGSGKT V++ERI+ I + ID+L + TFT A
Sbjct: 5 KWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I + L ++ + L QL+ L + I T+ +F ++ + + +
Sbjct: 65 ASEMRERIGDAIGKAL---DENPENKHLQNQLVLLNKSSITTIHSFCLDVIKSNFHRINL 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D++E +LK + +++F D ++ E F LV ++A R + II
Sbjct: 122 DPNFRI-GDQTECAILKQEAIEEVFEDLYE-ERDEGFLNLVESYA-ERGGDKEVQDIILG 178
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQ--------ETALALR 255
IY F+ A+ P++WL+++ + N ++F + L+T++ AL+
Sbjct: 179 IYSFAMASPEPKKWLIDSAER-FNIDENFDFSQSIWARAILDTVKIEINGLCLNMERALK 237
Query: 256 DVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGR----------DGLGKL 305
+V +E+ + K + + K+ + Q +D Y + G+ ++
Sbjct: 238 EVESIEELETFAEKLS-----VEYKKIADISQACNKSWDEAYKKMASMSFENYVKGVKRI 292
Query: 306 ANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGL--KHLETIFKYQDQSLPLLQVLQSFT 363
+ D + I + ++ +SL S + K ++I + +++ + S
Sbjct: 293 SKDAPSYIKESKE-KAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVV 351
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHEVMVDEY 415
L F ++Y K ++ +F+DI HFA+ IL + D I Y +K++E+ +DEY
Sbjct: 352 LRFEEEYSNKKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEY 411
Query: 416 QDNNHTQERMLELLSNGR--NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH--PEHGK 471
QD+N QE +L+ ++N NRFMVGD+KQSIYRFRQA P++F QK+ ++ + H K
Sbjct: 412 QDSNLVQEVLLKAVANTETPNRFMVGDVKQSIYRFRQAKPELFLQKYNNYNDKKGSSHRK 471
Query: 472 LILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSS------AQKIPYPQ 525
++L K NFRS+ EV+DA N +F ++M+E +GEI Y + +L G++ + I
Sbjct: 472 IMLYK-NFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIGGA 530
Query: 526 NETQVLIYDTKDQQNQDLAVED---------------DSNQISLGEVKLVAKEIIRLHNE 570
E ++ D K + +D D+ Q+ V + K++++++ +
Sbjct: 531 TEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVNED 590
Query: 571 EKVQ--------------FEDITLLVSSRTRNDGIL-QTFDDYGIPLVTDGGEQNYLKSV 615
K+Q F DI +L+ + + + + IP D G Y ++
Sbjct: 591 GKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPVFADELMNMDIPTYADVG-VGYFDTI 649
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL-----YE 670
E+ +L L+ IDNP+ D L+++L+SP+F F +DL + +Q+ + L Y+
Sbjct: 650 EIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKSTAEYD 709
Query: 671 KMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYV 730
+++N + E ++ D F ++E S+ S + IW +Y YY YV
Sbjct: 710 GFTDSQNENESEFIPSEECINKSKD-FLIKLKEFKEKSMYMSTDEFIWYLYTRTGYYAYV 768
Query: 731 GSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNA 789
G+LP QRQANL L RA FE+T KG+ F+ I+K+ ++ +D+ + + N
Sbjct: 769 GALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGENANV 828
Query: 790 VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL 849
V +M+IHKSKGLEF V + K F+ QD ++ G G +++ +
Sbjct: 829 VRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYER-------- 880
Query: 850 PTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKLGDQYD 907
++S ++ + K ++ + LSE+MR+LYVA TR+++KL + G + Q+ + +
Sbjct: 881 ---RISFPSIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSN 937
Query: 908 GKSENNHLPVADREHYLTFQDWLL----------------AIEAAYAAD-------ELHF 944
G + + + F DW++ ++A + + +L
Sbjct: 938 GIESLDTISQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWN 997
Query: 945 KTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLN--QHYKAA 1002
K + ++ E+K E + D +N + E EKLN Y+ +
Sbjct: 998 KNDILVEKKSDEEKESIEEILEKIDVNNPDSDYYG----------EIEEKLNYIYPYEFS 1047
Query: 1003 IHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF----SKKAKQDPTALGS 1058
P + ++IKK E E++ T ++ K + P F ++ K T G+
Sbjct: 1048 TRKPATISVTEIKKIQNNYEE----ELINTIFEQKVILKKPLFIQNEEEREKISGTERGT 1103
Query: 1059 SVHELMQRLHLSEQVSLEDILTAL----AELSVEENVKKAIQVDKILHFFQTSQLGKLIQ 1114
VH +M+ L L S+ DI + + ++ + E + KI FF S +GK +
Sbjct: 1104 IVHLVMEVLDLKNVSSVNDIKSQIRGFVSKGIITEKQASIVNPYKIYKFF-ASNIGKRM- 1161
Query: 1115 ANADKVYREAPF-------------AMLQADPAS---GEDYVVRGIIDGYILFDNRIVLF 1158
NA+ + RE ++ D E ++RGI+D Y DN+IVL
Sbjct: 1162 LNAEIINREKSIYAQVNMKDIYIYEKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLV 1221
Query: 1159 DYKTDKFTNSQAIK---ERYRGQMTLYA 1183
DYKTD F N + I E+Y+ Q+ LYA
Sbjct: 1222 DYKTD-FVNEENINQIIEKYKKQLDLYA 1248
>gi|148378439|ref|YP_001252980.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
3502]
gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
3502]
Length = 1279
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 365/1303 (28%), Positives = 615/1303 (47%), Gaps = 164/1303 (12%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI+T N+LV+A AG+GKT V+++RI++KIL + ID+L + TFT A
Sbjct: 5 KWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L ++ + L +QL L ++I T+ +F +++ +T+ I
Sbjct: 65 AAEMRERIGDAISKGL---DEDPESKVLRKQLTLLNKSNIMTIHSFCLQVIKNNFHTMEI 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D++E L+K + D+LF D + E F LV ++A +RKD+ ++++ +
Sbjct: 122 DPNFRIC-DETEGILMKQEAIDELF-DELYEIENEDFINLVESYA-SRKDT-RLQEVVLE 177
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD-LED 262
++ F+++ WLL N + N ++F+ E D + +++ + L + L+
Sbjct: 178 LHRFAKSAPFSYDWLL-NMAEEFNVGEEFN-FEETPWADMI--MEDMKVLLHGFKNMLQQ 233
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVA 322
V Y KM + +L S G +A D L N
Sbjct: 234 SIDVILNSEGIDYYYEPFKMDLSFINSLLEKSSFKEFRG-EIIAYDFPKLPLKRNKDADK 292
Query: 323 GVKYPVFRSLHSRLRGLKHLETIF-KYQDQSL--------PLLQVLQSFTLDFSKQYLQA 373
K V + + + L+ I Y+++ + P ++ L + + F K+Y
Sbjct: 293 EAKERVKKLRDKVKKKIVELKNILDSYENEFIKKEFIFLYPSMKALSNLVILFDKKYEAK 352
Query: 374 KMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHEVMVDEYQDNNHTQERM 425
K + + +F+DI H + IL + ++ I Y K+ EV++DEYQD+N QE +
Sbjct: 353 KRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNLVQEVI 412
Query: 426 LELLS---------NGR--------------------NRFMVGDIKQSIYRFRQADPQIF 456
+ ++S NG+ NRFMVGD+KQSIYRFRQA P+IF
Sbjct: 413 MSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQAKPEIF 472
Query: 457 NQKFKDF-QEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAG 515
K+ ++ +E + + L +NFRS+ EV++ N +F +M + +GE+ Y + L G
Sbjct: 473 LDKYNEYSEEEGTKNRKVKLFKNFRSRKEVINGVNYLFKQIMSKTIGELDYTEEEALKVG 532
Query: 516 SSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQ------ISLGEVKLVAKEIIRL-- 567
+S + ++ + D K + ++++ E + ++ I L E +LVAK+I +L
Sbjct: 533 ASYGE-EVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQL-EGRLVAKKIQKLVG 590
Query: 568 HNEE--------------KVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGEQNYL 612
+N E +Q+ DI +L+ + + I ++ GIP+ D Y
Sbjct: 591 NNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPIFVEELAKEGIPVFADT-NSGYF 649
Query: 613 KSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKM 672
+ E+ M+ L+ IDNPL D L+++LRSP+ +F +D+L + + N YE M
Sbjct: 650 DTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVN----KNITFYECM 705
Query: 673 E-------------------NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
E N + ++ + E L K+ +F E WRE S+ +
Sbjct: 706 EIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSIHIDI 765
Query: 714 YDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILE 773
+ IW +Y + YY Y G+L EQRQANL L RA + KT +KGL FI I+K+
Sbjct: 766 DEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFINKLKF 825
Query: 774 NQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
+ D+ ++ +N V +M+IHKSKGLEF V + K F++ D+ ++ R G
Sbjct: 826 SSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGY 885
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
G Y+ + +++ +L + K ++RL TLSE+MR+LYVA+TR+ +KL
Sbjct: 886 GPDYVDTER-----------RIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLI 934
Query: 893 LVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFIT 950
+ G + + D + + N +P T+ DW+ + D + F+
Sbjct: 935 ITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKH-KDAVSFREELKM 993
Query: 951 DEDLTE--DKMGSLEAEQAYDADNLKDNRQ------SDDITRALDMLEAVEKLNQHYKA- 1001
+L+ D + E + LK+ + S+ I L LE + YK
Sbjct: 994 TSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRL 1053
Query: 1002 --------AIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDP 1053
A +PT + S +KK + + E+ + KP F +K K P
Sbjct: 1054 SFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMF----MEEKKKISP 1109
Query: 1054 TALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENV----KKAIQVDKILHFFQTSQL 1109
+ G+ +H MQ L L + + EDI + L E + K I KIL F + +L
Sbjct: 1110 SERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVINPYKILKFCR-GEL 1168
Query: 1110 GKLIQANADKVYREAPFAM----------LQADPASGEDYVVRGIIDGYILFDNRIVLFD 1159
GK I N++ V +E PF++ L + E +++G+ID Y ++ +VL D
Sbjct: 1169 GKRI-LNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLD 1227
Query: 1160 YKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
YKTD + + IK RY Q+ Y +AL++ D YL L
Sbjct: 1228 YKTDYVNDIEEIKNRYEIQIKYYEEALNRITGKNVKDKYLYLF 1270
>gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397]
gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall]
gi|152926902|gb|ABS32402.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397]
gi|152931120|gb|ABS36619.1| recombination helicase AddA [Clostridium botulinum A str. Hall]
Length = 1279
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 365/1303 (28%), Positives = 615/1303 (47%), Gaps = 164/1303 (12%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T EQ +AI+T N+LV+A AG+GKT V+++RI++KIL + ID+L + TFT A
Sbjct: 5 KWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ I++ L ++ + L +QL L ++I T+ +F +++ +T+ I
Sbjct: 65 AAEMRERIGDAISKGL---DEDPESKVLRKQLTLLNKSNIMTIHSFCLQVIKNNFHTMEI 121
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D++E L+K + D+LF D + E F LV ++A +RKD+ ++++ +
Sbjct: 122 DPNFRIC-DETEGILMKQEAIDELF-DELYEIENEDFINLVESYA-SRKDT-RLQEVVLE 177
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD-LED 262
++ F+++ WLL N + N ++F+ E D + +++ + L + L+
Sbjct: 178 LHRFAKSAPFSYDWLL-NMAEEFNVGEEFN-FEETPWADMI--MEDMKVLLHGFKNMLQQ 233
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVA 322
V Y KM + +L S G +A D L N
Sbjct: 234 SIDVILNSEGIDYYYEPFKMDLSFINSLLEKSSFKEFRG-EIIAYDFPKLPLKRNKDADK 292
Query: 323 GVKYPVFRSLHSRLRGLKHLETIF-KYQDQSL--------PLLQVLQSFTLDFSKQYLQA 373
K V + + + L+ I Y+++ + P ++ L + + F K+Y
Sbjct: 293 EAKERVKKLRDKVKKKIVELKNILDSYENEFIKKEFIFLYPSMKALSNLVILFDKKYEAK 352
Query: 374 KMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDKYHEVMVDEYQDNNHTQERM 425
K + + +F+DI H + IL + ++ I Y K+ EV++DEYQD+N QE +
Sbjct: 353 KRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNLVQEVI 412
Query: 426 LELLS---------NGR--------------------NRFMVGDIKQSIYRFRQADPQIF 456
+ ++S NG+ NRFMVGD+KQSIYRFRQA P+IF
Sbjct: 413 MSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQAKPEIF 472
Query: 457 NQKFKDF-QEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAG 515
K+ ++ +E + + L +NFRS+ EV++ N +F +M + +GE+ Y + L G
Sbjct: 473 LDKYNEYSEEEGTKNRKVKLFKNFRSRKEVINGVNYLFKQIMSKTIGELDYTEEEALKVG 532
Query: 516 SSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQ------ISLGEVKLVAKEIIRL-- 567
+S + ++ + D K + ++++ E + ++ I L E +LVAK+I +L
Sbjct: 533 ASYGE-EVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQL-EGRLVAKKIQKLVG 590
Query: 568 HNEE--------------KVQFEDITLLVSSRTRNDGI-LQTFDDYGIPLVTDGGEQNYL 612
+N E +Q+ DI +L+ + + I ++ GIP+ D Y
Sbjct: 591 NNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPIFVEELAKEGIPVFADT-NSGYF 649
Query: 613 KSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKM 672
+ E+ M+ L+ IDNPL D L+++LRSP+ +F +D+L + + N YE M
Sbjct: 650 DTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVN----KNITFYECM 705
Query: 673 E-------------------NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
E N + ++ + E L K+ +F E WRE S+ +
Sbjct: 706 EIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSIHIDI 765
Query: 714 YDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILE 773
+ IW +Y + YY Y G+L EQRQANL L RA + KT +KGL FI I+K+
Sbjct: 766 DEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFINKLKF 825
Query: 774 NQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
+ D+ ++ +N V +M+IHKSKGLEF V + K F++ D+ ++ R G
Sbjct: 826 SSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGY 885
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
G Y+ + +++ +L + K ++RL TLSE+MR+LYVA+TR+ +KL
Sbjct: 886 GPDYVDTER-----------RIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLI 934
Query: 893 LVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFIT 950
+ G + + D + + N +P T+ DW+ + D + F+
Sbjct: 935 ITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKH-KDAVSFREELKM 993
Query: 951 DEDLTE--DKMGSLEAEQAYDADNLKDNRQ------SDDITRALDMLEAVEKLNQHYKA- 1001
+L+ D + E + LK+ + S+ I L LE + YK
Sbjct: 994 TSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRL 1053
Query: 1002 --------AIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDP 1053
A +PT + S +KK + + E+ + KP F +K K P
Sbjct: 1054 SFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMF----MEEKKKISP 1109
Query: 1054 TALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENV----KKAIQVDKILHFFQTSQL 1109
+ G+ +H MQ L L + + EDI + L E + K I KIL F + +L
Sbjct: 1110 SERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYKILKFCR-GEL 1168
Query: 1110 GKLIQANADKVYREAPFAM----------LQADPASGEDYVVRGIIDGYILFDNRIVLFD 1159
GK I N++ V +E PF++ L + E +++G+ID Y ++ +VL D
Sbjct: 1169 GKRI-LNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLD 1227
Query: 1160 YKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
YKTD + + IK RY Q+ Y +AL++ D YL L
Sbjct: 1228 YKTDYVNDIEEIKNRYEIQIKYYEEALNRITGKNVKDKYLYLF 1270
>gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
Length = 1238
Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats.
Identities = 286/921 (31%), Positives = 467/921 (50%), Gaps = 104/921 (11%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILE-ENDAIRQ---LYID---K 406
P++ L T FS+Q+ AK++ +FSD+ H+A+QIL E D Q + +D +
Sbjct: 350 PIIGTLVELTTIFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGELQPSPVALDLKKR 409
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ EV+VDEYQD N QE +L+L+ +G N FMVGD+KQSIYRFR A+P++F +K+ +
Sbjct: 410 FKEVLVDEYQDTNMLQETILQLVKSGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSE 469
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
F E PE G I L NFRS+ EVL+ATN +F +M E VGEILYDD L +
Sbjct: 470 FLETPEVTGMRIDLNANFRSRKEVLNATNYIFAQIMGERVGEILYDDNASLKPAA----- 524
Query: 522 PYPQNETQVLIYDTKDQQNQDLAVEDDSNQI----------SLGEVKLVAKEIIRLH--- 568
PY + E V + Q++++ E + S E + + I ++
Sbjct: 525 PYDEKEVPVELVVMHPPQDEEVVDEQEDKTEEATELEELKKSQYEARFIIDRIRQMMEDG 584
Query: 569 ---------NEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMV 619
E +++ DI +L+ S T + +++ F GIPL + + Y ++EVM+
Sbjct: 585 TTVYDTKSLTERPLKYSDIVILMRSMTWSTDLVEEFKLAGIPLYAES-SKGYFDALEVMI 643
Query: 620 MLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQ 679
ML+ L+ +DNP D L ++LR+P E++LA++ L + K Y+ + +
Sbjct: 644 MLNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLAD----SKVPFYDALRQFIRSE 699
Query: 680 GQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQR 739
GQ++Q T KL F F +WR+ + SL DLIWKIY D YY+ VG++P +QR
Sbjct: 700 GQEIQTTT---FEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQR 756
Query: 740 QANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE-VALPKNAVTLMTIHKS 798
QANL L RA +E+T F+GL RF+R ID++ +DL + + + V L+TIH S
Sbjct: 757 QANLRILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSS 816
Query: 799 KGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDT 858
KGLE+ VF+ + + F+ D +P + + G+ +K I P +++ +
Sbjct: 817 KGLEYPVVFVAGMGRPFNKMDFHNPYLFDQDFGLAVKAID-----------PENRITYTS 865
Query: 859 LPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGK-GSQEKLGDQY-DGKSENNHLP 916
LP+ K + L +E+MR+LYVAMTR++++L LVG + EK D + D ++ ++ P
Sbjct: 866 LPFLALKEKKELEMRAEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNISSDAP 925
Query: 917 VAD--REHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQ-AYDADNL 973
+ + R ++ DW+ A + TS+ + + + ++ +YD
Sbjct: 926 LQEYLRARANSYLDWVGPAVARHGDFASQATTSYKELDSPSHWWIQPVDTRHYSYDIQPF 985
Query: 974 KDNRQSDDITRALDML--EAVEKLNQH--YKAAIHLPTVRTPSQIKKFYEPVMETEGVE- 1028
D+ Q T+ + L E + Y+ + + + S+IK+ E + E E
Sbjct: 986 DDDIQQLLTTQEDEALLSEITTRFQAQYTYQKSTRKRSKTSVSEIKRI-ENLQRQEEPEY 1044
Query: 1029 -----VMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTA-- 1081
QTS P+ P F + + +G++VH +MQ + Q +DI
Sbjct: 1045 YFAPPAKQTSASIAPR---PTFLQDQQLTGAEIGTAVHTVMQHI---PQFGFDDIGAVKG 1098
Query: 1082 -----LAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASG 1136
+A+ + E K + + K+ HFF T ++G+ + A ++ RE PF + + D G
Sbjct: 1099 FVADLVAKQLLTEAEGKVVPIAKVFHFFHT-EIGQRFK-QARQIRREMPFTISRVD-EDG 1155
Query: 1137 EDYVVRGIIDGYILFDNRI---VLFDYKTDK----FTNSQAIKE----RYRGQMTLYAQA 1185
+ +V+GIID LF++ VL DYKTD+ F A+ + RY Q+ +Y++A
Sbjct: 1156 DAQIVQGIID--CLFEDEYGNWVLLDYKTDRILPHFAKEPALTKEIMGRYAVQLRVYSEA 1213
Query: 1186 LSQSYNIQQVDSYLILLGGEK 1206
+ I+ D L L E+
Sbjct: 1214 IESILQIKVSDKVLYLFDNEQ 1234
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 113/196 (57%), Gaps = 11/196 (5%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AIY SG + LVSA+AGSGKT V+I R+++K++ + +D+L + TFT +A
Sbjct: 15 TDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E++ R+ + + E+ + N T+ L QL + A I T+ +F +V QY Y L I P
Sbjct: 75 EMRHRMSEAL-EKAIVENPTS--NHLRRQLSLINKAQISTLHSFCLAIVKQYAYMLDIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFT---DYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
FRI +++E LL++D+ D+ D Q + +LV +F +R D + +I
Sbjct: 132 GFRI-ANEAEVALLRDDIVADVLEGAYDSEEETQIQAIYRLVDSFTSDRDDQA-IETLIS 189
Query: 203 KIYDFSQATDNPQRWL 218
K+YD S+ PQRWL
Sbjct: 190 KLYDTSRVHAEPQRWL 205
>gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
Length = 1247
Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats.
Identities = 339/1264 (26%), Positives = 592/1264 (46%), Gaps = 148/1264 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL----------RGVTIDQLFIST 78
T EQ I + N+LVSA+AGSGKT V++ERI++ ++ + ID++ + T
Sbjct: 6 TDEQKSVINSRHGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEVLVVT 65
Query: 79 FTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYG 138
FT AA ++KE++ K+ + D + + +QL L ADI T+D+F +V Y
Sbjct: 66 FTRAAAAQMKEKIADKLEQA---AEDHPEDEHIVKQLSLLPRADIMTIDSFCLGIVKDYF 122
Query: 139 YTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFR 198
+GI +F I D +E DL+KND+ D++ + + + ++ F LV +FA D R
Sbjct: 123 QMIGIDSSFDI-ADNAEMDLIKNDILDEVL-EQKYQEASDEFIGLVDSFARKESDE-KIR 179
Query: 199 QIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPE----QEVKDFLNTLQETALAL 254
+++Y+IY + P+RW+ E A T + S E + +D++ + +T +
Sbjct: 180 ELVYQIYRVASGYPKPERWINE-----AETALEVSTKEELYTLKWYRDYMQIVADTLDSA 234
Query: 255 RDVTDLEDYKQVTAKGTPTAAYQ-------RHLKMIEQLQDWVLHFDSLYGRDGLGKLAN 307
+ E ++ + A Y L+ + Q +D D Y R + K +N
Sbjct: 235 --IGQAEQCLEIAGEADGPAGYDPIIRLDLELLRNLRQAED----MDEAYKR--VSKFSN 286
Query: 308 --DIATLIPSGNDVTVAGVKYPVFRSLHSRLRG-LKHLETIFKYQDQSLPL-------LQ 357
IA P K ++ RG +K + +F+ L L
Sbjct: 287 LKRIAACDPE---------KQQYVKTTMQTYRGSVKDMMALFRPTGVILSECAMMKGPLS 337
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQIL----EENDAI-----RQLYIDKYH 408
L S T + ++ + K+ N +EF DI+ FA IL +EN + + +Y
Sbjct: 338 ALLSLTRSYMERLKEEKLDRNLYEFRDISEFAYDILCAGTDENGCVIPSEAGKTVARRYR 397
Query: 409 EVMVDEYQDNNHTQERMLELLS----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ 464
E+++DEYQD+N QE +L ++ + +N FMVGDIKQSIYRFR A P +F K+ +
Sbjct: 398 EILIDEYQDSNFLQEDILNCVTGHGEDRKNMFMVGDIKQSIYRFRMARPDLFLNKYNTYS 457
Query: 465 EHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPY 523
+ + + ILL NFRS +V+D N +F LM E +G I YD++ +L G +
Sbjct: 458 DREDAEDQKILLSNNFRSAGKVIDTINQIFEPLMSENLGGIDYDESAKLHIGRQDKNNMG 517
Query: 524 PQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEK----------- 572
+E ++ D D + + + E +++A EI L +K
Sbjct: 518 YGSEILIVRNDCADSEKSQPEEIRSLTNVDI-EARMIADEIYELVKGDKPLYIPDGDNGE 576
Query: 573 ---VQFEDITLLVSSRTRN-DGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSID 628
V + DI +L+ S +N + F + GIPL + E Y ++E+ +LD L ID
Sbjct: 577 TRRVSYRDIAVLMRSVKKNAKAFEEAFAERGIPLFVES-ESGYFDAIEISTLLDMLAVID 635
Query: 629 NPLNDYALVALLRSPMFAFDEDDLARLALQNLPD--QHKQNLYEKMENARNGQGQQVQLI 686
N DYAL A+LRSP+ E +LA + D H++NL + +
Sbjct: 636 NSHQDYALAAVLRSPLAGVKEQELAEIVGIYDRDFKDHEKNLARTASFYQKVCYYAEKPD 695
Query: 687 TEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYAL 746
+EA S +L F SW+ S+ +L+ I YY +VG++ ++RQAN+ L
Sbjct: 696 SEA-SEELRQFLRMLDSWKADKNYMSISELLHSILEQTGYYWFVGAMQSGKRRQANIDML 754
Query: 747 ALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKY 805
+AD +E + F+GL F+R +D++ N D A+ V ++V +MT+HKSKGLEF
Sbjct: 755 IQKADTYEDSSFRGLFNFLRYMDRLKTNDLDFAEASVLGDDDDSVVMMTMHKSKGLEFPV 814
Query: 806 VFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNK 865
VF+ + +FS D SP+ ++ + + Y D K ++K + +M ++
Sbjct: 815 VFVSGLANRFSNLDALSPVTVNADSYLA-GYAIDRKNRAKKKTF--ARAAMLSV------ 865
Query: 866 RELRLATLSEQMRLLYVAMTRSEKKLYLVGK----GSQEKLGD---QYDGKSENN----- 913
+ L+E++R+LYVA++R+++KLY+ G+++ + D Q D E +
Sbjct: 866 --MNAEKLAEEIRILYVALSRAKEKLYMTAAVKDPGAEKAVFDYPLQTDFLIEASGQMRM 923
Query: 914 HLPVADREHYLTFQDWLLAIEAAYAADE--LHFKTSFIT--------DEDLTEDKMGSLE 963
LP R F DW+L+ + + E + K ++ T + +
Sbjct: 924 ELPYITRMEAGCFMDWILSALSMHIVSEDIVCRKDTYATWVLAKTGYQNQILAGTKTDMS 983
Query: 964 AEQAYDADNLKDNRQSDDITRA-LDMLEAVEKLNQH---YKAAIHLPTVRTPSQIKKFYE 1019
E A +N +N+ I + + E ++L + YK + + ++IK+
Sbjct: 984 EENAVQTENETENKSKSMIAQEDRQLYEKYKELLDYTYPYKTEQAVKNKMSVTEIKRLAH 1043
Query: 1020 PVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTA---LGSSVHELMQRLHLSEQVSLE 1076
E G ++ Q T+ + +P + K++P +G+ +H++M+ + + S++
Sbjct: 1044 RGEENPGSDLYQPPV-TEAELTIPVLHSRMKEEPVKGNEMGTVIHKIMELIDFTRN-SMD 1101
Query: 1077 DILTALAEL----SVEENVKKAIQVDKILHFFQTSQLGKLIQANAD-KVYREAPFAMLQA 1131
+I + +EE ++ ++ DKI + + ++ +A + +YRE F +
Sbjct: 1102 EIREQIRSFFDHGYLEERYREHVRADKIYNMVNSPLGIRMAEAQKNHTLYREQQFYIGMK 1161
Query: 1132 DPASGEDY-------VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
+Y VV+G+ID Y L +++VL DYKTD+ + RY Q+ +YA+
Sbjct: 1162 PEDISPEYKDSKDMVVVQGVIDAYFLEGDQVVLMDYKTDRVDQISDLVSRYHVQLDMYAK 1221
Query: 1185 ALSQ 1188
+ Q
Sbjct: 1222 TIHQ 1225
>gi|56808112|ref|ZP_00365901.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains)
[Streptococcus pyogenes M49 591]
Length = 253
Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats.
Identities = 184/249 (73%), Positives = 213/249 (85%), Gaps = 5/249 (2%)
Query: 411 MVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHG 470
MVDEYQDNNH QER+L LLSNG NRFMVGDIKQSIYRFRQADPQIFNQKF+D+Q+ PE G
Sbjct: 1 MVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFRDYQKKPEQG 60
Query: 471 KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530
K+ILLKENFRSQSEVL+ +N+VF+HLMDE+VG++LYD+ HQL+AGS AQ +PY Q+
Sbjct: 61 KVILLKENFRSQSEVLNVSNAVFSHLMDESVGDVLYDEQHQLIAGSHAQTVPYLDRRAQL 120
Query: 531 LIYDT-KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRND 589
L+Y++ KD N DS IS EV +VAKEII+LHN++ V FEDITLLVSSRTRND
Sbjct: 121 LLYNSDKDDGN----APSDSEGISFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRND 176
Query: 590 GILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
I TF+ YGIP+VTDGG+QNYLKSVEVMVMLDTLR+I+NP NDYALVALLRSPMFAFDE
Sbjct: 177 IISHTFNQYGIPIVTDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDE 236
Query: 650 DDLARLALQ 658
DDLAR+ALQ
Sbjct: 237 DDLARIALQ 245
>gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
Length = 1221
Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats.
Identities = 335/1249 (26%), Positives = 593/1249 (47%), Gaps = 141/1249 (11%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKA 83
K T EQ + I NILVSA+AGSGKT V++ERI+ + + + +D+L I TFT A
Sbjct: 4 KWTEEQEKVIRLRNRNILVSAAAGSGKTAVLVERIITMLTKDDPPMDVDRLLIVTFTEAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+KER+ I ++L D + L +Q + A I T+ +F ++ + + + I
Sbjct: 64 ASEMKERIRLAIEKKLMEYPDN---EHLKQQATLIHNAQITTIHSFCLSVIRDHFHAIDI 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
P FRI ++ E LL++DV +D+ + Y+ G ++ F ++ R D +I
Sbjct: 121 DPGFRI-GEEGELKLLRHDVLEDMLEEKYQEG--SKRFLDFTAAYSTGRNDK-KIEDLIL 176
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTD--- 259
KIY+FS++ + + WL S + E+ D + L+ +++ + +TD
Sbjct: 177 KIYEFSRSYPDSEAWL-------------DSCVKAYEIPD-VKALEGSSIMKKVMTDIRK 222
Query: 260 -LEDYKQVTAKGTPTAAYQRHLKMIE-QLQDWVLHFDSLYGRDGLGKLANDIATL----I 313
LED K++ A + E L+ + + L R LA + + I
Sbjct: 223 NLEDAKELLIYAENVALSPEGPAVYEATLEKDLQVIEELCNRASYKSLAEAFSNVKWARI 282
Query: 314 PSGNDVTVAGVKYPVFRSLHSRLRGL-KHLETIFKYQDQS---------LPLLQVLQSFT 363
+ D TV+ K + + + ++G+ K++ + Y+ P ++ L
Sbjct: 283 AANKDKTVSEEKIDLVKKIREMVKGIVKNMSAQYFYESPEELVEDLRVCTPAMEELADLV 342
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEEN-------DAIRQLYIDKYHEVMVDEYQ 416
F++++ + K +N +FSD+ +A++IL + I + Y ++ E+M+DEYQ
Sbjct: 343 RLFAERFEEQKRAQNMIDFSDMEQYALRILTQKTENGFVPSKIAEEYQKQFEEIMIDEYQ 402
Query: 417 DNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKL 472
D+N QE +L +S R N FMVGD+KQSIYRFR + P++F +KF+ + +
Sbjct: 403 DSNLIQEAILTSVSGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTYNIEESKTQR 462
Query: 473 ILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE---TQ 529
I L +NFRS+ EVL++ N++F +M E +G I+YDD L G+ YP+N+ T+
Sbjct: 463 IDLHKNFRSRKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAE-----YPENDNVKTE 517
Query: 530 VLIYDTK-DQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEK-----------VQFED 577
+L+ D+ + +++ E+ E +++A I L +K V++ D
Sbjct: 518 ILVMDSDLEILSKEEDFEEKIPSERELEARMIAMRIRELLRSQKVTDKETGELRNVRYSD 577
Query: 578 ITLLVSS-RTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYAL 636
I +L S + D + + GIP G + Y ++ E+ V++D LR +DN D L
Sbjct: 578 IVILTRSIKGFADVFTEVLNREGIPTYA-GTSEGYFQTQEIGVLMDYLRVLDNRRQDIPL 636
Query: 637 VALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR-NGQGQQVQLITEALSAKLD 695
A+L S +++LA + PD +E + R G+ +QL + ++D
Sbjct: 637 TAVLSSAFAGLSQEELAEIRCA-YPD---TAFFESVTKYREQGENADIQLKLQKCLDQMD 692
Query: 696 AFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEK 755
F R+ +++L+WKI Y DYV S+P QR+ANL L +A +E
Sbjct: 693 DF-------RKIVPYTPMHELLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYES 745
Query: 756 TGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKK 814
T +KGL F+R I+++ + D + + + V +MTIHKSKGLEF V + + K+
Sbjct: 746 TSYKGLFHFVRYIEQLQKYDVDYGEASIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKR 805
Query: 815 FSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLS 874
F++QD S + L GVG+ + E K+ +K ++ ++E L +L
Sbjct: 806 FNMQDARSAVALHAGMGVGLDAV---NLEYRTKIPSIIK--------KVIQKEEALESLG 854
Query: 875 EQMRLLYVAMTRSEKKLYLVGKGS--QEKLGD----QYDGKSENNHLPVADREHYLTFQD 928
E++R+LYVA+TR+++KL + G S ++K+ D Q + + E + L ++ H +T+ D
Sbjct: 855 EELRVLYVALTRAKEKLIITGTLSNPEDKISDGRVFQGNKRKELSFLQLS---HAVTYWD 911
Query: 929 WLLAIEAAYAADELHFKTSFITDEDLTEDKMG-----SLEAEQAYDADNLKDNRQSDDIT 983
++L + L + + D + S + +D + + + + D +
Sbjct: 912 FILPAVLRTEGEPLKLQILHVEDVVKESIEEEEKSGISRAVLENWDVNEIYEPKLHDMMK 971
Query: 984 RALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELP 1043
+ + EK + + +I E E++Q + P +P
Sbjct: 972 EQFEFIYPYEKSSMRKLKFTVTELKKRAYEIGLDGGEEEREEEGELLQEEPEVVPM--IP 1029
Query: 1044 QFSKKAK-QDPTALGSSVHELMQRLHLSEQVSLEDILTALAEL----------------S 1086
QF ++ + A G++ H +M+ L + + E
Sbjct: 1030 QFLQEDEVLAGAARGTAYHRVMELLDMKGMPEFTEDTAGEKENWKKYFMDWLDDQVRRGR 1089
Query: 1087 VEENVKKAIQVDKILHFFQTSQLGKLIQANA-DKVYREAPFAM------LQADPASGEDY 1139
+EE+ + I + IL F ++ +L +A+ +++RE PF + L + GE
Sbjct: 1090 IEEDAARCICWEDILQFAKSGIGRRLREADGKQRLWREQPFVLGIDARELYPEEEDGELI 1149
Query: 1140 VVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQ 1188
+V+GIID Y + +V+ DYKTDK + + ERY+ Q+ YA+AL Q
Sbjct: 1150 LVQGIIDAYFEEPDGLVVLDYKTDKVRRKEELAERYQEQLRYYAKALEQ 1198
>gi|153196984|ref|ZP_01941283.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes 10403S]
gi|127633439|gb|EBA22851.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes 10403S]
Length = 1108
Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats.
Identities = 318/1154 (27%), Positives = 562/1154 (48%), Gaps = 142/1154 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+A L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALGQNPDSA---HLKRQVALLNYASISTLHSFCLEIIRKYYFEADIDP 131
Query: 146 NFR--------ILQDKSEQDLLK-------NDVFDDLFTDYRTGDQAE-----LFTKLVR 185
+FR +++D+ + LL+ N+ F L + TGD+++ L +KL
Sbjct: 132 SFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVESF-TGDRSDAELHSLISKLY- 189
Query: 186 NFAGNRKDSSNFRQIIYKIY---DFSQATDNPQRWLLE-----------NFLKGANTYKD 231
+F+ D + + + + Y + + T+ P +++ N+L A Y +
Sbjct: 190 DFSRANPDPNAWLEAMVNFYNTEEITSITELPYFPIIKEDIELRVNQAKNYLLNAINYAN 249
Query: 232 FSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDW-- 289
+ P +L TL+ + ++ +++L K + + + ++ D+
Sbjct: 250 ENNGPAP----YLATLENDLVQIQALSELNWSSWTHLKTSIENIDFKRIPTLKNKSDYDE 305
Query: 290 VLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ 349
V ++ RD K +IAT S +V S L +K
Sbjct: 306 VYVEEAKKFRDAAKKEMKNIATDWFSREEVNYL-----------SDLEKMK--------- 345
Query: 350 DQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDK 406
P +Q L F+ + + K Q +F+D+ H A++IL +D + Q Y +
Sbjct: 346 ----PDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKGSEVAQNYQKQ 401
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ EV++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++
Sbjct: 402 FKEVLIDEYQDTNMVQETILRLVTNPSEAQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQT 461
Query: 463 FQEHPE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKI 521
FQ+ +G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G++ +
Sbjct: 462 FQQDGSGNGIRIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTLGANFPET 521
Query: 522 PYPQNETQVLIYDTKDQQNQD--LAVEDDSNQISLGEVKLVAKEII---------RLHNE 570
+ E ++ T+D + +D E NQ+ + + +E+I +L
Sbjct: 522 NAMETELLLIDMKTEDTETEDELSPQELQKNQVESRAIAMKIREMIDNKFPIYDKKLKQN 581
Query: 571 EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNP 630
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ +DNP
Sbjct: 582 RPIQYRDIVILSRAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVVDNP 640
Query: 631 LNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEAL 690
D L A+LRSP+ +E++L ++ + + K Y+ + ++ +
Sbjct: 641 YQDIPLAAILRSPIIGLNEEELGQIRMA----KKKGYFYDALLTYKD-------ITVSET 689
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA
Sbjct: 690 ANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRA 749
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFIL 809
+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 750 NQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVS 809
Query: 810 NIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKREL 868
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 810 GLSRKFNMRDIYSKTLLDKDYGFASSY-----RDVEKMIVYPTI---MQQAIKQKKSREM 861
Query: 869 RLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYLT 925
++E+MR+LYVA+TR+E+KL LV EK + K + LP A R
Sbjct: 862 ----IAEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKC 917
Query: 926 FQDW-------------LLAIEAAYA-ADELHFKTSFITDEDLTEDKMGSLEAEQAYDAD 971
+ DW LL E A E+ + T E +++ E++ +
Sbjct: 918 YLDWIGNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWL--E 975
Query: 972 NLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQ 1031
N+K+++ + D ++ + +AA + ++ +++K+ + + ++ +
Sbjct: 976 NIKEHQPVPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFS-LQDSWSDTTLL 1034
Query: 1032 TSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVS---LEDILTALAELSVE 1088
+Q K + P+F +K K T +G+++H LMQ + L + + LE +L + E +
Sbjct: 1035 KEFQ-KVSLDRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDIL 1093
Query: 1089 ENVK-KAIQVDKIL 1101
+V+ KAI + +IL
Sbjct: 1094 TDVQIKAINIKQIL 1107
>gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262]
gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua]
Length = 1235
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 283/933 (30%), Positives = 474/933 (50%), Gaps = 121/933 (12%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEV 410
P ++ L F++ + + K Q +F+D+ H A++IL +N A + Y ++ EV
Sbjct: 346 PDIKTLSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEV 405
Query: 411 MVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++++Q+
Sbjct: 406 LIDEYQDTNMVQETILLLVTNSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAKYQEYQQD 465
Query: 467 PE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
E G I L +NFRS+ EVLDATN +F LMD+ + EI YD+ +L G+S P
Sbjct: 466 GEGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLGAS---FPEAN 522
Query: 526 N-ETQVLIYDTKDQQNQDLAV----EDDSNQISLGEVKLVAKEII---------RLHNEE 571
N T++L+ D K ++ + E NQ+ + +E+I +L
Sbjct: 523 NMATELLLIDMKSEEKESEDELSPQELQKNQVESRAIATKIREMIDNKFPIYDKKLQQNR 582
Query: 572 KVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ IDNP
Sbjct: 583 PIQYRDIVILARAMTSAPDMEEAMKIKDIPFYANN-NSGYFETTEVATMIALMKVIDNPY 641
Query: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691
D +L A+LRSP+ +E++L ++ + + K ++ M ++ + +
Sbjct: 642 QDISLAAVLRSPIIGLNEEELGQIRMA----KKKGYFFDAMLAYKD-------ITVSDAA 690
Query: 692 AKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751
K+ F +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA+
Sbjct: 691 NKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRAN 750
Query: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILN 810
+EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 751 QYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSG 810
Query: 811 IDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKRELR 869
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 811 LSRKFNMRDIYSKTLLDKDYGFASNY-----RDIEKMIVYPTI---MQQAIKQKKYREM- 861
Query: 870 LATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQYDGKSENNH--LPVADREHYLTF 926
++E+MR+LYVA+TR+E+KL L EK + S LP A R +
Sbjct: 862 ---IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCY 918
Query: 927 QDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDAD-NLKDNRQSDDITRA 985
DW+ ++ HFK E L E+K+ +L + + K+ +DD+ +
Sbjct: 919 LDWIGNATIRHS----HFK------ELLCEEKIKTLPTDMKLQVEIKTKEMFLTDDLEK- 967
Query: 986 LDMLEAVEKLNQHYKAAIHLPTVRTP--SQIKKFYEPVMETE---GVEVMQTSYQTKPKF 1040
E + ++ KA +P V++P +I++F + E G+ Q+ + K +F
Sbjct: 968 ----EKSDNWMENVKAHKQVP-VKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKRQF 1022
Query: 1041 EL--------------------PQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILT 1080
L P+F ++ K T +G+++H LMQ + L ++ + +D L
Sbjct: 1023 SLQDSWSDTSILKEFQKVSLDRPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKD-LV 1081
Query: 1081 ALAELSVEENVK-----KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS 1135
+L +L E+++ KAI V++I+ FF+ S LGK + DKV RE PF+ L PA+
Sbjct: 1082 SLLQLMREKDILTEAQIKAINVNQIIAFFE-SALGKTVLQKKDKVKREVPFSYLL--PAA 1138
Query: 1136 --------GEDYVVRGIIDGYILFDNRIVLFDYKTDKFTN--------SQAIKERYRGQM 1179
E +++G++D I ++ I+L DYKTDK + +KERY+ Q+
Sbjct: 1139 KLYNQTNLDEHVLIQGVVDSMIEEEDSIILIDYKTDKIEGRYDNWEAAEKVMKERYQIQI 1198
Query: 1180 TLYAQALSQSYNIQQVDSYLILLGGEKLEVVEI 1212
LYA+A+ + +YL G+ + + I
Sbjct: 1199 KLYAEAIQAISRKKVSHAYLYFFDGQHICQINI 1231
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 8/193 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKAAG 85
T +Q +AI +G NILV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNVSAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L ++ L +Q+ L A I T+ +F +++ ++ + I P
Sbjct: 75 EMKYRIGKSLEEALVQNPESV---HLKKQVALLNYASISTLHSFCLEIIRKHYFEADIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NFR+++ E +++++V +DL + + E F LV +F G+R D+ +I K+Y
Sbjct: 132 NFRLIE-PIESSMIRDEVLEDLLEKEYSIENNEGFFHLVESFTGDRSDAE-LHTLISKLY 189
Query: 206 DFSQATDNPQRWL 218
DFS+A NP WL
Sbjct: 190 DFSRANPNPDLWL 202
>gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
Length = 1197
Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats.
Identities = 337/1251 (26%), Positives = 590/1251 (47%), Gaps = 168/1251 (13%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T +Q + I NILVSA+AGSGKT V++ERI+ KI V +D+L I TFT A
Sbjct: 4 KWTKQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+K+R+ + I ++L + L Q + +A I T+ +F ++ ++ + + +
Sbjct: 64 AAEMKDRIREAIEKKLE---ENPGNVHLERQATLVHSAPITTIHSFCLSVIREHFHVIDL 120
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
P FRI +D E LLK DV D+L + Y G+ E F F G K+ II
Sbjct: 121 DPGFRIGED-GELKLLKQDVLDELLEECYSKGE--EEFLSFTERF-GTGKNDRKIEGIIL 176
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLED 262
K+Y++S + P++WL + A Y + E+ + + +E L +E+
Sbjct: 177 KLYEYSGSYPRPEQWLD----RCAAVYTE-----EEAAEAMIRRAKEHVL-----IRIEE 222
Query: 263 YKQVTAKG-----TPTAAY------QRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIAT 311
+++ +G P Y + L+ IE+++ F +Y D + +
Sbjct: 223 PEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRK-CSDFAEMY--DAADRF---VWK 276
Query: 312 LIPSGNDVTVAGVKYPVFRSLHSRLR-GLKHLETIFKYQDQSL---------PLLQVLQS 361
+ D +V+ K ++L + + + ++ + Y +S+ ++ L S
Sbjct: 277 TLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKEDMVSAGESVKTLVS 336
Query: 362 FTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEN-------DAIRQLYIDKYHEVMVDE 414
F++++ + K N +F+D+ FA+ IL E A+ Y ++ E+M+DE
Sbjct: 337 LVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVAGEYAKQFEEIMIDE 396
Query: 415 YQDNNHTQERMLELLS---NGRNR-FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHG 470
YQD+N QE +L +S G+N FMVGD+KQSIY FR + P++F QK+ +
Sbjct: 397 YQDSNFVQETILTSVSGQAEGKNNIFMVGDVKQSIYSFRLSRPELFMQKYNTYSLEDSDR 456
Query: 471 KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530
+ I L +NFRS+ EVLD+ N +F +M + +G I YDD+ L G+ K P +
Sbjct: 457 QRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIEYDDSAALYLGA---KFPKTEEIEAK 513
Query: 531 LIYDTKDQQNQDL---------AVEDDSNQISLGEVKLVAKEIIRLH-----------NE 570
++ ++N DL + ++ + E +++A+ I L
Sbjct: 514 RYISSECERNTDLFKTELLILKDRDKEAENVRRSEARMIARRIKSLMRGGVVSDKKTGEY 573
Query: 571 EKVQFEDITLLVSS-RTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDN 629
VQ++DI +L S + + + GIP + E Y ++ EV V+LD L+ +DN
Sbjct: 574 RPVQYKDIVILTRSVKGWAEDFSAVLAEEGIPAYSVSRE-GYFETYEVSVLLDYLKILDN 632
Query: 630 PLNDYALVALLRSPMFAFDEDDLA--RLALQNLPDQHKQNLYEKMENARNGQGQQVQLIT 687
D L A+L SP+ +D+A R+A ++P +Y E A++
Sbjct: 633 GRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFHESARMYAS-EEAQD---------- 681
Query: 688 EALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALA 747
L +L FF +R+ ++DL+ +I + + Y+ ++ QR AN+ L
Sbjct: 682 PVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAMEGGVQRAANVEMLV 741
Query: 748 LRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYV 806
+A FE T +KGL F+R I+++ + D + + + + V +M+IHKSKGLEF V
Sbjct: 742 EKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVV 801
Query: 807 FILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKR 866
F + K+F+ QD S +IL + G+GI I D+K + T +L +
Sbjct: 802 FAAGMGKQFNTQDTKSSMILHPEWGIGIDKI-DLKR----------RTKAPTFLKKLIRE 850
Query: 867 ELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTF 926
E +E+MR+LYVA+TR+++KL + G L D++ +S + + A + Y
Sbjct: 851 EAMYEMWAEEMRILYVALTRAKEKLIMTG-----VLPDRFIMRSGKDGVITAGAKSYF-- 903
Query: 927 QDWLLAIEAA----------------YAADELHFKTSFITDEDLTEDKMGSLEAEQAYDA 970
DW++ + Y +++ + E L D + + + YD
Sbjct: 904 -DWIIPALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDP 962
Query: 971 DNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVM 1030
+I + LD E + + +Y + T S++KK ++ E E M
Sbjct: 963 ----------EIRKCLD--EQADYVYPYYSEG-GMKMKFTVSELKK--RKALQEEAGEEM 1007
Query: 1031 QTSYQTKPKFELPQFSKKAKQ-DPTALGSSVHELMQRLHLSEQVSLEDILTALAELS--- 1086
QT P LP+F K+ + + GS+ H+ ++ L +++ +D+ + L+
Sbjct: 1008 YKEPQTVPL--LPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDG 1065
Query: 1087 -VEENVKKAIQVDKILHFFQTSQLGKLIQANAD-KVYREAPFA-------MLQADPASGE 1137
+ + + I+ + ++ F +T +++QA + K+Y+E PF + Q D SGE
Sbjct: 1066 RLSREMAECIETEDMMRFLRTKSGVRMLQAARNRKLYKEQPFVISVNASEIYQGD-LSGE 1124
Query: 1138 DYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQ 1188
+V+GIID Y ++ +V+ DYKTD+ + + + E+Y Q+ YA ALSQ
Sbjct: 1125 KILVQGIIDVYFEEEDGLVVLDYKTDQVKSRKELVEKYHAQLEYYAHALSQ 1175
>gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116742576|emb|CAK21700.1| addA [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 1235
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 275/927 (29%), Positives = 478/927 (51%), Gaps = 109/927 (11%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEV 410
P ++ + +F+ + + K + +F+D+ H A++IL +ND + + Y ++ EV
Sbjct: 346 PDIKTISELVKNFANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKEV 405
Query: 411 MVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++++Q++
Sbjct: 406 LIDEYQDTNMVQETILLLVTNSEESKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQEYQQN 465
Query: 467 PE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
E G I L +NFRS+ EVLDATN +F LMD+ V EI YD+ +L G++ K +
Sbjct: 466 GEGEGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHVAEIDYDEAAELTLGANFPKSNH-- 523
Query: 526 NETQVLIYDTKDQQNQ---DLAVED-DSNQISLGEVKLVAKEII---------RLHNEEK 572
T++L+ D K +N+ +L+ ++ NQ+ + +E+I +L
Sbjct: 524 MATELLLIDMKSNENESEDELSPQELQKNQVEARAIATKIREMIDNKFPIYDKKLQQNRS 583
Query: 573 VQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLN 632
+Q+ DI +L + T + + IP Y ++ EV M+ L+ IDNP
Sbjct: 584 IQYRDIVILSRAMTSAPDMEEAMKVQDIPFYASN-NSGYFETTEVATMIALLKVIDNPYQ 642
Query: 633 DYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSA 692
D L A+LRSP+ +E++L ++ + + K ++ + ++ + A +
Sbjct: 643 DIPLAAVLRSPIVGLNEEELGQIRMA----KKKGYFFDALLAYKD-------ITVSAAAD 691
Query: 693 KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADN 752
++ F +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL RA+
Sbjct: 692 RISDFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQ 751
Query: 753 FEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNI 811
+EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V I +
Sbjct: 752 YEKTAFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIISGL 811
Query: 812 DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKRELRL 870
KKF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE+
Sbjct: 812 SKKFNMRDIYSKTLLDKDYGFASNY-----RDIEKMIVYPTI---MQQAIKQKKSREM-- 861
Query: 871 ATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQYDGKSENNH--LPVADREHYLTFQ 927
++E+MR+LYVA+TR+E+KL L EK + S LP + R +
Sbjct: 862 --IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQKETILPASIRAKAKCYL 919
Query: 928 DWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAE------------------QAYD 969
DW+ + + TSF + L E+++ +L E + +
Sbjct: 920 DWI--------GNTIIRHTSF--KDLLCEERIQTLPTEMKLQIEIKTKEMFLTTELEEHK 969
Query: 970 ADNLKDN-RQSDDITRALDMLEAVEK-LNQHYK--AAIHLPTVRTPSQIKKFYEPVMETE 1025
ADN +N + + + + +E+ +N YK AA + ++ +++K+ +
Sbjct: 970 ADNWLENVKAHEPVPVQSAYKDEIERFMNYKYKDVAATEIRAKQSVTELKRQFSLQDSWS 1029
Query: 1026 GVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAEL 1085
+++ +Q K + P+F ++ K T +G+++H LMQ + L+ + S +D+ + L +
Sbjct: 1030 DTSILK-EFQ-KVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLTYKPSEKDLTSLLQSM 1087
Query: 1086 S----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAML--------QADP 1133
+ E KAI + +I+ FF S LG+ + +D+V RE PF+ L Q+D
Sbjct: 1088 QEKDILTEAQIKAINIKQIMGFFD-SPLGETVLQKSDQVKREVPFSYLLPVAKLYKQSDL 1146
Query: 1134 ASGEDYVVRGIIDGYILFDNRIVLFDYKTDK----FTNSQA----IKERYRGQMTLYAQA 1185
E +++G++D I ++ I L DYKTDK + N +A +KERY+ Q+ LYA+A
Sbjct: 1147 E--EHVLIQGVVDSMIEEEDAITLIDYKTDKIEGRYANWEAAEKVMKERYQIQIKLYAEA 1204
Query: 1186 LSQSYNIQQVDSYLILLGGEKLEVVEI 1212
+ + ++YL G+ + + I
Sbjct: 1205 IQAITGKKVSNAYLYFFDGQHICQINI 1231
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 74/212 (34%), Positives = 125/212 (58%), Gaps = 10/212 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T +Q +AI +G NILV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLVDETGNLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D++ L +Q+ L A I T+ +F +++ ++ + I P
Sbjct: 75 EMKYRIGKSLEEALSQNPDSS---HLKKQVALLNYASISTLHSFCLEIIRKHYFEADIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NFR+++ E +++++V ++L + E F LV +F G+R D+ +I K+Y
Sbjct: 132 NFRLIE-PIESSMIRDEVLEELLEKEYSIANNEAFFHLVESFTGDRTDAE-LHMLISKLY 189
Query: 206 DFSQATDNPQRWLLENFLKGANTYKDFSAIPE 237
DFS+A NP W LE + +T KD ++I E
Sbjct: 190 DFSRANPNPDLW-LEQMVNFYDT-KDINSITE 219
>gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
Length = 1167
Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats.
Identities = 361/1245 (28%), Positives = 598/1245 (48%), Gaps = 153/1245 (12%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T EQ+ AI + G +LVSA+AG+GKT V++ER++ ++L V ID+L + TFT AAG
Sbjct: 5 TAEQMRAITSRGNALLVSAAAGAGKTSVLVERVLSRVLTDTPPVDIDRLLVVTFTEAAAG 64
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KERL TE L+ N+ + EQL L ADI T+ +F K++ +YG G
Sbjct: 65 EMKERLG---TELLKRLNEDPGNSRILEQLELLPVADISTLHSFCHKIIRKYGRVCGYET 121
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
F IL+ E LKN V +++ + Y GD+ ELF L + + K+ N +++I +
Sbjct: 122 KFAILEGPRET-YLKNKVLEEILEERYEKGDR-ELFALL--EYLNDEKNDRNLKELILNL 177
Query: 205 YDFSQATDNPQRWLLE-------NFLKGANT--YKDFSAIPEQEVKDFLNTL-------- 247
Y FS++ P++WLL+ N+ + +T Y++ + E ++ L L
Sbjct: 178 YHFSRSNPEPEKWLLDSLNLFNGNWERFEDTFWYREIKSSTEMWLEYILELLGRAKSVAE 237
Query: 248 ---QETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGK 304
Q A +L D+E + + AK Y+ + + Q++ F + G+G
Sbjct: 238 KYGQARAFSLL-AEDMEKVRGLYAK--LNEGYEAAKQYLSQVK-----FGTFSWGRGVG- 288
Query: 305 LANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTL 364
D A + +K F R + L T+ Y D PL+++++
Sbjct: 289 -GKDEAKDLRDKAKEQFETIKKRYFSWEAGNFR--EELRTLTSYLD---PLVKLVR---- 338
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
+FS++Y + K + +FSD+ H+A+ IL+ R+L +KY E++VDEYQD N QE
Sbjct: 339 EFSRKYQEEKRKHGFADFSDLEHWALDILKSG-VYRELR-EKYVEILVDEYQDINGLQEE 396
Query: 425 MLELLS-NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+L +S +G+N FMVGD+KQSIYRFR A P+IF +K++DF + K I L NFRS+
Sbjct: 397 ILTYVSRDGQNLFMVGDVKQSIYRFRWARPEIFLKKYEDFTDE----KKIELSLNFRSRE 452
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQ--NQ 541
E++ N +F +M + V E+ YD+ L G A +P ++ + + K ++ N
Sbjct: 453 EIIATVNFIFKQIMKKRVAELSYDEKAFLKKG--ADYLPNANCFAELHLIEGKPEEDINS 510
Query: 542 DLAVEDDSNQISLGEVKLVAKEIIRLHNE------------EKVQFEDITLLVSSRTRND 589
+ E+D + E +LVA +I++L E +Q+ DI +L S + +
Sbjct: 511 NGEPEEDLTAVHR-EARLVAAKILKLKEEGFKVFDRETKEFRPLQYRDIVILSRSLSNSS 569
Query: 590 GILQT-FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
I Q GIP+ +G ++L S E+++M L+ IDNP D L A+L SP+
Sbjct: 570 NIWQEELTRAGIPVYVEGA-GSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCSPVAGLT 628
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
++L ++ + P+ LY+ ++N G+ + LS K F E + +++ S
Sbjct: 629 YEELWQVR-KEYPEGL---LYDALKNKSLGK--------DELSVKSQKFLELLVEFQKLS 676
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
SL +L+ +IY + G+ P E RQANL L A +F + G+ F+ +
Sbjct: 677 RQISLAELVNEIYRKTNLPEIFGAYPGGEVRQANLKLLHDLAVDFAEINGGGIYNFLTFL 736
Query: 769 DKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSR 828
+ E+++ + + V +M++HKSKGLEF VF++ + K+F D ++ + L
Sbjct: 737 SQAAESEDFSPAKLIGEADDVVRVMSVHKSKGLEFPVVFVVGLGKRFKF-DYSNTVFLHS 795
Query: 829 QNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSE 888
G G K+ P ++ ++ Q+ +R TL+E+MR+LYVA+TR+
Sbjct: 796 DLGFGPKFFD-----------PEKRIRRHSIASQILSERMRRETLAEEMRILYVALTRAR 844
Query: 889 KKLYLVG--KGSQEKL-GDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAAD----- 940
+KL LVG K +K+ G Q ++ + L F DW+ + +D
Sbjct: 845 EKLILVGTVKNLAKKMAGWQSQTEALKDTLSDGQIARAGNFLDWIGPVVFREGSDLPDCL 904
Query: 941 --ELHFKTSFITDE--DLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLN 996
E+H + I E +L E L + + + T A + N
Sbjct: 905 KVEVHPQQEKIEGEQWELPEVLRVKLLTKTPFTEE-----------TDYTGQFRAGLEFN 953
Query: 997 QHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTAL 1056
LP + S +K+ V T+ V S + + + LP +D L
Sbjct: 954 YPGLKIAKLPAKMSVSDLKE----VFSTDDV----ISLEDEDEVFLPGVY---FEDGAML 1002
Query: 1057 GSSVHELMQRLHLSEQVSLEDILTALAELSVEENV-----KKAIQVDKILHFFQTSQLGK 1111
G HE ++R+ +S L A E V E V ++ + KI F T LG+
Sbjct: 1003 GIVYHEFLRRIDFQGDLSASG-LKAQGETLVAEGVLPPESREMLDFTKIARIFATP-LGQ 1060
Query: 1112 LIQANADKVYREAPFAM-LQAD----PASG--EDYVVRGIIDGYILFDNRIVLFDYKTDK 1164
I A ++Y E PF + ++A A+G E +VRG+ID L ++ + D+KTD+
Sbjct: 1061 RI-LRAREIYPEFPFTLGVKAGEIYPEATGFSEKILVRGVIDLLALEEDGFFIVDWKTDR 1119
Query: 1165 FTN---SQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEK 1206
T ++ +KE Y GQ+ LYA+A+ + + + YL + EK
Sbjct: 1120 VTGDILNERLKE-YAGQLNLYARAVEEITGKKVKEKYLYFINLEK 1163
>gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51]
gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1392
Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats.
Identities = 307/998 (30%), Positives = 470/998 (47%), Gaps = 145/998 (14%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K TP Q AI G +LV+A+AGSGKT V+++R+ +I V +D+ + TFT A
Sbjct: 5 KWTPAQQAAIDLKG-QLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ K + E L + A + L +Q L A I T+ +F +L+ QY Y + +
Sbjct: 64 AAEMRERIGKALDEALFGAAEPAQVEHLLQQRALLYRASITTLHSFCMELIRQYFYLIEL 123
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FR+ D++E DLL+ D +DLF Y G++ F LV F +R D I+ +
Sbjct: 124 DPAFRV-ADEAEADLLRQDTLEDLFEAY-YGEETPAFQSLVDAFGTDRDDQPLMASIL-R 180
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPE--------QEVKDFLNTLQETALALR 255
+++F+ + +P WL L A + + E Q V+D ++E + L
Sbjct: 181 LHEFAMSQVHPGEWL--EHLPAAYDWHSLDDLMESPWGQVVRQGVRD---KVEEGLILLE 235
Query: 256 DVTDLED-------YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGL--GKLA 306
L + Y V + R + D F S GL G
Sbjct: 236 RAYRLAELPGGPVHYLPVLEDDQSRLGFLREMAEKGTWSDIETAFKSAAAFPGLPRGSKK 295
Query: 307 NDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQ-------VL 359
N +LI N + +L +K+ DQ LP L L
Sbjct: 296 NLPDSLIDEENSKRLREESKKARDEAKKKLEEIKNTVFSVPLTDQ-LPFLNKMGELVGTL 354
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID---KYHEVMVDEYQ 416
T F+++Y +AK Q N +FSD+ H+A+Q+L ++ ++ + Y EV+VDEYQ
Sbjct: 355 AQVTQHFAREYQKAKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQ 414
Query: 417 DNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGK- 471
D N QER+L+L+S N FMVGD+KQSIYRFR ADP +F +K+ +F + E G
Sbjct: 415 DINPVQERILQLVSRQEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGA 474
Query: 472 ----LILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS---SAQKIPYP 524
+I L +NFRS+ EV+ N +F +M E GEI+YD+ L G+ S ++
Sbjct: 475 APNLVIDLNQNFRSRPEVIQGINYLFYQIMTEGAGEIIYDEQAALRPGAKFVSDGELRTA 534
Query: 525 QNETQVLIYDTKD-----------------------------QQNQDLAVEDDSNQISLG 555
+ +V ++D K +QN++ DD + +
Sbjct: 535 EGPIEVHLFDPKAIDLSLGQKRGAEDAATGADSPAKGEGEEFEQNREPESGDDESSLEEA 594
Query: 556 EV-------------KLVAKEIIRLHNEE-----KVQFEDITLLVSSRTRNDGIL-QTFD 596
E K+V + ++H++E VQ+ DI +L+ S + + F
Sbjct: 595 ETARIEARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRSLASVASVYAEEFQ 654
Query: 597 DYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA 656
GIP+ + Y + EV +L L+ IDNP D A+LRSP+ + +L +L
Sbjct: 655 KAGIPVYAE-TNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLR 713
Query: 657 LQNLP---------------DQHKQNL-YEKMENARNGQGQ----------QVQLITEA- 689
LP D H+Q +E R G+ +V+ I E
Sbjct: 714 -SLLPQGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETS 772
Query: 690 --LSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALA 747
+ K+DAFF WR S SL DL+W +Y D Y YVG+LP QRQANL L
Sbjct: 773 PEIKEKVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLY 832
Query: 748 LRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYV 806
RA +E T ++GL RF+R ++K DL + + K N V +T+H SKGLEF V
Sbjct: 833 DRACRYEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVV 892
Query: 807 FILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKR 866
FI + KKF+ + ++S L+L GVGI I D++ ++ P+V + Y + +R
Sbjct: 893 FIAGLGKKFNTRSLSSQLLLHSHLGVGIPLI-DIENQVR---YPSV------IQYAVKER 942
Query: 867 ELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGD 904
L L+E++R+LYVA+TR +++L+L G Q KL +
Sbjct: 943 -LWQEALAEELRILYVALTRGKERLFLFGH--QHKLAE 977
>gi|109644814|ref|ZP_01368734.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
gi|109642763|gb|EAT52316.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
Length = 1392
Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 307/998 (30%), Positives = 470/998 (47%), Gaps = 145/998 (14%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K TP Q AI G +LV+A+AGSGKT V+++R+ +I V +D+ + TFT A
Sbjct: 5 KWTPAQQAAIDLKG-QLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAA 63
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ER+ K + E L + A + L +Q L A I T+ +F +L+ QY Y + +
Sbjct: 64 AAEMRERIGKALDEALFGAAEPAQVEHLLQQRALLYRASITTLHSFCMELIRQYFYLIEL 123
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
P FR+ D++E DLL+ D +DLF Y G++ F LV F +R D I+ +
Sbjct: 124 DPAFRV-ADEAEADLLRQDTLEDLFEAY-YGEETPAFQSLVDAFGTDRDDQPLMASIL-R 180
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPE--------QEVKDFLNTLQETALALR 255
+++F+ + +P WL L A + + E Q V+D ++E + L
Sbjct: 181 LHEFAMSQVHPGEWL--EHLPAAYDWHSLDDLMESPWGQVVRQGVRD---KVEEGLILLE 235
Query: 256 DVTDLED-------YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGL--GKLA 306
L + Y V + R + D F S GL G
Sbjct: 236 RAYRLAELPGGPVHYLPVLEDDQSRLGFLREMAEKGTWSDIETAFKSAAAFPGLPRGSKK 295
Query: 307 NDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQ-------VL 359
N +LI N + +L +K+ DQ LP L L
Sbjct: 296 NLPDSLIDEENSKRLREESKKARDEAKKKLEEIKNTVFSVPLTDQ-LPFLNKMGELVGTL 354
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYID---KYHEVMVDEYQ 416
T F+++Y +AK Q N +FSD+ H+A+Q+L ++ ++ + Y EV+VDEYQ
Sbjct: 355 AQVTQHFAREYQKAKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQ 414
Query: 417 DNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGK- 471
D N QER+L+L+S N FMVGD+KQSIYRFR ADP +F +K+ +F + E G
Sbjct: 415 DINPVQERILQLVSRQEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGA 474
Query: 472 ----LILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS---SAQKIPYP 524
+I L +NFRS+ EV+ N +F +M E GEI+YD+ L G+ S ++
Sbjct: 475 APNLVIDLNQNFRSRPEVIQGINYLFYQIMTEGAGEIVYDEQAALRPGAKFVSDGELRTA 534
Query: 525 QNETQVLIYDTKD-----------------------------QQNQDLAVEDDSNQISLG 555
+ +V ++D K +QN++ DD + +
Sbjct: 535 EGPIEVHLFDPKAIDLSLGQKRGAEDAATEVDSPAKGEGEEFEQNREPESGDDESSLEEA 594
Query: 556 EV-------------KLVAKEIIRLHNEE-----KVQFEDITLLVSSRTRNDGIL-QTFD 596
E K+V + ++H++E VQ+ DI +L+ S + + F
Sbjct: 595 ETARIEARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRSLASVASVYAEEFQ 654
Query: 597 DYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA 656
GIP+ + Y + EV +L L+ IDNP D A+LRSP+ + +L +L
Sbjct: 655 KAGIPVYAE-TNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLR 713
Query: 657 LQNLP---------------DQHKQNL-YEKMENARNGQGQ----------QVQLITEA- 689
LP D H+Q +E R G+ +V+ I E
Sbjct: 714 -SLLPQGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETS 772
Query: 690 --LSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALA 747
+ K+DAFF WR S SL DL+W +Y D Y YVG+LP QRQANL L
Sbjct: 773 PEIKEKVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLY 832
Query: 748 LRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYV 806
RA +E T ++GL RF+R ++K DL + + K N V +T+H SKGLEF V
Sbjct: 833 DRACRYEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVV 892
Query: 807 FILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKR 866
FI + KKF+ + ++S L+L GVGI I D++ ++ P+V + Y + +R
Sbjct: 893 FIAGLGKKFNTRSLSSQLLLHSHLGVGIPLI-DIENQVR---YPSV------IQYAVKER 942
Query: 867 ELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGD 904
L L+E++R+LYVA+TR +++L+L G Q KL +
Sbjct: 943 -LWQEALAEELRILYVALTRGKERLFLFGH--QHKLAE 977
>gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560]
gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560]
Length = 1220
Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats.
Identities = 344/1252 (27%), Positives = 615/1252 (49%), Gaps = 151/1252 (12%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTVKA 83
K T +Q + I T NILVSA+AGSGKT V++ERI+ I ++QL + TFT A
Sbjct: 2 KWTDKQQKVIDTRDRNILVSAAAGSGKTAVLVERIIKMITDEENPTDVNQLLVVTFTRAA 61
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E+KER+ + + E++ N L + +QL + A+I T+D+F ++V + +
Sbjct: 62 ASEMKERIREAL-EKMEEDNPNDLN--VQKQLSLIHNANISTIDSFCARVVKDNFDKIDL 118
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
PNFRI D++E ++L++D+ +++ +Y E F +L ++ K S + ++I +
Sbjct: 119 DPNFRI-ADENEIEMLQSDIVEEMLEEYYLAADDE-FMELAEKYSTG-KTSDSIGELILR 175
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLN------------TLQETA 251
+Y F+ P++W+ E A + D S+ E E ++ L +
Sbjct: 176 MYKFASGQIEPEKWIKE-----AISVYDVSSKEEMEQSKWMQGYLELQKNRLEGILSQLN 230
Query: 252 LALRDVTDLEDYKQVTAKGTPT-------AAYQRHLKMIEQLQDWVLHFDSLYGRDGLGK 304
+AL +++ ED + TP + + M +LQ+ + + G+ +
Sbjct: 231 IAL-TISESEDGPKCAKALTPIIDKLQEITESRTYSAMQSELQN--IPSTRVSGKKDCNE 287
Query: 305 LANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTL 364
+ I ND T A + L ++ L L +F+ ++ ++ + TL
Sbjct: 288 RKKEQVKAIK--NDATKA------IKDLTTKQFNLT-LNQVFESICETKSSVEYIGKLTL 338
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMVDEYQ 416
+F K+ + K ++ +F+D A FA+ IL E D L ++ E+M+DEYQ
Sbjct: 339 EFMKRLKEQKEEKGIMDFNDQAFFALHILNEYDKDGNLVPSETAKNMATQFKEIMIDEYQ 398
Query: 417 DNNHTQERMLELLSNG---RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKL- 472
D+N QE +L ++ G N FMVGD+KQSIYRFR A+P++F +K+ F + P +
Sbjct: 399 DSNIIQEAILSAITKGFGINNMFMVGDVKQSIYRFRNAEPKLFLEKYNSFSDDPSADSVK 458
Query: 473 ILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ-NETQVL 531
I+L +NFRS+ EV+++ N +F +M E VG I Y + + LV G+ + P Q N T+ +
Sbjct: 459 IVLDKNFRSRREVIESVNFLFDFVMHEEVGGIDYKNGNGLVLGADYDEPPAGQDNLTEFV 518
Query: 532 IYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGI 591
+ + D+ ++ V +I+ E L E + + V++ DI +L+ S N I
Sbjct: 519 MVEGGDKSDEAAYVARKIKEITNPETGLKITE--KGKDMRPVRYGDIVILLRSMKDNSDI 576
Query: 592 L-QTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDED 650
+ ++ GIP+ + + Y K++EVM + + L IDNP D L A+L SPMF FD +
Sbjct: 577 YREQLENNGIPVFAES-KTGYYKTMEVMTITNMLSIIDNPRQDIPLAAVLTSPMFGFDSN 635
Query: 651 DLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL 710
LA + +N+ ++ Y+ +E + G V+L T +L F T +R
Sbjct: 636 QLAIIKTENVC----ESFYDCVEQ-YSLSGSDVELRT-----RLTEFLNTLTKFRNMVPY 685
Query: 711 NSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
++YDLI + ++ Y Y+ S+P ++R N+ AL +A +++T +KGL F+R I+K
Sbjct: 686 TTVYDLINTLLDETGYAFYIRSMPGGKKRLLNIQALKEKAVAYDETSYKGLFNFLRYIEK 745
Query: 771 ILENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
I D + V N V +M+IHKSKGL+F VF+ N + + ++ + L+
Sbjct: 746 IQYLAKDDGEASTVNENDNIVRIMSIHKSKGLQFPVVFLCNTNG--TSKNEANQLVSGAD 803
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
+GI I + +L+ K P +K T NK E ++E +R+LYVA+TR+++
Sbjct: 804 GNIGIDCINN---KLKTKQTPLLK----TYIRMSNKEE----DVAETLRILYVALTRAKE 852
Query: 890 KLYLVG--KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT- 946
KLY+ G K +++++G+ +N+ L + + D + A EL KT
Sbjct: 853 KLYITGLVKNAEKQIGEFESQIYDNSEL--------MLYND----VIGAKTIMELIGKTI 900
Query: 947 -------SFITDEDLTE--------DKMGSLEAEQAYD------ADNLKDNRQSDDITRA 985
TD+D TE D ++ E+ D A+++ D+ + + +
Sbjct: 901 GRNKAFDCVRTDKDATECGNPLYDKDSFIKVKVEEQPDVILGLAAEDITDSIKKETMLME 960
Query: 986 LDML-----EAVEKLNQHYK------AAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSY 1034
+ L ++EKL Q ++ I L + + ++IKK + + + E + Q
Sbjct: 961 MKQLANKENTSIEKLFQRFQFQYPYIEDITLHSKASVTEIKKQSQGMEQEEEQDAFQAFG 1020
Query: 1035 QTKPKFE-LPQFSKKAKQDPTAL-----GSSVHELMQRLHLS----EQVSLEDILTALAE 1084
+ E +P F K+ +P L G++ H + + L + Q +++ ++ +
Sbjct: 1021 EEVELPEIIPDFEKEDIDEPQYLTGAMRGTAYHRIFELLDMELEEYNQETVKKMIDGFVD 1080
Query: 1085 LSVEENVKKAIQVDK-ILHFFQTSQLGKLIQANA-DKVYREAPFAM------LQADPASG 1136
+ + + A + K I+ F ++ ++ +A A +++YRE F M + ++ S
Sbjct: 1081 AGLIDRMGAASVMRKDIIDFTKSDLFRRMKKAYANNQLYREQHFLMGVPACEINSNTTSK 1140
Query: 1137 EDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQ 1188
E +++GIID + +++ V+ DYKTDK + + ERY Q+ Y A+ Q
Sbjct: 1141 ETMIIQGIIDLCFVENDKYVIVDYKTDKVDTMEELVERYHVQLECYKLAIEQ 1192
>gi|28210435|ref|NP_781379.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
gi|28202872|gb|AAO35316.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
Length = 1147
Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats.
Identities = 316/1178 (26%), Positives = 565/1178 (47%), Gaps = 147/1178 (12%)
Query: 139 YTLGISPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNF 197
+ + I P FR+ D++E LLK + +++F + Y G+ + F +L+ +F G KD
Sbjct: 7 HIIDIDPTFRV-ADETETILLKQEALEEVFENVYYDGNYTDEFKELLNSFGG--KDDRKL 63
Query: 198 RQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDV 257
+++ +Y+FSQ+ P +WL E ++G N KD+ DF ++ T L
Sbjct: 64 SELVQNLYNFSQSLSWPFKWLNEK-VEGFNIEKDY---------DFGKSIWGTTLKENIK 113
Query: 258 TDLEDYK-QVTAKGTPTAAYQRHL-KMIEQLQDWVLHFDSLYGR-------DGLGKLAND 308
+LE K Q Y+ L IE +++ + + L G DGL L D
Sbjct: 114 IELEGVKNQFQRSLNILKEYEEELVDYIEVIEEELNYIKKLLGEHEDNNIIDGL--LCFD 171
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHL--------ETIFKYQDQSLPLLQVLQ 360
++ L V K + + L E + K P ++ L
Sbjct: 172 LSRLPGKRLKGEVKDTKDKAIKVRDKAKESINKLKEDIGLGYENVEKNMKDLYPRMKCLI 231
Query: 361 SFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL--------YIDKYHEVMV 412
+ F+ +Y + K ++N +F+DI HFA++IL + D ++ Y +K+ EV+V
Sbjct: 232 ELVMKFTMEYDKRKREKNIIDFNDIEHFALEILTDFDKEEKVNPSSVALEYRNKFEEVLV 291
Query: 413 DEYQDNNHTQERMLELLSNGRNR--------------FMVGDIKQSIYRFRQADPQIFNQ 458
DEYQD+N QE +L +S N FMVGDIKQSIYRFRQA P++F +
Sbjct: 292 DEYQDSNFVQEAILNSISRQNNLQSKIEDEKLIIPNLFMVGDIKQSIYRFRQAKPELFLR 351
Query: 459 KFKDFQEH--PEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS 516
K+ ++ E ++ K+ L K NFRS+ +++ N +F +M + VGE+ Y + +L G+
Sbjct: 352 KYNNYSEEVSSKYRKIKLFK-NFRSRKNIIEGVNFIFKQIMSKNVGELEYGEEEKLNYGA 410
Query: 517 SAQKIPYPQN-ETQVLIYDTKDQQNQD-------LAVEDDSNQISLGEVKLVAKEIIRLH 568
+++ ++ E + I+ ++N + L E++ + I L E ++V K I L
Sbjct: 411 DFKELEEGKDLERDIEIHLMDKEENIEPYTEELGLEEEENIDNIQL-EARMVGKVINNLI 469
Query: 569 NEE----------------KVQFEDITLLVSSRTRNDGIL-QTFDDYGIPLVTDGGEQNY 611
+E KVQ+ DI +L+ + + + + ++ GIP+ D Y
Sbjct: 470 KDEESNSFMIQDKSTKEYRKVQYRDIVILMRATSAMANVFTEELNNVGIPVFADT-SSGY 528
Query: 612 LKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEK 671
+++E+ ++ L+ +DNP D ++++LR P+F+F +D+ + L N ++YE
Sbjct: 529 FETIEIKTIMSILQIVDNPRQDIPMLSVLRCPIFSFSPEDIIDIRLIN----RDISIYEC 584
Query: 672 MENARNGQ------GQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
+E +N + + I E L ++ +F E WR+ S+ S+ IW +Y +
Sbjct: 585 LEKIKNKEPCLEEEKVYIDEINEELKERIISFLEKLNLWRDNSIHMSIDQFIWYLYTETG 644
Query: 726 YYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-A 784
YY YVG++P QRQANL L RA +E T +KG FI I+K+ D+ ++
Sbjct: 645 YYGYVGAMPGGVQRQANLRLLFERAKQYENTSYKGFFNFISFINKLRNTSGDMGSAKILG 704
Query: 785 LPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEEL 844
+N V +M+IHKSKGLEF V + + F++QD+ ++ Q G G +Y+ D+ +
Sbjct: 705 ENENVVKIMSIHKSKGLEFPVVIMAGTGRGFNLQDIRKDILFHHQLGFGPEYV-DLDK-- 761
Query: 845 EEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGSQEKL 902
K+ T+ ++ ++++L T SE+MR+LYVA TR+++KL + G K ++ +
Sbjct: 762 --------KIKYPTIMKKIIAQKIKLETFSEEMRILYVAFTRAKEKLIITGSVKNIEKSM 813
Query: 903 GDQ-YDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDE---DLTEDK 958
+ + G LP + + DW++ + + H + F E + ++
Sbjct: 814 SEWCFTGGEGGKRLPEYELIKSKNYLDWIMPTLTRHICFQKHIRRQFPEIEIKNGIEDNS 873
Query: 959 MGSLEAEQAYD--ADNLKDNRQSDDIT----------RALDMLEAVEKLNQHYK--AAIH 1004
SL+ + D L++ ++ D I + + E ++LN YK A
Sbjct: 874 CWSLQLWHKKELLEDKLEETKERDIIKEIEWNKEKSCKNIHEEEVEKRLNWKYKYIKASE 933
Query: 1005 LPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTA-LGSSVHEL 1063
+P + S+IK +E +++T + + + F PQF ++ K+ +A +G+ H +
Sbjct: 934 IPAKLSVSEIKSRFE-LLDTGNSDNL---IEENIFFRKPQFLEEFKKFSSAEIGTFTHLV 989
Query: 1064 MQRLHLSEQVSLEDILTALAELSVEENVK----KAIQVDKILHFFQTSQLGKLIQANADK 1119
+Q + S+EDI + EL E + K I + KI +F ++ + ++ +D
Sbjct: 990 IQHIDFQRTNSIEDIENQIEELIKREFLTKEQAKVINIKKIYNFIKSPIVDRI--KKSDN 1047
Query: 1120 VYREAPFAMLQAD----PASGEDY-----VVRGIIDGYILFDNRIVLFDYKTDKFTNSQA 1170
V RE F + + P+ E Y +++G+ID Y N +++ DYKTD + +
Sbjct: 1048 VRREESFYIEMSSKDLIPSISEVYKDEKILIQGVIDLYFQEGNDLIILDYKTDYIEDIEK 1107
Query: 1171 IKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLE 1208
KE+Y Q+ Y +AL + + + YL L ++LE
Sbjct: 1108 TKEKYYLQIDYYKKALEKITGKKVKEKYLYLFNIDRLE 1145
>gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
F2365]
gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
F2365]
Length = 1235
Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats.
Identities = 274/924 (29%), Positives = 471/924 (50%), Gaps = 113/924 (12%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQIL-EENDA--IRQLYIDKYHEV 410
P ++ L F++ + + K Q +F+D+ H A++IL ++N+A + + Y ++ EV
Sbjct: 346 PDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEV 405
Query: 411 MVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++ +Q+
Sbjct: 406 LIDEYQDTNMVQETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQD 465
Query: 467 PE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G+S +P+
Sbjct: 466 GNGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTLGAS-----FPE 520
Query: 526 NE---TQVLIYDTKDQQNQ---DLAVED-DSNQISLGEVKLVAKEII---------RLHN 569
T++L+ D K +++ +L+ ++ NQ+ + + KE+I ++
Sbjct: 521 TTDMATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDNKFPIFDKKMKQ 580
Query: 570 EEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDN 629
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ IDN
Sbjct: 581 NRPIQYRDIVILARAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVIDN 639
Query: 630 PLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEA 689
P D L A+LRSP+ +E++L ++ + + Y+ + ++ +
Sbjct: 640 PYQDIPLAAVLRSPIIGLNEEELGQVRMA----KKNGYFYDALLTYKDTTVSET------ 689
Query: 690 LSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALR 749
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL R
Sbjct: 690 -ADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDR 748
Query: 750 ADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFI 808
A+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 749 ANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIV 808
Query: 809 LNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKRE 867
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE
Sbjct: 809 SGLSRKFNMRDIYSKTLLDKDYGFASNY-----RDIEKMIVYPTI---MQQAMKQKKSRE 860
Query: 868 LRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYL 924
+ ++E+MR+LYVA+TR+E+KL L EK + K + LP + R
Sbjct: 861 M----IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAK 916
Query: 925 TFQDW-------------LLAIEAAYAAD-------ELHFKTSFITDEDLTEDKMGSLEA 964
+ DW LL E E+ K F+T+E + + LE
Sbjct: 917 CYLDWIGNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLE- 975
Query: 965 EQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMET 1024
N+K+++ + D ++ + A + ++ +++K+ + + ++
Sbjct: 976 -------NIKEHQPIPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFS-LQDS 1027
Query: 1025 EGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAE 1084
+ +Q K + P+F ++ K T +G+++H LMQ + L Q + ED+ L
Sbjct: 1028 WSDTTLLKEFQ-KVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKEDLEQLLQT 1086
Query: 1085 LS----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS----- 1135
+ + E KAI + ++L FF+ SQLGK + D V RE PF+ L P S
Sbjct: 1087 MREKDILTEAQLKAINIKQVLGFFE-SQLGKTMLQKKDLVKREVPFSYLL--PVSELYEK 1143
Query: 1136 ---GEDYVVRGIIDGYILFDNRIVLFDYKTDK----FTNSQA----IKERYRGQMTLYAQ 1184
E +++G++D I + I L DYKTDK ++N +A +KERY Q+ LYA+
Sbjct: 1144 VDIDERVLIQGVVDSMIEEEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAK 1203
Query: 1185 ALSQSYNIQQVD-SYLILLGGEKL 1207
A+ Q+ + ++VD +YL G+ +
Sbjct: 1204 AI-QAISGKKVDAAYLYFFDGQHI 1226
Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 114/195 (58%), Gaps = 8/195 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+ L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALAQNPDST---HLKRQVALLNYASISTLHSFCLEIIRKYYFDADIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NFR+++ E +++++V ++L + + E F LV +F G+R D+ +I K+Y
Sbjct: 132 NFRLIE-PIESSMIRDEVLENLLEQEYSIENNEPFFHLVESFTGDRSDAE-LHALISKLY 189
Query: 206 DFSQATDNPQRWLLE 220
DFS+A +P WL E
Sbjct: 190 DFSRANPDPNIWLEE 204
>gi|153168176|ref|ZP_01928186.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017]
gi|133726423|gb|EBA28121.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017]
Length = 1234
Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats.
Identities = 275/925 (29%), Positives = 472/925 (51%), Gaps = 116/925 (12%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQIL-EENDA--IRQLYIDKYHEV 410
P ++ L F++ + + K Q +F+D+ H A++IL ++N+A + + Y ++ EV
Sbjct: 346 PDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEV 405
Query: 411 MVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++ +Q+
Sbjct: 406 LIDEYQDTNMVQETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQD 465
Query: 467 PE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G+S +P+
Sbjct: 466 GNGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTLGAS-----FPE 520
Query: 526 NE---TQVLIYDTKDQQNQ---DLAVED-DSNQISLGEVKLVAKEII---------RLHN 569
T++L+ D K +++ +L+ ++ NQ+ + + KE+I ++
Sbjct: 521 TTDMATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDNKFPIFDKKMKQ 580
Query: 570 EEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDN 629
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ IDN
Sbjct: 581 NRPIQYRDIVILARAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVIDN 639
Query: 630 PLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEA 689
P D L A+LRSP+ +E++L ++ + + Y+ + ++ +
Sbjct: 640 PYQDIPLAAVLRSPIIGLNEEELGQVRMA----KKNGYFYDALLTYKDTTVSET------ 689
Query: 690 LSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALR 749
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL R
Sbjct: 690 -ADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDR 748
Query: 750 ADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFI 808
A+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 749 ANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIV 808
Query: 809 LNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKRE 867
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE
Sbjct: 809 SGLSRKFNMRDIYSKTLLDKDYGFASNY-----RDIEKMIVYPTI---MQQAMKQKKSRE 860
Query: 868 LRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYL 924
+ ++E+MR+LYVA+TR+E+KL L EK + K + LP + R
Sbjct: 861 M----IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAK 916
Query: 925 TFQDW-------------LLAIEAAYAAD-------ELHFKTSFITDEDLTEDKMGSLEA 964
+ DW LL E E+ K F+T+E LE
Sbjct: 917 CYLDWIGNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNE---------LEK 967
Query: 965 EQAYD-ADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVME 1023
+ + DN+K+++ + D ++ + A + ++ +++K+ + + +
Sbjct: 968 TETVNWLDNIKEHQPIPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFS-LQD 1026
Query: 1024 TEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALA 1083
+ + +Q K + P+F ++ K T +G+++H LMQ + L Q + ED+ L
Sbjct: 1027 SWSDTTLLKEFQ-KVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKEDLEQLLQ 1085
Query: 1084 ELS----VEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS---- 1135
+ + E KAI + ++L FF+ SQLGK + D V RE PF+ L P S
Sbjct: 1086 TMREKDILTEAQLKAINIKQVLGFFE-SQLGKTMLQKKDLVKREVPFSYLL--PVSELYE 1142
Query: 1136 ----GEDYVVRGIIDGYILFDNRIVLFDYKTDK----FTNSQA----IKERYRGQMTLYA 1183
E +++G++D I + I L DYKTDK ++N +A +KERY Q+ LYA
Sbjct: 1143 KVDIDERVLIQGVVDSMIE-EETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYA 1201
Query: 1184 QALSQSYNIQQVD-SYLILLGGEKL 1207
+A+ Q+ + ++VD +YL G+ +
Sbjct: 1202 KAI-QAISGKKVDAAYLYFFDGQHI 1225
Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 114/195 (58%), Gaps = 8/195 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+ L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALAQNPDST---HLKRQVALLNYASISTLHSFCLEIIRKYYFDADIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NFR+++ E +++++V ++L + + E F LV +F G+R D+ +I K+Y
Sbjct: 132 NFRLIE-PIESSMIRDEVLENLLEQEYSIENNEPFFHLVESFTGDRSDAE-LHALISKLY 189
Query: 206 DFSQATDNPQRWLLE 220
DFS+A +P WL E
Sbjct: 190 DFSRANPDPNIWLEE 204
>gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
Length = 1179
Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats.
Identities = 344/1238 (27%), Positives = 576/1238 (46%), Gaps = 136/1238 (10%)
Query: 25 KQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTV 81
K+ T Q AI ++LVSA+AGSGKT V+++R+++++ R D+L I TFT
Sbjct: 3 KRNWTESQRWAISARNGSLLVSAAAGSGKTAVLVQRVIERLTDPERPCDADRLLIVTFTN 62
Query: 82 KAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
AA E+KER+ I E L+ D A Q +Q+L L A I T+ +F +LV + Y L
Sbjct: 63 AAAAEMKERISAAIGELLQA--DPANAQLQRQQIL-LNRAHISTIHSFCNELVRENFYKL 119
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQII 201
ISP+FRI D +E LL+ + D++ + + F L F+ R D + +
Sbjct: 120 DISPDFRI-SDSAEMTLLRQEAMDEVMEELYAKEDGS-FQGLSDAFSFGR-DDRRLMETV 176
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQET-----ALALRD 256
+YDF ++ P+RWL E K A D A Q K L+ Q AL
Sbjct: 177 ETLYDFIRSHPFPERWLDE---KEAMYRADLPAGETQWGKIILDYAQSAVDYMAALTQNS 233
Query: 257 VTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATL--IP 314
++ +ED ++++A A+ L +E+L+D ++ D + R G A A L +
Sbjct: 234 LSVMEDDEKISA--AYREAFLEDLSSLEELRDRIVSKD--WNRIAAGVRAFGFAKLKALR 289
Query: 315 SGND----VTVAGVKYPVFRSLHSRLRGLKHLETIFKYQD--QSLPLLQVLQSFTLDFSK 368
D + +AG + V +S+ +L L + QD + +P++ L FS+
Sbjct: 290 GYRDDPLKLRIAGSRDTV-KSVFKKLASLFQEDEEKCRQDIRRLVPVVSELFGAVKRFSR 348
Query: 369 QYLQAKMQENAFEFSDIAHFAIQIL--EENDAIRQ-----LYIDKYHEVMVDEYQDNNHT 421
+ + K Q+ +F D+ H+A+++L + + R+ L + + EVMVDEYQD N
Sbjct: 349 RLDEKKQQKRLADFGDLEHWALRLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDTNEA 408
Query: 422 QERMLELLS-NGRNRFMVGDIKQSIYRFRQADPQIFNQK---FKDFQ-EHPEHGKLILLK 476
Q+ + +S +N FMVGD+KQSIYRFRQA P+IF ++ + D+ E E+ + L
Sbjct: 409 QDMIFRAISREEKNLFMVGDVKQSIYRFRQAMPEIFLRRKASYPDYDPEKNEYSAKVNLD 468
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK 536
NFRS+ V D N VF LM +GE+ Y +L G+S YP+ E
Sbjct: 469 RNFRSRHGVTDGVNFVFRQLMSVEMGEMEYTGEEELTPGAS-----YPEREE-------A 516
Query: 537 DQQNQDLAVEDDSNQISLGEVKLVAKEIIRL-HNEEKVQ---------FEDITLLVSSRT 586
D + L + ++ +L E + + I + N E VQ + D +L+ +
Sbjct: 517 DTELHILTLPKGADMDTL-EAEYIGSLIASMVRNGELVQDGGKQRPAAYRDFCVLIRNAN 575
Query: 587 RNDGILQT-FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF 645
+ G+ + GIP +D + + EV V L LR +DNP+ D L+++L SP++
Sbjct: 576 AHGGVYAAKLREMGIPAWSDTA-GTFFGTPEVSVALSYLRVLDNPVQDIPLLSVLISPIW 634
Query: 646 AFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWR 705
F DDLA++ + D L + E + L A+ F E ++R
Sbjct: 635 GFTPDDLAQIRMARKGDAFYFALKDAAERP------------DVLGARCHRFLEHTEAFR 682
Query: 706 EFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI 765
+ LI ++Y Y ++ + + R NL L A ++E +G++GLS FI
Sbjct: 683 RLAATLPADRLIQRLYEATGYPAVAQAMRQGDLRLNNLRLLMKYARDYEGSGYQGLSGFI 742
Query: 766 RMIDKILENQNDLAD-VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPL 824
R ID++ E +DLA ++ N V +M+IHKSKGLEF + N ++F+ + +
Sbjct: 743 RFIDRLQEQDSDLAPAAALSESANVVRVMSIHKSKGLEFPICILANTARQFNKR--REDI 800
Query: 825 ILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
+L G+G+K +++E T+ V DT+P + E+ +SE++R+LYVAM
Sbjct: 801 LLHPALGLGMK----LRDE-------TMTVQYDTMPREAVSLEIERGGMSEELRVLYVAM 849
Query: 885 TRSEKKLYLVGK-----GSQEKLGDQY-DGKSENNHLPVADREHYLTFQDWLLAIEAAY- 937
TR+++KL ++ + KLG Q D K+ + P R +F DW+L+ +
Sbjct: 850 TRAKEKLVMLTSLDDPVKTLGKLGAQLTDSKAIS---PYVVRSAG-SFSDWILSCALRHP 905
Query: 938 AADELHFKTSFITDEDLTEDK-----MGSLEAEQAYDADNLKDNRQSDDITRALDMLEAV 992
+ L K + LTE + + + +Q + + RQ +L+
Sbjct: 906 SGGGLREKAGVLPGVMLTEGENWKILLNPVREQQETVSGETEKRRQIQADPELTALLQKR 965
Query: 993 EKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQD 1052
+A +P S++ + + + P F
Sbjct: 966 FSFVYPGEALKSVPAKVAASELAG--------------KENAKEYAAMSRPAFLTGQTMT 1011
Query: 1053 PTALGSSVHELMQ--RLHLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLG 1110
P G+++H MQ L++Q + + L + + + +A+ + KI FFQ+
Sbjct: 1012 PAERGTALHLYMQFADYRLAKQDPEKQLRFLLEKGFLTQEQAEAVSLKKIERFFQSGLYR 1071
Query: 1111 KLIQANADKVYREAPF----AMLQADPA-----SGEDYVVRGIIDGYILFDNRIVLFDYK 1161
++ Q ++ + RE F A + +P E V++G +D + ++L DYK
Sbjct: 1072 RMEQ--SENLRREIRFTVELAASEVNPGLTGQNGREPVVLQGAVDCVFEENGGLILVDYK 1129
Query: 1162 TDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQVDSYL 1199
TD Q +K RY Q++LYA AL Q+ ++ + YL
Sbjct: 1130 TDYVKEEQELKNRYCRQLSLYALALEQTTGLKVTEQYL 1167
>gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533]
gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533]
Length = 1204
Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats.
Identities = 268/899 (29%), Positives = 450/899 (50%), Gaps = 99/899 (11%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHEVMVDEYQDNNHTQE 423
K++ Q K ++N ++SD+ FA IL + + ++ Y +K++E+++DEYQD N QE
Sbjct: 350 KRFGQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQE 409
Query: 424 RMLELLSNG--RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRS 481
++ + N FMVGDIKQSIY FRQA P +F K+ + ++ + K I+L +NFRS
Sbjct: 410 NIIAAIKKKGQNNLFMVGDIKQSIYGFRQARPDLFLSKYHAYGQNDDSEK-IVLSDNFRS 468
Query: 482 QSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQ 541
V NS+F ++ G I Y QL G++ P + T +Q Q
Sbjct: 469 TQRVTKTVNSLFNPILTANFGGIDYKKEGQLQFGATYYPTDLPTASEYIF---TDKKQTQ 525
Query: 542 DLAVEDDSNQISLGEVKLVAKEIIRLHNE------------EKVQFEDITLLVSSRTRND 589
E+ +++ E+++V I +L E +++ DI ++ +R+ N
Sbjct: 526 ASFEENFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLKRPLEYSDIAIITRTRSDNL 585
Query: 590 GILQTFDDYGIPL-VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD 648
++Q F +PL VTD QNY ++ E++++++ LR IDNP D LVA+LRSP+F F
Sbjct: 586 QVMQEFAKADLPLFVTDA--QNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFK 643
Query: 649 EDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFS 708
E +LA++ ++ N Y + + + + L K F + S R F+
Sbjct: 644 EPELAQIRVKT----RSGNFYNALTSFAS--------VNSDLGQKCKNFLQQLESLRSFA 691
Query: 709 LLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+ + +LIW IY + V LP +QR+ NL +L RA ++E GFKGL +FI I
Sbjct: 692 ATHRISELIWSIYERTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751
Query: 769 DKILENQNDLADVEVALPKN-AVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
+++ +NQ DLA ++ + AV LMTIH SKGLEF VF++ + K+ +D++ +S
Sbjct: 752 ERMRKNQKDLAQPLLSDKADKAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTIS 811
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+ +G+G+ ++EK +D+L L E R L E+ R+LYV +TR+
Sbjct: 812 K-DGLGLT--------IKEK-----DYRIDSLVKSLADVEKRQQMLEEEARILYVGLTRA 857
Query: 888 EKKLYLVG-----KGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWL-LAIEAAYAADE 941
++KL LV + Q+K + D K+ N LP+ + + + D+L +E + D+
Sbjct: 858 QQKLILVASVSEMEAKQKKWESEIDQKT--NILPLIRKINAQSPLDFLGPKLEQKHEFDQ 915
Query: 942 LHFKTSFITDEDLT-----EDKMGSLEAEQAYDADNLKDNRQSDDI----TRALDMLEAV 992
T ED+T +DK+ L+ A +D + + Q DD ++ D+++ +
Sbjct: 916 --------TIEDMTLALEEQDKIYYLKF--AVQSDIEEKDEQKDDTQKLSSKMNDVVKTL 965
Query: 993 EKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETE---GVEVMQTSYQTKPKFELPQFSKKA 1049
+ A ++ S+IKK + M+TE + ++ +P E P F +K
Sbjct: 966 YNFEYPFADATKTTAYQSVSEIKKVFNDPMDTELENSRLISSSNRYLQPIDETPVFLEKQ 1025
Query: 1050 KQDPTALGSSVHELMQRLHLS---EQVSLEDILTALAELSVEENVKKAIQVDKILHFFQT 1106
K +G+++H ++Q +++LE + L EL + + L++F
Sbjct: 1026 KFTGAEIGTAMHLVLQYYDYQGDKTEINLEQEIEELVELGKLNPLMVPHLSKEALNWFVM 1085
Query: 1107 SQLGKLIQANADKVYREAPFAMLQADPASGEDY-------VVRGIIDGYILFDNRIVLFD 1159
S+ +K++RE+ F+ L D+ +V G IDGY D ++LFD
Sbjct: 1086 SEFAAEFWQKPEKLHRESQFSSLVNASELFNDFSDSAAKILVHGTIDGYFETDEGLILFD 1145
Query: 1160 YKT---DKFTNSQA---IKERYRGQMTLYAQALSQ-SYNIQQVDSYLILLGGEKLEVVE 1211
YKT DK QA IK++Y GQ+ LY QAL++ S N + + YLILL K+ V+
Sbjct: 1146 YKTDFVDKTHEEQAIDKIKKKYTGQLRLYEQALNEISENKKVIGKYLILLDARKVVPVD 1204
Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats.
Identities = 77/235 (32%), Positives = 134/235 (57%), Gaps = 13/235 (5%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
K T EQ +AI G +ILVSASAGSGKT V++ER++ +IL G + L I TFT AA E
Sbjct: 3 KFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAARE 62
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
+KER+++KI++Q+ + QFL QLL + TA+I T+D+F ++ ++ Y + + P
Sbjct: 63 MKERIKQKISDQIEKEPNN---QFLRSQLLDVDTANISTIDSFCLDVIRRFYYVIDLDPQ 119
Query: 147 FRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYD 206
F +L D+++ +LLK ++ +Y + + F NF+G+R D+ R ++ ++Y+
Sbjct: 120 FSVLTDETQAELLKERALHEIEIEYLEKNDQD-FQDFYDNFSGDR-DAEGARNLLLQLYN 177
Query: 207 FSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLE 261
N +++L N +F + + ++ L Q L ++++ DL+
Sbjct: 178 TVVTEPNYEKFL--------NNLPNFYQVQDDLIESDLWQTQIKPLLIKEIKDLQ 224
>gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 757
Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats.
Identities = 241/767 (31%), Positives = 387/767 (50%), Gaps = 72/767 (9%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
T +Q +A+ +G +ILV+A+AGSGKT V++ERI+ KI+ V +D+L + TFT AA
Sbjct: 15 TDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQ 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ + + + L D Q + +QL L A I T+ +F +++ Y Y L + P
Sbjct: 75 EMKNRIGEALEKVLI---DEPGSQHVRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
FRI +++E +LLK +V DD+ + + +F +LV + +R D + +++I ++
Sbjct: 132 RFRI-ANQTENELLKEEVLDDILEEEYGIEDNTIFFELVDRYTSDRSD-DDLQRMILALH 189
Query: 206 DFSQATDNPQRW---LLENFLKGANTYKD--FSAIPEQEVKDFLNTLQETALALRDVTDL 260
S+A NP++W L+E + T +D +++ ++VK L T ++ ++ L
Sbjct: 190 TESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVKFQLETAEQHIRKATELAML 249
Query: 261 ED---------YKQVTAKGT-PTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA 310
D V GT +AA + + E +Q+ + + +L R D+
Sbjct: 250 PDGPAPRVETLQADVALLGTLSSAARESWTSVYEAMQN--VSWQTL-KRIKKSDYNEDVV 306
Query: 311 TLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQY 370
+ S + VK L L K + +QD P+L+ L F++++
Sbjct: 307 KQVDSLRNKAKDEVK-----KLQEELFSRKPESFLRDFQDMH-PVLEKLVQLVKVFTERF 360
Query: 371 LQAKMQENAFEFSDIAHFAIQILEEN--------DAIRQLYIDKYHEVMVDEYQDNNHTQ 422
K + +F+D+ HF +QIL E A+ Y +K+ EV+VDEYQD N Q
Sbjct: 361 QAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRNKFTEVLVDEYQDTNFVQ 420
Query: 423 ERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDF-QEHPEHGKLILLKE 477
E +++ ++ N FMVGD+KQSIYRFR A+P +F K+K F QE G I L +
Sbjct: 421 ESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDLAK 480
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
NFRS+ EVL TN +F +M E VGEI YD +L G++ YP+ E
Sbjct: 481 NFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGAT-----YPEGEDVAAELLCIQ 535
Query: 538 QQNQDLAVEDDSNQISLG--EVKLVAKEIIRLHNE------------EKVQFEDITLLVS 583
Q +++ ++ ++ E +L+A+ I + + VQ+ D +L+
Sbjct: 536 QTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLR 595
Query: 584 SRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
S I++ GIP+ D Y ++ EV +M++ R IDNP+ D L A+LRSP
Sbjct: 596 SMPWAPQIMEELKLQGIPVYADLA-TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSP 654
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+ +++DLA L K + YE M + G + + + L KL+ F+
Sbjct: 655 IVGLNDEDLATLRAHG----KKGSFYEVMSSFLKGAPLEEE---QELHEKLEWFYNLLQG 707
Query: 704 WREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
WREF+ SL DLIWK+Y + YYD+VG LP +QRQANL L RA
Sbjct: 708 WREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRA 754
>gi|118726541|ref|ZP_01575165.1| ATP-dependent nuclease subunit A [Clostridium cellulolyticum H10]
gi|118664089|gb|EAV70727.1| ATP-dependent nuclease subunit A [Clostridium cellulolyticum H10]
Length = 828
Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats.
Identities = 240/826 (29%), Positives = 403/826 (48%), Gaps = 105/826 (12%)
Query: 434 NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ--EHPEHGKLILLKENFRSQSEVLDATNS 491
N FMVGD+KQSIYRFRQA P++F +K+ ++ E + K++L K NFRS+ +V+D N
Sbjct: 11 NVFMVGDVKQSIYRFRQAKPELFLEKYNNYSIDEDSSYRKILLFK-NFRSRKDVVDGINY 69
Query: 492 VFTHLMDEAVGEILYDDTHQLVAGSSAQK----------------IPYPQNETQVLIYDT 535
+F +M + VGE+ Y++ +L G+ I + VL +
Sbjct: 70 IFKQIMSQKVGELDYNEIEELNPGAGFSPCQNEETVVGGAIELHLIETSVGDNTVLSEGS 129
Query: 536 KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEK-----------------VQFEDI 578
+ QD ED+ E ++VA II L +K V+F DI
Sbjct: 130 EPMDEQDFPEEDEILDNIQKEARMVANRIIELFQADKDGKKYAVYDKKLGEYRNVRFSDI 189
Query: 579 TLLV-SSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALV 637
+L+ ++R + + IP+ D G + K+ EV V+L L+ IDNP D L+
Sbjct: 190 VILLRTTRNWTEVFSAELANADIPVFADTG-SGFFKTPEVQVVLSLLQIIDNPYQDIPLL 248
Query: 638 ALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAF 697
A+LRSP+ F DL + L N +++E ++ Q +S K F
Sbjct: 249 AVLRSPIVNFSTADLTDVRLMN----RNASIFEALKETAVHDTQ--------VSKKASDF 296
Query: 698 FETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTG 757
+ WR+ SL S ++LIW++YN+ Y+ VG++ E++QANL L RA +E T
Sbjct: 297 LQKLEKWRDMSLYMSTHELIWQLYNETGYFSIVGAMQDGERKQANLKILFERALQYENTS 356
Query: 758 FKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFS 816
+ GL FI IDK+ N+ D+ +V N V LM+IHKSKGLEF VF+ KKF+
Sbjct: 357 YSGLFNFISFIDKLKTNKGDMGSAKVLGENDNVVRLMSIHKSKGLEFPVVFLCGCGKKFN 416
Query: 817 IQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQ 876
+QDM ++L ++ G G ++ D K+ ++ ++P Q +++R+ TLSE+
Sbjct: 417 MQDMYKSILLHQELGFGPDFV-DYKK----------RIKYPSIPKQAIAQKIRIETLSEE 465
Query: 877 MRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQYDG--KSENNHLPVADREHYLTFQDWLL-- 931
MR+LYVAMTR+ +KL + G + EK ++ G +S +N P + + DW+
Sbjct: 466 MRILYVAMTRAREKLIITGSVNNIEKSALKWLGTAQSNDNKFPPHNMLKAQNYLDWICPS 525
Query: 932 -------AIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITR 984
I A + + I+D D + + + +++ A D + +DIT+
Sbjct: 526 VMRHKDSVILRNAAGLGVDYSGPTISD-DSSWTIILADQSDIAVAKRFETDTQDREDITK 584
Query: 985 ALDMLEAVEKLNQH-----------YKAAIHLPTVRTPSQIKKFYEPVMETEGVEVM-QT 1032
L + + + H Y+ +P+ + +++K+++ + + ++ +T
Sbjct: 585 WLQEKGSADSGDSHEIHRRLDWKYTYRDFAQIPSKISVTELKRYFHLNNDEDNSQLQYKT 644
Query: 1033 SYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVK 1092
+ KP F K P G+++H +MQ L + + + + + E
Sbjct: 645 ATIKKPAF----LEGKKGLSPAEKGTAMHFVMQHLDFHNEDIAGQVKIMVKKELLTEIQA 700
Query: 1093 KAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAM---------LQADPASGEDYV-VR 1142
K+I + KI F S +GK + + KVYRE PF + D + ED + ++
Sbjct: 701 KSIDIMKISAFIN-SVIGKRMLKSV-KVYREVPFNIELPYKEIYPQLPDVSDYEDKILLQ 758
Query: 1143 GIIDGYILFDNRIVLFDYKTD--KFTNSQAIKERYRGQMTLYAQAL 1186
G++D Y ++ IVL DYKTD + + Q++KE+YR Q++ Y++AL
Sbjct: 759 GVVDCYFEEEDHIVLIDYKTDYIPYGDKQSVKEKYRLQISYYSRAL 804
>gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
H7858]
gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
H7858]
Length = 1106
Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats.
Identities = 229/797 (28%), Positives = 402/797 (50%), Gaps = 91/797 (11%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQIL-EENDA--IRQLYIDKYHEV 410
P ++ L F++ + + K Q +F+D+ H A++IL ++N+A + + Y ++ EV
Sbjct: 346 PDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKEV 405
Query: 411 MVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
++DEYQD N QE +L L++N N FMVGD+KQSIYRFR A+P +F K++ +Q+
Sbjct: 406 LIDEYQDTNMVQETILRLVTNSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMTKYQTYQQD 465
Query: 467 PE-HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQ 525
G I L +NFRS+ EVLDATN +F LMD+ + EI YD +L G+S +P+
Sbjct: 466 GNGSGIRIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTLGAS-----FPE 520
Query: 526 NE---TQVLIYDTKDQQNQ---DLAVED-DSNQISLGEVKLVAKEII---------RLHN 569
T++L+ D K +++ +L+ ++ NQ+ + + KE+I ++
Sbjct: 521 TTDMATELLLIDMKSVESETEDELSPQELQKNQVESRAIAMKIKEMIDNKFPIFDKKMKQ 580
Query: 570 EEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDN 629
+Q+ DI +L + T + + IP + Y ++ EV M+ ++ IDN
Sbjct: 581 NRPIQYRDIVILARAMTSAPDMEEAMKVQDIPFYANN-NSGYFETTEVATMIALMKVIDN 639
Query: 630 PLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEA 689
P D L A+LRSP+ +E++L ++ + + Y+ + ++ +
Sbjct: 640 PYQDIPLAAVLRSPIIGLNEEELGQVRMA----KKNGYFYDALLTYKDTTVSET------ 689
Query: 690 LSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALR 749
+ K+ F + +WRE S+ +L LIW+IY + +Y++VG LP +QRQANL AL R
Sbjct: 690 -ADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDR 748
Query: 750 ADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK-NAVTLMTIHKSKGLEFKYVFI 808
A+ +EKT F+GL RF+R ++++ +DL + K + V +MTIH SKGLEF V +
Sbjct: 749 ANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIV 808
Query: 809 LNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL-PTVKVSMDTLPYQLNKRE 867
+ +KF+++D+ S +L + G Y ++E+ ++ PT+ M Q RE
Sbjct: 809 SGLSRKFNMRDIYSKTLLDKDYGFASNY-----RDIEKMIVYPTI---MQQAMKQKKSRE 860
Query: 868 LRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ-EKLGDQY--DGKSENNHLPVADREHYL 924
+ ++E+MR+LYVA+TR+E+KL L EK + K + LP + R
Sbjct: 861 M----IAEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAK 916
Query: 925 TFQDW-------------LLAIEAAYAAD-------ELHFKTSFITDEDLTEDKMGSLEA 964
+ DW LL E E+ K F+T+E LE
Sbjct: 917 CYLDWIGNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNE---------LEK 967
Query: 965 EQAYD-ADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVME 1023
+ + DN+K+++ + D ++ + A + ++ +++K+ + + +
Sbjct: 968 TETVNWLDNIKEHQPIPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFS-LQD 1026
Query: 1024 TEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDILTALA 1083
+ + +Q K + P+F ++ K T +G+++H LMQ + L Q + ED L L
Sbjct: 1027 SWSDTTLLKEFQ-KVSLDRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLL 1084
Query: 1084 ELSVEENVKKAIQVDKI 1100
+ E+++ Q+ I
Sbjct: 1085 QTMREKDILTEAQLKAI 1101
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 114/195 (58%), Gaps = 8/195 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---GVTIDQLFISTFTVKAAG 85
T +Q +AI G N+LV+A+AGSGKT V++ RI++K++ + +D+L I TFT +A
Sbjct: 15 TDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAA 74
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+K R+ K + E L D+ L Q+ L A I T+ +F +++ +Y + I P
Sbjct: 75 EMKFRIGKGLEEALAQNPDST---HLKRQVALLNYASISTLHSFCLEIIRKYYFDADIDP 131
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NFR+++ E +++++V ++L + + E F LV +F G+R D+ +I K+Y
Sbjct: 132 NFRLIE-PIESSMIRDEVLENLLEQEYSIENNEPFFHLVESFTGDRSDAE-LHALISKLY 189
Query: 206 DFSQATDNPQRWLLE 220
DFS+A +P WL E
Sbjct: 190 DFSRANPDPNIWLEE 204
>gi|145954748|ref|ZP_01803752.1| hypothetical protein CdifQ_04001143 [Clostridium difficile QCD-32g58]
Length = 1022
Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats.
Identities = 256/935 (27%), Positives = 445/935 (47%), Gaps = 135/935 (14%)
Query: 355 LLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA--------IRQLYIDK 406
+++ + S L F ++Y K ++ +F+DI HFA+ IL + D I Y +K
Sbjct: 90 IVKPISSVVLRFEEEYSNKKREKGIIDFNDIEHFALNILTDIDEKGNIVPSDIAVGYRNK 149
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR--NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ 464
++E+ +DEYQD+N QE +L+ ++N NRFMVGD+KQSIYRFRQA P++F QK+ ++
Sbjct: 150 FYEIFIDEYQDSNLVQEVLLKAVANTETPNRFMVGDVKQSIYRFRQAKPELFLQKYNNYN 209
Query: 465 EH--PEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSS----- 517
+ H K++L K NFRS+ EV+DA N +F ++M+E +GEI Y + +L G++
Sbjct: 210 DKKGSSHRKIMLYK-NFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDT 268
Query: 518 -AQKIPYPQNETQVLIYDTKDQQNQDLAVED---------------DSNQISLGEVKLVA 561
+ I E ++ D K + +D D+ Q+ V +
Sbjct: 269 DEKSIIGGATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNII 328
Query: 562 KEIIRLHNEEKVQ--------------FEDITLLVSSRTRNDGIL-QTFDDYGIPLVTDG 606
K++++++ + K+Q F DI +L+ + + + + IP D
Sbjct: 329 KDLMKVNEDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPVFADELMNMDIPTYADV 388
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G Y ++E+ +L L+ IDNP+ D L+++L+SP+F F +DL + +Q+ +
Sbjct: 389 G-VGYFDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYE 447
Query: 667 NL-----YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIY 721
L Y+ +++N + E ++ D F ++E S+ S + IW +Y
Sbjct: 448 VLKSTAEYDGFTDSQNETESEFIPSEECINKSKD-FLIKLKEFKEKSMYMSTDEFIWYLY 506
Query: 722 NDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
YY YVG+LP QRQANL L RA FE+T KG+ F+ I+K+ ++ +D+
Sbjct: 507 TRTGYYAYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSA 566
Query: 782 E-VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
+ + N V +M+IHKSKGLEF V + K F+ QD ++ G G +++
Sbjct: 567 KTLGENANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYE 626
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG--KGS 898
+ ++S ++ + K ++ + LSE+MR+LYVA TR+++KL + G +
Sbjct: 627 R-----------RISFPSIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNI 675
Query: 899 QEKLGDQYDGKSENNHLPVADREHYLTFQDWLL----------------AIEAAYAAD-- 940
Q+ + +G + + + F DW++ ++A + +
Sbjct: 676 QDSIKRWSNGIESLDTISQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHN 735
Query: 941 -----ELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKL 995
+L K + ++ E+K E + D D+ D+ +I + L+ +
Sbjct: 736 SKWYGKLWNKNDILVEKKSDEEKESIEEILEKIDVDS-PDSDYYSEIEKKLNYIYP---- 790
Query: 996 NQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQF----SKKAKQ 1051
Y+ + P + ++IKK E E++ T ++ K + P F ++ K
Sbjct: 791 ---YEFSTRKPATISVTEIKKIQNNYEE----ELINTIFEQKVILKKPLFIQNEEEREKI 843
Query: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILTAL----AELSVEENVKKAIQVDKILHFFQTS 1107
T G+ VH +M+ L L S+ DI + + ++ + E + KI FF S
Sbjct: 844 SGTERGTIVHLVMEVLDLKNVSSVNDIKSQIRGFVSKGIITEKQASIVNPYKIYKFF-AS 902
Query: 1108 QLGKLIQANADKVYREAPF-------------AMLQADPAS---GEDYVVRGIIDGYILF 1151
+GK + NA+ + RE ++ D E ++RGI+D Y
Sbjct: 903 NIGKRM-LNAEIINREKSIYAQVNMKDIYIYEKLINNDDKKLYDNESVMLRGIVDAYFEE 961
Query: 1152 DNRIVLFDYKTDKFTNSQAIK---ERYRGQMTLYA 1183
DN+IVL DYKTD F N + I E+Y+ Q+ LYA
Sbjct: 962 DNQIVLVDYKTD-FVNEENINQIIEKYKKQLDLYA 995
>gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799]
gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799]
Length = 1206
Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats.
Identities = 265/909 (29%), Positives = 415/909 (45%), Gaps = 131/909 (14%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA----IRQLYIDKYHE 409
P ++ L + DF Y K + +FSD+ H A+++L D + + + +Y E
Sbjct: 333 PAVRGLFALVKDFEAAYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLAKQWSGRYDE 392
Query: 410 VMVDEYQDNNHTQERMLELLS-NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQ--EH 466
+MVDEYQD N Q + +S +GRN FMVGD+KQSIYRFR ADP IF +K++ F E
Sbjct: 393 IMVDEYQDTNAVQNAIFSAISQDGRNLFMVGDVKQSIYRFRLADPTIFLEKYRTFTPYET 452
Query: 467 PEHG--KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYP 524
E G + I+L +NFRS+++VL+ N +F +M + GE+ Y L G+S YP
Sbjct: 453 AEEGEPRRIILSKNFRSRAQVLEGANFIFRGIMSRSFGEMDYTADEALYPGAS-----YP 507
Query: 525 QNETQVLIYDTKDQQNQDLAVEDDSNQIS---LGEVKLVAKEIIRLHN-----------E 570
+ + D D ED+S + + L E + +AK I L +
Sbjct: 508 EGADYAVELDALDLAAGGGDDEDESGEKTPRDLLEARFLAKRIKELKDGGFPVSDGEGGT 567
Query: 571 EKVQFEDITLLVSSRTRNDGI---LQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSI 627
+ D+ +LV R+ N + + + IP D G +Y ++ EV V L L+ +
Sbjct: 568 RPAGYGDMVILV--RSPNSVLHHYARALGERDIPWEADAG-GDYFETTEVSVALSLLQIV 624
Query: 628 DNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLIT 687
DNP D L+++LRSP++ F D LA L + PD + Y L+
Sbjct: 625 DNPRQDVPLISVLRSPVYGFTADRLAVLRAAS-PDT---DFY-------------AALVK 667
Query: 688 EALSAKLD--AFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYA 745
A +D AF R S + + L+W+IY+ G++ + E+RQ NL A
Sbjct: 668 GAEEGGVDCAAFLAELEDLRFRSGDRNSHQLLWQIYDRTNLLGIFGAMDEGEKRQGNLLA 727
Query: 746 LALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKY 805
L A FE G KGL F+ + ++ +N LA + A V +++IHKSKGLEF
Sbjct: 728 LCELARQFEAAGHKGLFGFLTYLTRLRDNGGKLAAPQAAREGGGVRILSIHKSKGLEFPI 787
Query: 806 VFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNK 865
V + + ++ + DM P++ Q GVG K + D + +E L V+
Sbjct: 788 VLLSGLTRRLNRDDMQRPILFHPQLGVGPKRL-DTERMIEYPTLARRAVA---------- 836
Query: 866 RELRLATLSEQMRLLYVAMTRSEKKLYLV-----GKGSQEKLGDQYDGKSENN------- 913
R+L ++E++RLLYVAMTR+++KL L G KL + + ++
Sbjct: 837 RQLEYEMMAEELRLLYVAMTRAKEKLILSCALTRGAADLRKLAEDAEYPADPQVLSGCQS 896
Query: 914 -----HLPVADREHYLTFQ---DWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAE 965
LPV R + + D+ L I AA + + ++ DL + E +
Sbjct: 897 VGQWVLLPVLTRPDAVAIRRAADYPLPIAAAELGPDWDIR--WVDGSDLLQPP----ERK 950
Query: 966 QAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIK---------- 1015
A ++N++D D L V Y + +P+ T +Q+K
Sbjct: 951 TAVLSENVEDKPVGD--------LTGVLTWKYPYAGDVEIPSKLTATQLKGRELDQEAGA 1002
Query: 1016 KFYEPVMETE---GVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQ-----RL 1067
+F P E E V + S +P+F +F Q TAL H +MQ R
Sbjct: 1003 EFPLPQGEPEEPAAVPAGKRSTLRRPRFAEEEFGLTPAQKGTAL----HLVMQYIDFERA 1058
Query: 1068 HLSEQVSLEDILTALAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFA 1127
EQV E+I +A + +A+ KI FFQ S LG+ + + + RE F+
Sbjct: 1059 GTEEQVK-EEIARLVAGAYITPEQGEAVNPAKIAAFFQ-SPLGREMMESV-SLRREFKFS 1115
Query: 1128 ML--QAD----PASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNS--QAIKERYRGQM 1179
+L AD GE +++G++D I + D+KTD+ T Q E YR Q+
Sbjct: 1116 ILVPAADYCPGAGEGEQVLLQGVVDCCFETLEGITVVDFKTDRVTRRTIQERAEEYRPQL 1175
Query: 1180 TLYAQALSQ 1188
T Y++AL +
Sbjct: 1176 TAYSRALEE 1184
Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKI-LRGVTIDQLFISTFTVKAAGEL 87
T +Q + G +LVSA+AGSGKT V++ER++ ++ G+ ID+ + T+T AA EL
Sbjct: 6 TEQQAAVVNNRGGALLVSAAAGSGKTRVLVERLLGRVEHEGLDIDRFLVITYTKAAAAEL 65
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
+ R+ +++++ RL + + +Q L + A I T+ +F +L+ + G+ L ++P+F
Sbjct: 66 RSRIVEELSQ--RLARNPTDRHLRRQQTL-VYKAQISTVHSFCAQLLRECGHMLDVNPDF 122
Query: 148 RILQDKSEQDLLKNDVFDDLFTDYRTGDQA--ELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
R L D+ E +L D++ D R D F KLV + R D S QI+ I
Sbjct: 123 R-LCDEGEAGVLMLRALDEVM-DRRYEDITPDSDFAKLVDTMSAGR-DDSRLMQIVLDIR 179
Query: 206 DFSQATDNPQRWL 218
Q+ +P WL
Sbjct: 180 GRVQSHPDPAAWL 192
>gi|106887037|ref|ZP_01354359.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
gi|106765461|gb|EAT22218.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
Length = 1377
Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats.
Identities = 274/1038 (26%), Positives = 464/1038 (44%), Gaps = 227/1038 (21%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND-------AIRQLYIDK 406
P+L VL S T DF ++ +K + N +FSDI HFA+ IL + + ++
Sbjct: 340 PML-VLLSLTHDFLERLDASKEENNLVDFSDIEHFALNILVTKEDGNLVPTKVATEMSEQ 398
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQIFNQKFKD 462
+ E+M+DEYQD+N+ QE +L +S N FMVGD+KQSIY+FR A P++F +K++
Sbjct: 399 FVEIMIDEYQDSNYVQEYILSSISKVTRGCPNVFMVGDVKQSIYKFRMARPELFMEKYEQ 458
Query: 463 FQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIP 522
+ + I L +NFRS++EVLD+ N VF +M +A+G I Y L G+ +I
Sbjct: 459 YSTEEGLYRRIDLSKNFRSRAEVLDSINGVFEKIMTKAMGGIEYTKEVSLYPGAQFPEIG 518
Query: 523 YPQNETQVLIYDTK------DQQNQD------------LAVEDDSNQISLGEV--KLVAK 562
+ T L DTK D + ++ +A+E+D+ ++S E+ K VA
Sbjct: 519 MDLDNTSFLFSDTKTELIILDLKEEEASIPDSMDRLDVMALEEDAIELSKRELEAKAVAM 578
Query: 563 EIIRL-HNE---------------EKVQFEDITLLVSSRTR-NDGILQTFDDYGIPLVTD 605
I +L H E ++ Q+ DI +L+ + + ++ + GIP +D
Sbjct: 579 RIKQLVHGERGFSVTKRNGEEQDLKRCQYRDIVILLRTMSGWSETFTEILKQEGIPAYSD 638
Query: 606 GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHK 665
+ Y +++EV +L+ LR +DNP D L A+L SP+ + L+ L ++ K
Sbjct: 639 -TQTGYFQTLEVKTVLNYLRILDNPRQDAPLTAILYSPIVGLSAEQLSFLRVKPGKGAEK 697
Query: 666 QNLYEKM------------ENARNGQGQ-------QVQLITEALSA-------------- 692
++Y+ E + + Q Q L+ E SA
Sbjct: 698 LSIYDAARECALNYLEIQDEVTQPEETQPVYDSIIQADLMYEKSSAEKTVSMDKNLIETG 757
Query: 693 -KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751
KL FF T+ RE ++ ++++I + + + Y +V ++P EQR+ NL L A
Sbjct: 758 EKLKRFFATYDKLREKAIYLPVHEIILEFFKETGYDLFVYAMPGGEQRRNNLNLLVQHAL 817
Query: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADV-EVALPKNAVTLMTIHKSKGLEFKYVFILN 810
+FE++ + GL +FIR I+++L+ + D + ++ NAV +M+IHKSKGLEF V +
Sbjct: 818 SFEESSYHGLFQFIRYIERLLKFEIDYGEAGGLSENDNAVRIMSIHKSKGLEFPVVILAG 877
Query: 811 IDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRL 870
+ K+F+ D ++L G+G E + ++ TL Q+ K+ + L
Sbjct: 878 MGKQFNTMDAREKIVLHADYGIG-----------PECIDYQLRTKCPTLLKQVIKKNIVL 926
Query: 871 ATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTF---Q 927
L E++R+LYVA+TR+++KL ++ GS D +D K + P + T +
Sbjct: 927 DNLGEELRVLYVALTRAKEKLIMI--GSANDANDVFD-KWRQDSTPGVTPLRFQTLAMAK 983
Query: 928 DWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLK------------- 974
D+ + A D + +T DL ED E E+ D N +
Sbjct: 984 DYFSFVGPAALYDS-RIRVITLTPNDLLED-----EYEKQTDIKNKQEELNPYNFLQSFE 1037
Query: 975 ----------------------DNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPS 1012
D QSD D+L + Y+ LP T S
Sbjct: 1038 EESDEQSDEERSDEERSDGEQSDGEQSDGEQPRKDLLTKLS-FRYPYEHEAMLPIKTTVS 1096
Query: 1013 QIKKFYEPVME------------------------TEGVEVMQTSYQTKPKFE------- 1041
++KK + V E TE ++ +T P +
Sbjct: 1097 ELKKLSQQVDEELTETFTQVKDELTKTWPQVDEELTEKYPQVEELIETSPPVKEESQMLI 1156
Query: 1042 ---LPQFSKKAKQ-DPTALGSSVHELMQRLHLSE---QVSLEDILTALAELS-VEENVKK 1093
+P+F K+ K+ T G+ H++++ + S+ +++L + ++ LA ++E
Sbjct: 1157 EPTIPKFLKEEKELRGTERGNLYHKILELIDFSDNKTKLNLREFVSQLANRGLIQEESIS 1216
Query: 1094 AIQVDKILHFFQTSQLGKLIQANADK--VYREAPFAM---------------LQADPAS- 1135
+I +++ FF+ S+L + IQ K +YRE PF + QA +S
Sbjct: 1217 SINFERLSRFFE-SELYQRIQIAYQKGYLYREQPFVIGIPVREISTQKFVRTTQAQASSI 1275
Query: 1136 -----------------GEDY------VVRGIIDGYILFDNRIVLFDYKTDKF--TNSQA 1170
+DY +++GIID Y ++ IVL DYKTD +
Sbjct: 1276 LSKNEDFSHANLCSCPNSQDYENDDLVLIQGIIDVYFEEEDGIVLVDYKTDAVGELGEEE 1335
Query: 1171 IKERYRGQMTLYAQALSQ 1188
+ RY+ Q+ Y +AL+Q
Sbjct: 1336 LIRRYQEQIRYYERALNQ 1353
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 83/242 (34%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 25 KQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTV 81
K TP Q + I T N+LVSA+AGSGKT V++ERI+++I + IDQL I TFT
Sbjct: 3 KTSWTPGQQKVIDTRDCNLLVSAAAGSGKTAVLVERIINRITSENSPINIDQLLIVTFTK 62
Query: 82 KAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
AAGE++ER+ I +++ D L +QL L +A I T+D+F ++ + +T+
Sbjct: 63 AAAGEMRERIGAAIEKKVLEQPDNV---HLQKQLTLLYSAQITTIDSFCLSVIRNHFHTI 119
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQII 201
+ P+FRI ++ +E LLK+DV L + + + AE F + V ++ ++ D I
Sbjct: 120 DLDPSFRIAEE-AELMLLKSDVLATLLEE-KYEEGAEDFLEFVECYSASKSDEP-IENFI 176
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKD---FLNTLQETALALRDVT 258
K+Y FSQ+ P WL E KDF +++ LQ LR+ +
Sbjct: 177 LKLYQFSQSYPYPHEWLEER-------EKDFLVETAEDINQTSWMKQLLQYVKAILREAS 229
Query: 259 DL 260
DL
Sbjct: 230 DL 231
>gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
Length = 1129
Score = 213 bits (543), Expect = 5e-53, Method: Composition-based stats.
Identities = 243/899 (27%), Positives = 417/899 (46%), Gaps = 100/899 (11%)
Query: 31 EQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR-------------GVTIDQLFIS 77
EQ +AI++ +++SA AGSGKT V+ ER + + G +D+L
Sbjct: 8 EQEQAIFSRAPLVVLSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFGAEVDELVAI 67
Query: 78 TFTVKAAGELKERLEKKITEQL---RLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLV 134
TFT KAA E+KER+ +++ E++ + D F +Q GL+ A I T +F Q+L+
Sbjct: 68 TFTEKAAREMKERIRQRLLEKVEEAKAHGDAGQMIFWQKQKEGLERARISTFHSFCQRLL 127
Query: 135 TQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDS 194
+Y GI P F +L D+ E ++K ++ DDLF D LF KL+ + R
Sbjct: 128 LEYAQEAGIPPTFIVL-DEVEAAIMKREILDDLFQDALL---RPLFAKLLECYT-KRSLE 182
Query: 195 SNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALAL 254
S+ Q+ I D A D+ + L + + T+ + + E+E + + E A L
Sbjct: 183 SSLLQVYEHIRDI-HADDDVFKRLDGDAMLNVQTH---ALLLEKEQQ--IAVFHEKASRL 236
Query: 255 RDVTDLEDYKQVTAKGTPTAAYQRHL-KMIEQLQDWVLHFDSLYGRDGLGKLANDIATLI 313
D D D + T A + H+ ++ LY + +
Sbjct: 237 VDRIDGND-------PSLTKALKDHIHNLLSCFHQLNPEAPDLY--------VQTLTAAM 281
Query: 314 PSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLD----FSKQ 369
P+ + G K P F+ L+ +GLK T F + Q + +VL +F +D F+ +
Sbjct: 282 PARGHKS-WGEKAPAFQQLYDEWKGLKKHWTSFSVEVQPITK-EVLTAF-IDLLQYFAAR 338
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + K +AF+FSD+ A+ +L++ D + + D++ +MVDE+QD N Q +L +
Sbjct: 339 YKERKQLLSAFDFSDLQRNAVCLLDQEDVQKSCH-DQFKHMMVDEFQDTNQMQMDVLTKI 397
Query: 430 SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
N +F+VGD KQSIYRFR AD + N+ + ++ E + I + N+R+ + V+ A
Sbjct: 398 -NPSYQFLVGDGKQSIYRFRGADVTLMNEMSEQARDEKE-AQFIEMNTNYRTTAPVIHAV 455
Query: 490 NSVFTHLM-DEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N +F H M D +V + Y A + P +++ +V ++ TK + E D
Sbjct: 456 NGLFAHAMKDVSVHSVPY-------ASLIPAREPEKEDDIRVSLHITKTTEK-----EKD 503
Query: 549 SNQISLGEVKLVAKEIIR-----LHNEEKVQ---FEDITLLVSSRTRNDGILQTFDDYGI 600
++Q+ + E++R + N E + + D+ +L+ RT + + D GI
Sbjct: 504 NDQVPYHHIADRLLEMVRTGEPTVWNGESWRSPNWGDMAILIPVRTELLALERALSDKGI 563
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
P GG Y + E++ + LR +D P + L ALLRSPMF DDL +
Sbjct: 564 PYHVYGGVGFYERQ-EILDFVTLLRWLDRPFEELYLFALLRSPMFGLTLDDLMFV----- 617
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAF--FETFLS-WREFSLLNSLYDLI 717
K+ +++ +++ + DAF T+L W F + SL D +
Sbjct: 618 ----KERFSDELTWFDIVVDKEMASLFAERPVVTDAFVRLRTWLDRWVPFRPVPSLIDHL 673
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQND 777
+++++ + Q+ N+ L ++ + L + +I +E + +
Sbjct: 674 YELFDQTGLKMSLFVQENGMQKVRNVEKLIDVMSGWKTNVLEELLQRFDLIQAEVEKEGE 733
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYI 837
A+VE + N V +MT+H SKGLEF V + +D+ Q + R+ G+ +++
Sbjct: 734 -AEVE-QVAGNVVHIMTVHASKGLEFPIVCLPQLDR--VPQRDKGQVRYDREMGIVLRH- 788
Query: 838 ADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGK 896
E EE V ++T + L K + LAT++E RL YVA TR+ L++ GK
Sbjct: 789 -----EWEED---DGVVKLETPAFALVKEQADLATMAENKRLFYVAATRARDYLWMTGK 839
>gi|116621025|ref|YP_823181.1| UvrD/REP helicase [Solibacter usitatus Ellin6076]
gi|116224187|gb|ABJ82896.1| UvrD/REP helicase [Solibacter usitatus Ellin6076]
Length = 1045
Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats.
Identities = 211/878 (24%), Positives = 359/878 (40%), Gaps = 156/878 (17%)
Query: 29 TPEQIEAIYTSGT--NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGE 86
TP+Q++A+ N V A GSGKT V++E + V ++ TFT KAAG
Sbjct: 7 TPDQLDAVDVEKRHLNACVVAGPGSGKTTVLVEYFRRLVEADVDPLRILAITFTEKAAGN 66
Query: 87 LKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPN 146
++++L + +Q ++ L+ A + T+ F +L+ + G+ P
Sbjct: 67 MRKKLGQAFQDQPQIRAR-------------LERAWVSTVHGFCARLLRENAVFAGVDPE 113
Query: 147 FRILQD----KSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
FR+L + +Q+ ++ + D LF D+ G + L+R + S F Q +
Sbjct: 114 FRVLDATESWRMQQEAMRTAI-DSLFADHLEGMRG-----LIRGLS-----SFEFEQAVL 162
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRD------ 256
YD + P L + + E+ D LN ++ +L+ +
Sbjct: 163 SSYDTMRGAGTPVDELTH--------FPVPPGVTVDEINDTLNAIRRESLSGWNHQQKEH 214
Query: 257 -VTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPS 315
T LE +++ +P A L+ IE+ + T
Sbjct: 215 LETALEGAERIVGAESPIEA----LRAIERFSCNL--------------------TKCKR 250
Query: 316 GNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKM 375
G + T + + + ++ G ++ Y Q L+++L+ F + Y K
Sbjct: 251 GTNTT------NLLKRMREQIEGAEYALITALYAPQRELLIEILRRF----DRLYRDRKR 300
Query: 376 QENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNR 435
Q A +FSD+ F +++LEE+ R ++ +++DE+QD N Q +++EL+
Sbjct: 301 QGAALDFSDLEEFTVRLLEEHHETRARLQRQFDHILMDEFQDTNGQQAKLIELIRPPDRF 360
Query: 436 FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTH 495
+ VGDI QSI+ FR A+PQ F + + H L+ L +NFRS++E+L A +
Sbjct: 361 YAVGDINQSIFGFRHAEPQGFARYRDEIATGDRH--LVQLVDNFRSRAEILSAVET---- 414
Query: 496 LMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLG 555
L AG+ E + L+ + + +VE + +
Sbjct: 415 ----------------LTAGAKGI-------EDRALVAGRRFDDAPEHSVEVIAAPETAI 451
Query: 556 EVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSV 615
E + VA+ I+ L E QF+D +LV + FD GIP + + G + + S
Sbjct: 452 EAQWVARRIMELSGPEP-QFKDFAVLVRNTEVIPEFTDAFDAAGIPYLVNRG-RGFYASR 509
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
EV + LR+I NP ++ +L +LRSP+ + L RL + +NL
Sbjct: 510 EVNDLTHLLRAIANPRDEISLAVVLRSPLVNASVEALLRLKMNG------ENL------- 556
Query: 676 RNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPK 735
G +Q +AL + A + RE+ + L L+ I D Y G++ K
Sbjct: 557 ----GAALQRSEDALLQRFGARLHEWRGRREYVTFDRL--LLEAI--DDCGYPASGNVDK 608
Query: 736 SEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTI 795
A + L F+ + ++ E D NAV +MT+
Sbjct: 609 ------------FLAQARDAASRMSLDEFVMELAQVREENPREPDAPPEDSANAVKIMTV 656
Query: 796 HKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVS 855
H +KGLEF VF+ I K + + SR G+G ++ P
Sbjct: 657 HSAKGLEFPVVFVAAIHK--GVDTGVPAVAFSRHYGLGARWRN-----------PASGQD 703
Query: 856 MDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
D L +RE + E RL YVAMTR+E++L L
Sbjct: 704 KDDLFQHALRREWKQREEEESNRLFYVAMTRAEQRLIL 741
>gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
Length = 1080
Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats.
Identities = 224/889 (25%), Positives = 365/889 (41%), Gaps = 102/889 (11%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88
T Q A T+ V+A AG+GKT V++++ + + GV + + TFT KAAGE+K
Sbjct: 4 TERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLLESGVGVGNILALTFTEKAAGEMK 63
Query: 89 ERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFR 148
R+ + I E+ D +FL A + T +F ++ ++ G+ P+F
Sbjct: 64 IRVRRAIAEKEGERWDAIRDEFL--------WAKVSTFHSFCASVLREFSIGAGVGPSFA 115
Query: 149 ILQDKSEQDLLKNDVFDDLF-TDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF 207
+L D+ E L+ + DDL D T + + L A + N+ + +Y
Sbjct: 116 VL-DEGEAFRLREEAIDDLIHGDPPTACRDAVIGALR---AVGAYELKNYLEALYSRRGA 171
Query: 208 SQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVT 267
++A E L T + ++ FL+ + LRD+ +
Sbjct: 172 AEAFFAALAESEEEVLDAWRTA--LERCQTEALEAFLSRAAPSIETLRDLA-----ARYP 224
Query: 268 AKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYP 327
+ P AY R ++ + V +++ G K G+D+ Y
Sbjct: 225 GERDPAGAYLRAVEPCLAGEIAVAELAAVHDNSGFRKNMGQKKNW--EGDDLDNLRAAYG 282
Query: 328 VFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFS---KQYLQA----KMQENAF 380
V R + G L D + P + F D K +L + K + NA
Sbjct: 283 VLRQCLTDHAGACSLTL-----DAADPFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNAL 337
Query: 381 EFSDIAHFAIQILEEN-DAIRQLYIDKYHEVMVDEYQDNNHTQERMLE-LLSNGRNRFMV 438
+F D+ + ++ + D + + ++ ++VDE+QD + Q ++ LL + N F+V
Sbjct: 338 DFDDLVNRTHRLFRDRGDIVETHFRSRFRFILVDEFQDTDPVQIAIIRTLLGDSANLFVV 397
Query: 439 GDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMD 498
GD KQSIY FR+AD F+ +D E G+ + L NFRS EV+ TN+VF+ LM
Sbjct: 398 GDPKQSIYLFREADVTQFSHT-RDLIERDLGGETVALDVNFRSTPEVVGFTNAVFSALMA 456
Query: 499 EA--VGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD-----QQNQDLAVEDDSNQ 551
EA E LY+ H + + +L +D + ++A +
Sbjct: 457 EAGRPWEFLYEPLHAFRRDDAG-------SVELLLCQKIRDRAAGRRAEAEMAARKIRSL 509
Query: 552 ISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNY 611
+ GE K + R + D+ +L+ RT YG+P G Y
Sbjct: 510 VERGE-----KRVSRDGEVRPAGYGDVAVLLERRTNLAYYEWALARYGVPYHVHAGLGFY 564
Query: 612 LKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEK 671
+ EV + + LR + N L+D AL +LRSP F F + L +A P +L+E+
Sbjct: 565 ERQ-EVYDLYNILRFLANNLDDAALYGVLRSPYFGFSDARLFHIA--RAPG---ASLWER 618
Query: 672 MENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVG 731
++ A + T W S L+ +I ++ + G
Sbjct: 619 LQ------------------AAAEPAAATLREWLSLSRRLPPARLLRRIVDESGIFVVFG 660
Query: 732 SLPKSEQRQAN---LYALALRADNFEKTGFKG-LSRFIRMIDKILENQNDLADVEVALPK 787
+ EQ AN L ALA AD GF L R I D+ + DLA +
Sbjct: 661 GMAGGEQAAANVEKLIALARDADCSTLAGFVAELGRSIDAGDREGDAPLDLASAD----- 715
Query: 788 NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEK 847
+V++MT+H +KGLEF V + ++ + T + GV I A+ E E
Sbjct: 716 -SVSIMTVHAAKGLEFPVVVVPDLAETPRSGGGTIMVEDGLLLGVSIPNPANDHEREETP 774
Query: 848 LLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGK 896
+L +L K E R +E+ RL YVA+TR+E L L G+
Sbjct: 775 VL------------RLLKDEYRQKEEAERKRLFYVAVTRAEDHLILCGE 811
>gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
gi|56910591|dbj|BAD65118.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
Length = 863
Score = 169 bits (429), Expect = 9e-40, Method: Composition-based stats.
Identities = 227/928 (24%), Positives = 400/928 (43%), Gaps = 100/928 (10%)
Query: 32 QIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILR---------GVTIDQLFISTFTVK 82
Q +AI + ++V+A AGSGKT V+ E+I+ I G I+++ TFT K
Sbjct: 7 QKQAIESKQPLVVVAAGAGSGKTRVLTEKIVSIIDEHFHDKGSNYGAPINEIAAITFTEK 66
Query: 83 AAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLG 142
AA E+KERL ++ E+ + K+F Q ++TA I T F ++L+++Y
Sbjct: 67 AAREMKERLASRMGEKAEAAGNREEKRFWLAQQEEVETAMIATFHRFCRQLLSRYSRYAE 126
Query: 143 ISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
+ +L D++E ++K ++ + L + + ++ + FA R + +
Sbjct: 127 ENGELAVL-DETEAAMIKAELVEQLCKERQFANELNQLRGGLSLFALKRSLVAVHDAVRE 185
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLED 262
+ + ++ + + GA + +Q+V + ++ A L ++ L
Sbjct: 186 QRAGDDAISHFSPLYMWDKQINGAICEQ------QQQVAMIVKAVKRAAKELPPLSQLSK 239
Query: 263 YKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVA 322
+Q A+ T A + LQ LA + + N+ +
Sbjct: 240 TEQKHAQSLTTLA--------QSLQ-----------------LAANEEEAVAMMNEALPS 274
Query: 323 GVKYPVFRSLHSRLRGLKHLETIFKYQ---------DQSLPLLQVLQSFTLDFSKQYLQA 373
V+ SL S +H FK Q D+ LPLL+ + F+K+Y
Sbjct: 275 RVQKAWQESLPSLYVFYEHNWKPFKKQWSERNQVCSDRGLPLLKAFVTLLQAFAKRYADL 334
Query: 374 KMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGR 433
K Q +FSD+ A +L+ + Y +MVDE+QD N Q ++++ + N
Sbjct: 335 KAQRLVADFSDLQQKAYTLLQL-PKVAAACQSAYTHIMVDEFQDTNQVQLQIVQAI-NPA 392
Query: 434 NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVF 493
+ F VGD KQSIYRFR AD I N+ K E E G+LI L+EN+R+ ++++ N +F
Sbjct: 393 HLFFVGDEKQSIYRFRGADVAIMNEMAKKAAEINE-GELIHLQENYRTAPQIVELVNELF 451
Query: 494 THLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
H+M GE V + +K P Q L L +++ +
Sbjct: 452 AHVMAPG-GEDALPYATSYVPLKAGRK---PHTNKQAL------AAFHQLEKSNEARSFA 501
Query: 554 LGEVKLVAKEIIRLHNEEKV---QFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQN 610
+ +A +I + E KV Q+ D+ +L+ SRT + Q F + GIP GG
Sbjct: 502 SLLQQTIADGMIEVEGEGKVRQAQWNDVAVLLPSRTNLPELEQAFAEAGIPYRVHGG-VG 560
Query: 611 YLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ-NLY 669
+ + EV+ L+ L + P D +VALLRSP+F DL L + + ++H+ ++
Sbjct: 561 FFEKQEVIDFLNVLNWLRRPFEDAYVVALLRSPLFGLTLSDL--LTVNDCKEEHENLAVF 618
Query: 670 EKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDY 729
E A + +L +AL + + + FL F+ S+ + + +++
Sbjct: 619 LAKEEAPSLFANHPRL-QQALK-QYGEWIDLFLP---FAFTGSVKEGLLQLFELTGLRYA 673
Query: 730 VGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKN 788
V S QR N+ L D F + L +++ + ++ + EV L
Sbjct: 674 VLSDTNGIQRVGNVEKL---IDLFAQLNTTNLETLCLQMNRYIAASKNVPEAEVEQLEGE 730
Query: 789 AVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKL 848
AVT+MT+H SKGLEF V + +D+K R+ Y D + ++ +L
Sbjct: 731 AVTIMTVHASKGLEFPVVCLPYMDQK-------------RRPDTDAVYF-DQEWDIVFQL 776
Query: 849 LPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDG 908
+ + T Y + + L E RL YVA+TR++ L E+
Sbjct: 777 KLDDRDPISTPAYFQAQEKRGKQALEEAKRLFYVALTRAKDYCLLAAADLSER------- 829
Query: 909 KSENNHLPVADREHYLTFQDWLLAIEAA 936
+S + A+ + L+ +W+ ++++
Sbjct: 830 RSWAEMVEAANEQSPLSAINWVESVKSG 857
>gi|83589346|ref|YP_429355.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
gi|83572260|gb|ABC18812.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
Length = 1405
Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats.
Identities = 120/387 (31%), Positives = 176/387 (45%), Gaps = 73/387 (18%)
Query: 569 NEEKVQFEDIT------LLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLD 622
++EK ++ D+T LL ++R R L+ YGIP D G Y + E+ +L
Sbjct: 625 DQEKKEYRDLTYRDIVILLRATRDRAPVFLEALKQYGIPAYADLG-SGYFAATEIETILS 683
Query: 623 TLRSIDNPLNDYALVALLRSPMFAFDEDDLARL--------------------------- 655
LR IDNP D L A+LRSP+ DLAR+
Sbjct: 684 LLRVIDNPHQDIPLAAVLRSPIVGLSAGDLARIRLAAPGEDFFTAVVKAAGAPLLPFTAR 743
Query: 656 --------------ALQNLPDQHKQNLYEKMENARN-----------GQGQQVQLITEAL 690
AL N P Q + +E+ + G+ V L
Sbjct: 744 ESAAPSSTATGSGGALDNQPGQDPVCIAPYIEDTQEPWRDDHPGPGAAAGKAVPGKDRDL 803
Query: 691 SAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRA 750
++ L F WR + L D+IW++Y + Y ++VG LP QRQANL AL RA
Sbjct: 804 ASLLREFLARLERWRTLARRQPLGDVIWQLYRETGYLEFVGGLPGGAQRQANLRALLDRA 863
Query: 751 DNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKN--AVTLMTIHKSKGLEFKYVFI 808
FE GL RF+R I+++ +N+ DL AL +N V +M+IH++KGLEF V +
Sbjct: 864 RQFEGFARHGLFRFLRFIERLQQNEGDLGTAR-ALGENEDVVRVMSIHRAKGLEFPVVIV 922
Query: 809 LNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKREL 868
+ K F+++D++ +L + G+ Y L + TLPY L
Sbjct: 923 AGLGKGFNLRDLSGDFLLHGRLGLVPLY-----------LDAAAGIKYPTLPYLATGHRL 971
Query: 869 RLATLSEQMRLLYVAMTRSEKKLYLVG 895
RL LSE++R+LYVA+TR+ +KL L G
Sbjct: 972 RLEALSEELRILYVALTRAREKLILAG 998
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 158/550 (28%), Positives = 263/550 (47%), Gaps = 82/550 (14%)
Query: 25 KQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTV 81
K++ TP+Q+ AI NILV+A+AG+GKT V++ERI+ ++ V+++ L + TFT
Sbjct: 6 KREWTPDQLAAIRARRANILVAAAAGAGKTAVLVERIIQRLTDPEDPVSLENLLVVTFTE 65
Query: 82 KAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
AA E+++R+ + + + + L QLL L A I T+ +F ++ Y Y L
Sbjct: 66 AAAAEMRQRIGAALEAAVARDPEN---EALRRQLLLLNRAHISTIHSFCLWVLRTYFYRL 122
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQI 200
+ P FR++ D +E DL++ +V D + + + T L + G + +N +
Sbjct: 123 DLDPGFRVM-DPAEVDLMQLEVMDRVLEEAFAAEPDGGPVTDLADSLGG--RGDANLVDL 179
Query: 201 IYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVT-D 259
+ ++++FS++ P+ WL + ++YK P + + + Q L L++
Sbjct: 180 VLRVWEFSRSLPWPEAWLEQV----TSSYKVTPETPLESLPWYGELRQMITLELQEAAWY 235
Query: 260 LEDYKQVTAKGTPTAAYQRHL--------KMIEQLQDWVLHFDSLYGRDG---LGKLAND 308
LE +Q A A Y +L +++E++ D L ++ L + G+L
Sbjct: 236 LEQARQAAAAPGGPAVYLDNLENEKEQVTRLLEEVGD--LPWEELNAKLAAVHFGRLK-- 291
Query: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRG------------LKHLETIFKYQ-DQSLPL 355
G DV PV + +LR L E + + ++S L
Sbjct: 292 ----AARGEDVD------PVLKERAGKLRNQARDLLYALKEDLCRDEAAVRAELERSGEL 341
Query: 356 LQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDA-------------IRQL 402
+ L F +AK + N +FSD+ H +++L + A +RQ
Sbjct: 342 VATLVGLVRRFDAALREAKGRRNLIDFSDLEHLCLRVLLDEGAGPGRLQPSDVALELRQ- 400
Query: 403 YIDKYHEVMVDEYQDNNHTQERMLELLSNG----RNRFMVGDIKQSIYRFRQADPQIFNQ 458
++ EV+VDEYQD N Q+ +L L+S N FMVGD+KQSIYRFR A+P +F
Sbjct: 401 ---RFAEVLVDEYQDINTVQDAILALVSRQDVAENNLFMVGDVKQSIYRFRLANPDLFLA 457
Query: 459 KFKDFQEHPEHG--KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS 516
K++ + E E G + ILLK NFRS+ V+D N +F + VGE+ YD LV
Sbjct: 458 KYRQYPEG-EGGPNRRILLKANFRSRQGVVDGVNFIFRQVFSPLVGELEYDAAAALVG-- 514
Query: 517 SAQKIPYPQN 526
+ YP+N
Sbjct: 515 ---RAGYPEN 521
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 1005 LPTVRTPSQIKKFYEPVMETEG-VEVMQTSYQTKPKFELPQFSKKAKQDPTAL--GSSVH 1061
LP T + +K+ ++ E E + + ++ +P F ++ Q TA G++ H
Sbjct: 1190 LPVKLTVTDLKRRFDVFNEGETPLRPGENTFTRRPAF------LQSHQGLTAAERGTATH 1243
Query: 1062 ELMQRLHLSEQVSLEDILTALAELSVEENV-----KKAIQVDKILHFFQTSQLGKLIQAN 1116
++Q + LS V+ E + L E+ VE + A+ + I+ FF + LGK + A
Sbjct: 1244 LVLQHVDLSRPVTGESLAGLLQEM-VEREILTPEQAAAVDIRAIVTFF-AAPLGKRLLAR 1301
Query: 1117 ADKVYREAPFAM----------LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFT 1166
++V RE PF++ L A+ A+GE +V+GIID + ++ +L D+KT +
Sbjct: 1302 WEQVKRELPFSLAVPAVELYPGLPAEAAAGEIILVQGIIDCLVEEEDGFLLLDFKTGRIP 1361
Query: 1167 NSQAIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGG 1204
YR Q+ Y +A+ +N + +L L G
Sbjct: 1362 PDPLAA--YREQVRFYTRAVETIFNRNVKEVHLYFLDG 1397
>gi|148989180|ref|ZP_01820570.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
gi|147925403|gb|EDK76481.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
Length = 141
Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats.
Identities = 90/136 (66%), Positives = 107/136 (78%)
Query: 1 MTFKPFLTDQEIASLQIQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIER 60
M PFL+++EI LQ EA S K+QK+T EQIEAIYTSG NILVSASAGSGKTFVM ER
Sbjct: 1 MKLIPFLSEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAER 60
Query: 61 IMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQT 120
I+D++ RG+ I QLFISTFTVKAA ELKERLEKKI+++++ T+D LKQ L QL L
Sbjct: 61 ILDQLARGIEISQLFISTFTVKAATELKERLEKKISKKIQETDDVDLKQHLGRQLADLPN 120
Query: 121 ADIGTMDAFTQKLVTQ 136
A IGTMD+FTQK+ Q
Sbjct: 121 AAIGTMDSFTQKIPWQ 136
>gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus
Kuenenia stuttgartiensis]
Length = 1198
Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats.
Identities = 287/1293 (22%), Positives = 506/1293 (39%), Gaps = 270/1293 (20%)
Query: 35 AIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTID-------QLFISTFTVKAAGEL 87
A+ NI+++A AG+GKT ++++RI+ +L ++ ++ TFT KAA E+
Sbjct: 43 AVSEQHKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPILKIIALTFTEKAASEM 102
Query: 88 KERLEKKITEQL-------RLTNDTALKQFLS------------------EQLLGLQTAD 122
K RL +++ + + R + + F+S + L + A
Sbjct: 103 KIRLMEELEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQSLADMDKAM 162
Query: 123 IGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTK 182
I T+ +F ++ + G++P F + + VF+DLF + D EL
Sbjct: 163 ICTIHSFAAYILRMFPIESGVAPGFTVDE---------GSVFEDLF-EKEWPDWLELELS 212
Query: 183 LVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKD 242
L K++ ++ ++ R LE A DF+ IP
Sbjct: 213 LTS------KNTVTWKNVL-------------TRTELETIKSFAKRLSDFT-IP------ 246
Query: 243 FLNTLQETA--LALRDVTDLEDYKQVTAK----GTPTAAYQRHLKMIEQLQDWVLHFDSL 296
L+TL + A+ DV + A G P K++ QLQ+++ F+ L
Sbjct: 247 -LDTLTQKTGDPAVLDVLLNSYCDSINALLLKCGKPDN------KLLLQLQEFLTIFNEL 299
Query: 297 --YGRDGLGKLANDIATLIP---SGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQ 351
G L L + I SG + V + + LR L+ ++ F
Sbjct: 300 KTQGFHYLSSLHYNFGKTISKAKSGWEEADVLVAQDIVKKCRILLRKLQRVDESF----- 354
Query: 352 SLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEN--DAIRQLYIDKYHE 409
+ + L F K + Q + + F + A +L+ N +IR +
Sbjct: 355 ----ITTALNLVLPFCKTFRQTYLSQGYISFDGLLTLARNLLQNNAYRSIRTSLKKNFSA 410
Query: 410 VMVDEYQDNNHTQERMLELLSNGRNR---------------FMVGDIKQSIYRFRQADPQ 454
++VDE+QD + Q ++ LS N F+VGD KQSIY FR+AD +
Sbjct: 411 ILVDEFQDTDPIQYDIILFLSEMVNHHSDTIHGIPLEPGKLFIVGDPKQSIYSFRRADIE 470
Query: 455 IFNQKFKDF--QEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQL 512
+ K E P + L ENFRS S +++A N +F GE + + L
Sbjct: 471 AYEHVVKQICNNEAP-----LSLLENFRSHSGIVNAVNDLF--------GEKIITEQQGL 517
Query: 513 ------VAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIR 566
+ Q P+ + E I D ++L E + K + +
Sbjct: 518 QPKYIPIHAKRIQSDPFQRIE----IISVSDTNGEELTAEAAREAEADWIAKWIKNNVFY 573
Query: 567 LHNEE---------KVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEV 617
+ + K++++DI LL+ S T+ +++F ++ IP + +G E+ + + EV
Sbjct: 574 DNGGDTSADAATSYKLKYKDIALLLRSFTQIRPYVESFKEHDIPFIAEG-EKYFYTTQEV 632
Query: 618 MVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARN 677
+ ++ LR+I+NP + ALV LRSP ++++ L + +L D +++ + + ++
Sbjct: 633 IDFMNLLRTIENPYDTIALVGTLRSPFAGLTDNEIYLLKINDLLD-YRKTISDNID---- 687
Query: 678 GQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSE 737
+ A + F+ + S + + LI +I ND + S + E
Sbjct: 688 ------------IDATIGDFYSFLRKYNVRSRIIPVSHLISEIINDPRFAGITASAWQGE 735
Query: 738 QRQANLYALALRADNFEKTGFKGLSRFIRMIDKIL-----ENQNDLADVEVALPKNAVTL 792
Q+ ANL A E+ L FI + K + E ++ L+D + + V +
Sbjct: 736 QKLANLKKFYRTACKLEQIQGISLKHFINNMKKYIDEAREEGESPLSDETL----DVVKI 791
Query: 793 MTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTV 852
+TIHKSKGLEF V + N+ + ++ T + N + E+ L +
Sbjct: 792 LTIHKSKGLEFPVVILGNLHGEAKKENETLDSVAFDWNTSTTGIVLGKGEQQLRNLQSII 851
Query: 853 KVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQ----------EKL 902
L ++N+R T E+ R+LYVAMTR++++L L G + L
Sbjct: 852 ------LENKINER-----TWEEEKRVLYVAMTRAKERLILTGALKDNDKSYIGLIMKSL 900
Query: 903 GDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDKMGSL 962
D YD N + + F + + +E F S
Sbjct: 901 SDAYDISLNNEPETPSGHVRKIVFGNSEIFLENFNYTGARRFV---------------SK 945
Query: 963 EAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFYEPVM 1022
AE+ +D D R +D R M EK P +PS + + PV
Sbjct: 946 TAEKTWDIDWNSFVRIWND--RKQSMFAETEK-----------PLFTSPSALSEEISPV- 991
Query: 1023 ETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQV-SLEDILTA 1081
Y+T + ++ ++ A+GS H+++++ + +L D++T+
Sbjct: 992 ----------HYETPTHNKHINSAEIQQEYAAAIGSLCHQILEKWDFQGTLQALYDLITS 1041
Query: 1082 LAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPAS----GE 1137
SV + A I+H +T + L K Y E A + E
Sbjct: 1042 ----SVTIHFTNASLHHTIIHLIKTEAVTILTAFFHSKAYNELKNARILGREIPILLHWE 1097
Query: 1138 DYVVRGIIDGYILFDNRIVLFDYKT-------------------DKFTNSQAIK------ 1172
++RG ID F+N+I++ DYKT D F+N++ I
Sbjct: 1098 GQIMRGTIDIIYEFENQIIIADYKTDYASSIEDNPALTNTCHEEDAFSNAEKINMNISSP 1157
Query: 1173 ---ERYRGQMTLYAQALSQSYNIQQVDSYLILL 1202
+Y Q T+Y +A+ + I LI L
Sbjct: 1158 TYTPKYHHQKTIYTEAVKRCLKINNPLFKLIFL 1190
>gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
thermophilum IAM 14863]
gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
thermophilum IAM 14863]
Length = 1371
Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats.
Identities = 113/383 (29%), Positives = 181/383 (47%), Gaps = 82/383 (21%)
Query: 354 PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEN----------DAIRQLY 403
P L+ L +F++ + +AK ++A +F+D+ A+Q+L ++ D R L
Sbjct: 341 PHLRTLGGVVREFAEAFREAKAAQSAIDFNDLERLALQLLRDSTSTPDRLVPSDVARDLR 400
Query: 404 IDKYHEVMVDEYQDNNHTQERMLELLS-NGR----NRFMVGDIKQSIYRFRQADPQIFNQ 458
+Y E++VDEYQD N Q+ +L L++ +G+ NRFMVGD+KQSIYRFR ADP +F
Sbjct: 401 A-RYREILVDEYQDINGVQDAILTLVARDGQEGPPNRFMVGDVKQSIYRFRHADPGLFLA 459
Query: 459 KFKDFQ------EHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQL 512
K+ ++ E G I+L NFRS+ V++A N +F +M GE+ YD +L
Sbjct: 460 KYGAYRPWAGAPEPGAAGARIVLGANFRSREGVVNAVNFLFRQIMSARAGELDYDRDAEL 519
Query: 513 VAGSSAQKIP-----YPQNETQVL-----------------------------IYDTKDQ 538
V + +P P E +L + D
Sbjct: 520 VYRAGYPPLPGEEAAEPPVELHLLDGEEQGPADGAGSGQAPAASGPEAASGDGVAGEADG 579
Query: 539 QNQDLAVEDDSNQISLG-EVKLVAKEI-----------------IRLHNEEKVQFEDITL 580
+ +D A+ + ++ ++ E +L+A I +L +Q+ DI +
Sbjct: 580 EEEDPALAELADLTAMEREARLIAARIRAMVDGTADQPPVQVWDRKLKTYRPLQYRDIAI 639
Query: 581 LVSSRT-RNDGILQTFDDYGIPL---VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYAL 636
L+ + T R + I++ GIP V+ G Y ++ EV V L L+ +DNPL D L
Sbjct: 640 LLRATTGRINTIIEVLSQSGIPAYGQVSTG----YFQATEVQVFLSLLQVLDNPLQDIPL 695
Query: 637 VALLRSPMFAFDEDDLARLALQN 659
A+L SP+ DLAR+ L N
Sbjct: 696 AAVLHSPIVGLSAADLARIRLAN 718
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/208 (35%), Positives = 113/208 (54%), Gaps = 12/208 (5%)
Query: 689 ALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALAL 748
L L F E WR + L ++W+I + Y YVG +P QRQANL AL
Sbjct: 786 GLEGVLVRFLECLDRWRTLARRRPLSQVVWQILQETGYLHYVGGMPGGAQRQANLLALYE 845
Query: 749 RADNFEKTGFKGLSRFIRMIDKILENQNDLADV-EVALPKNAVTLMTIHKSKGLEFKYVF 807
RA F++ +GL RF+R I+++ Q+D+ + ++ V +M+IHKSKGLEF VF
Sbjct: 846 RAREFDQFARQGLFRFLRFIERLQAEQSDMGTAPALGEGEDVVRIMSIHKSKGLEFPVVF 905
Query: 808 ILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRE 867
+ + FS +D+ L+L+R G G + + P ++ TL Y +
Sbjct: 906 VAGLGSSFSDRDLRGDLLLNRDLGFGPQVVD-----------PGTRLKYPTLAYHAVREV 954
Query: 868 LRLATLSEQMRLLYVAMTRSEKKLYLVG 895
RLA L+E++R+LYVA+TR+ ++L LVG
Sbjct: 955 TRLANLAEELRVLYVALTRARERLVLVG 982
Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 8/199 (4%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRG---VTIDQLFISTFTVKAAG 85
TPEQ +AI G ++LV+A+AGSGKT V++ERI+ +++ + +DQL + TFT AA
Sbjct: 10 TPEQEQAITARGADVLVAAAAGSGKTAVLVERIIRRLVDERDPLDVDQLLVVTFTEAAAT 69
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+++R+ + L + + L QL L A I T+ +F LV QY Y LG+ P
Sbjct: 70 EMRDRIGAALQAALAGNPEN---ERLQRQLALLGRASISTLHSFCLSLVRQYFYRLGLDP 126
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
++ + E LL+++V D LF ++ F LV + G R D R ++ IY
Sbjct: 127 AVSVMGEH-EALLLRHEVLDQLFARRFDEEEDGPFHALVDRYGGGR-DDEGLRNLVLAIY 184
Query: 206 DFSQATDNPQRWLLENFLK 224
D QA P +WL E+ +
Sbjct: 185 DHMQALPWPDQWLEESLAR 203
Score = 60.5 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 1020 PVME-TEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDI 1078
PV E E +++ +P+F Q ++A PT G++VH +MQ L LS + E +
Sbjct: 1171 PVEEPAPSTEPSSSTFAARPRFL--QQDRRA-LSPTERGTAVHVVMQHLDLSRPLDAEGV 1227
Query: 1079 LTALAELSVEENVKKAIQVDKILHF----FQTSQLGKLIQANADKVYREAPFAM------ 1128
LAE+ VE + Q + F S LG I + D+V +E F +
Sbjct: 1228 GRQLAEM-VERELLTPQQAAAVDAEAIADFFASPLGLRILQSRDRVSQELSFTLAVPAAE 1286
Query: 1129 ----LQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184
L + A+G+ +V+G+ID + ++ VL DYKTD+ QA +RY Q+ Y +
Sbjct: 1287 VYGDLPPEAAAGDVVIVQGMIDLLLEEEDGYVLVDYKTDRRDPVQA-AQRYTTQIRFYRR 1345
Query: 1185 ALSQSYNIQQVDSYLILLGGEK 1206
A+ + ++YL L +
Sbjct: 1346 AVEEILGRPVKEAYLHFLASRR 1367
>gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
Length = 1130
Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats.
Identities = 207/913 (22%), Positives = 380/913 (41%), Gaps = 144/913 (15%)
Query: 356 LQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEY 415
+VL+ +L S+ Y + ++F + I++L N+ +R+ Y +++ ++VDE+
Sbjct: 237 FRVLRLISLIASELYEAETIDNFEYDFKGVLEKTIEVLNNNEEVRKYYQERFKYIIVDEF 296
Query: 416 QDNNHTQERMLELLSNGRNR-FMVGDIKQSIYRFRQADPQIFNQKFKDFQEH----PEHG 470
QD N Q + + + +N F VGD KQSIYRFR AD +F + +F++ P+
Sbjct: 297 QDTNELQRMIFDFIHTDKNYIFYVGDRKQSIYRFRGADVSVFVKTMDEFEKRAKISPDKY 356
Query: 471 KLILLKENFRSQSEVLDATN-----SVFTHLM------------DEAVGEI--------- 504
+++ L+ N+RS ++D N S+F + + ++ + EI
Sbjct: 357 RILSLQTNYRSHEFLVDYFNKVSRDSIFRNEIYDMLSNLNGFNSNKPISEISDDEAKLYL 416
Query: 505 ----------LYDDTHQLVAGSSAQKIPYPQNETQVLI-----------YDTKDQQNQDL 543
LYD L S I ++E I Y + ++ +
Sbjct: 417 HEAFRLRYRDLYDKLWFLDEDISNAHIKKLESEVIPQIDFLNESISRVSYLSIVSLDEKV 476
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEE------KVQFEDITLLVSSRTRNDGIL-QTFD 596
+ ED++N +++ LV KEI E+ KV+++DI +L + I +TF
Sbjct: 477 SPEDEANLVAMAIKNLVGKEITIFDKEKNDYVTRKVEYKDIAILSYKLAGIESIYRETFG 536
Query: 597 DYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF-------AFDE 649
+ IPL G + + K E+ ++ L I NP NDY V +P +FD+
Sbjct: 537 KFNIPLYVVKG-RGFYKRPEIRAVISALSVIQNPNNDYNFVEFFLTPFVESTDFSPSFDK 595
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
+ + N + L E E Q + +L E L + E + E
Sbjct: 596 FKILHKIVLN-----ARKLRENGERISFFQSAK-KLGKEDLPDYVSEMIELVQKYDELKY 649
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+++ N+ +Y + P S QR N+ L +A F + S IR++
Sbjct: 650 FLRPAEVLKGFINESYYLAKLSKFPNSVQRLKNVKKLLDQATEFNQQA-STFSELIRLLS 708
Query: 770 KILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
K+ E Q A EV+ N V +MT+H SKGLE+ VF++N F+ + S
Sbjct: 709 KVEELQETEAS-EVSEEDNVVKMMTVHASKGLEYNIVFLVN--NNFNEMESDEVFFPSDD 765
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATL---SEQMRLLYVAMTR 886
NG +I E ++K +++ Y+ K EL + +E +R +YVA+TR
Sbjct: 766 NGGRYIHIKRFIENYKDKF------NINKDEYKKLKGELEAELIYDETEILRKIYVAITR 819
Query: 887 SEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKT 946
+++ L++V + G + GK+ +L A +E FKT
Sbjct: 820 AKEMLFVVTYNTNSSRGKR--GKTAGQYL----------------------AHNE--FKT 853
Query: 947 SFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLP 1006
I D+ ++ + SL + +N K + I + ++ N YK I
Sbjct: 854 ITI-DKKQIDEMVKSLSISEFSGEEN-KKLLDEEKIRKQIEDFS-----NIGYKRYI--- 903
Query: 1007 TVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQR 1066
+P+ + + + E V ++ ++ +P F + KQD + E +R
Sbjct: 904 ---SPTLLYNITDEKSDKELVNELEVDFEEN----MPLFEGQEKQDILKIFEKNQEKQKR 956
Query: 1067 LHLSEQVSLEDILTALAELSVEENVKKAI----QVDKILHFFQTSQL-GKLIQA------ 1115
+ L +L E+ +N+ + + + +L+ + +L K+++A
Sbjct: 957 SKSEVSLLLSSLLETSREVIEGKNIHRRLMSVQRYPDLLNLVERGELPEKILKADVIKYL 1016
Query: 1116 --NADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKE 1173
N+DKV E + + ++ G+ Y + G+ D D +I + D+K+ + E
Sbjct: 1017 FENSDKVISE--WRIAKSVVIDGKKYTLFGVPDRVFFKDGKIYVVDFKSSYLKDGSEEVE 1074
Query: 1174 RYRGQMTLYAQAL 1186
+Y+ Q+ Y L
Sbjct: 1075 KYKFQLQFYMYML 1087
>gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
[Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB
[Wolbachia endosymbiont strain TRS of Brugia malayi]
Length = 1119
Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats.
Identities = 223/972 (22%), Positives = 399/972 (41%), Gaps = 218/972 (22%)
Query: 42 NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRL 101
++ V+ASAG+GKT ++I+R++ +L +F TFT AA E++ R+ +++
Sbjct: 11 SVWVNASAGTGKTKILIDRVLRLLLENKR--NIFCLTFTNAAANEMESRIHNILSKWAVC 68
Query: 102 TNDTALKQ--------------------FLSEQLLGLQTA-------------------- 121
+++ + FLS Q L L++
Sbjct: 69 SDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYLIQARRL 128
Query: 122 ---------DIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYR 172
I T+ AF KL++ + GI PN + SE L + VFD L +
Sbjct: 129 FSELENLDLTIQTVHAFCYKLISSFPAEAGIVPNCTL----SECKELHSIVFDKLLHNEA 184
Query: 173 TGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDF 232
D + F D + R ++Y + + N ++ + L +
Sbjct: 185 VQDSIK--------FIAAEVDENKLRDLLYTLCIKRSVSANNLEYV-KGKLSAPDEIHGL 235
Query: 233 SAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKM---------- 282
+ ++++ L + + R+ + + D +T+ A R K+
Sbjct: 236 QSEATEQIERLAEILSKGSKRDRNYSKMLD---LTSSSFIQVADTRIQKLDSSATRWNDI 292
Query: 283 -IEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKH 341
IE L L +S + + P G + + ++ VF H
Sbjct: 293 SIENLVKVFLKSESCEKKSISSIITKSTLEKFP-GAEQVIENIQNAVF----------TH 341
Query: 342 LETIFKYQDQSLPLLQVLQSFTLDFSKQYL---QAKMQENAF-EFSDIAHFAIQILEEND 397
+ I YQ + + SF LD K Y+ ++ +NA +++DI A +L D
Sbjct: 342 VRDINSYQ-----IFKRTSSF-LDIFKVYIDLYNSEKSKNALLDYNDIIDLATNLLSNPD 395
Query: 398 AIRQLYID---KYHEVMVDEYQDNNHTQERMLELLSN--------GRNRFMVGDIKQSIY 446
+ + K ++VDE QDN+ +Q +++ L + R F+VGD+KQSIY
Sbjct: 396 YKNWVLFNLDQKIDHILVDEAQDNSISQWKIIANLCDEFFIRNDEKRTLFVVGDVKQSIY 455
Query: 447 RFRQADPQIFN--QKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEI 504
RF+ A+P +FN Q++ + + L+++FRS E L + +F + + EI
Sbjct: 456 RFQGANPHLFNCMQQYFHTKSGGKDWISCQLEKSFRSTPETLTLVDRLFNNFRE----EI 511
Query: 505 LYDDTHQLVAGSSAQKIPYPQN-----ETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKL 559
+ D S + IPY +N E L+ K+++ Q L + + + +L
Sbjct: 512 SFVD-------SEIKHIPYRENDQGYVEIWPLLPRCKEEEQQALQIHLMHRKDYIITDRL 564
Query: 560 VAKEII-RLHN-----------EEKVQFEDITLLVSSRTRN---DGILQTFDDYGIPLVT 604
+A+ I ++HN ++ DI +LV R RN D ++ IP+V
Sbjct: 565 LAQAIAHKIHNWLNEGRILVAKNRHIEPRDIMILV--RQRNMLVDYVISELKKANIPVVG 622
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDN---PLNDYALVALLRSPMFAFDEDDLARLALQNLP 661
++Y + ++ + + D + + P ND AL L+SP+F F EDDL +A
Sbjct: 623 ----RDYFRIMDYIAVQDLIALTEFLLLPTNDLALANALKSPLFNFTEDDLFNIAY---- 674
Query: 662 DQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIY 721
D+ +Q+L+E+++N +E + +KL+ LS E L +L+ I +
Sbjct: 675 DRKEQSLWERLQN-----------YSEDIYSKLNDLIN--LSHIESPL--TLFTHILRTG 719
Query: 722 NDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
KF + NL FE + ++I+ EN ++ +
Sbjct: 720 KKKFAARLGLECFEVLDEFMNLVL------QFENPSLQAFVQWIK------ENNPEIKN- 766
Query: 782 EVALPKNAVTLMTIHKSKGLEFKYVFILNID------KKFSIQDMTSPLILSRQNGVGIK 835
++ +NAV +MTIHKSKGL+ VF+++ + + + M +P + + N
Sbjct: 767 DMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPKNSESIVLDAMGAPFLCGKNNNAYCD 826
Query: 836 YIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG 895
+ KRE +L +E +RLLYVA+TR+E +LY++G
Sbjct: 827 QV---------------------------KREKKLEDYNEYLRLLYVALTRAEDELYILG 859
Query: 896 KGSQEKLGDQYD 907
K +K G YD
Sbjct: 860 KEPVQK-GSWYD 870
>gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC
7942]
gi|23957809|gb|AAN40822.1| unknown [Synechococcus sp. PCC 7942]
gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 1061
Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats.
Identities = 210/911 (23%), Positives = 381/911 (41%), Gaps = 154/911 (16%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIM---DKILRGVTIDQLFISTFTVKA 83
K T EQ +A+ +G+ + V+A AG+GKT ++ +R + + V+ ++ + TFT KA
Sbjct: 2 KLTEEQRQAVQAAGS-VAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKA 60
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A EL+ R+ K + + +D +L+E ++ A I T + ++ ++ G
Sbjct: 61 AAELRSRIRKAVGNKWPDRSD-----WLAE----VEAAQISTFHSLCARICREHPAAAGQ 111
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
+F IL D + +L+ + V A D S F
Sbjct: 112 PADFTILDDLA----------------------GKLWQQTVLTAAMQELDPSCF-----D 144
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDY 263
+ D+S+ R LLE L + A+ ++ ++ L Q L + + D+
Sbjct: 145 VMDYSE-----WRSLLETLLDDPVRSQALLAVESEQWREVLAQAQRDRL--QQIQQSSDW 197
Query: 264 KQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYG---------RDGLGKLANDIATLIP 314
Q + A+++ + +Q+Q + D+L+ D KL A
Sbjct: 198 -QAAIEDLSGASWREADALSDQIQQILAWSDTLFDPANSNWQATYDEFIKLKLTQAGSAK 256
Query: 315 SGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ------DQSLPLLQVLQSFTLDFSK 368
+ A + + L RLR + L ++ + DQ + + ++ K
Sbjct: 257 NWGSADTAKLLRTQCKVLRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVL----K 312
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
K Q+ +F+D+ A++ LE ++A+R Y ++ VDE+QD N TQ ++L+
Sbjct: 313 SIDARKRQDRCLDFNDLERGAVRALE-SEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQA 371
Query: 429 LSNGRNRFM--VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L + ++ + VGD KQSIY FR A Q+F + Q G ++ L ++FR+ +L
Sbjct: 372 LWDPQHLILTLVGDEKQSIYGFRGAATQVFRNWQQ--QIQQHQGHIVTLSQSFRTHQTLL 429
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+ N VF ++ D +Q + S ++ P+P Q L+ + +++ + + A
Sbjct: 430 ETINQVFEPVL----------DPYQPL--RSDRQPPHPLPPIQQLVIEPEEKDSLEQARI 477
Query: 547 DDSNQISLGEVKLVAKEII---RLHNEEK-VQFEDITLLVSSRTRNDGIL-QTFDDYGIP 601
++ I+ + + ++ + N+ + + + DI +L R + + + + GIP
Sbjct: 478 QEATAIAQQIQTWIQQPLLVWDKPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIP 537
Query: 602 LVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLP 661
++ +GG + L++ + L + P ND AL LLRSP F +
Sbjct: 538 VLVNGG-GSLLETPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSD------------ 584
Query: 662 DQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIY 721
LY++ + + + + A +A + E L R L S L+ +
Sbjct: 585 ----AQLYQRAQQGKGWWSHRQERPDPAFAAAIK-ILEGLLRSR---FLESPLRLVQQFD 636
Query: 722 NDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM------IDKILENQ 775
Y + SLP++++ A+ ++ L F+R ++ +L
Sbjct: 637 RATGYSAVLASLPQAQRLLAD---------------WQALLTFLREQPQAHDLELLLRYW 681
Query: 776 NDLADVEVALPK------NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
L EV LP+ NAVTLMT+H SKGLE+ V I ++ K Q T ++ +
Sbjct: 682 KQLQQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIPDLTAKPRSQAET--VLFDTE 739
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
GV ++ P VK YQ K + A +E RLLYV TR+
Sbjct: 740 LGVALRQ-------------PYVK--EQAAAYQFFKYRKQQAEDAETRRLLYVGFTRARD 784
Query: 890 KLYLVGKGSQE 900
L L S E
Sbjct: 785 LLLLTSPKSAE 795
>gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
Length = 1171
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 206/833 (24%), Positives = 341/833 (40%), Gaps = 129/833 (15%)
Query: 400 RQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGR----NRFMVGDIKQSIYRFRQADPQI 455
RQ H +MVDE+QD + Q ++ L F+VGD KQSIYRFR+ADP++
Sbjct: 370 RQRAAAGIHYLMVDEFQDTDPVQSEIVRALCGKELLTGKLFLVGDAKQSIYRFRRADPEV 429
Query: 456 FNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAG 515
F+Q QE PE G+L L NFRSQ +L+ TN +F M L
Sbjct: 430 FHQL---RQEIPEKGRLP-LSTNFRSQPAILNFTNCLFASAMAHYY--------ESLTPF 477
Query: 516 SSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNE----- 570
Q P P E D D + D E +++ I+ +L+ E R+ ++
Sbjct: 478 DQQQHSPTPGIEFLFASPDDPDIKLADAIRETEADWIAARIRQLLEDETPRIWSKNPQSG 537
Query: 571 ----EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRS 626
+V+ DI +L S + + ++ + GG Y + E+ + + +
Sbjct: 538 ERELRRVEPGDICILFRSLSSVSLYEKALQEHNLDYYLVGGRAFYAQQ-EIYDLSNLCQY 596
Query: 627 IDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA-----RNGQGQ 681
+D+ ++ +L+ LLRSP F+ +D + + +H ++L M+ A R Q +
Sbjct: 597 LDSSDDELSLLGLLRSPFFSLSDDTIYAIT------RHAESLTAAMQVAPPDHVRPEQKR 650
Query: 682 QV---QLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQ 738
QV Q + + L K D + + +L + YD +++G ++
Sbjct: 651 QVRYAQAVLQELRTKKDRL--SLVELLNLALERTGYDA-------ALLNEFLG-----DR 696
Query: 739 RQANLYALALRADNFEKTGFKGLSRFI-RMIDKILENQNDLADVEVALPKNAVTLMTIHK 797
+ ANL L A NFE +G L F+ R+ D ILE + + + + LMTIH+
Sbjct: 697 KLANLRKLIELARNFEASGLFTLKDFVQRIRDSILEESKEELAATLPETSDVIRLMTIHQ 756
Query: 798 SKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMD 857
SKGLEF V + ++D++ Q + L + G + A+ V+ +
Sbjct: 757 SKGLEFPVVIVADMDRR--SQGASKDPFLHPEWGALLNLPAER------------GVTPE 802
Query: 858 TLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPV 917
+++++ + A E +RLLYVA+TR+ L L G YD + ++ + +
Sbjct: 803 NFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLILSA-------GLPYDRRVQSPWMKL 855
Query: 918 ADREHYLTFQDWLLAIEAAYAADELHFKTSF---ITDEDLTEDKMGSLEAEQAYDADNLK 974
R HF S D L MG+++ +Q + +
Sbjct: 856 LSR----------------------HFDLSTGLPTLDPYLGHFTMGNVQQDQIPEI-RVH 892
Query: 975 DNRQSDDITRALDMLEAVEKLNQHYKAAIH-----LPTVRTPSQIKKFYEPVMETEGVEV 1029
NR A + E K +Q + A P T +K + +EV
Sbjct: 893 LNRPQTATKPAKKIKEL--KPSQFWAALEQGSPGGYPETFTVFAPQKNRQSHFSVSHLEV 950
Query: 1030 MQTSYQTKPKFELPQFSKKAKQD------PTALGSSVHELMQRLH--LSEQVSLEDILTA 1081
Q P+ PQ+ + + D T LG+ H +++RL EQ L
Sbjct: 951 ADALIQELPE---PQYQRLSTADLLNADEATQLGTLTHSVIERLDPLKPEQSDRIVELVL 1007
Query: 1082 LAELSVEENVKKAIQVDKILHFFQTSQLGKLIQANADKVYREAPFAMLQADPASGEDYV- 1140
+ V + K + +I ++++ L A YRE F + + E V
Sbjct: 1008 FDQPQVAGDKLKPLIQQQIAAWYESEICSALKAARVH--YRELEFLLRLPATSDKESAVT 1065
Query: 1141 VRGIIDG-YILFDNRIVLFDYKTD----KFTNSQAIKERYRGQMTLYAQALSQ 1188
V G+ID Y D R V+ DYKT + + + I E Y Q+ +Y A+ Q
Sbjct: 1066 VTGMIDAVYQTDDQRWVVLDYKTGARLAQLADEELISE-YEFQLGVYTLAVEQ 1117
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 24 KKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQL---FISTFT 80
K+ T +Q AI T +I +SA AG GKTFV+ +R + I G D+L TFT
Sbjct: 3 KQPTYTDQQAAAINTRDVSIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSHIVAITFT 62
Query: 81 VKAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYT 140
+AA E+++R+ + +QL+ + + + GL +A I T+ +F ++ + +
Sbjct: 63 ERAAREMRDRIRETCLDQLKNCPPEEVNHW-QAVIRGLDSARISTIHSFCTSILRSHAVS 121
Query: 141 LGISPNFRILQDKSEQDLLKNDVFD 165
+ P+F +L+ + L+ V +
Sbjct: 122 ARLDPHFGLLEQGTSDTFLRKVVHE 146
>gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
Length = 781
Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats.
Identities = 147/536 (27%), Positives = 239/536 (44%), Gaps = 111/536 (20%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERML-E 427
+Y++ + NAF+F D+ + +++ E N + +LY D++ +MVDEYQD NH Q M+ +
Sbjct: 172 EYMKRLRKFNAFDFDDLIYKVVELFEHNPDVLELYQDRFRYIMVDEYQDTNHIQFLMVKQ 231
Query: 428 LLSNGRNRFMVGDIKQSIYRFRQAD-PQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L S RN +VGD QSIY+FR A+ I N + +E+P+ K++ L++N+RS +L
Sbjct: 232 LASKYRNLCVVGDDDQSIYKFRGANITNILNFE----KEYPD-AKVVKLEQNYRSCGNIL 286
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
A N+V H G + + Q + + L+++ Q++D +E
Sbjct: 287 AAANAVIKH-----------------NEGRKDKALWTDQGDGEKLVFN----QSEDEYME 325
Query: 547 DDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDG 606
D V EIIRL Q++DI LL + ++ + + GIP G
Sbjct: 326 ADR----------VVNEIIRL-TANGAQYKDIALLYRTNAQSRILGEKLVMRGIPHRVYG 374
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE---DDLARLALQNLPDQ 663
G QN+ + E+ ++ L+ ++N +D L ++ P + D +A A N
Sbjct: 375 G-QNFYERKEIKDVMAYLKVVNNSTDDTYLRRIINVPKRGIGDATVDKVAAFAAAN---- 429
Query: 664 HKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF----SLLNSLYDLIWK 719
L E M+ G Q + AK+ F E +RE L++L+D +
Sbjct: 430 -DMTLMEAMQIIEQIPGLQRSV------AKISGFVELIDGFREIIEEQEPLSTLFD---R 479
Query: 720 IYNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQND 777
I D Y D + + +S R N+ L R FE T ++ + + D L ++ D
Sbjct: 480 ILEDTGYEDELIAEHTDESMARLENIDELRNRVVQFE-TDYEEATLADFLEDIALVSETD 538
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYI 837
+++ N V LMTIH SKGLEF YVF+
Sbjct: 539 ----KMSDDDNMVKLMTIHGSKGLEFPYVFLCG--------------------------- 567
Query: 838 ADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
+EE++ P+ +N + L E+ RL YV +TR+ KKLYL
Sbjct: 568 ------MEERIFPSAMA--------INSDDED--ALEEERRLCYVGITRAMKKLYL 607
>gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301]
gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 1061
Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats.
Identities = 209/911 (22%), Positives = 381/911 (41%), Gaps = 154/911 (16%)
Query: 27 KRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIM---DKILRGVTIDQLFISTFTVKA 83
K T EQ +A+ +G+ + V+A AG+GKT ++ +R + + V+ ++ + TFT KA
Sbjct: 2 KLTEEQRQAVQAAGS-VAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKA 60
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A EL+ R+ K + + +D +L+E ++ A I T + ++ ++ G
Sbjct: 61 AAELRSRIRKAVGNKWPDRSD-----WLAE----VEAAQISTFHSLCARICREHPAAAGQ 111
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYK 203
+F IL D + +L+ + V A D S F
Sbjct: 112 PADFTILDDLA----------------------GKLWQQTVLTAAMQELDPSCF-----D 144
Query: 204 IYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDY 263
+ D+S+ R LLE L + A+ ++ ++ L Q L + + D+
Sbjct: 145 VMDYSE-----WRPLLETLLDDPVRSQALLAVESEQWREVLAQAQRDRL--QQIQQSSDW 197
Query: 264 KQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYG---------RDGLGKLANDIATLIP 314
Q + A+++ + +Q+Q + D+L+ D KL A
Sbjct: 198 -QAAIEDLSGASWREADALSDQIQQILAWSDTLFDPANSNWQATYDEFIKLKLTQAGSAK 256
Query: 315 SGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQ------DQSLPLLQVLQSFTLDFSK 368
+ A + + L RLR + L ++ + DQ + + ++ K
Sbjct: 257 NWGSADTAKLLRTQCKVLRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVL----K 312
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
K Q+ +F+D+ A++ LE ++A+R Y ++ VDE+QD N TQ ++L+
Sbjct: 313 SIDARKRQDRCLDFNDLERGAVRALE-SEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQA 371
Query: 429 LSNGRNRFM--VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L + ++ + VGD KQSIY FR A Q+F + Q+H ++ L ++FR+ +L
Sbjct: 372 LWDPQHLILTLVGDEKQSIYGFRGAATQVFRNWQQQIQQHQG--HIVTLSQSFRTHQTLL 429
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+ N VF ++D +Q + S ++ P+P Q L+ + +++ + + A
Sbjct: 430 ETINQVFEPVLD----------PYQPL--RSDRQPPHPLPPIQQLVIEPEEKDSLEQARI 477
Query: 547 DDSNQISLGEVKLVAKEII---RLHNEEK-VQFEDITLLVSSRTRNDGIL-QTFDDYGIP 601
++ I+ + + ++ + N+ + + + DI +L R + + + + GIP
Sbjct: 478 QEATAIAQQIQTWIQQPLLVWDKPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIP 537
Query: 602 LVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLP 661
++ +GG + L++ + L + P ND AL LLRSP F +
Sbjct: 538 VLVNGG-GSLLETPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSD------------ 584
Query: 662 DQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIY 721
LY++ + + + + A +A + E L R F S L+ +
Sbjct: 585 ----AQLYQRAQQGKGWWSHRQERPDPAFAAAIK-ILEGLLRSRFFE---SPLRLVQQFD 636
Query: 722 NDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRM------IDKILENQ 775
Y + SLP++++ A+ ++ L F+R ++ +L
Sbjct: 637 RATGYSAVLASLPQAQRLLAD---------------WQALLTFLREQPQAHDLELLLRYW 681
Query: 776 NDLADVEVALPK------NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQ 829
L EV LP+ NAVTLMT+H SKG E+ V I ++ K Q T ++ +
Sbjct: 682 KQLQQAEVVLPRPVLKAGNAVTLMTLHGSKGSEWPVVIIPDLTAKPRSQAET--VLFDTE 739
Query: 830 NGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEK 889
GV ++ P VK YQ K + A +E RLLYV TR+
Sbjct: 740 LGVALRQ-------------PYVK--EQAAAYQFFKYRKQQAEDAETRRLLYVGFTRARD 784
Query: 890 KLYLVGKGSQE 900
L L S E
Sbjct: 785 LLLLTSPKSAE 795
>gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
HTCC2155]
gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
HTCC2155]
Length = 1198
Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats.
Identities = 213/906 (23%), Positives = 362/906 (39%), Gaps = 169/906 (18%)
Query: 44 LVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITE---QLR 100
L+ ASAG+GKT+ + + IL+G + ++ + TFT A EL++R+ K +++ Q+R
Sbjct: 18 LIEASAGTGKTYSIANIFLHFILKGRDVSEILVVTFTEDATKELRDRVRKNLSKALLQIR 77
Query: 101 ---LTNDTALKQF-------------LSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGIS 144
D LK L L+ A I T+ F Q+++ + + +
Sbjct: 78 GDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFDQAVISTIHGFCQRMLKENAFESHST 137
Query: 145 PNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKI 204
+ ++ D S+ L +++ +D F + D F D+ + +I K+
Sbjct: 138 FDMELVTDDSK---LIDELVED-FIRIESYDHQSAFNY----------DAEQLKSLI-KL 182
Query: 205 YDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYK 264
Y QA + + + LE + F + + D + LQ R
Sbjct: 183 YK-GQAIEEAEEFDLEA------RKQKFIELYKAHGHDQIEVLQNNKGMSRT-------- 227
Query: 265 QVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGV 324
Q++ ++ + D++ H D I L S + +
Sbjct: 228 ------------QKNPYLLSKFPDYIEHLKLYCKGDERPTALKAIVALSQSSINSNMKSK 275
Query: 325 KYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSD 384
K P L L Y D+ + Q F F ++Y K + N F D
Sbjct: 276 KVPPTHELFEAADQLAEC-----YSDKFIK-----QRFLKSFREKYEAKKEKLNVMTFDD 325
Query: 385 IA---HFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNR------ 435
+ H A+ + N + L D + +VDE+QD + Q ++ + L ++
Sbjct: 326 LIIKLHEALVRDQANGPLHSLIRDNFKVALVDEFQDTDPIQYQIFKSLFGDKSHATEHAF 385
Query: 436 FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTH 495
+M+GD KQSIYRFR AD + Q D E L++N+RS++ ++DA N F+
Sbjct: 386 YMIGDPKQSIYRFRGADIFAYLQAKNDADEQ------FTLQDNYRSEAAMVDAVNHFFSQ 439
Query: 496 L-MDEAVGEILYDDTHQLV-------AGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
DEA ++ + A + KI Q+ Y + +++DL+ D
Sbjct: 440 RGADEAFAFAPAHESEGITFEPVGAKADKNTLKITGQPESLQLRWY--RADEDKDLSKTD 497
Query: 548 DSNQISLGEVKLVAKEIIRLHN-----------EEKVQFE--DITLLVSSRTRNDGILQT 594
N + LV +EII L N EEK + DI +LV+ + + Q+
Sbjct: 498 LQNLMP----SLVTEEIISLLNKSQQGSAYFESEEKQALKPGDICILVNKNNQATAMKQS 553
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
++ GIP V N KS E + L ++ +P D +L+ LL S +F +++
Sbjct: 554 LNENGIPAVV-AKSGNVFKSAEANALERFLNAVIDP-KDSSLIPLLLSELFTLTAEEIKE 611
Query: 655 LALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLY 714
L G ++ +L+TE F + W + L +L
Sbjct: 612 L----------------------GDQERFELLTE--------FVDYHREWEKRGFLRTLQ 641
Query: 715 DLI--WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKIL 772
I ++Y D + E+ +NLY L E++ G S +R + +
Sbjct: 642 KFIDRHQLYTRTLEQD------QGERSLSNLYQLREILHEEEQSKGLGPSGLLRFLQE-- 693
Query: 773 ENQNDLADVE----VALPKNAVTLMTIHKSKGLEFKYVFILNI-DKKFSIQDMTSPLILS 827
+ Q D D + + NAV +MTIHKSKGLEF VF + + F S +
Sbjct: 694 KTQADKVDDQYLQRLETDDNAVKIMTIHKSKGLEFPVVFCPYMWSESFEESSYGSFGESN 753
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
++N E ++ L ++ + D Q + R LSE++RLLYVA+TRS
Sbjct: 754 KKNDF---------EYHDDSRLASLSIDPDEEFRQEKRYLWRREILSEKLRLLYVALTRS 804
Query: 888 EKKLYL 893
+ YL
Sbjct: 805 AHRCYL 810
>gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
gi|118504568|gb|ABL01051.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
Length = 762
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 134/522 (25%), Positives = 229/522 (43%), Gaps = 101/522 (19%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNG-RNRF 436
NA +F D+ +++LE+ +RQ +++ +MVDEYQD N Q R++ LL+ RN
Sbjct: 183 NALDFGDMLIQTVRLLEQFPEVRQRCQERFQWIMVDEYQDTNPVQYRLIRLLAGERRNLC 242
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
+VGD QSIY +R AD + + KDF + ++ L++N+RS + +L A +V +
Sbjct: 243 VVGDDDQSIYSWRGADIRNILEFEKDFPDV----AVVRLEQNYRSTTTILKAAGAVVSRN 298
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
+ G+ L+ + + +KI Y + VE D E
Sbjct: 299 IGRR-GKTLWTENPE------GEKIRYHR-------------------VESDRE-----E 327
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+LVA+EI+ L + + E++ + + ++ + + +P GG + Y + +E
Sbjct: 328 ARLVAREIVSLRS-RGIPLEEMAVFYRTNAQSRLVEEALVSEALPYHIVGGVRFYAR-ME 385
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V +L LR +DNP ++ +L ++ P + R++ Q + E A
Sbjct: 386 VKDILAYLRILDNPADEISLKRIINVPSRGIGGATIDRIS-QRVASSGASFYAAMAECAG 444
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKS 736
+G L+ A++ +F + +RE L L +L + + Y +
Sbjct: 445 SG------LLGSGPRARVASFVDMMERFREMVALRGLPELCQTVMEESGYLARLRESRDQ 498
Query: 737 E--QRQANLYALALRADNF-EKTGFKGLSRFIRMIDKILENQNDLADVEV-ALPKNAVTL 792
E +R NL L + F EK GLS F LE + ++D+E K +VTL
Sbjct: 499 EDSERLENLEQLLAAMEEFCEKEPQAGLSAF-------LEQVSLVSDLEQGGQGKPSVTL 551
Query: 793 MTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTV 852
MT+H +KGLEF+ VF++ +EE+L P V
Sbjct: 552 MTLHAAKGLEFRAVFMIG---------------------------------MEERLFPHV 578
Query: 853 KVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+ D L + E+ RL YV MTR+ ++LYL+
Sbjct: 579 RALDD------------LDGMEEERRLCYVGMTRARERLYLL 608
>gi|109647240|ref|ZP_01371144.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
DCB-2]
gi|109642486|gb|EAT52040.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
DCB-2]
Length = 755
Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats.
Identities = 143/565 (25%), Positives = 234/565 (41%), Gaps = 119/565 (21%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
YL+ + NA +F DI +++ EN + Y DK+ ++VDEYQD NH Q ++ LL
Sbjct: 175 YLKKLLANNALDFDDIIMLTVRLFRENPEVLSQYQDKFRYILVDEYQDTNHAQYALVNLL 234
Query: 430 SNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN +VGD QSIY FR AD Q DF+ K + L++N+RS +L A
Sbjct: 235 AKKYRNLCVVGDDDQSIYMFRGADV----QNILDFERDYPEAKTLKLEQNYRSTKSILQA 290
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET-QVLIYDTKDQQNQDLAVED 547
NSV + ++T + +K + +NE Q ++Y D ++
Sbjct: 291 ANSV------------VQNNTER------KEKSLWTENEDGQPIVYYVADNEHD------ 326
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E + + + I RL N E +F + +L + ++ I + F GIP G
Sbjct: 327 --------EARYMGERIQRLLNVEGRKFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSG 378
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
+ Y + +E+ +L LR + NP + + +L P E L ++ L +Q
Sbjct: 379 LKFY-ERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKI-LDYANEQEMPV 436
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL-NSLYDLIWKIYNDKFY 726
L ME + + L AF R + +S+ L+ ++ Y
Sbjct: 437 LDAIME------ADYIPELQSRAKKPLLAFAHLMQELRALAAAESSVTKLVEEVLKRTGY 490
Query: 727 YDYVGS--LPKSEQRQANL----------------YALALRADNFEKTGFKGLSRFIRMI 768
+D + S P++E R NL Y A+ + E GL+ F+ +
Sbjct: 491 WDNLVSDKSPEAEARLENLREFLSVTAEYDEKADNYETAVVQEGIEDALVPGLTGFLEQV 550
Query: 769 DKILE-NQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
+ + + D AD +AV +MTIH +KGLEF VF+
Sbjct: 551 SLVAQIDSLDQAD-------DAVVMMTIHSAKGLEFPVVFLGG----------------- 586
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+EE + P+ + +D + L+E+ RL YVA+TR+
Sbjct: 587 ----------------MEEGIFPSSRSMLDPV------------LLAEERRLCYVAITRA 618
Query: 888 EKKLYLVGKGSQEKLG-DQYDGKSE 911
++LYL + G QY+ SE
Sbjct: 619 RERLYLAYAQQRMLYGRTQYNRPSE 643
>gi|114568640|ref|YP_755320.1| UvrD/REP helicase [Maricaulis maris MCS10]
gi|114339102|gb|ABI64382.1| UvrD/REP helicase [Maricaulis maris MCS10]
Length = 1183
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 222/975 (22%), Positives = 369/975 (37%), Gaps = 180/975 (18%)
Query: 17 IQEAQSDKKQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFI 76
++ A +D+++ PE ++ V A+AGSGKT V+++R+++ +L G + +
Sbjct: 11 LKSASADQQRAARPE---------ASVFVEANAGSGKTRVLVDRVINLLLAGHKPETILC 61
Query: 77 STFTVKAAGELKERLEKKITE-----------QLRLTNDTALK--------QFLSEQLLG 117
T+T AA E+KERL K++ + +L+ D LK + ++ L
Sbjct: 62 VTYTKAAAAEMKERLFKRLGDWSVTPDEVLAVELKALLDRDLKPGDANRARKLFAQALET 121
Query: 118 LQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQA 177
I T+ AF + L+ ++ G P F L D S D +G
Sbjct: 122 PGGLKIQTIHAFCEGLLRRFPLEAGAPPGFDTLDDIS-----AGKAMDAARRAVLSGLAP 176
Query: 178 ELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNP--------QRWLLENFLKGANT- 228
E L+ G ++ R +DF++ + Q W + +G++
Sbjct: 177 EAVNTLIET-GGPDAINTILRWARSNRHDFAETCERAGGCDGLIAQLWAVLELPEGSHAA 235
Query: 229 ---YKDFSAIPEQEVKDFLNTLQETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQ 285
+A+P EV+ + L A DVT E + A G P A+ +L
Sbjct: 236 ALKQDAMAAMPRTEVEAASHALIHEG-AKTDVTRGETIRVALAAGDPAQAFDAYLA---- 290
Query: 286 LQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKYP-VFRSLHSRLRGLKHLET 344
+ Y + G G A +AT S ++P V L + L L
Sbjct: 291 ---------AFYTKGGTGTRAASLATKTISD--------RFPHVLSLLEAEADRLDALRD 333
Query: 345 IFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLY- 403
+ K D + L+ DF++ Y +A Q A +F D+ A +L +
Sbjct: 334 MIKRADIARASAVALR-IVDDFTRAYSEALEQARALDFDDLIRLAGLLLAPENPFSGWVG 392
Query: 404 --ID-KYHEVMVDEYQDNNHTQERMLELLS-----------NGRNRFMVGDIKQSIYRFR 449
+D + ++DE QD Q M+ L+ GR F+VGD KQSIY F+
Sbjct: 393 YKLDGQLAHALIDEAQDTAPRQWDMIRGLTAEFFAGAGAQETGRTLFVVGDEKQSIYSFQ 452
Query: 450 QADPQIFNQKFKDFQEHPEHGKLIL----LKENFRSQSEVLDATNSVFTHLMDEAVGEIL 505
A+P F ++ +L L +FRS E+L A + F + +
Sbjct: 453 GAEPARFIEEGDRIAASAAAVELPFERPGLDVSFRSAPEILTAVDQAFEAKRPALEMKFV 512
Query: 506 YDDTHQLVA---GSSAQK------------IPYPQNETQVLIYDTKDQQNQDLAVEDDSN 550
T A G A + IP P+ + I+D D + + + D
Sbjct: 513 AGATDLPFARYQGHRAARSHTPGCVEIWPAIPKPEKTEEGSIFDPVDLRARG-SSRDVLA 571
Query: 551 QISLGEVKLVAKEIIRLHNEEKVQF-------EDITLLVSSRTRN--DGILQTFDDYGIP 601
Q GE+ + + E+ QF DI +LV RT + +++ G+P
Sbjct: 572 QTVAGEIADMISRGDAVWEEKGGQFTQRPVRPSDIAILVWRRTGGFFEEVIRQLKLAGVP 631
Query: 602 LVTDGGEQNYLK-SVEVMVMLDTLRSIDNPLNDYALVALLRSPMF--------AFDEDDL 652
+ G ++ L+ V ML R +D AL +LRSP+F DE L
Sbjct: 632 VA--GADRMVLRDQTAVKDMLALGRFAMTSGDDLALAEVLRSPLFDPVDPAKAGIDEQAL 689
Query: 653 ARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNS 712
LA + + L+ + + + + + AL + D +
Sbjct: 690 YDLARSRTDLKRRGTLWNALFTSEDPRFADARSALSALRDQADK--------------SR 735
Query: 713 LYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYA------------LALRADNFEKTGFKG 760
LYD N + P E R A ++A RA E+
Sbjct: 736 LYDFFTGFLNAR--------TPTGETRWARMFARLGEEARDPLQEFLARALQHEREEGGA 787
Query: 761 LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDM 820
L+ FI I E ++ E++ ++ V +MT+H SKGLE + V IL + +
Sbjct: 788 LASFIARI----EGEDVQIKREMSPDRDEVQVMTVHASKGLE-RPVIILPDTTRSPLTGK 842
Query: 821 TSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLL 880
T+P+ G LL + + DT +++ L+E RLL
Sbjct: 843 TTPIFAQTDCG----------------LLWSQRKDDDTDAVAALRQQSENRQLAEHGRLL 886
Query: 881 YVAMTRSEKKLYLVG 895
YVA+TR+ +L + G
Sbjct: 887 YVALTRARDRLIVCG 901
>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 760
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 142/565 (25%), Positives = 230/565 (40%), Gaps = 119/565 (21%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + + NA +F DI +++ EN + Y DK+ ++VDEYQD NH Q ++ LL
Sbjct: 180 YQKKLLANNALDFDDIIMLTVRLFRENPEVLSQYQDKFRYILVDEYQDTNHAQYALVNLL 239
Query: 430 SNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN +VGD QSIY FR AD Q DF+ K + L++N+RS +L A
Sbjct: 240 AKKYRNLCVVGDDDQSIYMFRGADV----QNILDFERDYPEAKTLKLEQNYRSTKSILQA 295
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET-QVLIYDTKDQQNQDLAVED 547
NSV + S +K + +NE Q ++Y D ++
Sbjct: 296 ANSVVQN------------------NRSRKEKSLWTENEDGQPIVYYVADNEHD------ 331
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E + + + I RL N E +F + +L + ++ I + F GIP G
Sbjct: 332 --------EARYMGERIQRLLNVEGRKFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSG 383
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
+ Y + +E+ +L LR + NP + + +L P E L ++ L +Q
Sbjct: 384 LKFY-ERMEIKDILAYLRILHNPADQVSFSRVLNVPKRGLGESTLEKI-LDYANEQEMPV 441
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL-NSLYDLIWKIYNDKFY 726
L ME + + L AF R + +S+ L+ ++ Y
Sbjct: 442 LDAIME------ADYIPELQSRAKKPLLAFAHLMQELRALAAAESSVTKLVEEVLKRTGY 495
Query: 727 YDYVGS--LPKSEQRQANL----------------YALALRADNFEKTGFKGLSRFIRMI 768
+D + S P++E R NL Y A+ + E GL+ F+ +
Sbjct: 496 WDNLVSDKSPEAEARLENLREFLSVTAEYDEKADNYETAVVQEGIEDALVPGLAGFLEQV 555
Query: 769 DKILE-NQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
+ + + D AD +AV +MTIH +KGLEF VF+
Sbjct: 556 SLVAQIDSLDQAD-------DAVVMMTIHSAKGLEFPVVFLGG----------------- 591
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+EE + P+ + +D + L+E+ RL YVA+TR+
Sbjct: 592 ----------------MEEGIFPSSRSMLDPV------------LLAEERRLCYVAITRA 623
Query: 888 EKKLYLVGKGSQEKLG-DQYDGKSE 911
++LYL + G QY+ SE
Sbjct: 624 RERLYLAYAQQRMLYGRTQYNRPSE 648
>gi|118726540|ref|ZP_01575164.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
gi|118664088|gb|EAV70726.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
Length = 419
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 122/425 (28%), Positives = 203/425 (47%), Gaps = 53/425 (12%)
Query: 25 KQKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL---RGVTIDQLFISTFTV 81
+ K T EQ AI N+LV+A+AG+GKT V++ERI+ KI V ID L + TFT
Sbjct: 3 ETKWTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKITDKENPVDIDSLLVVTFTN 62
Query: 82 KAAGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
AA E++ER+ I++ + + + +S QL+ L A I T+ +F +++ ++
Sbjct: 63 AAATEMRERIGAAISDTIEKNQGS---KNISRQLILLNKASITTIHSFCLEVIRSNFQSI 119
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTD-YRTGDQAELFTKLVRNFAGNRKDSSNFRQI 200
I P F+IL D++E LLK++ DLF + Y ++ E F +L+ ++ GNR D + +
Sbjct: 120 EIDPGFKIL-DETEATLLKSETLSDLFEEIYEDAEENEDFFELLESYGGNR-DDLKIQDM 177
Query: 201 IYKIYDFSQATDNPQRWLLE-----NFLKG--------ANTYKDFSAIPEQEVKDFLNTL 247
+ IY F Q+ P++WL + NF G + S + + ++D +N
Sbjct: 178 VMSIYSFVQSYPWPEKWLEQQIESYNFEVGNDFGETTWGRILLETSLMRLEGLRDIMN-- 235
Query: 248 QETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAN 307
E +++ LE Y V + ++ + + + +W D LY + N
Sbjct: 236 -EACAKIKNAQGLEKYLSVFIEDNDN--LEKLIGICKTGMNW----DQLYNYVNSFEFRN 288
Query: 308 DIATLIPSGNDV--TVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQ-------SLPLLQV 358
L G D +V + L S + GL+ E F D+ P+L+
Sbjct: 289 ----LPRCGKDAEKSVQESVKKIRDELKSVINGLRD-EVFFMESDEIASDLKTMYPILKC 343
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEEND--------AIRQLYIDKYHEV 410
+ +DF ++Y K Q + +F+D+ HF + IL E D I Q Y DK+ E+
Sbjct: 344 VSRLVMDFGRRYAHKKSQRASVDFNDLEHFCLNILAETDKDGNIRPTKIAQNYKDKFTEI 403
Query: 411 MVDEY 415
+VDEY
Sbjct: 404 LVDEY 408
>gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
Length = 733
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 132/528 (25%), Positives = 221/528 (41%), Gaps = 98/528 (18%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y Q Q NA +F D+ A+++LE N+ +R+ Y DK+ +++DEYQD N Q + LL
Sbjct: 176 YQQKLQQNNAVDFDDLLLLAVRLLERNEEVRRRYQDKFQYILIDEYQDTNRAQYLLARLL 235
Query: 430 -SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN +VGD QSIY +R AD + DF+ K+I L++N+RS +L A
Sbjct: 236 AAKHRNICVVGDADQSIYAWRGADI----RNILDFEADYPDAKVIKLEQNYRSTQTILAA 291
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N+V + + ++ S + I T L +D +D
Sbjct: 292 ANAVIENNTGRKPKALWTEN-------SRGEPI------THYLAFDERD----------- 327
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
E + +A + +LH + + + +L + ++ I + GIP GG
Sbjct: 328 -------EARFIADTVTKLHTVYRASYGSMAVLYRTNAQSRVIEEALMRNGIPYTIVGGV 380
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ +L LR I NP + +L+ ++ P + +ARL + Q+ +L
Sbjct: 381 KFYDRK-EIKDILAYLRVILNPADAVSLLRIINVPRRGVGDATIARLT--DYAAQNGISL 437
Query: 669 YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYD 728
++ + N V +T L+ E + + DLI ++ D Y
Sbjct: 438 FDVVSNP-----DMVPGLTARAKRPLENLAELIFNLIAVKDQLPVADLIERVMQDSGYLA 492
Query: 729 YV--GSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVA-L 785
+ P+++ R NL L A F T + ++ L + ++D++ A L
Sbjct: 493 ELEKEQTPQADGRIENLRELLSVAKEFATTAAED------TLENFLAHVALVSDIDTAEL 546
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
VTLMT+H +KGLEF YVF+ +E
Sbjct: 547 ADERVTLMTLHSAKGLEFPYVFLAG---------------------------------ME 573
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
E + P + MD + + RL YV +TR+E+KLYL
Sbjct: 574 EGIFPHSRTLMDEEEIEEER------------RLCYVGITRAERKLYL 609
>gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
Length = 672
Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats.
Identities = 132/530 (24%), Positives = 235/530 (44%), Gaps = 92/530 (17%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGR-NRF 436
NA +F DI ++++L+ AI + + ++ +MVDEYQD N +Q ++ LL+ N
Sbjct: 180 NAIDFDDIIMLSVKLLQSTPAILEHWQKRFSHIMVDEYQDTNASQYLLISLLAKLHGNLC 239
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
+VGD QSIY +R A+ + +F+ ++I L++N+RS S +LDA NSV +
Sbjct: 240 VVGDDDQSIYGWRGAEVR----NILNFEHDHAGCRVIKLEQNYRSTSSILDAANSVIKN- 294
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
L D A ++I DL V E
Sbjct: 295 ------NQLRTDKALWTALGKGREI--------------------DLIVAGSEED----E 324
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
V + ++ +K+ + D+ +L S +++ + IP V GG+Q Y + E
Sbjct: 325 AAKVVESMLMEQFRDKLSWSDLAILYRSNSQSRAFEEKLRQERIPYVVIGGQQFYERK-E 383
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V + L+ IDNP ++ +L+ ++ P ++ L RL +L +H L++ + R
Sbjct: 384 VKDAIAYLKVIDNPSDEASLLRIINFPRRGIGDNTLVRLNQWSL--EHDLPLFQTLARVR 441
Query: 677 N--GQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLP 734
+ + + EA A + E F + R +N+L++ ++ + Y +
Sbjct: 442 DIPDISESSKKAVEAFHAMMRGVMEGFKNIRMGEQVNALFN---RLRIEDELYRTLNDAS 498
Query: 735 KSEQRQANLYALALRADNFEKTGFKG-LSRFIRMIDKILENQNDLADVEVALPKNAVTLM 793
++ +R N+ + +E+ KG LS F+ I + E++ + D E ++AVTLM
Sbjct: 499 QARKRIENIEQVVNSLAVYEEQNPKGTLSAFLERISLLDEDKPNEDDKEHG--RDAVTLM 556
Query: 794 TIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVK 853
++H SKGLEF +VF++ +EE LLP K
Sbjct: 557 SLHSSKGLEFSHVFLVG---------------------------------MEEDLLPH-K 582
Query: 854 VSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLG 903
S++ P T++E+ RL YV +TR+ + L + ++ K G
Sbjct: 583 RSIEEDP-----------TVAEERRLCYVGITRARRHLTISRCRTRRKYG 621
>gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
Length = 678
Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats.
Identities = 125/537 (23%), Positives = 234/537 (43%), Gaps = 86/537 (16%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y +A NA +F D+ +++L++ A+ + Y ++ +MVDEYQD N Q R+L L
Sbjct: 174 RYQRALKAFNAVDFDDLIMLTVRLLQDKPAVLEKYRQRFRYLMVDEYQDTNAAQYRLLRL 233
Query: 429 LSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
L+ G RN +VGD QSIY +R AD DF++ +I L++N+RS +L
Sbjct: 234 LAEGHRNLCVVGDDDQSIYGWRGADL----GNILDFEKDFPGTMVIRLEQNYRSTGNILT 289
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A N+V + + + + A KI Y L ED
Sbjct: 290 AANAVIRNNLKRKIKAL-------WTADGPGDKIDY-------------------LLCED 323
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
D + E ++V + I+ + ++ + D +L + ++ + +P V GG
Sbjct: 324 DED-----EARVVVERIMAERFKARLSYRDFAILFRTNVQSRAFEEQLRYQDVPYVLIGG 378
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
+Q + EV +L R + NP ++ L+ +L +P + RL +H
Sbjct: 379 QQ-FFDRKEVKDVLAYFRVLLNPRDEVNLLRILNTPKRGIGDTSADRLI--RFSAEHDIP 435
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYY 727
L++ ++N +G +++ E+++ +D +R L ++ +L+ ++ +
Sbjct: 436 LWQVLKNPAEVEGLGDKVM-ESIATFVDLMQNFRRRFRVGQLSDTGRELLQELRFEDDLL 494
Query: 728 DYVGSLPKSEQRQANLYALALRADNFEKTGFK-GLSRFIRMIDKILENQNDLADVEVALP 786
K+ +R AN+ + ++E+ + L F+ + + ++ D + L
Sbjct: 495 RTAQDPDKARRRMANVAEVINAMASYEQREVQPTLEGFLDKVSLLDRDEPPRQDKDAKLQ 554
Query: 787 KNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEE 846
++AV LM++H SKGLEF VF++ +E+
Sbjct: 555 RDAVVLMSLHSSKGLEFPCVFLVG---------------------------------MED 581
Query: 847 KLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLG 903
+LLP K + + + E+ RL YV +TR++KKL L+G ++K G
Sbjct: 582 ELLPH------------KKSKGANSNIEEERRLCYVGITRAQKKLTLLGAARRKKFG 626
>gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84621878|ref|YP_449250.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58424459|gb|AAW73496.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84365818|dbj|BAE66976.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 658
Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats.
Identities = 140/544 (25%), Positives = 231/544 (42%), Gaps = 112/544 (20%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS 430
QA++ NA +F D+ +QILE N+ I + ++ ++VDE QD N Q R+L++L+
Sbjct: 170 QARLTTFNAVDFDDLIRLPVQILEANEDIVMGWRERIGYLLVDECQDTNDAQYRLLKMLA 229
Query: 431 NGRNRFM-VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
R F VGD QSIY +R A+P+ Q +D+ K+I L++N+R + VL A
Sbjct: 230 GPRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPAL----KIIKLEQNYRCSNRVLRAA 285
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS 549
N++ H E + + D + ++ +++ +D ++
Sbjct: 286 NALIAHNPHEHLKTLWSDQA----------------DGERIRVWECRDSEH--------- 320
Query: 550 NQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQ 609
E + VA EI L ++V + D +L ++ + + +P GG
Sbjct: 321 ------EAEKVAAEISFLGTAKQVPWSDFCILFRGNFQSRPLEKALQLLRVPYHLTGGTA 374
Query: 610 NYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA----LQNLPDQHK 665
+L+ EV +L LR I NP +D A + ++SP LARLA +++P
Sbjct: 375 -FLERQEVKDLLSWLRLIVNPDDDVAFLRAVQSPKREVGATSLARLAELASAKSVP---- 429
Query: 666 QNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
M A G L A + L AF + RE S +L+ +
Sbjct: 430 ------MSRAAESMGALQHLPPRAANG-LSAFTDIVRDMREHSASMPAGELVRTLAEKSG 482
Query: 726 YYDYVGSLPKSE----QRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
+ + + K E +R+ NL L A+ FE G +G S L ++ND D
Sbjct: 483 LLNDLRNQSKDETGFQRRKRNLDEL---AEWFEG-GPRGASASDLAAQLALLSRNDKDD- 537
Query: 782 EVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMK 841
N V +MT+H SKGLEF+YVFI+ ++GV
Sbjct: 538 ----GGNQVRMMTMHASKGLEFRYVFIVGC-----------------EDGV--------- 567
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEK 901
LP++++ E L E+ RLLYV +TR++++L++ K
Sbjct: 568 -----------------LPHEVSLEE---GNLQEERRLLYVGITRAKEQLWMSHSKLTRK 607
Query: 902 LGDQ 905
G+
Sbjct: 608 FGEH 611
>gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z]
gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z]
Length = 1057
Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats.
Identities = 208/928 (22%), Positives = 372/928 (40%), Gaps = 139/928 (14%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKI-LRGVTI----DQLFISTFTVKA 83
T Q A++ ++ V+A AG+GKTF++ +R + + R T+ + T+T KA
Sbjct: 6 TEAQRRALFME-ESVCVTAGAGTGKTFLLTKRYIAALTYRRETMHTGASDILALTYTDKA 64
Query: 84 AGELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGI 143
A E++ ++ +++ + D L+ I T F L+ ++ Y G+
Sbjct: 65 AAEMRTKIGRELKKAAE--EDPELEGVWES----FSRCSISTFHGFCLSLLKEFAYEAGL 118
Query: 144 SPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDS-SNFRQIIY 202
F ++ + +L+ + + L A LF +V F R+ + + + Q +
Sbjct: 119 DAGFSVMDELDTHELVTGTIREML-----EHPPATLFGDVVTLFDHLREATIAGYLQSLM 173
Query: 203 KIYDFSQATDNPQRW--LLENFLKGANTYKDFSAIPEQEVKDFLNTLQETALALRDVTDL 260
+I + + W LLE K+ SA+ + + E A RD DL
Sbjct: 174 RI-------EGAKDWFSLLE---------KNPSAV----IAVWQKAWDEEITAYRD--DL 211
Query: 261 EDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVT 320
+ V A A K E Q F + AN A + +G
Sbjct: 212 AGDELVNALMAELRALAPERKG-ELFQAGPAAFAAFCD-------ANGPAEMYAAGK--L 261
Query: 321 VAGVKYPVFRSLHSR--LRGLKHLETIFK----YQDQSLP-------LLQVLQSFTLDFS 367
+AG+ +++ + L K +FK + D+S P +L L S
Sbjct: 262 LAGINTNAYKAPLPKGGLERFKEKREVFKEFPTHPDESDPRTRLTFEILAALGRVASAVS 321
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
++ ++ K Q +F D+ + L ENDA+++ +Y ++VDE QDN+ ++
Sbjct: 322 ERTVREKQQRGVLDFDDLIQ-KTRDLIENDAVQKTLNARYRYILVDEVQDNDPVLTDIIR 380
Query: 428 LLSNG---RNR-FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+L NR F+VGD KQSIY FR AD FN F P + L +FR+
Sbjct: 381 ILCGDPKENNRLFIVGDAKQSIYLFRGADVSGFNAFQTVFANDP-----VELDTSFRTVP 435
Query: 484 EVLDATNSVFTHLMDEA--VGEILYDD--THQLVAGSSAQKIPYPQNETQVLIYDTKDQQ 539
E++ N VF+ + + + E Y + H+ S I P ET+
Sbjct: 436 EIIRLVNHVFSSVFADPKEIWEAGYGELTPHRAGHSGSVTLIRLPTGETKA--------- 486
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEE----KVQFEDITLLVSSRTRNDGILQTF 595
++ ++ ++ V+++ + +++++ +F DI +L+ +RT D +
Sbjct: 487 ---ESMRREARTLASWIFDTVSRKKLSVYDKDGTCRPARFGDIAVLIEARTHMDKLRHAL 543
Query: 596 DDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL 655
+ YG+P + G Y K EV + L++I P D L +L+SP F + +L R
Sbjct: 544 ESYGVPYTEEKGYSFYQKQ-EVFDFTNLLKAIVYPEEDIPLYGVLKSPYFGISDAELCRA 602
Query: 656 ALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYD 715
A + + L ++ N T +K+ W
Sbjct: 603 AAGS-----GRPLIWRLRN----------YATANPDSKIGKAVGDLARWHAEIGTEPFVP 647
Query: 716 LIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQ 775
+ ++ + G LP + ANL L A + + ++ ++D +E +
Sbjct: 648 FLSRLIAESGIAAVYGGLPFGREATANLEKLVAIARSRSMNRPFSVYEYLGILDTCMEEE 707
Query: 776 NDLADVEVALPK---NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
D + E +P + V ++T+H SKGLE+ + L +++P + + GV
Sbjct: 708 FD--EREGMVPSEEDDRVKILTVHASKGLEYP-ILALCFAGTGDGLKVSAP-VFDAELGV 763
Query: 833 GIKY-IADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKL 891
GI +A E L + + K E++ L+E+ RL YVAMTR+ L
Sbjct: 764 GIPVRLAGEGEGL-------------SFVIECLKPEMKAKLLAERKRLFYVAMTRARDHL 810
Query: 892 YLVGKGSQEKLGDQYDGKSENNHLPVAD 919
+ G D G N+ L + D
Sbjct: 811 VISGT-------DGKKGPETNSFLSMYD 831
>gi|42520239|ref|NP_966154.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 1089
Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats.
Identities = 220/936 (23%), Positives = 399/936 (42%), Gaps = 173/936 (18%)
Query: 42 NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKIT----- 96
++ V+ASAG+GKT ++I+R++ +L + TFT AA E++ R+ ++
Sbjct: 27 SVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSILSKWAIC 84
Query: 97 ---------EQL--------------RLTND--TALKQFLSE-QLLGLQTADIGTMDAFT 130
EQL R D T ++ SE + LGL I T+ AF
Sbjct: 85 SDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLFSELENLGLT---IQTIHAFC 141
Query: 131 QKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGN 190
KL++ + GI+PN + SE L + +F+ + + D L +
Sbjct: 142 YKLISSFPIEAGIAPNCTL----SECKELHSIIFNKVLHNETVQDDINLIATEI------ 191
Query: 191 RKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTLQET 250
D + R ++Y + A+ N +++ ++ L + D + + V+ L E
Sbjct: 192 --DENKLRDLLYTLCVKRSASANDSKYI-KDKLSAPDEIHDLQSETIEHVERLAEILSEG 248
Query: 251 ALALRDVTDLEDYKQVTAKGTP---TAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAN 307
+ + +++ Y V G T+ + + +E L L +S + + + +A
Sbjct: 249 SKRDQSYSEIL-YSTVIPAGIQKKRTSVTRWNDTKVENLAKVFLKSES-HEKKSISSIAT 306
Query: 308 DIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFS 367
+ + V+ VF + +R + + IFK L + +V +
Sbjct: 307 KSILEKFKDAEQIIESVQNVVF----THIRDMNSYQ-IFKRTSSLLGVFKV-------YV 354
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEE---NDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
Y K + +++DI + A +L D I K ++VDE QDN+ +Q +
Sbjct: 355 DLYNSEKSKNALLDYNDIINLATNLLSNPNYKDWILFNLDQKIDHILVDEAQDNSISQWK 414
Query: 425 MLELLSN--------GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI--L 474
++ L + R F+VGD+KQSIYRF+ A+P +FN + F I
Sbjct: 415 IITNLCDEFFAGNDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTGGRDWISCQ 474
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVL--- 531
L+++FRS EVL + +F + EI ++D + + +P+ +N+ +
Sbjct: 475 LEKSFRSTPEVLMLVDRIFNNFR----AEISFND-------NEIKHVPHRENDQGYIEIW 523
Query: 532 --IYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEII-RLHN-----------EEKVQFED 577
+ K+++ Q L + + + +L+A+ I R+HN + ++ D
Sbjct: 524 PALPRRKEKEQQALQIPLTCRENYIIADRLLAQTIANRIHNWLNEGRILVAKDRHIEPRD 583
Query: 578 ITLLVSSRTRN---DGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL--- 631
I +LV R RN D I+ +P+V ++Y + ++ + + D + + L
Sbjct: 584 IMILV--RQRNVLVDYIISELKKANVPVVG----RDYFRIMDYIAVQDLIALAEFLLLQA 637
Query: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691
ND AL L+SP+F F EDDL +A D+ + +L+E++++ + +
Sbjct: 638 NDLALANALKSPLFNFTEDDLFNIAY----DRKEHSLWERIQD-----------YSVVIY 682
Query: 692 AKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751
++L+ LS E L +L+ I + KF + NL
Sbjct: 683 SELNYLIN--LSRIESPL--ALFTHILRTGKKKFAARLGLECFEVLDEFMNLVL------ 732
Query: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811
FE + ++I+ EN ++ + ++ +NAV +MTIHKSKGL+ VF+++
Sbjct: 733 QFENPSLQAFVQWIK------ENNPEIKN-DMQSERNAVRIMTIHKSKGLQAPIVFLVDT 785
Query: 812 DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLA 871
+ T P +N I I D E +P + KRE +L
Sbjct: 786 N--------TVP-----RNSESI--IFDGTE------VPFWCGKNNNAYCDQVKREKKLE 824
Query: 872 TLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYD 907
+E +RLLYVA+TR+E +LY++ K +K G YD
Sbjct: 825 DYNEYLRLLYVALTRAEDELYILSKEPVQK-GSWYD 859
>gi|76260507|ref|ZP_00768142.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
gi|76164638|gb|EAO58783.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
Length = 831
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 137/537 (25%), Positives = 229/537 (42%), Gaps = 108/537 (20%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y Q ++ NA +F D+ +++ +E+ AI Y +Y ++VDEYQD N Q ++
Sbjct: 262 RYQQLLIESNALDFDDLLVETVRLFQEHPAILHHYHQRYRFLLVDEYQDTNRAQYLIVRA 321
Query: 429 LSN-GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
L+ RN F+VGD QSIY +R AD + Q D+ + ++ILL++N+RS +LD
Sbjct: 322 LAERDRNLFVVGDEAQSIYAWRGADIRNILQFEHDYPD----ARVILLEQNYRSTQAILD 377
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A ++ A + Y V G V +Y+ D+++
Sbjct: 378 AAQALM-----HASPQRKYAKNLWTVNGKG----------EAVTLYEASDEED------- 415
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
EV+ V EI+RL E K + D ++ + ++ + + G+P GG
Sbjct: 416 --------EVQFVVDEILRLIAEGKARPGDCAIMYRTNAQSRLVEEALIHAGVPYYVVGG 467
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA----LQNLPDQ 663
+ Y + E+ +L LR I NP + +L ++ P E +A L LP
Sbjct: 468 VRFYERK-EIKDVLAYLRLIANPYDSVSLQRIINWPGRGIGERTVAELIAWARTLGLP-- 524
Query: 664 HKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYND 723
LY+ + + A +A L F+ + + +L DLI + N
Sbjct: 525 ----LYQALREIADNDAISHPFGGRARTA-LTEFYRLLSELHQLHGMMALSDLIDYLLNR 579
Query: 724 -----KFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778
Y +Y G +++ R N+ L A + + + LE +
Sbjct: 580 IDVRATLYSEYDGD--EADDRWRNVQELRNAALKYVNLPVE------TQLTAFLEEIALV 631
Query: 779 ADVEVALPKNA--VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKY 836
ADV+ A+ +N+ VT +T+H++KGLEF VF+L I
Sbjct: 632 ADVD-AIDRNSDTVTCITLHQAKGLEFPCVFLLGI------------------------- 665
Query: 837 IADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
EE LLP + L+ R+ ++ E+ RLLYV MTR++++LYL
Sbjct: 666 --------EEGLLPHSR--------SLDNRD----SIEEERRLLYVGMTRAQRRLYL 702
>gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
ATCC 35405]
gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
ATCC 35405]
Length = 1139
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 146/591 (24%), Positives = 248/591 (41%), Gaps = 84/591 (14%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
+ K+Y+ K Q FSD++ A+ +L + +R Y +M+DE+QDNN Q
Sbjct: 303 ELQKEYIYEKKQRGLLTFSDVSQLAVDVLINDIDLRNFYKKNADIIMIDEFQDNNSLQRD 362
Query: 425 MLELLSNGRNR----------------FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPE 468
+L L++ R F VGD KQSIY FR AD +F + D +
Sbjct: 363 LLFLIAEKFERSEKFVPGPHELCPNKLFFVGDEKQSIYAFRGADVSVFRKLADDISDKER 422
Query: 469 HGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYP---- 524
LL N+R++ +++ N++F+ + V + L + + V A+ +P
Sbjct: 423 LAATRLLI-NYRTEPTLINLFNTIFSKVFYSEVNKPL--EKNGFVPAYEAEYVPTETRAP 479
Query: 525 ----QNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVK--LVAKEIIRLHNE-------- 570
+ + +++ +D K A+ED S +S E + +AK I+ L N+
Sbjct: 480 VKGIEPKIEIMFFDKKRFN----ALEDSSRFLSPVEAEAFYLAKRILELRNQGFKIRDGK 535
Query: 571 --EKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSID 628
+ D +L+ + T+ + F ++GIP + ++ + + L+ I
Sbjct: 536 SARACSWSDFAVLLRASTKQSTYERVFRNFGIPYRS-VQQRGLFNDAPINDIYAMLKIIA 594
Query: 629 NPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITE 688
P + +L SP D+D A L L N +L EK+ N + + L
Sbjct: 595 YPSDKKTYAQVLHSPFVNIDDDAFAVLLL-NFTKAFDISLAEKL----NEKNKDAYLRAC 649
Query: 689 ALSAKLDAFFETFLSWREFSLL----NSLYDLIWKIYNDKFY--YDYVGSLPKSEQRQAN 742
L A+L+ T + L Y L+ N + YDY
Sbjct: 650 DLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSNEENHHYMDLYDY------------- 696
Query: 743 LYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVAL--PKNAVTLMTIHKSKG 800
L+ LA +AD T S+F+ ++ +E+ L D+E+ L K++V +T+HKSKG
Sbjct: 697 LFELACQADINGLT----FSQFVDLLSSHIEDNERLDDMELPLDDQKDSVQFLTVHKSKG 752
Query: 801 LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLP 860
LEF V + D + I ++ G+ + Y DM L P + L
Sbjct: 753 LEFPIVI---------VPDCGNRGIPEKKEGL-VFYNEDMGPVLYSPKAPGLPAKAGNLI 802
Query: 861 YQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSE 911
++ + E ++E RLLYVA TR+E L + G + + D D K +
Sbjct: 803 FESLRDEANAKLVAETKRLLYVAATRAESYLIISGVYNHLQNEDSKDSKKD 853
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 42 NILVSASAGSGKTFVMIERIMDKIL-RGVTIDQLFISTFTVKAAGELKERLEKKITEQLR 100
N +++A AGSGKT V+ R + ++ +GV+++++ TFT KAA E+ +R+ ++ +
Sbjct: 25 NSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEKAAAEMHKRIYNELKKIDH 84
Query: 101 LTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLK 160
A+++F A I T+D+F ++ LGISP+F I D +E + L
Sbjct: 85 PNAKNAIEKF--------HLAKISTIDSFCNRIARDACRNLGISPDFNI--DNTESEKLA 134
Query: 161 NDVFDDLFTDYRTGDQAELF 180
+ D F R+ + F
Sbjct: 135 YRIGLDFFLKMRSDKTMQFF 154
>gi|145620384|ref|ZP_01776416.1| UvrD/REP helicase [Geobacter bemidjiensis Bem]
gi|144943281|gb|EDJ78374.1| UvrD/REP helicase [Geobacter bemidjiensis Bem]
Length = 732
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 133/523 (25%), Positives = 225/523 (43%), Gaps = 102/523 (19%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGR-NRF 436
NA +F D+ A+Q+LE+ +R Y+ +Y +MVDEYQD N Q R+++LL+ R N
Sbjct: 180 NAVDFGDLLLLAVQLLEQVKEVRDKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGERKNLC 239
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
+VGD QSIY +R AD + + KDF K++ L++N+RS +LD +V
Sbjct: 240 VVGDDDQSIYGWRGADIRNILEFEKDF----PGVKVVKLEQNYRSTKTILDGAWNVV--- 292
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
Q G +++ + + ++Y T + + E
Sbjct: 293 --------------QKNRGRKPKRLWTDNPDGERIVYRTLPNEWE--------------E 324
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ V +E R +E ++ + + ++ + G+ GG + Y + +E
Sbjct: 325 ARTVCRETERFLDEGG-DLSEVAVFYRTNAQSRAVEDAMVSAGVAYHMVGGVRFYAR-LE 382
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V +L L+ +DNP +D AL ++ +P + RL+ + LY+ M
Sbjct: 383 VKDILAYLKVLDNPSDDVALKRIINTPPRGIGNTTVQRLS--EFAAEKGIPLYDAMLEGA 440
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKS 736
G L++ A K+ AF + ++E + L +L I + Y+ + +L
Sbjct: 441 FG-----PLLSVAAKGKVAAFAQEIDGYKEKAEQMPLSELTSTIIYESGYFARLKALGSD 495
Query: 737 E--QRQANLYALALRADNFEK-TGFKGLSRFIRMIDKI--LENQNDLADVEVALPKNAVT 791
E +R NL L +E G KGL+ F+ + + LE + D K++ T
Sbjct: 496 EAQERIENLQELVTAMQAYESGPGEKGLADFLEQVALVSDLEQEGDGK-------KSSAT 548
Query: 792 LMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPT 851
LMT+H +KGLEF VFI+ +EE+L P
Sbjct: 549 LMTLHSAKGLEFPLVFIIG---------------------------------MEERLFPH 575
Query: 852 VKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
V+ D A + E+ RL YV MTR++K+L+L+
Sbjct: 576 VRALEDP------------AQMEEERRLCYVGMTRAKKRLFLL 606
>gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 658
Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats.
Identities = 139/544 (25%), Positives = 232/544 (42%), Gaps = 112/544 (20%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS 430
QA++ NA +F D+ +QILE N+ I + ++ ++VDE QD N Q R+L++L+
Sbjct: 170 QARLTTFNAVDFDDLIRLPVQILEANEEIVMGWRERIGYLLVDECQDTNDAQYRLLKMLA 229
Query: 431 NGRNRFM-VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
R F VGD QSIY +R A+P+ Q +D+ ++I L++N+R + VL A
Sbjct: 230 GPRGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPAL----EIIKLEQNYRCSNRVLRAA 285
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS 549
N++ H E + + D + ++ +++ +D ++
Sbjct: 286 NALIAHNPHEHLKTLWSDQA----------------DGERIRVWECRDSEH--------- 320
Query: 550 NQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQ 609
E + VA EI L ++V + D +L ++ + + +P GG
Sbjct: 321 ------EAEKVAAEISFLGTAKQVPWSDFCILFRGNFQSRPLEKALQLLRVPYHLTGGTA 374
Query: 610 NYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA----LQNLPDQHK 665
+L+ EV +L LR I NP +D A + ++SP LARLA +++P
Sbjct: 375 -FLERQEVKDVLSWLRLIVNPEDDAAFLRAVQSPKREVGATSLARLAELASAKSVP---- 429
Query: 666 QNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
M A G L A + L AF + RE S +L+ + +
Sbjct: 430 ------MSRAAESMGALQHLPPRAANG-LSAFTDILRDMREHSATLPAGELVRTLADKSG 482
Query: 726 YYDYVGSLPKSE----QRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
+ + + K E +R+ NL L A+ FE G +G S L ++ND D
Sbjct: 483 LLNDLRNQSKDEAGFQRRKRNLDEL---AEWFEG-GPRGASASDLAAQLALLSRNDKDD- 537
Query: 782 EVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMK 841
N V +MT+H SKGLEF+YVFI+ ++GV
Sbjct: 538 ----GGNQVRMMTMHASKGLEFRYVFIVGC-----------------EDGV--------- 567
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEK 901
LP++++ E L E+ RLLYV +TR++++L++ K
Sbjct: 568 -----------------LPHEVSLEE---GNLQEERRLLYVGITRAKQQLWMSYSKLTRK 607
Query: 902 LGDQ 905
G+
Sbjct: 608 FGEH 611
>gi|145622438|ref|ZP_01778397.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
gi|144947162|gb|EDJ82195.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
Length = 1065
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 145/577 (25%), Positives = 253/577 (43%), Gaps = 74/577 (12%)
Query: 355 LLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDE 414
L +++ +L S+ YL + ++F + ++ E N + + Y +K+ ++VDE
Sbjct: 246 FLWLVKIISLIASEFYLGLTIDNFLYDFKAVLEKVVEEFENNPDLLKKYQNKFKYIIVDE 305
Query: 415 YQDNNHTQERMLELLSNGRNRFM-VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI 473
+QD N+ Q+ + + L N F VGD KQSIYRFR AD +F++ + + E L
Sbjct: 306 FQDTNYLQKEIFDKLHTTDNYFFYVGDRKQSIYRFRGADVSVFSRSLTEAENSDEEVLLG 365
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQ-------KIPYPQN 526
L +N RS ++++ N + + + + D +L+ S Q +IP +
Sbjct: 366 KLTKNRRSHQQIINFANHLSETSLFKRDNLQMPDIDPKLLENLSFQEEDISEPEIPPQET 425
Query: 527 ET-------------QVLIYDTKD----QQNQDLAVEDDSNQISLGEV--KLVAKEI--- 564
ET +LI T++ Q LA+E D +L +V KL+ +E+
Sbjct: 426 ETIPTLSEDDTKRVKYILIEPTEENGLNNQENRLAIEID----TLAKVIKKLLGQEMDFK 481
Query: 565 IRLHNE-----EKVQFEDITLLVSSRTRNDGILQ-TFDDYGIPLVTDGGEQNYLKSVEVM 618
+R +N+ K++ +DI +L + IL+ TF Y IP G + Y + E+
Sbjct: 482 VRKNNKVYYERRKIEPKDIAVLSKELKNTEKILRNTFFKYNIPFYIFGSKSFYNRP-EIQ 540
Query: 619 VMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNG 678
+ L SI NP NDY V + S + DL++L ++ + + +E EN +N
Sbjct: 541 AIFAALNSIQNPFNDYQFVRYMMSLLVGMSFQDLSKLV-----EKSQGSFFETFENIKNE 595
Query: 679 QGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQ 738
+ V E+ ++ +++ + ++ I ND Y+ + E
Sbjct: 596 FPEDV---VES--------YKVLKKYKDLKYYLTPSSILKGIINDNNYFSKLALTNDPEV 644
Query: 739 RQANLYALALRADNFEK--TGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIH 796
+N+ L +A+ + F L RF++ I E + + D N+V +MTIH
Sbjct: 645 SISNIKKLINQAEEYNNMANSFSELVRFLKNASNISEEEASIEDET----SNSVKVMTIH 700
Query: 797 KSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSM 856
KSKGLEF V ++ + S S S N G +Y L K S+
Sbjct: 701 KSKGLEFPIVLMIGLHNSISNTKNGSNAEFSIPNAEGNRYYI---------LNNIYKESV 751
Query: 857 DTLPYQLNK--RELRLATLSEQMRLLYVAMTRSEKKL 891
+ + L K + +E RL+YV +TR++ L
Sbjct: 752 ENSDHWLLKWFKNNEFLDKTEANRLVYVGITRAKDLL 788
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 42 NILVSASAGSGKTFVMIE---RIMDKILRGVTI-DQLFISTFTVKAAGELKERLEKKITE 97
N +SASAG+GKT+++ + ++++K I D + TFT KAA E+K R+ ++++
Sbjct: 18 NFFISASAGTGKTYILTQYFIKVLEKNFPNADIVDNILTVTFTNKAASEMKNRIMEEVSN 77
Query: 98 QLRL-----TNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQD 152
+L + Q+ +E + L + I T+D+F +++ + ++G+ PNF I+ D
Sbjct: 78 KLDKKPPYGASKLEWYQYWNEVKINLSRSWIKTIDSFCSRIIRENNISVGVDPNFSIISD 137
Query: 153 KSEQDLLKNDVFDDL 167
++ V+ L
Sbjct: 138 FQRDREVERSVYSAL 152
>gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 658
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 139/544 (25%), Positives = 232/544 (42%), Gaps = 112/544 (20%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS 430
QA++ NA +F D+ +QILE N+ I + ++ ++VDE QD N Q R+L++L+
Sbjct: 170 QARLTTFNAVDFDDLIRLPVQILEANEDIVMGWRERIGYLLVDECQDTNDAQYRLLKMLA 229
Query: 431 NGRNRFM-VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
R F VGD QSIY +R A+P+ Q +D+ ++I L++N+R + VL A
Sbjct: 230 GPRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPAL----EIIKLEQNYRCSNRVLRAA 285
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS 549
N++ H E + + D + ++ +++ +D ++
Sbjct: 286 NALIAHNPHEHLKTLWSDQA----------------DGERIRVWECRDSEH--------- 320
Query: 550 NQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQ 609
E + VA EI L ++V + D +L ++ + + +P GG
Sbjct: 321 ------EAEKVAAEISFLGTAKQVPWSDFCILFRGNFQSRPLEKALQLLRVPYHLTGGTA 374
Query: 610 NYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA----LQNLPDQHK 665
+L+ EV +L LR I NP +D A + ++SP LARLA +++P
Sbjct: 375 -FLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVP---- 429
Query: 666 QNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
M A G L A + L AF + RE S +L+ + +
Sbjct: 430 ------MSRAAESMGALQHLPPRAANG-LSAFTDILRDMREHSSSMPAGELVRLLADKSG 482
Query: 726 YYDYVGSLPKSE----QRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
+ + + K E +R+ NL L A+ FE G +G S L ++ND D
Sbjct: 483 LLNDLRNQSKDETGFQRRKRNLDEL---AEWFEG-GPRGASASDLAAQLALLSRNDKDD- 537
Query: 782 EVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMK 841
N V +MT+H SKGLEF+YVFI+ ++GV
Sbjct: 538 ----GGNQVRMMTMHASKGLEFRYVFIVGC-----------------EDGV--------- 567
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEK 901
LP++++ E L E+ RLLYV +TR++++L++ K
Sbjct: 568 -----------------LPHEVSLEE---GNLQEERRLLYVGITRAKEQLWMSHSKLTRK 607
Query: 902 LGDQ 905
G+
Sbjct: 608 FGEH 611
>gi|118746447|ref|ZP_01594387.1| UvrD/REP helicase [Geobacter lovleyi SZ]
gi|118680653|gb|EAV87111.1| UvrD/REP helicase [Geobacter lovleyi SZ]
Length = 665
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 131/540 (24%), Positives = 232/540 (42%), Gaps = 99/540 (18%)
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDN 418
L+ T +Y NA +F DI +++LEE +RQ + D++ +MVDEYQD
Sbjct: 161 LEQVTAAVYPRYQHLLRAYNAIDFDDIIMLTVRMLEELPEVRQHWQDRFRYIMVDEYQDT 220
Query: 419 NHTQERMLELLSNGR-NRFMVGDIKQSIYRFRQAD-PQIFNQKFKDFQEHPEHGKLILLK 476
N Q +++ LL+ G N +VGD Q+IY +R AD I N F K++ L+
Sbjct: 221 NAGQYKLISLLAQGHGNLCVVGDDDQAIYGWRGADIANILN-----FSAERSSCKVVKLE 275
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK 536
+N+RS +L+A N+V + + D A + + I +L+ DT
Sbjct: 276 QNYRSTGTILNAANTVIRNNSKRS-------DKALWTASGTGELI-------SLLVADTD 321
Query: 537 DQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFD 596
D+ E + V +++ +K + D +L S ++ +
Sbjct: 322 DE-----------------EARQVVEQLQLAQYRDKRPWRDFAILYRSNAQSRAFEEALR 364
Query: 597 DYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA 656
+P V GG Q + + EV L L + NP ++ ALV + P L RL
Sbjct: 365 MEEVPYVLVGG-QKFFERKEVKDSLSYLAVLANPRDEAALVRTINFPRRGIGGTSLLRLQ 423
Query: 657 LQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFF----ETFLSWREFSLLNS 712
+L +H +LY+ + G Q++ ++EA ++ F + + ++ +
Sbjct: 424 QWSL--EHNLSLYDTL-----GMADQIEGLSEATRKAVNGFHTMIRQELADFTSNNMASQ 476
Query: 713 LYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNF-EKTGFKGLSRFIRMIDKI 771
L ++ ++ Y + + ++ +R N+ + F E+ GL+ F+ I +
Sbjct: 477 ATALFKRLGINQELYRTIDNPLQARKRIENIEQVINALAGFEERNPTAGLADFLERIALL 536
Query: 772 LENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNG 831
+N+ + + + P++AVTLM++H SKGLEF VF++
Sbjct: 537 EDNRRETDNDQ---PQDAVTLMSLHASKGLEFPQVFLVG--------------------- 572
Query: 832 VGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKL 891
LEE LLP + S+D P ++E+ RL YV +TR+ ++L
Sbjct: 573 ------------LEEGLLPHHR-SIDEDP-----------EVAEERRLCYVGITRARERL 608
>gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
Length = 729
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 130/528 (24%), Positives = 220/528 (41%), Gaps = 102/528 (19%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS 430
Q K++E NA +F D+ + + ++N + + Y ++ ++VDEYQD NH Q ++ LL+
Sbjct: 179 QEKLRELNAMDFDDLIMQTVFLWQQNPLVLRYYQQRWQHILVDEYQDTNHAQYILVRLLA 238
Query: 431 -NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
G N +VGD Q IY +R AD I N F+E ++ILL+EN+RS +L A
Sbjct: 239 GKGDNLCVVGDPDQGIYGWRGAD--IGN--ILAFEEDFPRARVILLEENYRSTRPILQAA 294
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVL-IYDTKDQQNQDLAVEDD 548
N+V H G +++ + E ++L +Y D+++
Sbjct: 295 NAVIQH-----------------NEGRREKRLWTRRREGELLHLYRATDERD-------- 329
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
E + +A E+ R H +E F D +L + ++ + + F G+P GG
Sbjct: 330 -------EGRFIAGEVYRRHQQEGRPFSDFAVLYRTHAQSRALEEAFIQAGVPYEIVGGL 382
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ +L LR I NP + +L+ ++ P E LAR L+ ++L
Sbjct: 383 KFYQRK-EIKDILAYLRVIANPDDSLSLLRIINVPRRGIGEATLAR--LEAAATSEGESL 439
Query: 669 YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYD 728
Y +E G I L E + R+ ++ DL+ I + Y
Sbjct: 440 YRVLERVDTIPG-----IPARGRQALRELVEMLDNLRQQQEKITVTDLVATILQETGYQA 494
Query: 729 YVGS--LPKSEQRQANLYALALRADNFEKTGFK-GLSRFIRMIDKILENQNDLADVEVAL 785
+ + P+++ R NL ++++ + L F+ + + E+ +
Sbjct: 495 ELEAERTPEAQARLENLKEFQTVTRSYDQGAPESSLGDFLTQVALVAESDTYSGNA---- 550
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
AV LMT+H +KGLEF VF+ LE
Sbjct: 551 ---AVALMTMHTAKGLEFPVVFLAG---------------------------------LE 574
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
E + P + D A + E+ RL YV MTR+ + LYL
Sbjct: 575 EGVFPHFRSLDDP------------AEMEEERRLCYVGMTRAREVLYL 610
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 30 PEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKE 89
P+Q EA+ GT +LV A AGSGKT V+ R+ I GV + + TFT KAA E+KE
Sbjct: 14 PQQ-EAVKHRGTPLLVLAGAGSGKTRVLTYRVAALIQEGVRPENILAVTFTNKAAQEMKE 72
Query: 90 RLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRI 149
RLE + E R GL + T + +++ + + LG PNF I
Sbjct: 73 RLEGLVGEAAR----------------GLW---VSTFHSACVRILRREAHLLGYRPNFVI 113
Query: 150 LQDKSEQDLLK 160
+Q LK
Sbjct: 114 YDTDDQQAALK 124
>gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 658
Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats.
Identities = 139/544 (25%), Positives = 232/544 (42%), Gaps = 112/544 (20%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS 430
QA++ NA +F D+ +QILE N+ I + ++ ++VDE QD N Q R+L++L+
Sbjct: 170 QARLTTFNAVDFDDLIRLPVQILEANEDIVMGWRERIGYLLVDECQDTNDAQYRLLKMLA 229
Query: 431 NGRNRFM-VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
R F VGD QSIY +R A+P+ Q +D+ ++I L++N+R + VL A
Sbjct: 230 GPRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPAL----EIIKLEQNYRCSNRVLRAA 285
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS 549
N++ H E + + D + ++ +++ +D ++
Sbjct: 286 NALIAHNPHEHLKTLWSDQA----------------DGERIRVWECRDSEH--------- 320
Query: 550 NQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQ 609
E + VA EI L ++V + D +L ++ + + +P GG
Sbjct: 321 ------EAEKVAAEISFLGTAKQVPWSDFCILFRGNFQSRPLEKALQLLRVPYHLTGGTA 374
Query: 610 NYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLA----LQNLPDQHK 665
+L+ EV +L LR I NP +D A + ++SP LARLA +++P
Sbjct: 375 -FLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVP---- 429
Query: 666 QNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKF 725
M A G L A + L AF + RE S +L+ + +
Sbjct: 430 ------MSRAAESMGALQHLPPRAANG-LSAFTDILRDMREHSSSMPAGELVRLLADKSG 482
Query: 726 YYDYVGSLPKSE----QRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADV 781
+ + + K E +R+ NL L A+ FE G +G S L ++ND D
Sbjct: 483 LLNDLRNQSKDETGFQRRKRNLDEL---AEWFEG-GPRGASASDLAAQLALLSRNDKDD- 537
Query: 782 EVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMK 841
N V +MT+H SKGLEF+YVFI+ ++GV
Sbjct: 538 ----GGNQVRMMTMHASKGLEFRYVFIVGC-----------------EDGV--------- 567
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEK 901
LP++++ E L E+ RLLYV +TR++++L++ K
Sbjct: 568 -----------------LPHEVSLEE---GNLQEERRLLYVGITRAKEQLWMSHSKLTRK 607
Query: 902 LGDQ 905
G+
Sbjct: 608 FGEH 611
>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
Z-2901]
Length = 718
Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats.
Identities = 136/529 (25%), Positives = 222/529 (41%), Gaps = 98/529 (18%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + + NA +F D+ ++A+++ E + + Y ++ ++VDEYQD +H Q R++ LL
Sbjct: 176 YQEKLNKNNALDFDDLLYYAVRLFENYPRVLEYYQRRFKYILVDEYQDTSHAQYRLVNLL 235
Query: 430 SNG-RNRFMVGDIKQSIYRFRQAD-PQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
+ RN +VGD QSIY +R AD I N + +++PE K+++LKEN+RS ++LD
Sbjct: 236 AQKHRNLCVVGDPDQSIYSWRGADITNILNFE----RDYPE-AKVVILKENYRSTQKILD 290
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A N+V E+ S ++ +P V Y D+++
Sbjct: 291 AANAVIAKNRMRKEKELF-----------STKESGHP-----VYFYPAVDEKD------- 327
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E VA I L + F DI LL + + + F GIP V G
Sbjct: 328 --------EAAFVALTIESLVKSGEYNFNDIALLYRTHALSRNFEEAFMQRGIPYVIFGS 379
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
+ Y + E+ ++ LR + NP + AL ++ P E A+ ++ D+
Sbjct: 380 RRFYDRK-EIKDIIAYLRIVANPYDKVALKRIINEPKRGIGEASFAK--VEAYADE--TG 434
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYY 727
L + R+ + + L++ L F E L +RE S+ L +I Y
Sbjct: 435 LPIGLLLLRD---EALALVSGKTRKALKEFGEMLLWFRELKDRVSVTKLTEEILERSGYL 491
Query: 728 DYVGSLPKSEQRQ--ANLYALALRADNFEK-TGFKGLSRFIRMIDKILENQNDLADVEVA 784
+ + E R NL FE+ + K L F+ I + + AD E
Sbjct: 492 PALKAEDTMEARARIENLNEFLTVTQAFERESEDKSLEAFLGTISLLTD-----ADTEEG 546
Query: 785 LPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEEL 844
+N V +MT+H +KGLEF VF++ L
Sbjct: 547 -GENRVRMMTLHAAKGLEFPVVFLVG---------------------------------L 572
Query: 845 EEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
EE + P + P + L E+ RL YV +TR++K+LYL
Sbjct: 573 EEGIFPHSRAIFSIDPQE----------LEEERRLCYVGITRAQKRLYL 611
>gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
Length = 676
Score = 116 bits (291), Expect = 9e-24, Method: Composition-based stats.
Identities = 128/548 (23%), Positives = 230/548 (41%), Gaps = 89/548 (16%)
Query: 360 QSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNN 419
+ T + +Y ++ NA +F DI I++ E + Y ++ +MVDEYQD N
Sbjct: 164 EVLTAEIYPRYQKSLKACNAIDFDDILLLTIRLFERFADVLDRYRQQFRYIMVDEYQDTN 223
Query: 420 HTQERMLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKEN 478
H Q ML LLS+ N +VGD QSIY +R A P DF + ++I L++N
Sbjct: 224 HVQYHMLRLLSSAHHNLCVVGDDDQSIYGWRGAKP----GNILDFGKDFPGARVIKLEQN 279
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538
+RS +L A N++ H D G+ L+ AG + + Y
Sbjct: 280 YRSTGNILAAANALIVHNQDRH-GKKLW------TAGDAGADVVY--------------- 317
Query: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598
DD ++ V+++ +E R + Q+ D +L + ++ +
Sbjct: 318 -----RCCDDGEDEAMAVVEVIHRERFR----HQYQYRDFAILYRTNGQSRAFEEQLRYE 368
Query: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658
IP V GG+Q + EV L L+ + NPL++ L+ +L P E RL
Sbjct: 369 NIPYVLIGGQQ-FFDRKEVKDALAYLKVMANPLDEVNLLRILNYPKRGIGETTAERLIQA 427
Query: 659 NLPDQHKQNLYEKMENAR--NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDL 716
++ + +L++ + ++ G G++ + A ++ + + + L+ + +L
Sbjct: 428 SVVGE--CSLWDVLHHSAGIEGIGEKAGEAIQNFIALMERYQRRYR--QPGQLVTTTQEL 483
Query: 717 IWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNF-EKTGFKGLSRFIRMIDKILENQ 775
++ ++ Y K+ +R NL+ + ++ E+ L F+ + + ++
Sbjct: 484 FRELQLEEELYRQADDPKKARRRVENLHEVVNAVSSYEEREAIATLESFLEKVSLLDRDE 543
Query: 776 NDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIK 835
E L ++AV LM++H SKGLEF VF++
Sbjct: 544 PPRGSKEEKLKQDAVVLMSLHSSKGLEFPCVFLVG------------------------- 578
Query: 836 YIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG 895
+EE LP K +T +SE+ RL YV +TR+ ++L L+G
Sbjct: 579 --------MEEGSLPHNKTIEET------------QDVSEERRLCYVGITRARQQLTLLG 618
Query: 896 KGSQEKLG 903
++K G
Sbjct: 619 AARRKKYG 626
>gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
SRS30216]
gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
SRS30216]
Length = 773
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 133/539 (24%), Positives = 222/539 (41%), Gaps = 106/539 (19%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERML- 426
+ Y Q Q NA +F D+ + +L+ + + Y ++ V+VDEYQD NH Q ++
Sbjct: 211 RTYQQRLRQANAMDFDDLIMSTVHLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVK 270
Query: 427 ELLSNGRNRF------MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
EL+ G +VGD QSIY FR A + +F++ +LL++N+R
Sbjct: 271 ELVGTGEGPVPRGELTVVGDADQSIYAFRGATI----RNIVEFEQDYPDATTVLLEQNYR 326
Query: 481 SQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQN 540
S +L A N V L D+ + L+ AG+ Q + Y
Sbjct: 327 STQNILTAANEVIK-LNDDRRPKNLWT-----AAGAGEQIVGY----------------- 363
Query: 541 QDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGI 600
V DD + E VA+E+ RLH+ ++++D+ + + ++ + + F G+
Sbjct: 364 ----VADDEHD----EAAFVAEEVDRLHDAGALKYKDVAVFYRTNAQSRSLEEVFIRTGL 415
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNL 660
P GG + Y + EV + LR +DNP + L ++ P E A AL L
Sbjct: 416 PYKVVGGTRFYERR-EVKDAVAYLRVLDNPDDTVNLRRVINVPKRGIGER--AEAALVVL 472
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
D+ + +E A G L++ +L+A + F + R + + ++ +
Sbjct: 473 ADRERIGFNAALERADEAIG----LVSRSLNA-IKGFAQLIADLRTLAESGAAPSVVLEA 527
Query: 721 YNDKFYYDYVGSL-----PKSEQRQANLYALALRADNFEKTGFKG-LSRFIRMIDKILEN 774
++ Y+ L P+ E R NL L A+ F + +G LS F+ + + +
Sbjct: 528 VLEQ--TGYLAELRASADPQDESRVENLSELVAVAEEFSEENPEGTLSDFLERVSLVADA 585
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
E VTLMT+H +KGLEF VF+
Sbjct: 586 DQIPVGAE---DDGVVTLMTLHTAKGLEFPVVFLTG------------------------ 618
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
+E+ P + D P Q L+E+ RL YV +TR+ ++LYL
Sbjct: 619 ---------MEDGTFPHTRSLGD--PDQ----------LAEERRLAYVGLTRARERLYL 656
>gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis
KC583]
gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis
KC583]
Length = 1155
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 216/953 (22%), Positives = 383/953 (40%), Gaps = 185/953 (19%)
Query: 41 TNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKIT---- 96
T++ VSA+AGSGKT V+ ER++ +L G ++ T+T AA ++ R+ + ++
Sbjct: 22 TSVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSRIFRTLSSWSE 81
Query: 97 ---EQL-----RLTND-------TALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTL 141
QL RL N T +Q + L I T+ AF + L+ Q+
Sbjct: 82 LDDHQLQTILSRLENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCEALLHQFSLEA 141
Query: 142 GISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQII 201
I+ +F +L D S + LL+ L D D L +L + + F Q++
Sbjct: 142 NIAGHFELLDDISRKKLLQQARCQLLIHD----DAQSLLKQLFKIIS-----EETFNQLL 192
Query: 202 YKIYDFSQATDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNTL--QETALALRDVTD 259
+ +AT + E DFL+ + + LR + +
Sbjct: 193 H------EATQK-----------------------QHEFSDFLSFILYENGEEQLRQLFN 223
Query: 260 LEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIA---TLIPSG 316
L +QR L+ I+Q H Y +G K N IA L+ +
Sbjct: 224 L----------AVDETHQRLLEKIKQTALLSPHAMKYYQTNGNSKAKNIIADFLQLVSTS 273
Query: 317 NDVTVAGVKYPVFRSLHSRLRGLKHL-------------ETIFKYQDQSLPLL---QVLQ 360
++ + + ++ + + R L + I K Q+Q LL Q +Q
Sbjct: 274 DEENIITLVSNIYLTTTGKPRDFSRLFSNKSDEIWPFVQKEIEKKQNQLSTLLEKYQCVQ 333
Query: 361 SFTLDFS---------KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYH--- 408
TL+ + K Y K +F D+ + +L+ A + + H
Sbjct: 334 LVTLNMAVFQLCSLYLKIYADLKKANGLLDFDDLIERTLHLLQRRGASQWVQYKLDHGID 393
Query: 409 EVMVDEYQDNNHTQERMLELL-----------SNGRNRFMVGDIKQSIYRFRQADPQIFN 457
+++DE QD N Q ++++LL +N R F VGD KQSIY F+ A+P+ F
Sbjct: 394 HILLDEAQDTNPAQWQIIQLLAKEFFTGDSQRTNTRTIFAVGDEKQSIYSFQGAEPENFA 453
Query: 458 QKFKDFQEHPEH----GKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLV 513
+ + Q+ +H + I L +FRS ++VL + + VF + ++ +
Sbjct: 454 KNGRMIQKQIQHVNEKFEKIQLHYSFRSTADVLKSVDLVFE-----------TPENYKGL 502
Query: 514 AGSSAQKIPYP---QNETQVLIYDTKDQQNQDLAVEDDS--NQISLGEVKLVAKEIIRLH 568
+ +A+ + P + V+++D +Q L + S + + EV+L K +
Sbjct: 503 SADNAKTVHEPIRVNSPGDVIVWDVISKQTSTLPDDWHSTVDHLDTPEVRLADKIATTIA 562
Query: 569 NEEK-----------VQFEDITLLVSSRTR-NDGILQTFDDYGIPLVTDGGEQNYLKS-V 615
+ + ++ DI +LV R + + + IP+ G ++ L S +
Sbjct: 563 DWLQKGEMLPAKGRLLRASDIMILVRKRDQFVPALSRALKLRNIPVA--GADRLQLTSHI 620
Query: 616 EVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENA 675
V ++ R + +P +D +L +L+SP+FA E+ AL L Q +L++ + NA
Sbjct: 621 SVQDLMALARFVLHPKDDLSLACVLKSPLFALSEE-----ALYQLAAQRTGSLWQSL-NA 674
Query: 676 RNGQGQQVQLITEALSAKLDAFFETFLSWREFS-LLNSLYDLIWKIYNDKFYYDYVGSL- 733
+ I E LS K A + + +S +LN NDK + L
Sbjct: 675 HASSHDYFKEIFENLS-KYRALVDQIPVFEFYSHILN----------NDKGRQKILARLG 723
Query: 734 PKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLM 793
P+S + L A +KTG GL F+ + K N+ ++ E+ V +M
Sbjct: 724 PESNEV---LDAFMDYTLTIQKTGLPGLQAFLETLSK---NEPEIKR-ELDQNHEEVRIM 776
Query: 794 TIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVK 853
T+H +KGLE VF+++ NG ++ +
Sbjct: 777 TVHAAKGLEASVVFLVDSGSAIWNSHYAPHFFKLPLNG-------------KQAFIWRPN 823
Query: 854 VSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQY 906
T P++ L+ + E RLLYV MTR+E +L + G + ++ + +
Sbjct: 824 AEFKTKPFEKALSHLKESAEEEYRRLLYVGMTRAEDRLIICGYSQKREVPNTW 876
>gi|89210597|ref|ZP_01188985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
gi|89159859|gb|EAR79519.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
Length = 715
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 110/462 (23%), Positives = 210/462 (45%), Gaps = 59/462 (12%)
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDN 418
Q T Y + + NA +F D+ I++ +N + + Y +++ ++VDEYQD
Sbjct: 169 FQDITARIYPLYQERLKESNALDFDDLIMKTIEVFVDNPMVLEYYQERFKYILVDEYQDV 228
Query: 419 NHTQERMLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKE 477
N Q ++++LL+N RN +VGD Q IY FR AD + +F+E ++I L++
Sbjct: 229 NFAQYKLVQLLANKYRNLCVVGDPDQGIYGFRGADI----RNILNFEEDYPEARVIKLEQ 284
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
N+RS+ ++L A H ++ ++A+K E ++ K
Sbjct: 285 NYRSKEKILKA--------------------AHHVIRNNTARK------EKRLWTKRGKG 318
Query: 538 QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDD 597
+ + DD + E V ++I L E+ +F D +L + +++ + +
Sbjct: 319 EDLKLYVAFDDKD-----EASYVCRKIKELKREKNYKFSDFAVLYRTNSQSRSVEEMMVK 373
Query: 598 YGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLAL 657
Y IP GG + Y +E+ +L LR I NP ++ +L+ ++ P + +++L+
Sbjct: 374 YAIPYQIVGGFRFY-DRMEIKDILAYLRVIYNPSDEVSLLRIINRPKRGIGQGTISKLS- 431
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLI 717
+ +LY+ A + +T + ++ AFF+ RE S S+ L
Sbjct: 432 -RYARERGISLYKAGTEAESN-----PYLTASFKKRVKAFFDLLEELREKSETLSIDTLT 485
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFI-----RMIDKIL 772
++ Y + + R R +N ++ F + F+ + + L
Sbjct: 486 HQVVTRTGYQRELNEEGTQQARN--------RLENIQEL-FSVIEEFMKGNENKTLGAFL 536
Query: 773 ENQNDLADVE-VALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
E + ++DV+ + +N VTLMT+H +KGLEF VFI+ +++
Sbjct: 537 EEVSLISDVDNMEDNQNVVTLMTLHSAKGLEFPVVFIIGMEE 578
>gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus clausii
KSM-K16]
gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
KSM-K16]
Length = 751
Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats.
Identities = 114/462 (24%), Positives = 210/462 (45%), Gaps = 53/462 (11%)
Query: 358 VLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQD 417
V + D +Y + Q NA +F D+ IQ+ E + Y K+ + VDEYQD
Sbjct: 172 VFEQVAADVYSEYEKRLKQNNALDFDDLIMKTIQLFNEVPEVLDFYQRKFQYIHVDEYQD 231
Query: 418 NNHTQERMLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLK 476
N Q R+++LL + +N +VGD QSIYR+R AD Q KD+ + +ILL+
Sbjct: 232 TNKAQYRLVKLLGDRLQNICVVGDSDQSIYRWRGADIQNILSFEKDYPD----ATVILLE 287
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE--TQVLIYD 534
+N+RS +L A NSV + G+ K + +N+ ++ +Y+
Sbjct: 288 QNYRSTKTILKAANSVIAN------------------NGNRKPKNLWTENDEGAKISVYE 329
Query: 535 TKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQT 594
+Q E + V ++I E ++D+ +L + ++ I +
Sbjct: 330 AATEQ---------------AEAQFVVEKIKEAAAEPGFSYKDVAILYRTNAQSRIIEEY 374
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
F + GG + Y + E+ +L LR + NP +D +L ++ P + +
Sbjct: 375 FVKSNLDYNIVGGTKFYDRK-EIKDVLAYLRLVANPDDDISLQRVVNVPKRGIGATTVDK 433
Query: 655 LALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLY 714
+A D H ++++ + G+ +Q+ + A KL F + +W S+
Sbjct: 434 IAA--YADAHGLSMFKAL-----GELEQIGVTARA-RTKLVEFRDQVNNWVHMQDYLSVT 485
Query: 715 DLIWKIYNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKI 771
+L+ ++ + Y + + + +++ R N+ FEK + K L F+ + +
Sbjct: 486 ELVEELLDKTGYREMLKNEQTIEAQSRLENIDEFITVTQEFEKRSEEKDLVSFLTDL-AL 544
Query: 772 LENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
+ + + L E A K A+TLMT+H +KGLEF YVF++ +++
Sbjct: 545 VADIDQLDKDEEATKKEAITLMTLHSAKGLEFPYVFLIGMEE 586
>gi|153886695|ref|ZP_02007849.1| UvrD/REP helicase [Ralstonia pickettii 12D]
gi|151576869|gb|EDN41271.1| UvrD/REP helicase [Ralstonia pickettii 12D]
Length = 1173
Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats.
Identities = 226/962 (23%), Positives = 383/962 (39%), Gaps = 184/962 (19%)
Query: 42 NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRL 101
+++V A AGSGKT++++ R++ +L G + TFT KAA E+++RL + +
Sbjct: 28 SVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDILAQLAGA 87
Query: 102 TNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKN 161
++ +++ ++ +T D A + Y R+L+ S +
Sbjct: 88 DDEGVVRELIA------RTVDERDAPALIETARGLYA---------RVLESPSRMAI--- 129
Query: 162 DVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLEN 221
D F F G + V+ A R+D+ R+ + W
Sbjct: 130 DTFHGWFGSLLRGAP---LSSGVQQGASLREDAGRLRR---------------EAW--AP 169
Query: 222 FLKG--ANTYKDFSAIPEQEVKDFLNTLQETAL---ALRDVTDLEDYKQVTAKGTPTAAY 276
F +G A + D A E + D + Q L +D YK A G P A
Sbjct: 170 FWRGLLAEDHADLRAAYES-LADLVGDFQAGRLLDAMFHQRSDWWAYK-TQAGGRPLDAL 227
Query: 277 QRHL-------KMIEQLQDWVLHFDSL-------YGRDGLGKLANDIATLIPS--GNDVT 320
L +IE LQD L D L G GK A I + + + G DV+
Sbjct: 228 DELLGDDATVDPLIEALQDAALLADMLRVSGLLGQGAAAEGKRAVAIESAVTAARGMDVS 287
Query: 321 VAGVKYPVFRSLHSRLR-------------------GLKHLETIFKYQDQSLPLLQVLQS 361
+ F +L + G +H +T+ L Q+
Sbjct: 288 DEAARAQAFEALFAAFHTQAGKARACKPTKALIKAIGDEHAQTLVTLHTTLCETLTAFQA 347
Query: 362 --------------FTLD--FSKQYLQAKMQENAFEFSDIAHFAIQILEEND--AIRQLY 403
F L +Y K Q A +F+D+ A ++++++D A Q+
Sbjct: 348 RRQEARVRAVNAALFALGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVR 407
Query: 404 ID-KYHEVMVDEYQDNNHTQERMLELLSNGR-------NRFMVGDIKQSIYRFRQADPQI 455
+D +Y +++DE+QD N Q R+L+ G + F+VGD KQSIYRFR+AD ++
Sbjct: 408 LDARYKHLLLDEFQDTNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARL 467
Query: 456 FNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEI-LYDDTHQLVA 514
F+ ++ + ++ R+ VL+ N+VF L A G+ +Y + V
Sbjct: 468 FDAA-REMLVAEFNATVLRTNRTRRNAPAVLEWVNAVF--LQARARGDYPIYAEQSTAVD 524
Query: 515 GSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED----------DSNQISLGEVKLVAKEI 564
+ Q + P L+ ++ +Q + A D DS + + G + VA +
Sbjct: 525 APTGQALLLP------LVPVSEAEQADEAAPRDTLTEPREEAGDSQRYAEG--RQVAACL 576
Query: 565 IRLHNEEK---------VQFEDITLLVSSRTRNDGILQTFDDYGIPLVTD--GGEQNYLK 613
LH E+ V++ D LLV + + D G+P ++ GG L+
Sbjct: 577 RALHANERIREGGVERAVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPRRGGLLATLE 636
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
++++ +LD L + P D +L +LRSP+FA ++ L LA Q +E++
Sbjct: 637 ALDLCALLDFLMT---PQADLSLAHVLRSPVFAASDEHLIALA-QFGEGAAALTWWERL- 691
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLS-WREFSLLNSLYDLI-WKIYNDKFYYDYVG 731
L A + + LS W + ++DL+ + +Y + Y
Sbjct: 692 ---------TALAGHADGSDTLRYAHRMLSRWLAVAPTLPVHDLLDYIVYTGELKRRYAE 742
Query: 732 SLPKS--EQRQANLYALALRADNFEKTGFKGLSRF---IRMIDKILENQN---------- 776
P + +Q ANL A A + + + L +F +R I + E+++
Sbjct: 743 RAPAAIRDQVLANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTE 802
Query: 777 --DLADVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVG 833
D D EVA +AV ++T+H SKGLE +V +L+ + D LI
Sbjct: 803 APDTIDAEVASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQA 862
Query: 834 IKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
+ + + E L + L K+E LA E LLYVAMTR+ + L +
Sbjct: 863 PAHFSAFGKTSERGLAREL----------LFKQENALAE-RENWNLLYVAMTRARQALIV 911
Query: 894 VG 895
G
Sbjct: 912 SG 913
>gi|126355107|ref|ZP_01712113.1| UvrD/REP helicase [Pseudomonas putida GB-1]
gi|126319617|gb|EAZ70469.1| UvrD/REP helicase [Pseudomonas putida GB-1]
Length = 1061
Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats.
Identities = 209/898 (23%), Positives = 377/898 (41%), Gaps = 127/898 (14%)
Query: 44 LVSASAGSGKTFVMIERIMDKIL-RGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLT 102
+SA AGSGKT+ + E + ++ + V + + +TFT KAA EL+ER+ + ++ ++
Sbjct: 9 FISAGAGSGKTYRLTELLYQELTSQQVQPEGIIATTFTRKAAAELRERVRSHLLDKGQVG 68
Query: 103 NDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKND 162
+A+ Q A IGT+++ +L+ + + G+ P R+L+++ + LL N
Sbjct: 69 LASAMGQ-----------ARIGTVNSLCGQLLEHFAFEAGMPPQQRVLEEEQAKVLL-NQ 116
Query: 163 VFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDF-SQATDNPQRWLLEN 221
D + G + E F + R ++ + D S + + R LL+
Sbjct: 117 AVDSVLD----GTRMEAFLAISRRLG---------LEVTLQQSDLPSDSWQDALRRLLDQ 163
Query: 222 FLKG---ANTYKDFSAIPEQEVKDFLNTLQETAL---ALRDVTD-LEDYKQVTAKGTPTA 274
+DF+A Q++ ++ + L LR + D L + +K TA
Sbjct: 164 LRSNDIDLERARDFAARNAQDLLAHFPSMTSSDLDAELLRTLPDVLALLQDANSKVKLTA 223
Query: 275 AYQRHLKMIE-QLQ-------DWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVKY 326
Y LK + +LQ DW L K A + A L P VT +Y
Sbjct: 224 TYITLLKDFQRELQQGNARWSDWA----------KLAKTAPE-AKLTPLVAGVTERVQRY 272
Query: 327 PVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIA 386
LH+ LR ++L+ IF + +D + Y + K++ +F+D
Sbjct: 273 AEHPRLHADLR--EYLDQIF--------------NLAIDALQLYSRNKIELGVLDFADQE 316
Query: 387 HFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERM-LELLSNGRNRFMVGDIKQSI 445
H +++L+ N A+ ++ + VMVDE+QD + Q + L+L + + VGDIKQ+I
Sbjct: 317 HALLRLLD-NPAVIEVLEQELDLVMVDEFQDTSPMQLAIFLKLARIAKRVYWVGDIKQAI 375
Query: 446 YRFRQADPQIFNQKFKDFQEHPEHGKLI-LLKENFRSQSEVLDATNSVFTHLMDEAVG-- 502
Y FR +D + P G + +L +++RS+ E+++ TN VFT ++
Sbjct: 376 YGFRGSDCALMQAILGAL---PGMGGVKEVLPKSWRSRPELVELTNEVFTQAFSNSLSAD 432
Query: 503 EILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAK 562
E+ T Q G A I D + + Q A+ + Q+ ++ K
Sbjct: 433 EVRLTPTRQDPLGGPA---------FANWILDGSNAEQQTCALAEGIGQLLESRYQVFDK 483
Query: 563 EIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLD 622
+Q DIT+L S + + G+P T + L + E + L
Sbjct: 484 TT---QQARDLQAGDITVLCYSHSNVAKVAAALAAAGLPCST--AQPGLLATPEATLALA 538
Query: 623 TLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLY-EKMENARNGQGQ 681
LR +++P + A A + S A + + L L H Q + E+ +A
Sbjct: 539 CLRRLNDPTDTLA-TAQIVSMTSAEEPESWVAERLHYLHAGHPQGQWREQTVDAHAAH-- 595
Query: 682 QVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQA 741
L+ E + D + + +L LI + + + + ++++R A
Sbjct: 596 --PLVAELARLRADLPL--------LTPVEALQRLIAECDLARCVTGWSTTPAQAQKRLA 645
Query: 742 NLYALALRADNFEKTGFKGL-----SRFIRMIDKILENQNDLADVEVALPK-NAVTLMTI 795
NL AL A ++ GL S + + + ND +A P +AV +MT
Sbjct: 646 NLDALLELAQRYQDLCRNGLGAASISGLVLWLGQTAGAGND----ALATPALDAVRVMTH 701
Query: 796 HKSKGLEFKYVFILNI-----DKKFSIQDMTSPLILSRQNGVGIKYIADMKEEL-EEKLL 849
H SKGLE+ V ++++ ++ +S+ S L + + ++I L ++K +
Sbjct: 702 HASKGLEWPVVILMDLARDVGERLWSVS-AQSDSALDPNDPLRDRFIRYWPWPLGKQKNV 760
Query: 850 PTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYD 907
P DT+ + R + E RLLYV+MTR+ + ++ + S+ G D
Sbjct: 761 PLA----DTIGKTPAAKACRDEAVEEAKRLLYVSMTRA-RDFLVIARSSRRLTGPWLD 813
>gi|116513593|ref|YP_812499.1| Superfamily I DNA and RNA helicase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116092908|gb|ABJ58061.1| Superfamily I DNA and RNA helicase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 753
Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats.
Identities = 140/602 (23%), Positives = 262/602 (43%), Gaps = 123/602 (20%)
Query: 330 RSLHSRLRGLKH-LETIFKYQDQSL-PLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAH 387
R++ S++ K+ L+T +Y+D ++ P +V+ D K+Y + ++ +F D+
Sbjct: 140 RNILSQISNAKNRLQTPKQYEDSAVGPFEKVVA----DVYKKYQASLERDQILDFDDLIM 195
Query: 388 FAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNG-RNRFMVGDIKQSIY 446
+ + + + Y K+ ++VDEYQD N Q + LL++G N +VGD QSIY
Sbjct: 196 QTLTLFKASPDTLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGYHNICVVGDADQSIY 255
Query: 447 RFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILY 506
+R A+ + +F+ ++ + + L++N+RS +L A NSV H + ++
Sbjct: 256 GWRGAN----MENILNFEHDYKNAQTVKLEQNYRSTGHILKAANSVIDHNENRKAKKLWT 311
Query: 507 DDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIR 566
D +K+ Y Q Q ++D E + V +I
Sbjct: 312 DK-------GDGEKVHYYQA-----------QSDRD-------------ETRFVLAKIKE 340
Query: 567 LHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRS 626
+++K +++D +L + ++ G+ +T + +P GG + Y + E+ ++ L+
Sbjct: 341 EVDKKKRRYQDFAVLYRTNAQSRGMEETLVEANVPYQIVGGHKFYDRK-EIKDIMAYLKL 399
Query: 627 IDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLI 686
+ NP + + ++ P + A+LA D+ +YE M N ++ I
Sbjct: 400 VANPSDSMSFNRIINVPKRGIGQATTAKLAA--FADEMGGGIYEAMRNV------ELAPI 451
Query: 687 TEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYAL 746
+ A + KL AF + + ++ +++ +L KI D Y+ +L K E+ Q +L A
Sbjct: 452 SSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILED---LGYIKAL-KEEEAQGSLEAA 507
Query: 747 ALRADNF-----------------EKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNA 789
A R +N E LS F+ + +L +Q+DL + + +
Sbjct: 508 A-RLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEV-SLLSDQDDLEESD-----DR 560
Query: 790 VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL 849
VTLMT+H +KGLEF VF++ +E+ +
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIG---------------------------------MEDNIF 587
Query: 850 PTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGD-QYDG 908
P + D P Q L E+ RL YV +TR+ ++LYL ++ G QY+
Sbjct: 588 PLSRAIKDEDPNQ----------LEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNS 637
Query: 909 KS 910
+S
Sbjct: 638 QS 639
>gi|76258368|ref|ZP_00766024.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
gi|76166897|gb|EAO61021.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
Length = 644
Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats.
Identities = 144/563 (25%), Positives = 233/563 (41%), Gaps = 129/563 (22%)
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDN 418
L F ++Y +A Q NA +F D+ A ++L ++ + Y ++ V+VDEYQD
Sbjct: 167 LDRFIAACYRRYQRALEQANALDFDDLILTAYRLLSDDPDLLATYQQRWQHVLVDEYQDT 226
Query: 419 NHTQERMLELLS-----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI 473
+ +Q ++ELL+ R+ F+VGD QSIY FR AD I N+ DF + ++I
Sbjct: 227 DPSQHALIELLTRPTAQRPRSLFVVGDAMQSIYGFRNADHSIINRFATDFPD----ARVI 282
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L N+RS+ +LDA ++ H A E+ ++A+ + +E VLI
Sbjct: 283 ELTTNYRSRQPILDAAYAIIRHSRSVAPMELR----------AAARNV----DERCVLIS 328
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQ 593
+ +D + D+++Q VA+ I L + + + DI +L +R + Q
Sbjct: 329 EARDSR-------DEADQ--------VARSIADLQRQGR-RLRDIAVLYRTRHMSRPFEQ 372
Query: 594 TFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFD----E 649
IP GG + ++V V L LR I NP ++ +L + P
Sbjct: 373 ALRHARIPYQVRGGVSFFDRAV-VRDALAYLRCIANPADNLSLTRIANVPARGLGGQALA 431
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
A A Q+LP + + +ARN G + + A R F+L
Sbjct: 432 TIAAYAAAQSLP------ISTALGHARNIPGLSPRAVEGA--------------HRLFAL 471
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
L W++ D+V L ++ + ALA R D E + ++ +
Sbjct: 472 LQRW----WRLAESTMPPDHV--LADVLEQSGYMAALAERFDAEELAEARA---HLQELL 522
Query: 770 KILENQNDLADV--EVALPKNA---------VTLMTIHKSKGLEFKYVFILNIDKKFSIQ 818
+ E DL EVAL N V L+TIH +KGLE+ +VF++
Sbjct: 523 RAAEEHTDLRSFLQEVALMTNTDDEDDERDRVQLLTIHAAKGLEWPFVFVVG-------- 574
Query: 819 DMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMR 878
LEE LP + D A + E+ R
Sbjct: 575 -------------------------LEEGTLPHERSIGDP------------AAIEEERR 597
Query: 879 LLYVAMTRSEKKLYLVGKGSQEK 901
L YVA+TR+ ++LYL S+++
Sbjct: 598 LCYVALTRAAERLYLSWTASRQR 620
>gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 753
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 131/565 (23%), Positives = 241/565 (42%), Gaps = 117/565 (20%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
D K+Y + ++ +F D+ + + + + Y K+ ++VDEYQD N Q
Sbjct: 173 DVYKKYQASLERDQILDFDDLIMQTLTLFKASPDTLAYYQQKFRYLLVDEYQDTNEAQYE 232
Query: 425 MLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+ LL++G N +VGD QSIY +R A+ + +F+ ++ + + L++N+RS
Sbjct: 233 LCRLLADGYHNICVVGDADQSIYGWRGAN----MENILNFEHDYKNAQTVKLEQNYRSTG 288
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+L A NSV H + ++ D +K+ Y Q Q ++D
Sbjct: 289 HILKAANSVIDHNENRKAKKLWTDK-------GDGEKVHYYQA-----------QSDRD- 329
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLV 603
E + V +I +++K +++D +L + ++ G+ +T + +P
Sbjct: 330 ------------ETRFVLAKIKEEVDKKKRRYQDFAVLYRTNAQSRGMEETLVEANVPYQ 377
Query: 604 TDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQ 663
GG + Y + E+ ++ L+ + NP + + ++ P + +LA D+
Sbjct: 378 IVGGHKFYDRK-EIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTTKLAA--FADE 434
Query: 664 HKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYND 723
+YE M N ++ I+ A + KL AF + + ++ +++ +L KI D
Sbjct: 435 MGGGIYEAMRNV------ELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILED 488
Query: 724 KFYYDYVGSLPKSEQRQANLYALALRADNF-----------------EKTGFKGLSRFIR 766
+ Y+ +L K E+ Q +L A A R +N E LS F+
Sbjct: 489 ---FGYIKAL-KEEEAQGSLEAAA-RLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLA 543
Query: 767 MIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
+ +L +Q+DL + + + VTLMT+H +KGLEF VF++
Sbjct: 544 EV-SLLSDQDDLEESD-----DRVTLMTLHAAKGLEFPVVFLIG---------------- 581
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+EE + P + D P Q L E+ RL YV +TR
Sbjct: 582 -----------------MEENIFPLSRAIKDEDPNQ----------LEEERRLAYVGITR 614
Query: 887 SEKKLYLVGKGSQEKLGD-QYDGKS 910
+ ++LYL ++ G QY+ +S
Sbjct: 615 AREELYLTSAYTRMMYGSKQYNSQS 639
>gi|121529938|ref|ZP_01662548.1| conserved hypothetical protein [Ralstonia pickettii 12J]
gi|121302753|gb|EAX43721.1| conserved hypothetical protein [Ralstonia pickettii 12J]
Length = 1173
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 232/964 (24%), Positives = 379/964 (39%), Gaps = 188/964 (19%)
Query: 42 NILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRL 101
+++V A AGSGKT++++ R++ +L G + TFT KAA E+++RL I QL
Sbjct: 28 SVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRL-LDILAQLAA 86
Query: 102 TNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKN 161
+D + + L + T D A + Y R+L+ S +
Sbjct: 87 ADDEGVVRELVAR-----TVDERDAPALIETARGLYA---------RVLESPSRMAI--- 129
Query: 162 DVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIYDFSQATDNPQRWLLEN 221
D F F G + V+ A R+D+ R+ + W
Sbjct: 130 DTFHGWFGSLLRGAP---LSSGVQQGASLREDAGRLRR---------------EAW--AP 169
Query: 222 FLKG--ANTYKDFSAIPEQEVKDFLNTLQETAL---ALRDVTDLEDYKQVTAKGTPTAAY 276
F +G A + + A E + D + Q L +D YK A G P AA
Sbjct: 170 FWRGLLAEDHAELRAAYET-LADLVGDFQAGRLLDAMFHQRSDWWAYK-AQAGGRPLAAL 227
Query: 277 QRHL-------KMIEQLQDWVLHFDSLYGRDGLGK---------LANDIATLIPSGNDVT 320
L +IE LQD L D L+ LG+ +A + A G DV+
Sbjct: 228 DELLGDDATVDPLIEALQDAALLADMLHVSGWLGQGGAAEGKRAVAIESAVTAARGMDVS 287
Query: 321 VAGVKYPVFRSLHSRLR-------------------GLKHLETIFKYQDQSLPLLQVLQS 361
+ F +L + G +H T+ L +Q+
Sbjct: 288 DEAARVRAFDALFAAFHTQAGKARACKPTKALIKAVGDEHARTLVTLHTALCEALTTIQA 347
Query: 362 --------------FTLD--FSKQYLQAKMQENAFEFSDIAHFAIQILEEND--AIRQLY 403
F L +Y K Q A +F+D+ A ++++++D A Q+
Sbjct: 348 RRQEARVRAANAALFALGDALIDRYQAYKRQTRAMDFTDLEWEAARLMQQDDTAAYLQVR 407
Query: 404 ID-KYHEVMVDEYQDNNHTQERMLELLSNGR-------NRFMVGDIKQSIYRFRQADPQI 455
+D +Y +++DE+QD N Q R+L+ G + F+VGD KQSIYRFR+AD ++
Sbjct: 408 LDARYKHLLLDEFQDTNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARL 467
Query: 456 FNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEI-LYDDTHQLV- 513
F+ ++ + ++ R+ VL+ N+VF L A G+ +Y + V
Sbjct: 468 FDAA-REMLVAEFNATVLRTNRTRRNAPAVLEWVNAVF--LQARARGDYPIYAEQSTAVD 524
Query: 514 --AGSSAQKIPYPQNETQVLIYDT-KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNE 570
G + P E + + T +D + DS + + G + VA + LH
Sbjct: 525 APVGKALLLPLVPVLEAERVDETTPRDTLTEPREEAGDSQRYAEG--RQVAACLRALHAS 582
Query: 571 EK---------VQFEDITLLVSSRTRNDGILQTFDDYGIPLVTD--GGEQNYLKSVEVMV 619
E+ V++ D LLV + + D G+P ++ GG L+++++
Sbjct: 583 ERIREGGVERSVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCA 642
Query: 620 MLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQ 679
+LD L + P D +L +LRSP+FA +D L LA + G+
Sbjct: 643 LLDFLMT---PQADLSLAHVLRSPVFAATDDHLIALA-------------------QFGE 680
Query: 680 GQQVQLITE---ALSAKLDA-----FFETFLS-WREFSLLNSLYDLIWKI-YNDKFYYDY 729
G E AL+ + DA + LS W + ++DL+ I Y + Y
Sbjct: 681 GTLALTWWERLTALAGQADASDTFHYAHRMLSRWLAVAPTLPVHDLLDHIVYTGELKRRY 740
Query: 730 VGSLPKSEQRQ--ANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLA-------- 779
P + + Q ANL A A + + + L +F+ + I + D +
Sbjct: 741 AERAPAANRDQVLANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEDESPDEGMQGD 800
Query: 780 -------DVEVALPK-NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNG 831
D EVA +A ++T+H SKGLE +V +L+ + D LI
Sbjct: 801 TDAPDAIDAEVASEGLDAAQILTVHASKGLEAPFVVLLDSHHSDARVDTAGILIDWPPGA 860
Query: 832 VGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKL 891
+ + + E L + D L K+E LA E LLYVAMTR+ + L
Sbjct: 861 QAPTHFSAFGKTSERGL------ARDP----LFKQEHDLAE-RENWNLLYVAMTRARQAL 909
Query: 892 YLVG 895
+ G
Sbjct: 910 IVSG 913
>gi|42524524|ref|NP_969904.1| probable exonuclease RexA [Bdellovibrio bacteriovorus HD100]
gi|39576733|emb|CAE80897.1| probable exonuclease RexA [Bdellovibrio bacteriovorus HD100]
Length = 1007
Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 140/560 (25%), Positives = 242/560 (43%), Gaps = 76/560 (13%)
Query: 347 KYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDK 406
+Y D+ + + +F + ++Q K++ SD+ A +I + + +
Sbjct: 258 EYWDRHEKNCALFEELAQNFCRDFMQTKLESGLLSMSDLETLASKITLDQPEAAVKFSQE 317
Query: 407 YHEVMVDEYQDNNHTQERMLELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH 466
+ MVDEYQD + Q +L L + F+VGD +QSIY FR A ++F +K + +
Sbjct: 318 WDFWMVDEYQDTSPVQVELLRHLVGEKPVFIVGDPQQSIYLFRGARSEVFREKVAEIE-- 375
Query: 467 PEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQN 526
+ G + + N+RS EVL+ N FT L Q A + +K P
Sbjct: 376 AQQGDVQVKLVNYRSSPEVLEFFNHYFTRL------------GSQFAAMTPDEKKPKKGP 423
Query: 527 E---TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVS 583
E QV++ +T D ED+++ L V + +E+++ E I +L
Sbjct: 424 EVPVVQVVLSETGD--------EDETSAEILATVARI-QELLQAGTSP----EQICVLGR 470
Query: 584 SRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
+ + I + +YG+PL G Y + EV+ L L+ + NP ++ VALLRSP
Sbjct: 471 THRTLEDIAKVAQEYGVPLQLHSGSGFYERR-EVLDALAVLKFLVNPHDNANFVALLRSP 529
Query: 644 MFAFDEDDLARLA---LQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFET 700
A + ++ + + ++NL +K E + +AL A+ +
Sbjct: 530 WLALPDSEILSYCHSFRHSFWKEAQKNLDQKPE-------IHPLRVMKALLAQAEV---K 579
Query: 701 FLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLY-ALALRADNFEKTGFK 759
LSW +L +L DL +DY + + +R+ANL+ ++L + + GF
Sbjct: 580 GLSW---TLKKALIDL--------GLFDYSARIDSTGRREANLWKVVSLLSQEERRPGFN 628
Query: 760 GLSRFIRMIDKILENQN-----DLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKK 814
++ +D LE + + AD + V MT+H SKGL+F V + +
Sbjct: 629 ----YLDFLDSSLETLSTDEGGEDADATPVIEPKRVNFMTVHASKGLQFDQVILPGMGND 684
Query: 815 FSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLS 874
+ +LS G + +K EE V D + +L KRE
Sbjct: 685 ---PRASHAPVLSIHEKTG---LWSLKVRNEETQAMAGSVLADQIVEELRKRETE----- 733
Query: 875 EQMRLLYVAMTRSEKKLYLV 894
E R+LYVA+TR++ + L+
Sbjct: 734 EFNRVLYVALTRAKSGVTLL 753
>gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
gi|133737857|emb|CAL60902.1| putative exonuclease V [Herminiimonas arsenicoxydans]
Length = 1096
Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats.
Identities = 138/550 (25%), Positives = 249/550 (45%), Gaps = 57/550 (10%)
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQIL--EENDAIRQLYID-KYHEVMVDEYQDNNHTQ 422
+ + Y K ++ F+F+D+ A ++L EE+ A Q +D +Y V++DE+QD N Q
Sbjct: 369 YLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHVLLDEFQDTNPLQ 428
Query: 423 ERMLELLSNGR-------NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILL 475
+++ N + F+VGD KQSIYRFR+A+P++F+ + + +
Sbjct: 429 WSIVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAKETLV--AQGADFLRT 486
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSA-QKIPYPQNETQVLIYD 534
+ R+ + ++D N+ F V +Y L A ++P Q + Q +
Sbjct: 487 NQTRRNAAGIVDVLNASF-------VANPIYQPQTTLEQSPGAVWQLPLVQQDKQEKVVW 539
Query: 535 TKDQQNQDLAV--EDDSNQISLGEVKLVAKEIIRLHNEEKVQ-FEDITLLVSSRTRNDGI 591
+ Q L E++ + L E + VA I++ E K + + D+ LLV RT
Sbjct: 540 SPVQLRDPLTTPREEEEDARRLEEGRAVALAILQARKELKSERWSDVMLLVKKRTHLRAY 599
Query: 592 LQTFDDYGIPLVTD--GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDE 649
+ + GIP +D GG L+S+EV ++ L + P ++ AL +L+SP+ A +
Sbjct: 600 ERALREAGIPFASDKRGG---LLESLEVADLIALLNFLITPHDNLALAHVLKSPIMAAGD 656
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
D+L LA ++ ++ + ++ Q + +L + AL + E +L
Sbjct: 657 DELIALA-----ERREKTWWLRL------QAEVTELSSPAL-LRAAGLLEKWLHLAPRLP 704
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
++ L D I + Y S Q N+ A A N + + L +FI +
Sbjct: 705 VHDLLDRILHEGDVVARYAQTASPLVRGQVLGNIEAFTELALNLDAGRYPSLPKFIDALR 764
Query: 770 KILENQN----DLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLI 825
++ ++ + D AD++ AL +AV ++TIH +KGLE V +L+ + +D L
Sbjct: 765 RLQKSADSDAPDEADIDAAL--DAVRILTIHGAKGLEAPIVVLLDANHSDGARDDVGVLC 822
Query: 826 LSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMT 885
Q+ + + + E + DTL + + +L+ E LLYVA T
Sbjct: 823 AWPQDRDAPTHFSVFGRQAER------GAARDTLFAE--EEQLK---QQEDWNLLYVATT 871
Query: 886 RSEKKLYLVG 895
R++ L + G
Sbjct: 872 RAKNLLIVSG 881
>gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 787
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 131/540 (24%), Positives = 222/540 (41%), Gaps = 118/540 (21%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL-SNG---- 432
NA +F ++ +Q+ +N+ + + ++ ++VDEYQD N TQ ++ LL +NG
Sbjct: 222 NALDFDNLIWIPVQLFRQNEQVLAYWHQRFRHILVDEYQDTNRTQYELIRLLATNGETRR 281
Query: 433 -----RNR--FMVGDIKQSIYRFRQADPQI---FNQKFKDFQEHPEHGKLILLKENFRSQ 482
RNR F+VGD QSIYRFR AD I F + F D + LI L+EN+RS
Sbjct: 282 SQLDWRNRSIFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTRTLIKLEENYRST 341
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQD 542
+ +L A N++ E + ++L P Q + ++ D+
Sbjct: 342 ATILQAANALIEK-NTERIDKVLR---------------PTRQQGNPIFLHQADDE---- 381
Query: 543 LAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFE--DITLLVSSRTRNDGILQTFDDYGI 600
+ E + V I RLH + F D +L ++ + +GI
Sbjct: 382 -----------IAEAEFVVNTIRRLHGQNANAFSWGDFAILYRINAQSRPFEEVLLRWGI 430
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL----A 656
P GG + Y + E+ +L LR + NP + ++L+ ++ P + L +L A
Sbjct: 431 PYTVVGGLRFYDRK-EIKDVLAYLRVVANPADSFSLLRIINVPRRGIGKSTLDKLTEAAA 489
Query: 657 LQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDL 716
N+P L+ + + + V + + + F + W + S L
Sbjct: 490 ALNVP------LWAILSDETS-----VSSLAGRSAKPVIQFAQLIQHWHRQASQTSAATL 538
Query: 717 IWKIYNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEKTGFK-GLSRFIRMIDKILE 773
I + D Y + + + ++E+R AN+ L A FE+ L F+ +
Sbjct: 539 IEGLLRDSGYLEDLKAQGTDEAEERAANVMELYNAARQFEEEQEDPSLEAFLSNVSL--- 595
Query: 774 NQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVG 833
+DL +++ K V+LMT+H SKGLEF VF++ +
Sbjct: 596 -ASDLDNLQEGAEK--VSLMTLHSSKGLEFPVVFLVGV---------------------- 630
Query: 834 IKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
E+ L P + D A L E+ RL YV +TR+ ++LY+
Sbjct: 631 -----------EQGLFPNFRALEDP------------AALEEERRLCYVGITRAREQLYI 667
>gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 1083
Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats.
Identities = 138/549 (25%), Positives = 249/549 (45%), Gaps = 65/549 (11%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQIL--EENDAIRQLYID-KYHEVMVDEYQDNNHTQ---- 422
Y K ++ F+F+D+ A ++L EE+ A Q +D +Y V++DE+QD N Q
Sbjct: 365 YQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNPLQWSIV 424
Query: 423 ERMLELLSNGRNR---FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENF 479
+ L+ N +R F+VGD KQSIYRFR+A+P++F+ + + + +
Sbjct: 425 QAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLV--AQGADFLRTNQTR 482
Query: 480 RSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY---DTK 536
R+ ++D N F L ++ AG+ Q Q +++ +++ + +
Sbjct: 483 RNARGIVDVLNESFRANPIYTAQTTLSNE-----AGAVWQLPLVQQEKSEKVVWSPANMR 537
Query: 537 DQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHN-EEKVQFEDITLLVSSRTRNDGILQTF 595
D + E+D+ ++ G + VA+ I+R ++ D+ LLV RT +
Sbjct: 538 DPLTEPREEEEDARRLQEG--RAVAQAILRAREVTPGTKWSDVMLLVKKRTHLSAYERAL 595
Query: 596 DDYGIPLVTD--GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLA 653
+ GIP +D GG L+S+EV ++ L + P ++ AL +L+SP+ ++DL
Sbjct: 596 REAGIPFASDRRGG---LLESLEVADLIALLTFLITPHDNLALAHVLKSPIMGATDNDLI 652
Query: 654 RLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
LAL + E G+ Q +L +E L + + W E + +
Sbjct: 653 ALAL-------------RAEKTWWGRLHQAELNSEVLQRAVSLLEK----WLELAARLPV 695
Query: 714 YDLIWKIYNDK---FYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
+DL+ +I ++ Y S Q AN+ A A N + + L +FI + +
Sbjct: 696 HDLLDRILHEGDVVARYAQAASPLVRGQVLANIEAFTELALNLDAGRYPSLPKFIDALRR 755
Query: 771 ILENQN----DLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
+ ++ + D A+++ +L +A ++TIH +KGLE V +L+ + +D L
Sbjct: 756 LQKSADSDAPDEAEIDASL--DAARILTIHGAKGLEADIVVLLDANHSDPARDDYGVLCE 813
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTR 886
+Q + + + E + D L + E +L T E LLYVA TR
Sbjct: 814 WKQEADAPNHFSVFGRQAER------GAARDYLFAE----EEQLKT-QEDWNLLYVATTR 862
Query: 887 SEKKLYLVG 895
++K L + G
Sbjct: 863 AKKLLIVSG 871
>gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
Length = 1177
Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats.
Identities = 150/572 (26%), Positives = 248/572 (43%), Gaps = 71/572 (12%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEEND--AIRQLYID-KYHEVMVDEYQDNNHTQER 424
++Y K Q A +F+D+ A +++ + D A Q+ +D +Y +++DE+QD N Q R
Sbjct: 370 ERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDTNPMQWR 429
Query: 425 MLELLSNGRNR-------FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKE 477
+L+ G F+VGD KQSIYRFR+AD ++F+ +D ++
Sbjct: 430 ILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAA-RDMLVAGFDATVLRTNR 488
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGE-ILYDDTHQLVAGSSAQK-----IPYPQ----NE 527
R+ VL+ N+VF L A G+ +Y + V + Q +P P+ E
Sbjct: 489 TRRNAPAVLEWVNAVF--LQARARGDYAIYAEQSTAVDAPAGQALLLPLVPVPEAVQTGE 546
Query: 528 TQVLIYDTKDQQNQ-DLAVEDDSNQISLGEVKLVAKEIIRLHNEEK-VQFEDITLLVSSR 585
T T+ ++ D D+ Q++ L A E +R + E+ V++ D LLV +
Sbjct: 547 TAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGGERPVRWSDFQLLVRRK 606
Query: 586 TRNDGILQTFDDYGIPLVTD--GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
+ D G+P ++ GG L+++++ +LD L + P D L +LRSP
Sbjct: 607 RYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMT---PQADLPLAHVLRSP 663
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+FA +DDL LA Q +E++ A GQ +A+L
Sbjct: 664 IFAVTDDDLIALA-QTGEGASAPTWWERL-TALAGQPHA--------AAQLRHAHRLLSR 713
Query: 704 WREFSLLNSLYDLIWKI-YNDKFYYDYVGSLPKS--EQRQANLYALALRADNFEKTGFKG 760
W + ++DL+ I Y + Y +P++ EQ ANL A A + + +
Sbjct: 714 WLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDGGRYPS 773
Query: 761 LSRFIRMIDKILEN----------QNDLADVEVALPK-------NAVTLMTIHKSKGLEF 803
L +F+ + I + Q D A+ A+ +AV ++T+H SKGLE
Sbjct: 774 LPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASEGLDAVQILTVHASKGLEA 833
Query: 804 KYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQL 863
+V +L+ + D LI + + + E + D L Q
Sbjct: 834 PFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGR------ARDPLFAQ- 886
Query: 864 NKRELRLATLSEQMRLLYVAMTRSEKKLYLVG 895
E LA E LLYVAMTR+ + L + G
Sbjct: 887 ---EAALAE-RENWNLLYVAMTRARQALIVSG 914
>gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus
Protochlamydia amoebophila UWE25]
Length = 1166
Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats.
Identities = 201/896 (22%), Positives = 366/896 (40%), Gaps = 134/896 (14%)
Query: 44 LVSASAGSGKTFVMIERIMDKIL-------RGVTIDQLFISTFTVKAAGELKERLEKKIT 96
L+ ASAG+GKTF I+ I+ ++L + + ++ + TFT A +LK R+ I
Sbjct: 13 LLEASAGTGKTF-SIQNIVVRLLIENQLEQEALPLSKILVVTFTKAATRDLKLRIRLNIE 71
Query: 97 EQLRLTND--------------------------TALKQFLSEQLLGLQTADIGTMDAFT 130
L + N+ K+ L + L A I T+ AF
Sbjct: 72 YALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQAQIFTIHAFC 131
Query: 131 QKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKL-VRNFAG 189
+++ QY I + E+ +++ + +RT + E F+ +
Sbjct: 132 ARMLRQYA----IESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLENFSPAQLEIILK 187
Query: 190 NRKDSSNFRQIIYKIYDFSQATDNPQRWLLENFLKG-ANTYKDFSAIPEQEVKDFLNTLQ 248
+ D + I Y+F + Q + + FL+G N + +S ++DF Q
Sbjct: 188 HDPDQKKLLRAIQSGYEFEELPTFQQ--IYQQFLEGMQNLQRTYSISSSLLMEDF----Q 241
Query: 249 ETALALRDVTDLEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLG-KLAN 307
E A R+ YK +K R + + +Q + V +FD L DGL LA
Sbjct: 242 EQAPFFRN------YKGAKSKADTLIKISRFVALFDQTEWTVENFDQLIC-DGLEWVLAL 294
Query: 308 DIATLIPSGNDVTVAGVKYPVFRSL-HSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDF 366
D L N + YP F +L H L ++ +D+S+ L+ L
Sbjct: 295 DPKLL---KNPAASFRLNYPGFTALLHHTLE-----RVVYLARDESI-LIARLAKACQKL 345
Query: 367 SKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERML 426
+ Y + +E D+ + + + ++Q+ + Y ++DE+QD + Q ++
Sbjct: 346 LRNY---QREEEKLSPDDLLRKMDWAIGQENFLKQIQM-IYQAAIIDEFQDTDPLQWQIF 401
Query: 427 ELLSNGRNR------FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR 480
L +++ ++VGD KQSIY FRQAD + + H L N+R
Sbjct: 402 RRLFLPQDKTWKGYLYLVGDPKQSIYSFRQADIYTYLAAAQALG----HEHCFSLDVNYR 457
Query: 481 SQSEVLDATNSVFTHLMDEA---VGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
SQ +++A N +F+ + + + T+Q V S+ + ++E + + D
Sbjct: 458 SQPALVNALNVLFSPDHTPKFIPLPKTNFHLTYQPVFASTFNQTRLFEDEKGAVHFFMGD 517
Query: 538 QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDD 597
N+ + D Q +A+EI RL ++ + + +LV R + + + FD
Sbjct: 518 GSNKKNSTIQDLEQKVF--FPFIAQEIRRLRKQKTLAYSQFAVLVRDRYQALRLAEYFDS 575
Query: 598 YGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLAL 657
Y +P + G + +S + ++D ++++ +P N L LL + + + + L
Sbjct: 576 YQLPYLNQRG-TSLAESPALNALIDLIKAVLHPQNIGTLRTLLGNSLIGWSHEKL----- 629
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLI 717
H + E + + Q + LI + S D F ++ + S+L L +
Sbjct: 630 ------HDSSNLESILSVI--QSLKQVLIEQGFSIFYDRFLQSCWGKNKLSILEQL---L 678
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQND 777
K FY+D + + + E G +GL F+ K EN++
Sbjct: 679 AKEGGVDFYHDL-----------QQIAEIVINHQYHEWNGPEGLIPFLDQFQKWDENEDP 727
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYI 837
K+ + ++T+H SKGLEF VF L + ++ S +D P+
Sbjct: 728 RVKRFQDPSKDGIKILTLHVSKGLEFDIVFALGLIQRNSFKDELIPI------------- 774
Query: 838 ADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
++E + L+P + S L Y E+ +E+MR LYVAMTR++ +LY+
Sbjct: 775 ---EKEGKFVLIPLEESSEQRLHYC---EEID----AEKMRQLYVAMTRAKYQLYI 820
>gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
Length = 1003
Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats.
Identities = 123/498 (24%), Positives = 226/498 (45%), Gaps = 57/498 (11%)
Query: 343 ETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQL 402
E I + + LQ + L + Y + F+F + + +LE+ + IR+
Sbjct: 211 EKILENGESKSLALQAFKYMVLISKEIYEGFTIDNFEFDFKGVLEKTLDVLEDEN-IRKK 269
Query: 403 YIDKYHEVMVDEYQDNNHTQERMLELLSNGRNR-FMVGDIKQSIYRFRQADPQIFNQKFK 461
Y +++ +++DE+QD N+ Q+ + + L +N F VGD KQSIYRFR +D +F + K
Sbjct: 270 YQERFKYIIIDEFQDTNYLQKELFDKLHTSKNYLFYVGDRKQSIYRFRNSDVSVFLKTQK 329
Query: 462 DFQEHPEHGKLILLKENFRSQSEVLDATNSV-------------------FTHLMDEAVG 502
DF+++ E +++ LKEN+RS S +++ N + F L +
Sbjct: 330 DFEKNNE--EVLALKENYRSNSALVEYFNFISKNKIFNKQLVTGVEKYETFKTLEPDIYE 387
Query: 503 EILYDDTHQLVAGSSAQKIPYPQ---NETQVLI-YDTKDQQNQDLAVEDDSNQISLGEVK 558
++ +D+ L + + + P NE I Y +++ ++L +E ++ + K
Sbjct: 388 KLWFDEKMDLSISTISCEGNIPSLNDNEKGGRIKYIIVEEETKNL-LEKEAEIAAFIVKK 446
Query: 559 LVAKEI-IRLHN----EEKVQFEDITLLVSSRTRNDGILQT-FDDYGIPLVTDGGEQNYL 612
LV K+I ++ N ++++ + D +L S + + ++ F+ YGIPL GG+ Y
Sbjct: 447 LVGKKITVKGQNGTCIDKEITYGDFAILRSRLKDAEDVYKSIFEKYGIPLHVIGGKSFY- 505
Query: 613 KSVEVMVMLDTLRSIDNPLNDYALVALLRSPMF--AFDEDDLARLALQNLPDQHKQNLYE 670
K +E++ +L+ L ++ NP N+Y SP+ F E D E
Sbjct: 506 KQLEILAILNALFAVQNPNNNYFFTRYFFSPLVLGTFKEYD------------------E 547
Query: 671 KMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYV 730
++N R + ++ D + + + +++ + ND Y + +
Sbjct: 548 IVKNRREDETLFETAKRIKFKSERDNAIKILEKYAQLKYYIRPTEILKGLINDLNYLEKL 607
Query: 731 GSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAV 790
E N+ L L A F++ L +++I KI + Q A +E +V
Sbjct: 608 AFFEDRESAILNVKKLLLEAQEFDQLADSFL-ELVKLIQKIGDTQEAEASIEDE-SSESV 665
Query: 791 TLMTIHKSKGLEFKYVFI 808
LMTIH SKGLEFK V +
Sbjct: 666 KLMTIHASKGLEFKIVIL 683
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 20/185 (10%)
Query: 33 IEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGV-------TIDQLFISTFTVKAAG 85
IE I N +SASAG+GKT+ I KIL ID++ ++TFT KAA
Sbjct: 4 IEKIKDINKNYFISASAGTGKTYT-ITHFYVKILSEYEKQNYPEIIDRIVVTTFTKKAAA 62
Query: 86 ELKERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISP 145
E+KER+ K+ E +K +L A I T+D+F Q+L+ + I P
Sbjct: 63 EMKERI-FKLVEPHNSPYWHKVKNYLPR-------AIISTIDSFCQRLLREENINANIDP 114
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
NF I+ D L+ VF L ++ D + +L N + +RK+ N +++ K+
Sbjct: 115 NFTIISDLKMSKLIDRAVFLTLKLTFQLYDFGKTNVRL--NISKHRKE--NIEKLLEKLK 170
Query: 206 DFSQA 210
D +
Sbjct: 171 DVKEG 175
>gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats.
Identities = 109/452 (24%), Positives = 202/452 (44%), Gaps = 53/452 (11%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
D + Y + + NA +F D+ +++ + N + + Y +K+ +MVDEYQD N Q
Sbjct: 171 DVYEMYQKRLKENNALDFDDLIFKTVELFKNNPGVLEFYQNKFKYIMVDEYQDTNGAQYE 230
Query: 425 MLELL-SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+++LL S +N +VGD Q IY++R AD Q DF++ K+I L++N+RS+
Sbjct: 231 LVKLLASKYKNICVVGDDDQCIYQWRGADI----QNILDFEKDYPGAKVIKLEQNYRSKG 286
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+L A N V + + K+ + E I + + D
Sbjct: 287 NILSAANVVIVN------------------NANRKSKVLRTEQEPGNKIKIYRAYADSD- 327
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLV 603
E V+K+I+ + N+E + D +L + ++ ++F G+P
Sbjct: 328 ------------EGDFVSKQILDIKNKEDKNYNDFAILYRTNAQSRIFEESFRRKGVPYK 375
Query: 604 TDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQ 663
GG + Y + E+ +L L+ I NP +D ++ ++ P + + +A+ +Q
Sbjct: 376 IVGGTRFYDRK-EIKDVLAYLKVIVNPQDDISIRRIINVPKRSIGDATVAK--VQEFASS 432
Query: 664 HKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYND 723
+ +L++ + R+ + +T + ++ F ++ E S + LI I D
Sbjct: 433 FEFDLWDALAEVRS-----IPTLTSRNVSTIEPFVALMENFMELSETVPVSVLIESILKD 487
Query: 724 KFYYDYVGSLPKSE--QRQANLYALALRADNFEKTGF-KGLSRFIRMIDKILENQNDLAD 780
Y + + E R NL L A +FEK K LS ++ + + +
Sbjct: 488 TGYLKQLQESNEIEDKSRIENLKELVSDAADFEKNNEDKSLSAYLERVSLVQDTD----- 542
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNID 812
++ +AV LMTIH +KGLEF VF++ ++
Sbjct: 543 -KIEEEDDAVVLMTIHSAKGLEFPVVFMVGME 573
>gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
Length = 738
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 125/523 (23%), Positives = 224/523 (42%), Gaps = 96/523 (18%)
Query: 376 QENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNG-RN 434
Q A +F D+ +Q+ ++ + Y ++Y VMVDE+QD N Q ++++LS RN
Sbjct: 182 QNKALDFDDLLLKVVQLFKQYPEVLAGYQERYLHVMVDEFQDTNLVQYELVKMLSAKYRN 241
Query: 435 RFMVGDIKQSIYRFRQADPQ-IFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVF 493
+VGD QSIY +R AD + +FN F+ K++LL++N+RS +L+A + V
Sbjct: 242 ICVVGDPDQSIYSWRSADLRNVFN-----FETDNPGAKVVLLEQNYRSTKNILEAASCVI 296
Query: 494 THLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
P + + + T+++ Q +AV + N+
Sbjct: 297 A-----------------------------PNSGRKPISLWTENESGQPIAVVETFNEQE 327
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + V EI +L EK DI +L + ++ + + F YG+P G + Y +
Sbjct: 328 --EAQFVVSEIEKLTRYEKFSPGDIAILYRTNAQSRALEEAFIRYGMPYRLVSGTRFYQR 385
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
EV ++ LR + NP + +L ++ P L+ LA + +LY+ +
Sbjct: 386 R-EVKDIVAYLRLLQNPQDSVSLQRVINIPTRGIGAKTLSDLA--QFAREQDISLYQSLI 442
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYY-DYVGS 732
N + + + + L +D F L + + Y +++ +
Sbjct: 443 NLSDENAPKPPIPSRGLKPLID--FGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFA 500
Query: 733 LPKSEQRQANLYALALRADNFEKT-GFKGLSRFIRMIDKILENQNDLADVEVALPKNAVT 791
E+R N+ L A +++ +GLS F+ + + +DL +E + +AVT
Sbjct: 501 SEDGEERWDNILELRTVAQQYQEILPPEGLSAFLESVALV----SDLDSLEEGV--SAVT 554
Query: 792 LMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPT 851
L+T+H++KGLE+ VF++ +EE +LP
Sbjct: 555 LITLHQAKGLEYPVVFMVG---------------------------------MEEGVLPH 581
Query: 852 VKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+ D A + E+ RL YV +TR++K+LYLV
Sbjct: 582 NRSFDDP------------AQMQEERRLCYVGVTRAKKRLYLV 612
>gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
Length = 738
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 127/522 (24%), Positives = 227/522 (43%), Gaps = 94/522 (18%)
Query: 376 QENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNG-RN 434
Q A +F D+ +Q+ +++ + Y ++Y VMVDE+QD N Q ++++LS +N
Sbjct: 182 QNKALDFDDLLLKVVQLFKQHPEVLARYQERYLHVMVDEFQDTNLVQYELVKMLSAKYKN 241
Query: 435 RFMVGDIKQSIYRFRQADPQ-IFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVF 493
+VGD QSIY +R AD + +FN F+ K+ILL++N+RS +L+A + V
Sbjct: 242 ICVVGDPDQSIYSWRSADLRNVFN-----FETDNPGAKVILLEQNYRSTKNILEAASCVI 296
Query: 494 THLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
P + + + T+++ Q +AV + N+
Sbjct: 297 A-----------------------------PNSGRKPISLWTENESGQPIAVVETFNEQE 327
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + V EI +L EK DI +L + ++ + + F YG+P G + Y +
Sbjct: 328 --EAQFVVSEIEKLTRYEKFSPGDIAILYRTNAQSRALEEAFIRYGMPYRLVSGTRFYQR 385
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
EV ++ LR + NP + +L ++ P L+ L + +LYE +
Sbjct: 386 R-EVKDIVAYLRLLQNPQDSVSLQRVINIPTRGIGAKTLSDLG--QFAREQDISLYESLV 442
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSL 733
N + + + + L D F S + L +L+ ++ Y +++ +
Sbjct: 443 NLSDENTPKPPIPSRGLKPLTD-FGLLLKSLVADARNLPLLNLLDRLLEGINYREFLFAS 501
Query: 734 PKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTL 792
E+R N+ L A +++ +GLS F+ + + +DL +E + +AVTL
Sbjct: 502 EDGEERWDNILELRTVAQQYQEIVPPEGLSVFLESVALV----SDLDSLEEGV--SAVTL 555
Query: 793 MTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTV 852
+T+H++KGLE+ VF++ +EE +LP
Sbjct: 556 ITLHQAKGLEYPVVFMVG---------------------------------MEEGVLPHS 582
Query: 853 KVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+ D A + E+ RL YV +TR+ K+LYLV
Sbjct: 583 RSFDDP------------AQMQEERRLCYVGVTRARKRLYLV 612
>gi|71065150|ref|YP_263877.1| putative ATP-dependent DNA helicase, UvrD/REP family [Psychrobacter
arcticus 273-4]
gi|71038135|gb|AAZ18443.1| putative ATP-dependent DNA helicase, UvrD/REP family [Psychrobacter
arcticus 273-4]
Length = 677
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 139/569 (24%), Positives = 243/569 (42%), Gaps = 122/569 (21%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRF- 436
NA +F D+ +IL EN +R + ++ ++VDEYQD N Q M++ L + RF
Sbjct: 183 NAVDFDDLIVLPTKILRENRELRDKWQNRIRYLLVDEYQDTNTAQYEMIKYLVGPQGRFT 242
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFT-- 494
+VGD QSIY +R A P+ +DF + K+++L++N+RS + +L + N+V T
Sbjct: 243 VVGDDDQSIYAWRGAKPENMGLLKEDFPKL----KIVMLEQNYRSTTRILTSANAVITNN 298
Query: 495 -HLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
HL ++ L+ D Q ++ I + ++ +DD
Sbjct: 299 EHLFEKK----LWSDKGQ---------------GEKIRIINCRN--------DDD----- 326
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + VAKEI+ ++E +L S + + +P GG+ + +
Sbjct: 327 --ESERVAKEIVTHKLRFGNEWEQYAVLYRSNFQARMLEAQLRQLQVPYKLSGGQSFFAR 384
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
S E+ ++ LR I NP +D A + ++ +P L +L L +H +L
Sbjct: 385 S-EIKDVMSYLRLILNPEDDSAFLRVINTPKRGMGPATLEKLGL--FSQEHSISLLASCT 441
Query: 674 NARNGQGQQVQLITEALSA--KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVG 731
+A G L ++A S + F E + RE ++ ++ ++ Y D+V
Sbjct: 442 HA----GLAHVLPSKAYSTLKEFGDFIEHYT--RELDQHPDPVPIVRQMIDETGYIDFVR 495
Query: 732 SLPKSEQRQAN-----------LYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLAD 780
S K+ Q++ N + +L RA+ E + R + ++D +LE Q + +
Sbjct: 496 SDSKTPQQEKNRIDNIDMLYTSIQSLINRAEEDEDRTIDTIIRKLVLLD-MLEQQQEEEN 554
Query: 781 VEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADM 840
N V LMT+H +KGLEF +V+I+
Sbjct: 555 T------NKVNLMTLHAAKGLEFDFVYIMG------------------------------ 578
Query: 841 KEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQE 900
LEE++LP ++ + T+ E+ RL+YV +TR+ ++L L +Q
Sbjct: 579 ---LEEEMLP-------------HRNSILSETVEEERRLMYVGITRARRELTLT-LATQR 621
Query: 901 KLGDQYDGKSENNHLPVADREHYLTFQDW 929
+ G Q SE+ L +H DW
Sbjct: 622 RAGGQMRVTSESRFLDELPEDHI----DW 646
>gi|93005402|ref|YP_579839.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
gi|92393080|gb|ABE74355.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
Length = 677
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 136/567 (23%), Positives = 241/567 (42%), Gaps = 118/567 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRF- 436
NA +F D+ +IL EN +R + ++ ++VDEYQD N Q M++ L + RF
Sbjct: 183 NAVDFDDLIVLPTKILRENRELRDKWQNRIRYLLVDEYQDTNTAQYEMIKYLVGPQGRFT 242
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFT-- 494
+VGD QSIY +R A P+ +DF + K+++L++N+RS + +L + N+V T
Sbjct: 243 VVGDDDQSIYAWRGAKPENMGLLKEDFPKL----KIVMLEQNYRSTTRILTSANAVITNN 298
Query: 495 -HLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
HL ++ L+ D Q ++ I + ++ +DD
Sbjct: 299 EHLFEKK----LWSDKGQ---------------GEKIRIINCRN--------DDD----- 326
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + VAKEI+ ++E +L S + + +P GG+ + +
Sbjct: 327 --ESERVAKEIVTHKLRFGNEWEQYAVLYRSNFQARMLEAQLRQLQVPYKLSGGQSFFAR 384
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
S E+ ++ LR I NP +D A + ++ +P L +L L +H +L
Sbjct: 385 S-EIKDVMSYLRLILNPEDDSAFLRVINTPKRGMGPATLEKLGL--FSQEHSISLLASCT 441
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSL 733
+A G + + + + F E + RE ++ ++ ++ Y D+V S
Sbjct: 442 HA--GLAHVLPSKSYSTLKEFGDFIEHYT--RELDQHPDPVPIVRQMIDETGYIDFVRSD 497
Query: 734 PKSEQRQAN-----------LYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE 782
K+ Q++ N + +L RA+ E + R + ++D +LE Q + +
Sbjct: 498 SKTPQQEKNRIDNIDMLYTSIQSLINRAEEDEDRTIDTIIRKLVLLD-MLEQQQEEENT- 555
Query: 783 VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKE 842
N V LMT+H +KGLEF +V+I+
Sbjct: 556 -----NKVNLMTLHAAKGLEFDFVYIMG-------------------------------- 578
Query: 843 ELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKL 902
LEE++LP ++ + T+ E+ RL+YV +TR+ ++L L +Q +
Sbjct: 579 -LEEEMLP-------------HRNSILSETVEEERRLMYVGITRARRELTLT-LATQRRA 623
Query: 903 GDQYDGKSENNHLPVADREHYLTFQDW 929
G Q SE+ L +H DW
Sbjct: 624 GGQMRVTSESRFLDELPEDHI----DW 646
>gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
Length = 738
Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 125/523 (23%), Positives = 224/523 (42%), Gaps = 96/523 (18%)
Query: 376 QENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNG-RN 434
Q A +F D+ +Q+ +++ + Y ++Y VMVDE+QD N Q ++++LS RN
Sbjct: 182 QNKALDFDDLLLKVVQLFKQHPEVLAGYQERYLHVMVDEFQDTNLVQYELVKMLSAKYRN 241
Query: 435 RFMVGDIKQSIYRFRQADPQ-IFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVF 493
+VGD QSIY +R AD + +FN F+ K+ILL++N+RS +L+A + V
Sbjct: 242 ICVVGDPDQSIYSWRSADLRNVFN-----FETDNPGAKVILLEQNYRSTKNILEAASCVI 296
Query: 494 THLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
P + + + T+++ Q +AV + N+
Sbjct: 297 A-----------------------------PNSGRKPISLWTENESGQPIAVVETFNEQE 327
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + V EI +L EK +I +L + ++ + + F YG+P G + Y +
Sbjct: 328 --EAQFVVSEIEKLTRYEKFSPGNIAILYRTNAQSRALEEAFIRYGMPYRLVSGTRFYQR 385
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
EV ++ LR + NP + +L ++ P L+ LA + +LY+ +
Sbjct: 386 R-EVKDIVAYLRLLQNPQDSVSLQRVINIPTRGIGAKTLSDLA--QFAREQDISLYQSLI 442
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYY-DYVGS 732
N + + + + L D F L + + Y +++ +
Sbjct: 443 NLSDENAPKPPIPSRGLKPLTD--FGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFA 500
Query: 733 LPKSEQRQANLYALALRADNFEKT-GFKGLSRFIRMIDKILENQNDLADVEVALPKNAVT 791
E+R N+ L A +++ +GLS F+ + + +DL +E + +AVT
Sbjct: 501 SEDGEERWDNILELRTVAQQYQEILPPEGLSAFLESVALV----SDLDSLEEGV--SAVT 554
Query: 792 LMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPT 851
L+T+H++KGLE+ VF++ +EE +LP
Sbjct: 555 LITLHQAKGLEYPVVFMVG---------------------------------MEEGVLPH 581
Query: 852 VKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+ D A + E+ RL YV +TR++K+LYLV
Sbjct: 582 NRSFDDP------------AQMQEERRLCYVGVTRAKKRLYLV 612
>gi|146318385|ref|YP_001198097.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|146320577|ref|YP_001200288.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|145689191|gb|ABP89697.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145691383|gb|ABP91888.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33]
Length = 759
Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 117/459 (25%), Positives = 200/459 (43%), Gaps = 71/459 (15%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + Q A +F D+ +++ ++N + Y K+ + VDEYQD NH Q ++++LL
Sbjct: 175 YQKELRQSEAVDFDDLIMLTLRLFDQNPEVLTYYQQKFQYIHVDEYQDTNHAQYQLVKLL 234
Query: 430 -SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
S +N +VGD QSIY +R AD Q DF++ K++LL+EN+RS VL A
Sbjct: 235 ASRFKNICVVGDADQSIYGWRGAD----MQNILDFEKDYPESKVVLLEENYRSTKNVLQA 290
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N V + + ++ + QN LI + + D A+
Sbjct: 291 ANEVIENNRNRRPKKL------------------WTQNAQGDLITYYRARDENDEAI--- 329
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
VA +I +LH E K ++D T+L + ++ I + IP GG
Sbjct: 330 ----------FVAGQIDQLHREGKA-YKDFTVLYRTNAQSRTIEEALLKSNIPYTMVGGT 378
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ ++ L I NP ++ + ++ P + + L++ H +L
Sbjct: 379 KFYSRK-EIRDVISYLNIIANPSDNISYERIVNEPKRGVGPGTVDK--LRDFATSHSMSL 435
Query: 669 YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDL-----IWKIYND 723
E ++ +++ A F+ L+ ++L N L +L + + N
Sbjct: 436 LEASQDI---------MLSPVKGKAAQAVFD--LANLLYNLRNQLDNLTVTQVVEAVLNQ 484
Query: 724 KFYYDYVGSLPKSE--QRQANLYALALRADNF-------EKTGFKGLSRFIRMIDKILEN 774
Y D + + E R N+ NF E+TG L+RF ++D L
Sbjct: 485 TGYIDALAAQNTLEANARIENIQEFLSVTKNFDEKDVEEEETGLDKLTRF--LLDLALIA 542
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
D D E + VTLMT+H +KGLEF VF++ +++
Sbjct: 543 DTDDGDTE----SSEVTLMTLHAAKGLEFPVVFLIGMEE 577
>gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159]
gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159]
Length = 733
Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 118/468 (25%), Positives = 202/468 (43%), Gaps = 82/468 (17%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y Q A +F D+ +++ ++N + Y +Y + VDEYQD NH Q ++++
Sbjct: 148 KAYQSELRQSEAMDFDDLIMLTLRLFDQNPDVLAYYQQRYQYIHVDEYQDTNHAQYQLVK 207
Query: 428 LL-SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL S +N +VGD QSIY +R AD Q DF++ K++LL+EN+RS ++L
Sbjct: 208 LLASRFKNICVVGDADQSIYGWRGAD----MQNILDFEKDYPEAKVVLLEENYRSSKKIL 263
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE--TQVLIYDTKDQQNQDLA 544
A N V + + K + QN+ Q++ Y D+Q+
Sbjct: 264 QAANDVIKNNRNR------------------RDKKLWTQNDDGEQIVYYRADDEQD---- 301
Query: 545 VEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVT 604
E VA I + E F+D +L + ++ I + IP
Sbjct: 302 -----------EAVFVASTIANIVREMGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTM 350
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
GG + Y + E+ ++ L I N ++ + ++ P L + ++N +
Sbjct: 351 VGGTKFYSRK-EIRDIIAYLNVIANTADNISFERIVNEPKRGVGPGTLEK--IRNFANLQ 407
Query: 665 KQNLYEKMENA--RNGQGQQVQLITEA------LSAKLDAFFETFLSWREFSLLNSLYDL 716
+L E EN + +G+ VQ + E L +KLD + S+ ++
Sbjct: 408 GMSLLEASENIMLSSIKGKAVQAVYELANMIIDLRSKLDHY--------------SITEV 453
Query: 717 IWKIYNDKFYYDY--VGSLPKSEQRQANLYALALRADNFE---------KTGFKGLSRFI 765
+ + + Y + + +S+ R N+ NF+ +TG + LSRF+
Sbjct: 454 VEAVLDSSGYLEVLEIQKTLESQTRIENIEEFLSVTKNFDDTTDDVPENETGLERLSRFL 513
Query: 766 RMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
D L D A+ E A VTLMT+H +KGLEF VF++ +++
Sbjct: 514 N--DLALIADTDEAESESA----EVTLMTLHAAKGLEFPIVFLIGLEE 555
>gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
NBC37-1]
gi|151423841|dbj|BAF71344.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
NBC37-1]
Length = 688
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 124/484 (25%), Positives = 220/484 (45%), Gaps = 67/484 (13%)
Query: 345 IFKYQDQSLPLLQVLQSFTL-DFSK-----QYLQAKMQENAF-EFSDIAHFAIQILEEND 397
I KY++ L V+Q L D+ K + QA ++EN +F D+ +IL+EN+
Sbjct: 142 ISKYKNSLLTPEVVIQKAELPDYKKVARIYEQYQANIEENNLVDFDDLLMLTYRILDENE 201
Query: 398 AIRQLYIDKYHEVMVDEYQDNNHTQERMLE-LLSNGRNRFMVGDIKQSIYRFRQADPQIF 456
+R+ ++Y +MVDEYQD N Q R+LE L S N +VGD QSIY +R A+
Sbjct: 202 ELRRETSNRYKYIMVDEYQDTNELQFRLLEHLCSEHNNLCVVGDDDQSIYGWRGANI--- 258
Query: 457 NQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGS 516
+ +F +H E+ K + L+ N+RS +L A N++ H +G+ L
Sbjct: 259 -RNILEFADHFENTKTVKLETNYRSTEPILKAANALIEH-NSTRLGKKL----------- 305
Query: 517 SAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFE 576
+ + ++ + + D+ E K +A EI L + V +
Sbjct: 306 ----VSHKGEGKEIKLLHSLDESM---------------EAKAIAHEIHEL-IDSGVDPD 345
Query: 577 DITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYAL 636
+I +L + + + F G+ GG + Y ++ E+ ++ R + NP +D++L
Sbjct: 346 EIAVLYRINALSRSLEEGFTKEGLAFKLIGGMRFYERA-EIKDIISYFRVLTNPHDDFSL 404
Query: 637 VALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDA 696
+ ++ P + + + LQ +LYE +E + NG+ V +++ +SA L
Sbjct: 405 IRIINKPKRGIGKASIEK--LQKAAFDSHLSLYEYIEQSSNGKLPNV--VSKKVSAALAN 460
Query: 697 FFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKT 756
E RE + SL + I D+ ++ R N+
Sbjct: 461 LLEDIEVLRE-EMQTSLGNFITLFEERIKLKDHYAAMVDGFDRILNI------------D 507
Query: 757 GFKGLSR--FIRMIDKILE---NQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811
F G R I+ D LE N L + + +NA+T+M+IH +KGLEF+++F++ +
Sbjct: 508 EFYGYFRDAVIKNPDLTLEEFLNDISLQSDQDQIEENAITIMSIHAAKGLEFEHLFVIGL 567
Query: 812 DKKF 815
+++F
Sbjct: 568 EEEF 571
>gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
Length = 1196
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 151/578 (26%), Positives = 240/578 (41%), Gaps = 87/578 (15%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y K A +F D+ A +L + A+R +Y ++VDEYQD N Q+ + EL
Sbjct: 329 RYAATKRAARAVDFDDLLVRARDLLRHDGALRAELRARYRALLVDEYQDVNGVQQELFEL 388
Query: 429 LSN-----GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
LS G VGD+KQSIYRFR AD +F + + + G+++ L +N RS
Sbjct: 389 LSGPGGPAGPLLVAVGDLKQSIYRFRGADVAVFARLIRRLEAG--DGRVLHLSDNHRSAP 446
Query: 484 EVLDATNSVFTHLMDEAVG------EILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
V++ N VF M G EI + D +LV + P L+ D +D
Sbjct: 447 AVVELVNEVFARCMRPPDGAPPRDDEIRFSDADRLVP-----RRPEGARPACELLEDHED 501
Query: 538 ------QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNE--EKVQFEDITLLVSSRTRND 589
++ + A+ + G + +E E + + D+ +L T+
Sbjct: 502 GNAAERRRREAGAIARRIRAVVSGAAGVAVRERGEGGAERVRRPRLSDVAILFRRLTQIG 561
Query: 590 GILQTFDDYGIP--LVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
+ GIP L GG + ++ EV + + L ++ +P + A+LRSPM
Sbjct: 562 EYERALRAAGIPYRLARGGG---FYQAPEVRDLGELLATLADPSDAIGWAAVLRSPMCGV 618
Query: 648 DEDD---LARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS-----------AK 693
+ LAR L L + L ++ A G+G L EA A+
Sbjct: 619 SDATLFLLARAGLARLARVSPERLAAEVARAL-GEGGAGALAPEAAERAVASVPAEDWAR 677
Query: 694 LDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSL---------PKSEQRQANLY 744
L + +WRE L++L D ++ D V L P E+R N+
Sbjct: 678 LTRLLD---AWRE---LHALRD---RLAPDALLTRAVERLDLDAVLLAGPDGERRAVNVA 728
Query: 745 ALALRADNFEKTGFKG--LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLE 802
A F G L+R +R + + A+VE +AV L+T+H++KGLE
Sbjct: 729 KAIALAARFGSDGGTAAELARHLRAQASRPPREPE-AEVEAG---DAVALLTVHQAKGLE 784
Query: 803 FKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKY--IADMKEELEEKLLPTVKVSMDTLP 860
+ VF+ ++ + D L+ + ++Y AD EE T
Sbjct: 785 WPVVFVPDLGAR-PRSDARRALLDAEGRLCAMRYDPAADRFEE--------------TAS 829
Query: 861 YQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGS 898
+ + R A +E RLLYVAMTR+ +L L G+ S
Sbjct: 830 VRDARAHERRAAAAESRRLLYVAMTRARDRLVLSGEAS 867
>gi|72383505|ref|YP_292860.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus str.
NATL2A]
gi|72003355|gb|AAZ59157.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus str.
NATL2A]
Length = 805
Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats.
Identities = 132/543 (24%), Positives = 233/543 (42%), Gaps = 108/543 (19%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQ-ERMLEL 428
Y +A NA +F D+ +Q+L++N+ IR + ++ V+VDEYQD N TQ E + +L
Sbjct: 216 YRKALAANNALDFDDLLLIPVQLLQQNEKIRTYWHSRFKHVLVDEYQDTNWTQYELIKQL 275
Query: 429 LSNG-----------RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGK----LI 473
++NG R+ F+VGD QSIY FR AD +I +DF + K L+
Sbjct: 276 VTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKSLDNKYDSTLV 335
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L+EN+RS S +L+A NS+ ++ E + ++L
Sbjct: 336 KLEENYRSTSTILEAANSLISN-NKERIDKVL---------------------------- 366
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQ 593
+ + + + ++I+ E + I+ N E + + D+ +L + ++ I
Sbjct: 367 RATRGEGEPIRLTRCDDEIAEAEAVIHRLRILDASNPE-LNWGDMAILYRTNAQSRAIED 425
Query: 594 TFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLA 653
+ + IP + GG + Y + E+ +L LR + NP + +L+ +L P + +
Sbjct: 426 SLVRWSIPYIVVGGLRFYDRR-EIKDLLAYLRLLINPSDSVSLLRVLNVPKRGIGKTTVQ 484
Query: 654 RLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
RL+ + Q K L+E + + + V+ + + L F E + L +S
Sbjct: 485 RLS--DAASQLKIPLWEVVNDP-----EAVRSLAGRSAKGLLIFSELINELQSHLLSSSP 537
Query: 714 YDLIWKIYNDKFYYDYV--GSLPKSEQRQANLYALALRADNF-EKTGFKGLSRFIRMIDK 770
+L+ + Y + ++E+R+ NL L A + E++ L F+
Sbjct: 538 AELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAALQYQEESEDANLEGFLST--A 595
Query: 771 ILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQN 830
L + D D N VTLMT+H SKGLEF V ++
Sbjct: 596 ALSSDADNKDT----ASNRVTLMTLHSSKGLEFPVVCLVG-------------------- 631
Query: 831 GVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKK 890
+E+ L P+ + D ++L E+ RL YV +TR+++K
Sbjct: 632 -------------MEQGLFPSYRSLDDP------------SSLEEERRLCYVGLTRAKEK 666
Query: 891 LYL 893
L+L
Sbjct: 667 LFL 669
>gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000]
gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent
exodnase (exonuclease v) beta subunit (contains helicase
and exonuclease domains) [Ralstonia solanacearum]
Length = 1177
Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats.
Identities = 151/582 (25%), Positives = 248/582 (42%), Gaps = 91/582 (15%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEEND--AIRQLYID-KYHEVMVDEYQDNNHTQER 424
++Y K Q A +F+D+ A +++ + D A Q+ +D +Y +++DE+QD N Q R
Sbjct: 370 ERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDTNPMQWR 429
Query: 425 MLELLSNGRNR-------FMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKE 477
+L+ G F+VGD KQSIYRFR+AD ++F + +D ++
Sbjct: 430 ILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLF-EAARDMLVAAFDATVLRTNR 488
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEI-LYDDTHQLVAGSSAQK-----IPYPQ----NE 527
R+ VL+ N+VF L+ A G+ +Y + V + +P P+ +E
Sbjct: 489 TRRNAPAVLEWVNAVF--LLARARGDYPIYAEQSTAVDAPVGRALLLPLVPVPEAAQADE 546
Query: 528 TQVLIYDTKDQQNQ-DLAVEDDSNQISLGEVKLVAKEIIRLHNEEK-VQFEDITLLVSSR 585
T T+ ++ D D+ Q++ L A E +R + E+ V++ D LLV +
Sbjct: 547 TAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGAERPVRWSDFQLLVRRK 606
Query: 586 TRNDGILQTFDDYGIPLVTD--GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP 643
+ D G+P ++ GG L+++++ +LD L + P D L +LRSP
Sbjct: 607 RYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMT---PQADLPLAHVLRSP 663
Query: 644 MFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLS 703
+FA +DDL L A+ G+G E L+A D
Sbjct: 664 IFAVTDDDLIAL-------------------AQAGEGASAPTWWERLAALADRPHAA-AQ 703
Query: 704 WREFSLLNS----------LYDLIWKI-YNDKFYYDYVGSLPKS--EQRQANLYALALRA 750
WR L S ++DL+ I Y + Y +P++ EQ ANL A A
Sbjct: 704 WRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLA 763
Query: 751 DNFEKTGFKGLSRFIRMIDKILEN----------QNDLADVEVALPK-------NAVTLM 793
+ + + L +F+ + I + Q D A+ A+ +AV ++
Sbjct: 764 LDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASEGLDAVQIL 823
Query: 794 TIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVK 853
T+H SKGLE +V +L+ + D LI + + + E
Sbjct: 824 TVHASKGLEAPFVVLLDSHHSDTRADTVGILIDWPPGAEAPAHFSAFGKAAERGR----- 878
Query: 854 VSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVG 895
+ D L Q E LA E LLYVAMTR+ + L + G
Sbjct: 879 -ARDPLFAQ----EATLAE-RENWNLLYVAMTRARQALIVSG 914
>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
PCA]
gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
PCA]
Length = 739
Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats.
Identities = 132/524 (25%), Positives = 220/524 (41%), Gaps = 107/524 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLS-NGRNRF 436
NA +F D+ +++ EE+ + + Y D++ ++VDEYQD N Q R++ LL+ RN
Sbjct: 179 NALDFGDLIMLTVRLFEEHPVVLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLC 238
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
+VGD QSIYR+R AD + DF++ I L++N+RS +L A +V
Sbjct: 239 VVGDDDQSIYRWRGADI----RNILDFEKDFPGVTTIKLEQNYRSTRNILAAAGAVVAR- 293
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
G A+ + ++Y + LA E D E
Sbjct: 294 ----------------NRGRKAKTLWSENPPGDPIVY-------RRLADERD-------E 323
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ V +EI R + D+ + + ++ + GIP GG + Y + +E
Sbjct: 324 ARFVCREIER-YVRRGGDLRDVAVFYRTNAQSRVVEDALVADGIPYHMVGGMRFY-ERME 381
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V +L LR + NP ++ +L ++ P + +++ L + + + + A
Sbjct: 382 VKDVLAYLRVLANPADEVSLKRIINVPARGIGPGTVDKIS--ELAVRRGITVLDALGEAA 439
Query: 677 NGQGQQVQLITEALSAKLDAF---FETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSL 733
G L++ A K+ AF E F + R+ L +L +I + Y D +
Sbjct: 440 TG-----GLLSSAPRGKVAAFAAVMERFFALRD---QLPLAELTTRIIEESGYADRLRQE 491
Query: 734 PKSE--QRQANLYALALRADNFEKTG-FKGLSRFIRMIDKILENQNDLADVEVA-LPKNA 789
E R ANL L + FE+T +GL+ F LE ++D+E + + +
Sbjct: 492 RTDEAADRLANLQELVAAMEEFERTSDERGLAPF-------LEQVALVSDLERSGTGRES 544
Query: 790 VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL 849
TLMT+H +KGLEF VF++ +EEKL
Sbjct: 545 ATLMTLHAAKGLEFPMVFMIG---------------------------------MEEKLF 571
Query: 850 PTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
P V+ L+ E + E+ RL YV MTR+ ++L L
Sbjct: 572 PHVR--------SLDDPE----AMEEERRLCYVGMTRARERLCL 603
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 30 PEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL-RGVTIDQLFISTFTVKAAGELK 88
P Q A+ +LV A AGSGKT V++ RI I RGV Q+ TFT KAAGE++
Sbjct: 9 PPQRAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFTNKAAGEMR 68
Query: 89 ERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFR 148
ER+EK L+G + I T + +++ + + LG +F
Sbjct: 69 ERVEK---------------------LVGGEVPLIATFHSTCARILRREIHHLGYDSSFA 107
Query: 149 ILQDKSEQDLLK 160
I DK LLK
Sbjct: 108 IYDDKDSGKLLK 119
>gi|156451646|ref|ZP_02058021.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
gi|156189476|gb|EDO21670.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
Length = 1117
Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 206/912 (22%), Positives = 356/912 (39%), Gaps = 126/912 (13%)
Query: 35 AIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKER---- 90
AI ++LV A AGSGKT +M R+ + G + TFT AA EL ER
Sbjct: 17 AINAHDRSLLVEAGAGSGKTALMAGRVAMMLASGTAPGSIAAVTFTELAASELLERVGEV 76
Query: 91 ----LEKKITEQLRLTNDTAL----KQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLG 142
+E ++ E++R+ L +Q L E L T+ F Q+LV Y
Sbjct: 77 TGRLIEGQVPEEMRIALPNGLSVSQRQLLVEAAEHLDEMACTTIHGFCQRLVKPYPVEAD 136
Query: 143 ISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY 202
I P R++ D++E D + D+ D + +G + ++ + +
Sbjct: 137 IDPGARVV-DEAEADGIFQDLRDGWLRECLSGGGGLVAEMVLADPDAALAAIDRVAGCLR 195
Query: 203 KIYDFSQATDNPQRWLLENFLKGANTYKDF---SAIPEQEVKDFLNTLQETALALRDVTD 259
+ A P L+ F + DF S + E E + + A L D
Sbjct: 196 EGRTVGTAPAEPLPGLVRAFGASVRKFGDFQRTSGVSEAETVAGVTAFEVMAARLPDAGA 255
Query: 260 LEDYKQVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDV 319
++D + + P A + + D+ + R G K A D A + V
Sbjct: 256 VDDSELIAILTAPAEA-----NLCKADGDFAKY------RGGKKKWA-DAAKM------V 297
Query: 320 TVAGVKYPVFRSLHSRLRGLKHLETIFKYQ-DQSLPLLQVLQSFTLDFSKQYLQAKMQEN 378
+ + ++ RL ++ ET + + + + LL L ++Y K
Sbjct: 298 GLPKAEAERLQACAERLH-VECCETWARLKANAASELLARLVGAVGAVLERYQARKRAGA 356
Query: 379 AFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERML-----ELLSNGR 433
+F D+ A ++L E++ +RQ +Y V+VDE+QD + Q +L EL +
Sbjct: 357 LLDFDDLIAAAAKLLREHEIVRQALGRRYRHVLVDEFQDTDPLQTEILWRLCGELPAGAT 416
Query: 434 N-----------RFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQ 482
+ F+VGD KQ+IYRFR AD + + ++ G ++ + NFRS
Sbjct: 417 DVWAQRVLRPGALFLVGDPKQAIYRFRGADVSTY-VRARNCILAQSPGDVLSISTNFRSC 475
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQD 542
+L + F +++ VG+ G +A +P + I D
Sbjct: 476 RSILAYVDQRFRNIL-SGVGQ----------PGFTALDAYHPDHGRGPCIAALDVPAGAD 524
Query: 543 LAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFE----------DITLLVSSRTRNDGIL 592
A + D+ + E + VA RL ++ V + DI LL S +
Sbjct: 525 GA-KQDAQALRDVEAEAVADLCARLIGQQLVTCKRDGTRTLRAGDIALLAPSGSDLWRYE 583
Query: 593 QTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDL 652
+ + GIP+ T G + + + E+ ++ R + +P + AL ALLR P +++L
Sbjct: 584 EALESRGIPVSTQAG-KGFFRRQEIHDLIALARVLADPRDTLALGALLRGPAIGLTDEEL 642
Query: 653 ARLALQNLPDQHKQNLYEKMENARNGQGQQVQL------ITEALSAKLDAFFETFLSWRE 706
L + LP + E + R QV + + + +L + L
Sbjct: 643 LDL-VDGLPRDPEHP--ESIPKLR----LQVDVAHISHPVARPVFERLQVLAKRALGTTP 695
Query: 707 FSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIR 766
+L+ D + + YD +E+ AN + L + +GL F
Sbjct: 696 HDILSQAVDALMLRPVVRHRYD-----GHAERALAN---IDLFLEMSRPYSVRGLRAFAG 747
Query: 767 MIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
++ E + + + AV+L T+H SKGLE+ V +N + + +T LI
Sbjct: 748 VMKASWEGRTRAVEGRPDSQEAAVSLFTMHASKGLEWPVVIPINTSTR--TKAVTGALID 805
Query: 827 SRQNGV-----GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLY 881
N + G++ + E LE + KRE+ +E++RL Y
Sbjct: 806 RTSNCLYCPVFGVRPVG-YGEALENE-----------------KREVG----NERVRLWY 843
Query: 882 VAMTRSEKKLYL 893
VA TR+ + L L
Sbjct: 844 VAATRARETLVL 855
>gi|154174762|ref|YP_001408534.1| helicase, UvrD/Rep family [Campylobacter curvus 525.92]
gi|112803087|gb|EAU00431.1| helicase, UvrD/Rep family [Campylobacter curvus 525.92]
Length = 689
Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 116/458 (25%), Positives = 208/458 (45%), Gaps = 69/458 (15%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
D ++YL+A N +F D+ +IL+EN+ + + ++Y +MVDEYQD N Q +
Sbjct: 177 DKYEEYLRAN---NLVDFDDLLVLTYKILDENEDLAREISNRYRYIMVDEYQDTNDLQYK 233
Query: 425 ML-ELLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+L +L N +VGD QSIY +R A + +F++ ++ K+I L++N+RS +
Sbjct: 234 LLRKLCLTHENICVVGDDDQSIYGWRGAKIE----NILNFKDQFKNTKIIRLEQNYRSTT 289
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+L A N + H +N + K +
Sbjct: 290 PILKAANELIDH----------------------------NRNRLGKKLLSVKGEGEGVN 321
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVS----SRTRNDGILQTFDDYG 599
+E + G++ KE++ E+ Q +DI +L SR+ DG+ +
Sbjct: 322 LLESLDESVEAGKIAKSIKELL----EKGAQAKDIAILYRINALSRSLEDGLTKE----R 373
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
IP GG + Y ++ EV ++ LR I N +D++L ++ P + L +L +
Sbjct: 374 IPYKMVGGVKFYERA-EVKDVISYLRLIINQNDDFSLKRIINRPKRGLGKVSLDKL--EK 430
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLD-AFFETFLSWREFSLLNSLYDLIW 718
+ + K ++++ + N + EA S K+ A E +E NSLY+LI
Sbjct: 431 MAYEGKTSMFDAILNIDDKD--------EAFSKKIKTALVEFTQILKELQETNSLYELID 482
Query: 719 KIYNDKFYYDYVGSLPKSEQRQANLYAL-ALRADNFEKTGFKGLSRFIRMIDKILENQND 777
K+ Y SLP +R AN+ A+ D ++ L F+ + + E N
Sbjct: 483 KMEAKFGIKKYYESLPDGNERAANIDEFYAMLKDQIKQNPSFELEEFLNELALVSEQDN- 541
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKF 815
+ A+++M++H SKGLEF+Y+F++ +++ F
Sbjct: 542 -------ISSEAISIMSVHASKGLEFEYLFVIGLEEGF 572
>gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
Length = 1149
Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats.
Identities = 140/554 (25%), Positives = 236/554 (42%), Gaps = 59/554 (10%)
Query: 374 KMQENAFEFSDIAHFAIQILEENDAIRQLYI-DKYHEVMVDEYQDNNHTQERML-----E 427
K Q N +F+D+ + L+ + I +I +Y ++VDE+QD + Q ++ E
Sbjct: 344 KRQANGVDFNDLIQLTREFLQSHQDIVARHIRPRYQYILVDEFQDTDPAQFEIITAIIGE 403
Query: 428 LLSNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEH---PEHGKLILLKENFRSQSE 484
L R+ F+VGD KQSIY FR AD +FK+ Q G LI L +FRS E
Sbjct: 404 LQPGTRSLFIVGDPKQSIYLFRNADV----TRFKEAQTRILSDCKGNLINLDTSFRSCRE 459
Query: 485 VLDATNSVFTHLM--DEAVGEILYD-----DTHQLVAGSSAQKIP--YPQNETQVLIYDT 535
V+ N +F+ + E E Y+ D + GS +P P+ + +
Sbjct: 460 VIGCVNYLFSRIFASTEKPWEFGYEPIQVCDDRKASPGSITVLLPGKAPKGSER-----S 514
Query: 536 KDQQNQDLAVEDDSNQI-SLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQT 594
+ ++ + V D +QI S G ++ ++ + + DI +L+ RT
Sbjct: 515 ETKEIEAGMVADLVHQIVSCGSFQITDRDGVM----RPAGYGDIAILIERRTHLTRYTTA 570
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
P GG Y + E+ + + L + P + AL +LRSP F+F + +
Sbjct: 571 LSRKETPFYVHGGIGFYSRQ-EIYDIYNILSFLLRPYDSAALFGVLRSPYFSFSDPLIYH 629
Query: 655 LALQNLPDQHKQ-NLYEKMENARN---GQGQQVQLITEALSAKLDAFFETFL-------S 703
+ N+P ++ +LYEK+ + +++ E LS A E L S
Sbjct: 630 IL--NVPGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCS-PADQELILRAARLLES 686
Query: 704 WREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSR 763
WR + + L+ +I + G+L + EQ+ ANL L + G+ L
Sbjct: 687 WRNLAGREPVVPLVNRIIRESGILTIYGALEQGEQQAANLTKLLGIIRGRTEGGYYSLFD 746
Query: 764 FIR-MIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTS 822
++ M+ I + + + L K +V +MT+H +KGLEF V + ++ S +
Sbjct: 747 LVQDMMISIADEEREGEAALDTLSKTSVNIMTVHAAKGLEFPVVILPDMGS--SREGKLG 804
Query: 823 PLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYV 882
P++ + I D ++ + K P L ++E A E+ RL YV
Sbjct: 805 PILSGDHPHLYGVRIPDPDQDFDIKETPVYTA------LSLIQKEKESA---ERKRLFYV 855
Query: 883 AMTRSEKKLYLVGK 896
TR+ L L GK
Sbjct: 856 GATRARDHLVLCGK 869
Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL-RGVTIDQLFISTFTVKAAGEL 87
TP Q+EAI +++V+A AG+GKTFV++E+ ++ + +G I + TFT KAA E+
Sbjct: 4 TPRQLEAISRHDVSMVVTAGAGTGKTFVLVEKYLNLVQDQGYRIRDVLALTFTDKAAAEM 63
Query: 88 KERLEKKITEQLRLTNDTALKQFLSEQLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNF 147
KER+ K I E+L+ D + + E+L+ A + T +F +++ ++ G+ P F
Sbjct: 64 KERVRKTIAERLKDDPDNQVWKDAHEELV---IAPVMTFHSFCAQILREFAIEAGLDPGF 120
Query: 148 RILQDKSEQDLLKNDVFDDL 167
IL D+ + ++ + F+ L
Sbjct: 121 VIL-DEGQALAVEREAFETL 139
>gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
Length = 805
Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats.
Identities = 132/543 (24%), Positives = 234/543 (43%), Gaps = 108/543 (19%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQ-ERMLEL 428
Y +A NA +F D+ +Q+L++N+ IR + ++ V+VDEYQD N TQ E + +L
Sbjct: 216 YRKALAANNALDFDDLLLIPVQLLQQNEKIRTYWHSRFKHVLVDEYQDTNWTQYELIKQL 275
Query: 429 LSNG-----------RNRFMVGDIKQSIYRFRQADPQI---FNQKF-KDFQEHPEHGKLI 473
++NG R+ F+VGD QSIY FR AD +I F + F K ++ L+
Sbjct: 276 VTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKSLDNTYDSTLV 335
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L+EN+RS S +L+A NS+ ++ E + ++L
Sbjct: 336 KLEENYRSTSTILEAANSLISN-NKERIDKVL---------------------------- 366
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQ 593
+ + + + ++I+ E + I+ N E + + D+ +L + ++ I
Sbjct: 367 RATRGEGEPIRLTRCDDEIAEAEAVIHRLRILDASNPE-LNWGDMAILYRTNAQSRAIED 425
Query: 594 TFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLA 653
+ + IP + GG + Y + E+ +L LR + NP + +L+ +L P + +
Sbjct: 426 SLVRWSIPYIVVGGLRFYDRR-EIKDLLAYLRLLINPSDSVSLLRVLNVPKRGIGKTTVQ 484
Query: 654 RLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
RL+ + Q K L+E + + + V+ + + L F E + L +S
Sbjct: 485 RLS--DAASQLKIPLWEVVNDP-----EAVRSLAGRSAKGLLIFSELINELQSHLLSSSP 537
Query: 714 YDLIWKIYNDKFYYDYV--GSLPKSEQRQANLYALALRADNF-EKTGFKGLSRFIRMIDK 770
+L+ + Y + ++E+R+ NL L A + E++ L F+
Sbjct: 538 AELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAALQYQEESEDANLEGFLST--A 595
Query: 771 ILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQN 830
L + D D N VTLMT+H SKGLEF V ++
Sbjct: 596 ALSSDADNKDT----ASNRVTLMTLHSSKGLEFPVVCLVG-------------------- 631
Query: 831 GVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKK 890
+E+ L P+ + D ++L E+ RL YV +TR+++K
Sbjct: 632 -------------MEQGLFPSYRSLDDP------------SSLEEERRLCYVGLTRAKEK 666
Query: 891 LYL 893
L+L
Sbjct: 667 LFL 669
>gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 762
Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats.
Identities = 123/543 (22%), Positives = 230/543 (42%), Gaps = 99/543 (18%)
Query: 357 QVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQ 416
+++ T++ K Y + + N+ +F D+ + + Q+Y K+ +MVDEYQ
Sbjct: 170 RLMDQKTVEVYKAYEREMKKANSLDFDDLLLKTYDLFRMYPDVLQMYQKKFRYIMVDEYQ 229
Query: 417 DNNHTQERMLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILL 475
D NH Q ++++L++ RN +VGD QSIY +R AD + DF++ K+I L
Sbjct: 230 DTNHIQYLLVQMLASAHRNLCVVGDEDQSIYSWRGADIK----NILDFEKDFRDAKVIKL 285
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
+EN+RS + +++ +V + K + N+ LI+
Sbjct: 286 EENYRSSANIVNGATAVIKN------------------NSQRKDKTLFTSNDPGDLIH-- 325
Query: 536 KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTF 595
V ++ N+ G + VAK I + NE + + D + + ++ + +
Sbjct: 326 ---------VREEKNEYEEG--RFVAKTIQSMMNEGEGSYNDYAIFYRTNAQSRVLEEQL 374
Query: 596 DDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL 655
GIP GG + Y + +E+ M+ L+ NP +D AL ++ P + + ++
Sbjct: 375 RTMGIPYRLVGGVRFY-ERMEIKDMISYLKLSINPADDIALKRIINVPARGIGKTTIEKI 433
Query: 656 ALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYD 715
+ +++E E A + +L + K+ F + ++ + L +
Sbjct: 434 --EEYAAHKNLSMFEAAEKA-----CEERLFNAGTTGKIRRFIDLMKDLQQNAQHLKLLE 486
Query: 716 LIWKIYNDKFYYDYVGSL-----PKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDK 770
+ + +Y+ +L P+S+ R NL L F + + + + +
Sbjct: 487 FFAVVLDRT---EYLAALKKDESPESQARIENLEELDNAIAQFVQERGEESTLISFLEEM 543
Query: 771 ILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQN 830
L N D D E +N+VT+MT+H SKGLE+ YVF++
Sbjct: 544 ALVNDVDSLDQE----QNSVTMMTLHISKGLEYPYVFVVG-------------------- 579
Query: 831 GVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKK 890
LEE L P+ + + N++++ E+ RL YV MTR+ +K
Sbjct: 580 -------------LEENLFPSARSAESD-----NEQDVE-----EERRLAYVGMTRARQK 616
Query: 891 LYL 893
L+L
Sbjct: 617 LWL 619
>gi|91774719|ref|YP_544475.1| UvrD/REP helicase [Methylobacillus flagellatus KT]
gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
Length = 731
Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats.
Identities = 138/541 (25%), Positives = 228/541 (42%), Gaps = 116/541 (21%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
++Y + +E +F+++ ++L N +IR+ Y ++ ++VDE+QD N Q L+
Sbjct: 179 EEYDKQCQREGVVDFAELLLRCYELLSSNKSIREHYQQRFKYILVDEFQDTNRLQYLWLK 238
Query: 428 LLSNGRN-RFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL+ N F VGD QSIY FR A ++ N +DF+ ++ L++N+RS S +L
Sbjct: 239 LLAGTNNCIFAVGDDDQSIYAFRGA--RVGN--MRDFEHDFNVQNVVKLEQNYRSHSNIL 294
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
DA N++ H + +G+ L+ S+ + P + IY+ + ++
Sbjct: 295 DAANAIIMHNRNR-LGKNLWT--------SAGKGEP-------IRIYEGYNDKD------ 332
Query: 547 DDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDG 606
E + EI LH +E ++ I LL S ++ + G+P G
Sbjct: 333 ---------EAVFIVDEIKALH-KEGIELSQIALLYRSNAQSRILEHELFSAGLPYRVYG 382
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G + + + EV L LR I N +D AL+ ++ P L + LQ L Q
Sbjct: 383 GLR-FFERAEVKHALAYLRLIANGDDDTALLRVINFPTRGIGARSLEQ--LQELARQQDS 439
Query: 667 NLYE----KMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYN 722
+L++ K + R G+G L+ F +E S+ +L + +
Sbjct: 440 SLWQAACAKAGDGRPGRG-------------LEGFVALVKQMQEESIGLTLAEQVELATR 486
Query: 723 DKFYYDYVGSLPKSEQRQANLYALALRADNF---------EKTGFKGLSRFIRMIDKI-L 772
D+ + + E R ANL L A F ++ G +S + + L
Sbjct: 487 LSGLRDHYAADKEGEDRLANLDELVNAAIAFMNQDIGMPVDENGEVAMSMLAQFLAHASL 546
Query: 773 ENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
E ADV ++A+ LMT+H +KGLEF VFI
Sbjct: 547 EAGEHQADVG----RDALQLMTVHAAKGLEFHTVFI------------------------ 578
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
LEE L P + S Y+ N L E+ RL+YVA+TR+ ++LY
Sbjct: 579 ---------SGLEEGLFPHEQSS-----YESNG-------LEEERRLMYVAVTRARQRLY 617
Query: 893 L 893
L
Sbjct: 618 L 618
>gi|148653621|ref|YP_001280714.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
gi|148572705|gb|ABQ94764.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
Length = 679
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 136/567 (23%), Positives = 240/567 (42%), Gaps = 118/567 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRF- 436
NA +F D+ +IL EN +R + ++ ++VDEYQD N Q +++L+ +F
Sbjct: 183 NAVDFDDLIVLPAKILRENPQLRDKWQNRIRYLLVDEYQDTNTAQYELIKLIVGPTGKFT 242
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFT-- 494
+VGD QSIY +R A P+ +DF + K+I L++N+RS + +L+A N+V
Sbjct: 243 VVGDDDQSIYAWRGARPENMALLKEDFPKL----KVIKLEQNYRSTNRILNAANTVIMNN 298
Query: 495 -HLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQIS 553
HL ++A L+ D Q ++ I + ++ +DD
Sbjct: 299 EHLFEKA----LWSDKGQ---------------GEKIRIINCRN--------DDD----- 326
Query: 554 LGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLK 613
E + VAKEII ++E +L S + + IP GG+ + +
Sbjct: 327 --ESERVAKEIITHKLRHGNEWEQYAVLYRSNFQARMLEAQLRQLQIPYKLSGGQSFFAR 384
Query: 614 SVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKME 673
S E+ ++ LR I NP +D A + ++ +P L +L L +H +L
Sbjct: 385 S-EIKDVMGYLRLILNPEDDSAFLRIVNTPKRGLGPATLEKLGL--FSQEHSISLLASCT 441
Query: 674 NARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSL 733
+ G + + + + F E + RE L+ ++ ++ Y D+V S
Sbjct: 442 HG--GLSHVLPIKAYSTLKEFGDFIEHYT--RELDQHPDPVPLVRQMIDETGYIDFVRSD 497
Query: 734 PKSEQRQ-----------ANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE 782
K+ ++ ++ AL RA++ + + R + ++D +LE Q + +
Sbjct: 498 SKTPHQEKGRLDNIEVLYTSIQALINRAEDDDDKTIDAVIRKLVLLD-MLEQQQEEENT- 555
Query: 783 VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKE 842
N V LMT+H +KGLEF +V+I+
Sbjct: 556 -----NKVNLMTLHAAKGLEFDFVYIMG-------------------------------- 578
Query: 843 ELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKL 902
LEE+LLP ++ + T+ E+ RL+YV +TR+ ++L L +Q +
Sbjct: 579 -LEEELLP-------------HRNSIIAETIEEERRLMYVGITRARRELTLT-LAAQRRG 623
Query: 903 GDQYDGKSENNHLPVADREHYLTFQDW 929
G Q +++ L EH DW
Sbjct: 624 GGQMRTTTQSRFLEELPEEHL----DW 646
>gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
Temecula1]
gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
Temecula1]
Length = 658
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 132/535 (24%), Positives = 223/535 (41%), Gaps = 107/535 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFM 437
NA +F D+ +QILE +D + + ++ ++VDE QD N Q R+L++L++ R F
Sbjct: 177 NAVDFDDLIRLPVQILETSDQVAIAWRERIGYLLVDECQDTNDAQYRLLKVLASPRGNFT 236
Query: 438 -VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
VGD QSIY +R A+ + Q +D+ + K+I L++N+R + VL A N++ H
Sbjct: 237 CVGDDDQSIYAWRGANAENLMQLERDYPQL----KVIKLEQNYRCPNRVLRAANALIAH- 291
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
P + L D KD + + DS E
Sbjct: 292 --------------------------NPHAHLKTLWSDQKDGERIRIWECRDSEH----E 321
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ +A EI L + ++V + D +L ++ + + IP GG +L+ E
Sbjct: 322 AEKIAAEISYLGDAKQVPWSDFCILFRGNFQSRPLEKALQLLRIPYHLTGGTA-FLERQE 380
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V +L LR + NP +D A + ++SP LA+LA Q M A
Sbjct: 381 VKNLLSWLRLLVNPDDDAAFLRAVQSPKREVGSTSLAKLAELAATKQM------PMSRAA 434
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKS 736
G QL A S L+ F + R+ S +L+ ++ + G L +
Sbjct: 435 ESLGALQQLPARAASG-LNKFTDILRELRQQVSRVSAAELVRRL------AEVSGLLTEL 487
Query: 737 EQRQANLYALALRADNFEKTG--FKGLSRFIRMIDKI----LENQNDLADVEVALPKNAV 790
++ + + R N E+ F+G + D + L ++ND D N V
Sbjct: 488 REQSNDEASYQRRKRNVEELAEWFEGDPFGASVGDLVSQLALLSRNDKDD-----GGNQV 542
Query: 791 TLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLP 850
+MT+H SKGLEF+YVFI ++GV
Sbjct: 543 RMMTLHASKGLEFRYVFIAGC-----------------EDGV------------------ 567
Query: 851 TVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQ 905
LP++++ E + E+ RLLYV +TR++++L++ + G++
Sbjct: 568 --------LPHEVSLEE---GNVQEERRLLYVGITRAKEQLWMSYSKCARRFGER 611
>gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
15703]
gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
15703]
Length = 879
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 123/553 (22%), Positives = 222/553 (40%), Gaps = 114/553 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSN------ 431
NA +F D+ +++L+ + + Y ++ + VDEYQD NH Q ++ LS
Sbjct: 204 NAVDFDDLIMRTVELLQTCPQVSEYYRHRFRYIFVDEYQDTNHAQYVLVRELSGIDSDEQ 263
Query: 432 ------GRNRF------MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENF 479
G R +VGD QSIY FR AD + +DF++ + K I+L++N+
Sbjct: 264 PDPQARGAGRVGPSWITVVGDSDQSIYAFRGADI----RNIQDFEQDFPNAKTIMLEQNY 319
Query: 480 RSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQ 539
RS +LDA N+V I +N ++ Q
Sbjct: 320 RSTQTILDAANAV----------------------------IAKNENRKPKKLWTALGQG 351
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
++ + D+ Q E +A EI R+H EE V + DI ++ + ++ + + +
Sbjct: 352 DKIVGYAADNAQ---QEAGWIANEIARIHTEEDVAYRDIAIMYRANAQSRSLEEAMINAN 408
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
+P GG + Y + EV + L++I NP ++ + +L P A +
Sbjct: 409 LPYQLVGGTKFYERR-EVKDAIAYLQAIVNPADNVNVRRILNVPKRGLGAR--AEGLVAG 465
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL--YDLI 717
D H +E +E+ Q++ +T + L AF + +F+ + +++
Sbjct: 466 YADAHGLTFFESIEHM-----DQIEGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVV 520
Query: 718 WKIYNDKFYYDYV--GSLPKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKILEN 774
++ + + + P+ R NL L A FE+ T L+ F+ + ++
Sbjct: 521 AEVLDKSGLLEELQRSEDPQDASRVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADS 580
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
+ E VT+MT+H +KGLE+ YVF+
Sbjct: 581 DQLPGEGE---DSGKVTMMTLHTAKGLEYPYVFLTG------------------------ 613
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+E+ P + DT + LSE+ RL YV +TR++++LY+
Sbjct: 614 ---------MEQGTFPHQRAMEDT------------SELSEERRLAYVGITRAKRRLYVT 652
Query: 895 GKGSQEKLGDQYD 907
+ + G D
Sbjct: 653 RAAVRAQWGQAND 665
>gi|73540567|ref|YP_295087.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
gi|72117980|gb|AAZ60243.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
Length = 786
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 138/573 (24%), Positives = 219/573 (38%), Gaps = 138/573 (24%)
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423
+D Y Q +E +F+++ ++L NDAIRQ Y ++ V+VDE+QD N Q
Sbjct: 168 VDLYAAYDQQCQREGVVDFAELLLRCYELLRYNDAIRQHYQHRFSHVLVDEFQDTNVLQY 227
Query: 424 RMLELLS-----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKEN 478
+ L+LL+ N F VGD QSIY FR A+ +DF+ KLI L++N
Sbjct: 228 QWLKLLAGHGTQNPAAVFAVGDDDQSIYAFRGANV----GNMRDFEHEFRVRKLIKLEQN 283
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538
+RS +LD+ N + +H +G+ L D AG E + D
Sbjct: 284 YRSHGHILDSANHLISH-NSRRLGKNLRTD-----AG---------HGEPVRVFQAGSDG 328
Query: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598
Q VE+ +QI+ G + +I +L S ++ I
Sbjct: 329 QEASWLVEEIRDQIAQGMSR-----------------SEIAILYRSNAQSRVIEHALFSA 371
Query: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658
GI GG + + + E+ L L+ ++NP ND A ++ P L + LQ
Sbjct: 372 GIAYRVYGGLR-FFERAEIKHALAYLQLLENPRNDAAFGRVVNFPARGIGARSLEQ--LQ 428
Query: 659 NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW 718
+ Q+ +L E V + A +KL AF R + +L +++
Sbjct: 429 DAARQYNCSLAEA-----------VAYVPGAAGSKLAAFVRLIEQMRAETRRMTLAEVVE 477
Query: 719 KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNF---EKTGFKGL---------SRFIR 766
+ N + + + R NL L A F E G + L SR ++
Sbjct: 478 HVTNASGLITHYRGEKEGQDRIENLQELVTAAQAFVVEEGYGLEALAAVIPVGFESRAVQ 537
Query: 767 MIDKILENQN--------------------------DLADVEVALPKNAVTLMTIHKSKG 800
+ ++ E + D + ++AV +MT+H +KG
Sbjct: 538 AVQQLAEGDQAQQVLDPEALPVVMTPLVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKG 597
Query: 801 LEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLP 860
LEF VFI LEE L P +M+
Sbjct: 598 LEFNVVFITG---------------------------------LEEGLFPHENSAMEQ-- 622
Query: 861 YQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
L E+ RL+YVA+TR+ ++LYL
Sbjct: 623 ----------DGLEEERRLMYVAITRARERLYL 645
>gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
Length = 1115
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 196/826 (23%), Positives = 334/826 (40%), Gaps = 107/826 (12%)
Query: 43 ILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLT 102
+LV A AGSGKT VM R+ +GV + TFT AA EL+ R+EK T L L
Sbjct: 21 LLVEAGAGSGKTSVMAGRVAVLFGKGVEPKNIAAITFTELAASELRLRIEK-FTTALSLG 79
Query: 103 N-DTALKQFLSEQLLGLQTADI------------GTMDAFTQKLVTQYGYTLGISPNFRI 149
+ L Q E + + A++ T+ F Q L+ Y GI P I
Sbjct: 80 DVPPDLTQAFPEGVPEAEKANLYRACQSFDQLACTTIHGFAQSLIKPYPAEAGIDPGADI 139
Query: 150 LQDKSEQDLLKNDVFDDLFTDYRTGDQAE-LFTKLV-RNFAGNRKDSSNFRQIIYKIYDF 207
+ D E +L + +D + D A+ L +LV + G K Q + K D
Sbjct: 140 V-DPDEAELAFGERYDAWLKQRLSVDDADGLVAQLVLADEGGGLKLIEEVAQFLRKNRDA 198
Query: 208 SQATDNPQRW---LLENFLKGANTYKD-FSAIPEQEVKDFLNTLQETALALRDVTDLEDY 263
A P W + + + ++D +A+ +E ++T L R + L D
Sbjct: 199 RCA---PAAWAEKTMADVIAAVKRFEDALAAVGFEE--------EDTGLRCRTLIALVDI 247
Query: 264 ---KQVTAKGTPTAA------YQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIP 314
+++A TAA + RH + + +D K+ A
Sbjct: 248 LNPGKLSAGAPDTAALIAALNFPRHTSCFTEKGTRRQLRNGTKWQDAAAKVGLKKA---- 303
Query: 315 SGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSL--PLLQVLQSFTLDFSKQYLQ 372
G + A V P++ H+ L ET+ L L +Q L++
Sbjct: 304 DGKKTSDALV--PLYDGCHNAL------ETLLAAIAGELLSRLCAEMQGLLLEWRDYKRD 355
Query: 373 AKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL--- 429
A + +F D+ A +L + +R+ +Y V+VDE+QD + Q +L ++
Sbjct: 356 AAL----LDFDDLLFTARDLLAGHPEVRRALSQRYRYVLVDEFQDTDPLQTEILWMICGE 411
Query: 430 ----SNGR---------NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLK 476
++G FMVGD KQ+IYRFR AD N P+ +L +
Sbjct: 412 DCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRGAD---VNAYLAARSAVPQDARLA-IT 467
Query: 477 ENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTK 536
NFRS +L N F ++ E G+ + A S + P V + T
Sbjct: 468 ANFRSVEPILAFVNKRFERVLSEEAGQPGF-------AELSPVRPPNGDAPAVVALDVTL 520
Query: 537 DQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFE-----DITLLVSSRTRNDGI 591
Q ++ D+ +L E+ +++H+ E + DI LL + T
Sbjct: 521 PQGASGVSAIRDAEAAALAELCCRLVGNLQVHDPETKELRPCRLGDIALLAPAGTELWRF 580
Query: 592 LQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDD 651
+ +D GIP+ T G + + + E+ ++ +R++ +P + AL ALLR P+ E++
Sbjct: 581 EEVLEDRGIPVATQAG-KGFFRRQEIHDLIALVRTLADPRDTLALGALLRGPLIGLTENE 639
Query: 652 LARLALQNLP-DQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLL 710
L + ++ LP D + + N + I A++ K E + R +
Sbjct: 640 LLDI-MEGLPVDPDRPARLPTLTVGTNPEH-----IAHAVARKA---IENLQALRRRIRI 690
Query: 711 NSLYDLIWKIYNDKFYYDYVGSLPKS--EQRQANLYALALRADNFEKTGFKGLSRFIRMI 768
+ Y L+ +D ++ ++ E+ AN+ A ++ +GL F R +
Sbjct: 691 TTPYALLADAMSDFHVRPHLRQRFRTGAERAVANVDLFLEFARAYD---VRGLRAFSRDM 747
Query: 769 DKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKK 814
E+ D A+ + +V+L+T+H +KGLE+ V +N+ K
Sbjct: 748 TAKWEDDEDQAEGRPDAEEESVSLITVHAAKGLEWPVVIPINMTGK 793
>gi|118047035|ref|ZP_01515678.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
gi|117996495|gb|EAV10693.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
Length = 646
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 137/568 (24%), Positives = 224/568 (39%), Gaps = 139/568 (24%)
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDN 418
L F ++Y +A Q NA +F D+ A ++L E+ + Y ++ V+VDEYQD
Sbjct: 167 LDRFVAACYRRYQRALEQANALDFDDLILTAYRLLSEDHDLLATYQQRWPHVLVDEYQDT 226
Query: 419 NHTQERMLELLS-----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI 473
+ +Q ++ELL+ R+ F+VGD QSIY FR AD I N+ DF + ++I
Sbjct: 227 DPSQHALIELLTRPTAHRPRSLFVVGDAMQSIYGFRNADHNIINRFTVDFPD----AQVI 282
Query: 474 LLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIY 533
L N+RS+ +LDA ++ H +V + +L A ++ E VLI
Sbjct: 283 ELTTNYRSRQPILDAAYAIIRH--SRSVSPM------ELRAAATVAA------ERSVLIS 328
Query: 534 DTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQ 593
+ KD + E + VA+ I L + + + ++ +L +R + + Q
Sbjct: 329 EAKDSRE---------------EAEQVARSIAELQRQGR-RLREMAVLYRTRHMSRPLEQ 372
Query: 594 TFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLA 653
+P V G + ++V V + LR I NP ++ +L + P LA
Sbjct: 373 ALRHARLPYVVRGSVSFFDRAV-VRDAIAYLRCIANPADNLSLTRIANVPARGLGGQALA 431
Query: 654 RLA----LQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
+A Q++P L E + G + ++ F WR +
Sbjct: 432 TIAAFASAQSIP------LSEAL-----GHAPVIPRLSPRAVEGARRLFALLQRWRRLA- 479
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSE------QRQANLYALALRADNFEKTGFKG-LS 762
G++P ++ + ALA R D E + L
Sbjct: 480 --------------------TGTMPPDHLLADVLEQSGYMAALAERFDAEELAEARAHLQ 519
Query: 763 RFIRMIDKILENQNDLADVEVALPKNA---------VTLMTIHKSKGLEFKYVFILNIDK 813
+R ++ E L E+AL NA V L+TIH +KGLE+ +VF++
Sbjct: 520 ELLRAAEEHTELSAFLQ--EIALMTNADDDDDERDRVQLLTIHAAKGLEWPFVFVVG--- 574
Query: 814 KFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATL 873
LEE LP + D + L
Sbjct: 575 ------------------------------LEEGTLPHERSLGDP------------SAL 592
Query: 874 SEQMRLLYVAMTRSEKKLYLVGKGSQEK 901
E+ RL YVA TR+ ++LYL S+ +
Sbjct: 593 EEERRLCYVAFTRAAERLYLSWTASRNR 620
>gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
gi|38604841|sp|Q8CRT9|PCRA_STAES ATP-dependent DNA helicase pcrA
gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
Length = 729
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 127/538 (23%), Positives = 227/538 (42%), Gaps = 93/538 (17%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y + + A +F D+ I + E + Y +K+ + VDEYQD N Q +++
Sbjct: 174 KGYQRQLSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVK 233
Query: 428 LLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL+N +N +VGD QSIY +R AD Q F+E K I L++N+RS +L
Sbjct: 234 LLANKFKNLCVVGDSDQSIYGWRGADIQ----NILSFEEDYPEAKTIFLEQNYRSTKNIL 289
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+A N V H + + A S KI Y Y+ +++
Sbjct: 290 NAANEVIKHNSERKPKGLW-------TANSGGDKIQY---------YEAMTERD------ 327
Query: 547 DDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDG 606
E + V KEI++ H ++ ++ +L + ++ + +TF IP G
Sbjct: 328 ---------EAEYVVKEIMK-HQRSGKKYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G++ Y + E+ +L LR I N +D +L ++ P + ++ Q Q+
Sbjct: 378 GQKFYDRK-EIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKI--QTYALQNNI 434
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
++++ + + G ++ E +S + + +EF ++ + D + + +
Sbjct: 435 SMFDALAEV-DFIGLSKKVTQECIS--FYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDM 491
Query: 727 YDYVGSLPKSEQRQANLYA-LALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVAL 785
D S+ +S R NL +++ D E T + S + D L +AD++ A
Sbjct: 492 LDREQSI-ESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSL-----VADIDEAD 545
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
+N VTLMT+H +KGLEF VFI+ +E
Sbjct: 546 TQNGVTLMTMHSAKGLEFPIVFIMG---------------------------------ME 572
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLG 903
E L P ++ ++ + E+ R+ YVA+TR+E+ LY+ ++ G
Sbjct: 573 ESLFPHIRAIKSEDDHE----------MEEERRICYVAITRAEELLYITNATTRMLFG 620
>gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
gi|81673999|sp|Q5HN29|PCRA_STAEQ ATP-dependent DNA helicase pcrA
gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
Length = 729
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 127/538 (23%), Positives = 227/538 (42%), Gaps = 93/538 (17%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y + + A +F D+ I + E + Y +K+ + VDEYQD N Q +++
Sbjct: 174 KGYQRQLSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVK 233
Query: 428 LLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL+N +N +VGD QSIY +R AD Q F+E K I L++N+RS +L
Sbjct: 234 LLANKFKNLCVVGDSDQSIYGWRGADIQ----NILSFEEDYPEAKTIFLEQNYRSTKNIL 289
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+A N V H + + A S KI Y Y+ +++
Sbjct: 290 NAANEVIKHNSERKPKGLW-------TANSGGDKIQY---------YEAMTERD------ 327
Query: 547 DDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDG 606
E + V KEI++ H ++ ++ +L + ++ + +TF IP G
Sbjct: 328 ---------EAEYVVKEIMK-HQRSGKKYSEMAILYRTNAQSRVLEETFMKSNIPYTMVG 377
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G++ Y + E+ +L LR I N +D +L ++ P + ++ Q Q+
Sbjct: 378 GQKFYDRK-EIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKI--QTYALQNNI 434
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
++++ + + G ++ E +S + + +EF ++ + D + + +
Sbjct: 435 SMFDALAEV-DFIGLSKKVTQECIS--FYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDM 491
Query: 727 YDYVGSLPKSEQRQANLYA-LALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVAL 785
D S+ +S R NL +++ D E T + S + D L +AD++ A
Sbjct: 492 LDREQSI-ESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSL-----VADIDEAD 545
Query: 786 PKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELE 845
+N VTLMT+H +KGLEF VFI+ +E
Sbjct: 546 TQNGVTLMTMHSAKGLEFPIVFIMG---------------------------------ME 572
Query: 846 EKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLG 903
E L P ++ ++ + E+ R+ YVA+TR+E+ LY+ ++ G
Sbjct: 573 ESLFPHIRAIKSEDDHE----------MEEERRICYVAITRAEELLYITNATTRMLFG 620
>gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
Length = 854
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 210/902 (23%), Positives = 363/902 (40%), Gaps = 150/902 (16%)
Query: 43 ILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLT 102
I +SASAG+GKT ++ R++ ++ G + TFT AA E+ ER+ ++ L
Sbjct: 13 IWISASAGTGKTRTLVNRVLRLLITGHK--NILCLTFTNAAAHEMTERIHSILSTWTILK 70
Query: 103 NDTALKQF---------------LSEQLLGLQ--TADIGTMDAFTQKLVTQYGYTLGISP 145
N+ K+ E LQ + I T+ +F +L++ + GISP
Sbjct: 71 NEELKKELQDIIPTNITLTEYKRARELFNNLQNLSLSIKTIHSFCYQLISTFPIETGISP 130
Query: 146 NFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIYKIY 205
N I +D SE + +F L D D + + + +++YKI
Sbjct: 131 NCTI-KDFSES---FSKIFYKLLHDPTIKDHFSAISHEI--------TETTIYELLYKI- 177
Query: 206 DFSQATDNPQRWLLENFLKGANTYKD-FSAIPEQEVKDFLNTLQETALALRDVTDLEDYK 264
S+ N + L L NT D I ++ + L E ++ RD K
Sbjct: 178 -LSKQDYNLNKDSLYKKLNVHNTVTDQLLPIDNHQLNHLIKILSEGSI--RD-------K 227
Query: 265 QVTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGV 324
+ + K A + K+ ++L +++ F +L + I+++I +
Sbjct: 228 KNSDKLVKWNALSQKYKL-QKLNEYIKIFINLPSLE-----KKPISSIITKKTLANFPEI 281
Query: 325 KYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSD 384
+ + L +K T K +++ ++++ + F K Y Q K + N + +D
Sbjct: 282 EKIILNIQEEILNFIKMFYTK-KIAERTTHIIEIAKCFI----KLYQQDKQKLNYLDHND 336
Query: 385 IAHFAIQIL---EENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSN---------- 431
I + A+ +L + D I K +++DE QDN+ Q ++ L +
Sbjct: 337 IINLALNLLTNIDYKDWILFHLDSKIDHLLIDESQDNSIKQWNIISHLCHEFFSGIGTTE 396
Query: 432 -GRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATN 490
R F+VGDIKQSIY F+ A P F F + K++ ++FRS +L +
Sbjct: 397 ESRTLFVVGDIKQSIYSFQNARPDYFEPMCHYFTQQSTQHKILHFTKSFRSTPPILKLVD 456
Query: 491 SVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS- 549
VF + E + S +P I D K+ +N L E+ +
Sbjct: 457 RVFNNFRHEISFNTEKIEHEIFRYNDSGYVEIWP-------IIDIKNHKNFSLDFENQTY 509
Query: 550 NQISLGEVKLVAKEI--------IRLHNEEKVQFEDITLLVSSRT-RNDGILQTFDDYGI 600
+ SL +A +I I L + D +LV RT D ++ I
Sbjct: 510 SDTSLLLASTIANKIHTWITNKRILLARNRPITAGDFLILVRHRTCFIDHVITALKKLDI 569
Query: 601 PLVTDGGEQNYLKSVEVMVMLDTL---RSIDNPLNDYALVALLRSPMFAFDEDDLARLAL 657
P + ++ K ++ +++ D + + P ND AL+ LL+SP+F F+E+ + LA
Sbjct: 570 PTLG----RDKFKIMDYIIIQDLVNLGEFLLLPENDLALIGLLKSPIFEFNEEQIFDLAY 625
Query: 658 QNLPDQHKQNLYE----KMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL 713
++++Q+L+E K N N Q + + +KL S LN L
Sbjct: 626 ----NRNQQHLWEVLQLKFSNISNYLKQLINI------SKLH------------SPLN-L 662
Query: 714 YDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILE 773
Y I + KF S + NL FE L FI I +
Sbjct: 663 YHYIISEHKHKFIKRLGQSSTEITGEFINLLI------QFESNNLNSLQAFIYWI----K 712
Query: 774 NQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVG 833
N N ++ K+ V +MTIH +KG++ VF+ + +I + L+
Sbjct: 713 NINPEIKSDINHTKDYVKIMTIHNAKGMQAPIVFLSDTT---TIPKSETQLVFD------ 763
Query: 834 IKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
EE ++ ++ L L ++ + +E +RLLYVAMTR+E +LY+
Sbjct: 764 -----------EEYTPFWIRNDINDLCENLKAKQ-KTQEYNEYLRLLYVAMTRAEDELYI 811
Query: 894 VG 895
G
Sbjct: 812 TG 813
>gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
Length = 830
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 134/569 (23%), Positives = 225/569 (39%), Gaps = 104/569 (18%)
Query: 359 LQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDN 418
+S D K Y Q Q NA +F D+ + + A+ + Y ++ V+VDEYQD
Sbjct: 221 FESAVADVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPALAESYRRRFRHVLVDEYQDT 280
Query: 419 NHTQERML-ELLSNG---RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLIL 474
NH Q ++ E++ G +VGD QSIY FR AD + +F++ + + I
Sbjct: 281 NHAQYALVREIVGEGPGASELTVVGDSDQSIYAFRGADI----RNIVEFEKDYPNARTIK 336
Query: 475 LKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYD 534
L++N+RS +L A NSV I N + ++
Sbjct: 337 LEQNYRSTQNILTAANSV----------------------------ISRNPNRPEKRLWT 368
Query: 535 TKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQT 594
+ + ++ + ++ E + +AKEI RL +E+ ++ D+ + + ++ I
Sbjct: 369 AEGEGHKIIGYVGENEH---DEAQFIAKEIDRLQDEDNLRPGDVAIFYRTNAQSRSIEDV 425
Query: 595 FDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLAR 654
G+P GG + Y + E+ L LR + NP +D L +L P D A
Sbjct: 426 LVRVGLPYKVVGGTRFYERK-EIKDALAYLRVLVNPDDDVNLRRVLNEPKRGI--GDRAE 482
Query: 655 LALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLY 714
A+ L ++ + + A G + T +++A L F + E + +
Sbjct: 483 GAVAALAERERTSFMAAARRADQAPG----MATRSVNAVL-GFVKLLDDLAEVASGSGAA 537
Query: 715 DLIWKIYNDKFYYDYVGSL--PKSEQRQANLYALALRADNFEKTGFKG-LSRFIRMI--- 768
+ + Y + S P+ E R NL L +E+ +G L F+ +
Sbjct: 538 AALEAVLEQTGYLAGLRSSTDPQDESRVENLAELVAVVREYEQENPEGSLGAFLEQVSLV 597
Query: 769 ---DKILENQNDLADVEVALPK--NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSP 823
D+I + D VA K VTLMT+H +KGLEF VF+
Sbjct: 598 ADADQIPDAPGADIDAAVAEAKRLGVVTLMTLHTAKGLEFPVVFLTG------------- 644
Query: 824 LILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVA 883
+E L P + + D L+E+ RL YV
Sbjct: 645 --------------------MEHGLFPHQRSATDP------------KELAEERRLAYVG 672
Query: 884 MTRSEKKLYLVGKGSQEKLG-DQYDGKSE 911
+TR+ K+LY+ + G QY+ S+
Sbjct: 673 LTRARKRLYVTRSEVRSMWGQSQYNPASQ 701
>gi|119879346|ref|ZP_01646098.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
R551-3]
gi|119818268|gb|EAX20992.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
R551-3]
Length = 658
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 131/531 (24%), Positives = 220/531 (41%), Gaps = 99/531 (18%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFM 437
NA +F D+ +Q+LEEN I + ++ ++VDE QD N Q R+L+ L+ + F
Sbjct: 177 NAVDFDDLIRLPVQVLEENPDIAVAWRERIGYLLVDECQDTNDAQYRLLKQLAGDKGNFT 236
Query: 438 -VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
VGD QSIY +R A+P+ Q +D+ ++I L++N+R + VL A N++ +
Sbjct: 237 CVGDDDQSIYAWRGANPENLQQMGRDYPAL----EIIKLEQNYRCSNRVLRAANALIANN 292
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
E + ++ D + ++ +++ ++ ++ E
Sbjct: 293 PHEHLKKLWSDQA----------------DGERIRVWECRNSEH---------------E 321
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ VA EI + KV + D +L ++ + + IP GG +L+ E
Sbjct: 322 AEKVAAEIAFVAQSRKVPWSDFCILFRGNFQSRPLEKAMQLLRIPYHLTGGTM-FLERQE 380
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
V L LR + NP +D A + ++SP LA+LA + Q M A
Sbjct: 381 VKDTLAWLRLLVNPDDDTAFMRAVQSPKRDVGAGTLAKLA------ELAQEKDMPMAQAA 434
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKS 736
G QL A ++ L F + R + S D+I K+ + G L +
Sbjct: 435 EAIGALQQLPPRAANS-LARFTDILRDLRAQTRQISSGDMIRKVAKES------GLLSEL 487
Query: 737 EQRQANLYALALRADNFEKTG--FKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMT 794
Q+ + RA+N E+ F+G R D + L+ + N V +MT
Sbjct: 488 RQQAKEEASYQRRANNIEELAQWFEGGPRGATAAD-LAGQLALLSRSDKDEGGNQVRMMT 546
Query: 795 IHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKV 854
+H SKGLEF YVFI+ ++GV
Sbjct: 547 MHASKGLEFPYVFIVGC-----------------EDGV---------------------- 567
Query: 855 SMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQ 905
LP+Q++ E L E+ RLLYV +TR++ +L++ K G+
Sbjct: 568 ----LPHQVSLDE---GNLQEERRLLYVGITRAKIQLWMSYSKLTRKFGEH 611
>gi|94311565|ref|YP_584775.1| UvrD/REP helicase [Ralstonia metallidurans CH34]
gi|93355417|gb|ABF09506.1| UvrD/REP helicase [Ralstonia metallidurans CH34]
Length = 787
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 133/568 (23%), Positives = 210/568 (36%), Gaps = 133/568 (23%)
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423
+D Y + +E +F+++ ++L NDAIRQ Y ++ V+VDE+QD N Q
Sbjct: 168 VDLYAAYDEQCQREGVVDFAELLLRCYELLRYNDAIRQHYQHRFRHVLVDEFQDTNVLQY 227
Query: 424 RMLELLS-----NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKEN 478
+ L+LL+ N F VGD QSIY FR A+ +DF++ LI L++N
Sbjct: 228 QWLKLLAGYGSGNAAAVFAVGDDDQSIYAFRGANV----GNMRDFEQEFRVRHLIKLEQN 283
Query: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538
+RS +LD+ N + +H + D H E + D
Sbjct: 284 YRSHGHILDSANHLISHNARRLGKNLRTDAGH---------------GEPVRVFQAGSDG 328
Query: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598
Q VE+ +QI+ G + +I +L S ++ I
Sbjct: 329 QEASWIVEEIRDQIAQGMSR-----------------SEIAILYRSNAQSRVIEHALFSS 371
Query: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658
GIP GG + + + EV L L+ I+NP ND A ++ P L LQ
Sbjct: 372 GIPYRVYGGLR-FFERAEVKHALAYLQLIENPRNDAAFGRVVNFPTRGIGAKSLE--VLQ 428
Query: 659 NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW 718
+ Q+ +L E V + + L AF R + +L +
Sbjct: 429 DAARQYNCSLAEA-----------VAYVPGKAGSSLGAFIRLIEQMRAETSRMTLAQTVE 477
Query: 719 KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNF---EKTGFKGLSRFI---------- 765
+ N + + + + R NL L A F E G + L R +
Sbjct: 478 YVTNTSGLMTHYQTEKEGQDRIENLQELVTAAQAFVVEEGYGLEALGRMLPANRDAMPAL 537
Query: 766 ---RMIDKILENQN-----------------DLADVEVALPKNAVTLMTIHKSKGLEFKY 805
++L+ + + D + ++AV +MT+H +KGLEF
Sbjct: 538 AQGEQDQQVLDPEQLPVVMTPLVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFNV 597
Query: 806 VFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNK 865
VFI LEE L P +M+
Sbjct: 598 VFITG---------------------------------LEEGLFPHENSAMEA------- 617
Query: 866 RELRLATLSEQMRLLYVAMTRSEKKLYL 893
L E+ RL+YVA+TR+ +LYL
Sbjct: 618 -----DGLEEERRLMYVAITRARARLYL 640
>gi|106895466|ref|ZP_01362558.1| ATP-dependent DNA helicase PcrA [Clostridium sp. OhILAs]
gi|106773229|gb|EAT29821.1| ATP-dependent DNA helicase PcrA [Clostridium sp. OhILAs]
Length = 739
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 133/549 (24%), Positives = 226/549 (41%), Gaps = 108/549 (19%)
Query: 357 QVLQSFTLDFSKQYL-------QAKMQEN-AFEFSDIAHFAIQILEENDAIRQLYIDKYH 408
+ L+ F DF Q + Q +M+ N A +F D+ +Q+ + + + + Y +K+
Sbjct: 170 EYLEEFGNDFRNQKIAEIYRLYQDRMKSNNALDFDDLIMKTVQLFQTHPTVLRYYQNKFK 229
Query: 409 EVMVDEYQDNNHTQERMLELLSNGR-NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHP 467
++VDE+QD N Q ++ LL+ N +VGD QSIY +R AD + KDF
Sbjct: 230 YILVDEFQDTNMAQYTLISLLAKSHGNLCVVGDDDQSIYGWRGADIRNILGFEKDF---- 285
Query: 468 EHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE 527
+ +++ L++N+RS +LDA N V + D ++ D+ + I Y +
Sbjct: 286 PNTQVVKLEQNYRSTKSILDAANMVVANNTDRKSKKLWTDN-------QDGEIIQYYRAN 338
Query: 528 TQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTR 587
+ YD E ++ I +L+ EE + + +L + +
Sbjct: 339 NE---YD---------------------EASFISGTIEKLNEEENRPYSEFAILYRTNAQ 374
Query: 588 NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAF 647
+ + + IP G + Y + E+ +L LR+I+NP++D ++ ++ P
Sbjct: 375 SRALEEMLMKRAIPYKIYSGTRFYDRK-EIKDILAYLRTIENPVDDVSVKRIINVPKRGI 433
Query: 648 DEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREF 707
+ R D++ + E A Q T + + + F E S R+
Sbjct: 434 GIKSIDRF------DEYAEGKNESFFGALLHVDQMPDQSTR-VKVQTNKFTELIQSLRDR 486
Query: 708 SLLNSLYDLIWKIYNDKFYYDYVGSLPK--SEQRQANLYA-LALRADNFEKTGFKGLSRF 764
S+ D++ +IY Y D + + K +E R NL L++ D E + K L F
Sbjct: 487 QDEMSVTDIVKEIYEKTGYIDALMAEDKIEAESRIENLQEFLSVTKDFDENSEVKTLEEF 546
Query: 765 IRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPL 824
+ LE D D E N VTLMT+H +KGLEF VFI
Sbjct: 547 LARTS--LETTLDENDEE-----NTVTLMTLHSAKGLEFPVVFI---------------- 583
Query: 825 ILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAM 884
+EE + P+ L+ L E+ RL YV +
Sbjct: 584 -----------------PGMEESIFPSA-------------MSLQENNLEEERRLCYVGI 613
Query: 885 TRSEKKLYL 893
TR+ +KLY+
Sbjct: 614 TRAREKLYM 622
>gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
Length = 776
Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats.
Identities = 130/552 (23%), Positives = 225/552 (40%), Gaps = 119/552 (21%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL-SNGRNR- 435
NA +F ++ +Q+ +N+ + + ++ ++VDEYQD N TQ ++ LL +NG R
Sbjct: 217 NALDFDNLIWIPVQLFRQNEQVLAYWHQRFRHILVDEYQDTNRTQYELIRLLATNGETRR 276
Query: 436 ----------FMVGDIKQSIYRFRQADPQI---FNQKFKDFQEHPEHGKLILLKENFRSQ 482
F+VGD QSIYRFR AD I F + F D + LI L+EN+RS
Sbjct: 277 SEWDWTNRSLFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTRTLIKLEENYRST 336
Query: 483 SEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQD 542
+ +L A N V E + +IL P ++ Y +D+
Sbjct: 337 ATILQAAN-VLIEKNTERIDKILR---------------PTRPPGHPIVCYQAEDE---- 376
Query: 543 LAVEDDSNQISLGEVKLVAKEIIRLHNEE-KVQFEDITLLVSSRTRNDGILQTFDDYGIP 601
+ E + V I RLH++ + D +L + ++ + +GIP
Sbjct: 377 -----------MAEAEFVVNTIRRLHSQNPNSSWGDFAILYRTNAQSRPFEEVLLRWGIP 425
Query: 602 LVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL----AL 657
GG + Y + E+ +L LR + NP + ++L+ ++ P + L +L A
Sbjct: 426 YTVVGGLRFYDRK-EIKDVLAYLRVVLNPADSFSLLRIINVPRRGIGKSTLDKLSEAAAA 484
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLI 717
N+P + + N G+ + + + F + W S L+
Sbjct: 485 LNVP---LWTILSDEASVTNLLGRSAKPVLQ--------FAQLIQHWHRQMAQVSAAALL 533
Query: 718 WKIYNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQ 775
+ D Y + + + ++E+R AN+ L A FE+ + ++ L N
Sbjct: 534 EGLLRDCGYLEDLKAQGTEEAEERIANVMELYNAARQFEE------EQEDPSLEAFLSNV 587
Query: 776 NDLADVEVALPKNA--VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVG 833
+ +D++ L + A V+LMT+H SKGLEF VF++
Sbjct: 588 SLASDLDT-LQEGAEKVSLMTLHASKGLEFPVVFLVG----------------------- 623
Query: 834 IKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
LE+ L P + D A L E+ RL YV +TR+ ++L++
Sbjct: 624 ----------LEQGLFPNFRALEDP------------AALEEERRLCYVGITRAREQLFV 661
Query: 894 VGKGSQEKLGDQ 905
+ G++
Sbjct: 662 CHASERRLYGNR 673
>gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
L2-32]
gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
L2-32]
Length = 896
Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats.
Identities = 123/553 (22%), Positives = 222/553 (40%), Gaps = 114/553 (20%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSN------ 431
NA +F D+ +++L+ + + Y ++ + VDEYQD NH Q ++ LS
Sbjct: 221 NAVDFDDLIMRTVELLQTCPQVSEYYRHRFRYIFVDEYQDTNHAQYVLVRELSGIDSDEQ 280
Query: 432 ------GRNRF------MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENF 479
G R +VGD QSIY FR AD + +DF++ + K I+L++N+
Sbjct: 281 PDPQARGAGRVGPSWITVVGDSDQSIYAFRGADI----RNIQDFEQDFPNAKTIMLEQNY 336
Query: 480 RSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQ 539
RS +LDA N+V I +N ++ Q
Sbjct: 337 RSTQTILDAANAV----------------------------IAKNENRKPKKLWTALGQG 368
Query: 540 NQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYG 599
++ + D+ Q E +A EI R+H EE V + DI ++ + ++ + + +
Sbjct: 369 DKIVGYAADNAQ---QEAGWIANEIARIHTEEDVAYRDIAIMYRANAQSRSLEEAMINAN 425
Query: 600 IPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQN 659
+P GG + Y + EV + L++I NP ++ + +L P A +
Sbjct: 426 LPYQLVGGTKFYERR-EVKDAIAYLQAIVNPADNVNVRRILNVPKRGLGAR--AEGLVAG 482
Query: 660 LPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSL--YDLI 717
D H +E +E+ Q++ +T + L AF + +F+ + +++
Sbjct: 483 YADAHGLTFFESIEHM-----DQIEGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVV 537
Query: 718 WKIYNDKFYYDYV--GSLPKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKILEN 774
++ + + + P+ R NL L A FE+ T L+ F+ + ++
Sbjct: 538 AEVLDKSGLLEELQRSEDPQDASRVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADS 597
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
+ E VT+MT+H +KGLE+ YVF+
Sbjct: 598 DQLPGEGE---DSGKVTMMTLHTAKGLEYPYVFLTG------------------------ 630
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+E+ P + DT + LSE+ RL YV +TR++++LY+
Sbjct: 631 ---------MEQGTFPHQRAMEDT------------SELSEERRLAYVGITRAKRRLYVT 669
Query: 895 GKGSQEKLGDQYD 907
+ + G D
Sbjct: 670 RAAVRAQWGQAND 682
>gi|21672830|ref|NP_660897.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|4033461|sp|O51889|REP_BUCAP ATP-dependent DNA helicase rep
gi|2827035|gb|AAC38127.1| replicase [Buchnera aphidicola]
gi|21623483|gb|AAM68108.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 658
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 131/542 (24%), Positives = 236/542 (43%), Gaps = 111/542 (20%)
Query: 366 FSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERM 425
F KQY + N +F D+ +L+ N I+ + K ++VDEYQD N++Q +
Sbjct: 167 FYKQYTFHLRKSNILDFDDLICIPTSLLKNNQIIQNRWQKKISYLLVDEYQDTNNSQYEL 226
Query: 426 LELLSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSE 484
+++L+N + F +VGD QSIY +R A PQ KDF + K+I +++N+RS
Sbjct: 227 IKMLTNVNSNFTLVGDDDQSIYSWRGAKPQNLFLIKKDF----PNLKIIKMEQNYRSYGR 282
Query: 485 VLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLA 544
+L A N + ++ + ++ + + N+ +V+I K+++N
Sbjct: 283 ILKAANKLISNNLHYFKKKLFSNLEY--------------GNKIKVII--GKNEKN---- 322
Query: 545 VEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVT 604
E + +A +II + + +Q++D +L ++ + +TF IP
Sbjct: 323 -----------EAEKIADKIIHECSNDIMQYKDYAILYRGNYQSQILEKTFLKKNIPYDI 371
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
++ E+ +L LR I NP +++A + +L P L + L+ L +
Sbjct: 372 S-TNSSFFSRPEIKDLLSYLRLIVNPDDNHAFIRILNIPHRQIGLTTLNK--LEELASKK 428
Query: 665 KQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW-KIYND 723
++L++ + + +++ E K+ F + SLL D+I KI ND
Sbjct: 429 NKSLFQISNDI-----EIKKILRERTVKKIKDFIYWIKKIIKLSLLKE--DIILDKIIND 481
Query: 724 KFYYDYVGSLPKSEQRQA----NLYALA------LRADNFEKTGFKGLSRFIR--MIDKI 771
Y ++ + K ++ N+Y L+ LR + FEK L + ++ + I
Sbjct: 482 IKYELWLTKILKEPKKIKTSINNIYTLSNWLKEMLRGNEFEKP--MNLLQIVKKMTLRDI 539
Query: 772 LENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNG 831
LE + + ++ PKN V LMT+H SKGLEF VFI+ ++
Sbjct: 540 LEKKIQINEI----PKNRVQLMTLHSSKGLEFSSVFIIGMN------------------- 576
Query: 832 VGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKL 891
E +LP +K + + E+ RL YV MTR+ K+L
Sbjct: 577 --------------EGILPNIK-------------SINNDNIEEERRLTYVGMTRARKEL 609
Query: 892 YL 893
+
Sbjct: 610 FF 611
>gi|54295644|ref|YP_128059.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
gi|53755476|emb|CAH16972.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
Length = 665
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 128/553 (23%), Positives = 227/553 (41%), Gaps = 116/553 (20%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y +A NA +F D+ + +L E+ + + + +K ++VDEYQD+N +Q +++
Sbjct: 170 RYQEALKAYNAVDFDDLIRLPVDLLNEHADVLEYWQNKIRHLLVDEYQDSNTSQYLLVKK 229
Query: 429 LSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
L+ R F +VGD QSIY +R A P+ Q KDF K+I L++N+RS S +L
Sbjct: 230 LAGVRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDFPRL----KIIKLEQNYRSTSRILH 285
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A N + H ++ D H + + + KD+Q+
Sbjct: 286 AANQLIAHNQHLFEKKLWSDLGHGEL----------------LRVVSCKDEQD------- 322
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E + V ++I + ++ D +L + + +GIP GG
Sbjct: 323 --------EAEHVIADLISHKLRNRTKYSDYAILYRGNHQARIFEKVLRHHGIPYHISGG 374
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
Q++ +EV + L+ + N +D A + + +P E L AL +
Sbjct: 375 -QSWFAKLEVRDIFAYLKLLCNEADDAAFLRAITTPKRGIGESSLD--ALGRYAQSRGIS 431
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE--------FSLLNSLYDLIWK 719
LY G ++E ++ K F F W E S+L L ++
Sbjct: 432 LY---------HGSDHLGLSEFVADKQRMIFHDFKLWMEDIKKRISSDSVLEHLRQMVED 482
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYAL-----ALRADNFEKTGFKGLSRFIRMIDKILEN 774
I + + Y+ S K++++ N++ L L E++ +++ I +ID + ++
Sbjct: 483 IGYEAYIYEQCDSPAKAQKKMDNVWELLEWVNRLLNKEPEQSLMDVVNKLI-LIDILEQS 541
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
+DV V LMT+H SKGLEF +V+++
Sbjct: 542 DESSSDV--------VQLMTLHASKGLEFPFVYLVG------------------------ 569
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+EE+LLP +VS+D + E+ RL YV +TR++K L
Sbjct: 570 ---------MEEELLPH-RVSIDD------------DQIEEERRLAYVGITRAQKGLCFT 607
Query: 895 GKGSQEKLGDQYD 907
+ + G+ D
Sbjct: 608 LAKQRRRAGELQD 620
>gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
Length = 797
Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats.
Identities = 121/484 (25%), Positives = 200/484 (41%), Gaps = 94/484 (19%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQ------- 422
Y + Q NA +F D+ F + + ++ +R+ Y ++ V+VDEYQD NH Q
Sbjct: 194 YQRRLRQANALDFDDLIMFTVHLFQQFPEVRETYRRRFRHVLVDEYQDTNHAQYAFIHQL 253
Query: 423 --ERMLELLSNGR-----NRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILL 475
+RM EL + +VGD QSIY FR A+ + DF++ + ILL
Sbjct: 254 CADRMEELDPSAERIEPAELMVVGDADQSIYAFRGANI----RNILDFEQDFPNATSILL 309
Query: 476 KENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDT 535
++N+RS +L A NSV H + D AG + + Y
Sbjct: 310 EQNYRSTQTILTAANSVIGHNQARKPKRLWSD------AGDGERIVGY------------ 351
Query: 536 KDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTF 595
V DD + E + V++EI RL + + + D+ + + ++ + F
Sbjct: 352 ---------VADDEHD----EARFVSEEIDRLTDAKAYRPGDVAVFYRTNAQSRVFEEIF 398
Query: 596 DDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL 655
G+P GG + Y + EV L LR + NP + +L +L +P D A
Sbjct: 399 IRLGMPYKVVGGVRFYERR-EVRDALAYLRLLVNPADQVSLRRILNTPKRGI--GDRAVA 455
Query: 656 ALQNLPDQHKQNLYEKMENARNGQGQQVQLIT---------EALSAKLDAFFETFLSWRE 706
+ L ++ + +E + A + G + +T E L + +D E E
Sbjct: 456 CVNALAERDRTTFWEALRRAEDAPGLATRSLTQIQGFVAMIEELQSMVDG-GERPDVILE 514
Query: 707 FSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEK----------- 755
+L S Y + +D P+ E R NL L A F
Sbjct: 515 TTLARSGYLTALEESDD----------PQDETRLENLAELVAVAREFADDPVAGPSADPA 564
Query: 756 -----TGFKGLSRFIRMIDKILENQNDLADVEVALPKNA--VTLMTIHKSKGLEFKYVFI 808
T GL+ F+ + ++ + + + D + P++A VTLMT+H +KGLEF VF+
Sbjct: 565 DVDAGTVAPGLADFLERV-ALVADADQIPDDD---PEDAGVVTLMTLHTAKGLEFPVVFL 620
Query: 809 LNID 812
++
Sbjct: 621 TGLE 624
>gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
19397]
gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
19397]
gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
Length = 738
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 124/532 (23%), Positives = 231/532 (43%), Gaps = 106/532 (19%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + NA +F D+ + +++ + N + + Y K+ +MVDEYQD N +Q +++LL
Sbjct: 176 YQKKLKTNNALDFDDLIYKTVELFKTNKDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLL 235
Query: 430 S-NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN +VGD Q IY +R AD KD++E K+I L++N+RS+ +L+A
Sbjct: 236 ALVHRNMCVVGDDDQCIYEWRGADISNILNFEKDYKE----AKVIKLEQNYRSKGNILNA 291
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N V + Q + +VL T+++ + V
Sbjct: 292 ANEVIKN---------------------------NSQRKNKVL--RTENENGNKIKVFRA 322
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
+ I E K VA EI ++ + + F D +L + ++ F IP GG
Sbjct: 323 YSDID--EAKFVASEIKKIIKDSERSFNDFAVLYRTNAQSRIFEDVFMKRDIPYRLIGGL 380
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ ++ L+ I+NPL+D +L ++ P + + + + +Q ++ + +
Sbjct: 381 KFYDRK-EIKDLMAYLKLINNPLDDISLRRIINVPKRSIGDATVKK--VQEFANEMDECM 437
Query: 669 YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYD 728
Y + +A Q+ +++ + F S+ S+ LI +I + Y
Sbjct: 438 YSVLLDA-----DQILTLSQRSITSIKKFVSIMNSFIRKKDEISVSALIKEILEETGYLK 492
Query: 729 YVGSL--PKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKI--LENQNDLADVEV 783
+ + P R NL L A +FE+ + K L F+ + + ++N ++ +D
Sbjct: 493 ELKNSKNPDDVSRVENLKELVSAAADFERESEDKSLGAFLEKVALVTDIDNYDENSD--- 549
Query: 784 ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV--GIKYIADMK 841
+V +MT+H +KGLEF VF++ + +NG+ G + ++D K
Sbjct: 550 -----SVAMMTVHSAKGLEFPVVFMVGM-----------------ENGIFPGTQSLSDPK 587
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
E + E RL YVA+TR++++LY+
Sbjct: 588 E------------------------------MEESRRLCYVAITRAKEQLYI 609
>gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
subsp. pallidum str. Nichols]
gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
subsp. pallidum str. Nichols]
Length = 1239
Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats.
Identities = 214/968 (22%), Positives = 361/968 (37%), Gaps = 189/968 (19%)
Query: 335 RLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDIAHFAIQILE 394
RL+ + +E + + Q +P L L S ++++ K + N +D+AH A+Q+L
Sbjct: 336 RLQLVPQMERLHAFFAQ-VPFLVALSSLLELLQARFIRQKRERNCLSHADVAHLAVQVLR 394
Query: 395 ENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNR----------------FMV 438
+ IR Y M+DE+QDNN Q+ +L L+ R F V
Sbjct: 395 QYPEIRVSYKRGIDAFMIDEFQDNNALQKELLFFLAEHEARTAHFLPPAHALCAHKLFFV 454
Query: 439 GDIKQSIYRFRQADPQIFNQ---------KFKDFQEHPEHG------KLILLKENFRSQS 483
GD KQSIY FR AD ++F QE P L L+ N+R+++
Sbjct: 455 GDEKQSIYAFRGADVRVFRSLAGVLTPQVSGASQQELPLSAAAELQPTLQTLRINYRTEA 514
Query: 484 EVLDATNSVFTHLM--DEAVGEILYDDTHQL---------------VAGSSAQKIPYPQN 526
+L+ N +F+H++ E Y+ Q V G + P++
Sbjct: 515 ALLERLNILFSHILRGPSESAENGYEVGFQYMQPARCTAGIEPQFRVIGVDRHRFSRPEH 574
Query: 527 ETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVA-----------KEIIRLHNE--EKV 573
E Q Q + A ED + +S E + A ++R E
Sbjct: 575 EAQHSAARPTPQAGRTGASEDSEDSLSAQETEAWALARAIRAMVDGGTLVRHKGEAPRAC 634
Query: 574 QFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLND 633
+ D+ +L+ S + + +GIP T + + +L LR + P +
Sbjct: 635 TWADVVILLRSADKQARYERALRLWGIPY-TSLQTRGMFCDAPLSDLLAPLRLVLEPADR 693
Query: 634 YALVALLRSPM---------------------FAFDEDDLARLALQNLPDQHKQNLYEKM 672
+ +LR P F++ +L+ A + + + + + ++
Sbjct: 694 HVYAQVLRGPFVRVDDDTLSLLLLPPAPPDAPFSYIPAELSAPAARCV--RAGADFFARV 751
Query: 673 ENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGS 732
+ Q +++ TE L T+L + E D + + Y+ YDY
Sbjct: 752 QQ----QVRRLATNTELL---------TYLWYTEAYGTLLAQDPLARPYH--VIYDYAFE 796
Query: 733 LPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK---NA 789
L + RQ KG+ F+ +D L Q + ++E+ A
Sbjct: 797 LARRADRQG-----------------KGIGEFLDFVDACLSAQERVEELELPCTDRACGA 839
Query: 790 VTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLL 849
V +M++HKSKGLEF V + + + P +++R V Y + L
Sbjct: 840 VQIMSVHKSKGLEFPIVCVPDAGS-------SGPRVMARVGAVHSPY------GYIPRFL 886
Query: 850 PTVKVSMDTLPYQLNKRELRL-ATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDG 908
P + P + +++ R A +E R+LYVA TR+E + + G + D +
Sbjct: 887 PHPE---GVHPIFVQEQDTRARAYRAELRRVLYVAFTRAECHVIVSG---VLPISDGHPA 940
Query: 909 KSENNH-------LPVADREH---YLTFQDWLLAIEAAYAADELHFKTSFITDEDLTEDK 958
+ + LP D L+F LL +AA + + ++ D+
Sbjct: 941 PAVSRSLADICSLLPSGDGSEPPSSLSFFSELLP-ALMHAAPLPPHPSPSVVPAPVSFDE 999
Query: 959 MGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKFY 1018
L QAY RQS A + + AA+ VR P +
Sbjct: 1000 CLPLARPQAYQRALTGSARQSVPQASA----------PRDWYAAV---PVRAPHYYPRLV 1046
Query: 1019 EPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLSEQVSLEDI 1078
+PV Q S P PQ + + G+ VHEL+ ++ S +
Sbjct: 1047 QPVTSLVSPAPGQNSASASPSPLTPQSPRGVE-----FGTHVHELLAQVFQSPAPT---- 1097
Query: 1079 LTALAELSVEENVKKAIQVDKILHFFQTSQLG-KLIQANADKVYREAPF---AMLQADPA 1134
+A SV+ A +++ F S LG + A A + + E F A P
Sbjct: 1098 ---VALHSVQRVDSPAA---RLVACFLHSPLGCRACAAPAHQRFAEFSFLTRAPGNTKPP 1151
Query: 1135 SGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQALSQSYNIQQ 1194
G +Y G ID L + L DYKTD + RY Q+ YA+A+ ++
Sbjct: 1152 HGAEYQA-GTIDLLFLSNGVWHLVDYKTD----YEEHPARYLPQLQHYARAVQDLFSDHP 1206
Query: 1195 VDSYLILL 1202
V ++L L
Sbjct: 1207 VTAFLYYL 1214
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 26 QKRTPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKIL-RGVTIDQLFISTFTVKAA 84
Q EQ A+++S N +V+A AGSGKT V+ R + ++ R + ++++ + TFT KAA
Sbjct: 10 QSLNAEQRRAVFSS-HNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVVLTFTRKAA 68
Query: 85 GELKERLEKKITEQLRLTNDTALKQ-------FL---SEQLLGLQTADIGTMDAFTQKLV 134
E+ R I E LRL +A Q +L E L A I T+DAF+ ++
Sbjct: 69 MEMARR----IYEDLRLCVQSASAQPEPGHEAYLLRAREALARFGEARIMTLDAFSHEIA 124
Query: 135 TQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYR 172
GI+P+F + ++ E L ++ +D F ++R
Sbjct: 125 RVGARFFGIAPDFSLSEE--ENRALAHECAEDFFLEHR 160
>gi|94502048|ref|ZP_01308553.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
gi|94425802|gb|EAT10805.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
Length = 673
Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats.
Identities = 126/555 (22%), Positives = 228/555 (41%), Gaps = 133/555 (23%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRF- 436
NA +F D+ + + N A+R+ + ++VDEYQD N +Q ++++L +F
Sbjct: 182 NAVDFDDLIRIPTVLFQTNQAVREKWQKNTRYLLVDEYQDTNTSQYELVKILVGMHGKFT 241
Query: 437 MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
+VGD QSIY +R A P+ + +DF K+++L++N+RS +L+A N V ++
Sbjct: 242 VVGDDDQSIYAWRGARPENLSLLKQDFPSL----KVVMLEQNYRSTGLILNAANKVISNN 297
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
E V + D + + I K + N E
Sbjct: 298 EHEFVKTLWSDKGYG----------------DAIRIVKCKSEDN---------------E 326
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ +A EII ++ D +L ++ + Y IP G + + KS E
Sbjct: 327 AERIATEIIEHRLRHNGKYRDYAVLFRGNHQSRLMEMKMQQYQIPYKLSGSQSFFAKS-E 385
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENAR 676
+ ++ L+ I NP +D A + ++ P L +L ++ + + A
Sbjct: 386 IKDIMSYLKLIVNPTDDAAFLRIINVPRRQIGPSTLEKLT------EYAGKRHISLLTAI 439
Query: 677 NGQGQQVQLITEALSAKLDAFFETFLSW------REFS--LLNSLYDLIWKIYNDKFYYD 728
G + + AL + F +W R F+ + SL ++I + + + +
Sbjct: 440 TEMGLEQTMSPLALDK-----LQRFGNWINNTTKRCFTEDAVQSLKEMIHDLDYEAWLHQ 494
Query: 729 YVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPK- 787
+ ++E R N++ L DN E RM+DK EN +++ D+E A+ K
Sbjct: 495 TSNTPNQAEARMKNVWFLI---DNIE-----------RMMDKAEENGDEI-DIEDAVSKL 539
Query: 788 ---------------NAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV 832
+ V LMT+H SKGLEF YV+I+
Sbjct: 540 VLRDMLEQQEQEDELDQVQLMTLHASKGLEFPYVWIMG---------------------- 577
Query: 833 GIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLY 892
LEE++LP ++ + T+ E+ RL+YV +TR+++ L
Sbjct: 578 -----------LEEEILP-------------HRNSIEADTIEEERRLMYVGITRAKQNLT 613
Query: 893 LVGKGSQEKLGDQYD 907
L +++ G+Q++
Sbjct: 614 LTLTAKRKQYGEQFE 628
>gi|28211985|ref|NP_782929.1| DNA helicase [Clostridium tetani E88]
gi|28204428|gb|AAO36866.1| DNA helicase [Clostridium tetani E88]
Length = 639
Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 128/537 (23%), Positives = 233/537 (43%), Gaps = 117/537 (21%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + NA +F D+ + +++ ++N+ I + Y DK+ +MVDEYQD N +Q +++LL
Sbjct: 75 YQKKLKNNNALDFDDLIYKTVELFKKNEEILEFYQDKFKYIMVDEYQDTNKSQYELVKLL 134
Query: 430 S-NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ +N +VGD Q IY +R AD + DF++ K I L+EN+RS S +L A
Sbjct: 135 ALKHKNICVVGDDDQCIYAWRGADI----RNILDFEKDYPQVKTIKLEENYRSMSNILSA 190
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N V + + V ++ T + Q + + V
Sbjct: 191 ANDVIKNNSNRKVKKL-----------------------------RTSNSQGEKVKVYRA 221
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
++ I E + V EI +L EE +D ++L + ++ + F IP GG
Sbjct: 222 NSDIE--EAQFVINEIKKLIKEENRTPKDFSILYRTNAQSRIFEEVFMRNKIPYKIVGGL 279
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ ++ L+ I+NPL+D +L ++ P + + + ++N + ++ +
Sbjct: 280 KFYDRK-EIKDIMAYLKLINNPLDDVSLKRIINVPKRGIGKSSIEK--IENFSREMEECI 336
Query: 669 YEKMENARNGQGQQVQLITEALSA--KLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
Y + + + + A S+ K + +F+ ++ ++ L I + Y
Sbjct: 337 YSTLLDI-----DSIGIANRAASSVNKFVSLINSFIRKKDEVKVSVLIQEIIE------Y 385
Query: 727 YDYVGSLPKSEQ-----RQANLYALALRADNFE-KTGFKGLSRFIRMIDKI--LENQNDL 778
Y+ L S+ R NL L A +FE + K LS F+ I + ++N ++
Sbjct: 386 TGYMKELQDSKNIEDLSRIENLKELVSAAVDFEISSEDKTLSAFLEQIALVSDIDNYDEQ 445
Query: 779 ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV--GIKY 836
+D AV LMT+H +KGLEF VF++ + +NG+ G +
Sbjct: 446 SD--------AVVLMTVHSAKGLEFPAVFMVGM-----------------ENGIFPGTQS 480
Query: 837 IADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
+ D+ E + E RL YV +TR+++KLY+
Sbjct: 481 LDDIDE------------------------------MEESRRLCYVGITRAKEKLYM 507
>gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
Length = 760
Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 124/540 (22%), Positives = 227/540 (42%), Gaps = 102/540 (18%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + NA +F D+ +++ +++ + + Y +K+ +MVDEYQD N TQ +++++L
Sbjct: 176 YQKKLKNSNALDFDDLIFKTVELFKKHPEVLEFYQNKFKYIMVDEYQDTNKTQYQLVKML 235
Query: 430 SNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN F+VGD Q IY++R AD + DF++ K++ L+EN+RS++ +L+A
Sbjct: 236 AAAHRNIFVVGDDDQCIYQWRGADI----KNILDFEKDYPEAKVVKLEENYRSKANILNA 291
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNET--QVLIYDTKDQQNQDLAVE 546
N+V H K+ QNE ++ IY ++ L
Sbjct: 292 ANTVIKH------------------NSQRKNKVLRTQNENGEKIKIYRAYSDMDEGL--- 330
Query: 547 DDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDG 606
++ EI RL +E ++D +L + ++ F IP G
Sbjct: 331 ------------FISNEIKRLIKKENRSYKDFAILYRTNAQSRVFEDVFMKRDIPYRIIG 378
Query: 607 GEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQ 666
G + Y + E+ + L+ I+N +D +L ++ P A +++ +Q+ + +
Sbjct: 379 GLKFYDRK-EIKDITAYLKFINNLQDDISLKRIINVPKRAIGAATVSK--IQDFANYMDE 435
Query: 667 NLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFY 726
+Y + + N G + I+ K + F ++ S+ +LI +I Y
Sbjct: 436 CMYSVLLDVENIPGLSKRSISSI--NKFTSLINGFTRTKDKV---SVSNLIQEILESTGY 490
Query: 727 YDYVGSLPKSE--QRQANLYALALRADNFEKTGF-KGLSRFIRMIDKILENQNDLADVEV 783
+ + E R N+ L A FE T K LS F+ I + + N D +
Sbjct: 491 MKELKDSNEIEDISRIENIKELVSAAVEFENTSEDKSLSAFLEKITLVSDVDNYDEDTDT 550
Query: 784 ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKEE 843
+ +MT+H +KGLEF VF++ + +NG I +
Sbjct: 551 TV------MMTLHSAKGLEFPVVFMVGM-----------------ENG-----IFPGAQS 582
Query: 844 LEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLG 903
LE A + E RL YV +TR++++LY+ +++ G
Sbjct: 583 LEN-----------------------FAEMEESRRLCYVGITRAKEQLYMTSASTRKVFG 619
>gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
Length = 658
Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats.
Identities = 134/548 (24%), Positives = 223/548 (40%), Gaps = 133/548 (24%)
Query: 378 NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELLSNGRNRFM 437
NA +F D+ +QILE +D + + ++ ++VDE QD N Q R+L++L++ R F
Sbjct: 177 NAVDFDDLIRLPVQILETSDQVAMAWRERIGYLLVDECQDTNDAQYRLLKVLASPRGNFT 236
Query: 438 -VGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHL 496
VGD QSIY +R A+ + Q +D+ + K+I L++N+R + VL A N++ H
Sbjct: 237 CVGDDDQSIYAWRGANAENLMQLERDYPQL----KVIKLEQNYRCPNRVLRAANALIAH- 291
Query: 497 MDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGE 556
P + L D KD + + DS E
Sbjct: 292 --------------------------NPHAHLKTLWSDQKDGERIRIWECRDSEH----E 321
Query: 557 VKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVE 616
+ +A EI L + ++V + D +L ++ + + IP GG +L+ E
Sbjct: 322 AEKIAAEISYLGDAKQVPWSDFCILFRGNFQSRPLEKALQLLRIPYHLTGGTA-FLERQE 380
Query: 617 VMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARL-------------------AL 657
V +L LR + NP +D A + ++SP LA+L AL
Sbjct: 381 VKNLLSWLRLLVNPDDDAAFLRAVQSPKREVGSTSLAKLAELAATKQMPMSRAAESLGAL 440
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLI 717
Q LP + L + + R + Q ++ + L +L RE S
Sbjct: 441 QQLPARAANGLNKFTDILRELRQQVSRVSSAELVRRLAEVSGLLTELREQS--------- 491
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQND 777
ND+ Y ++R+ N+ L A+ FE F G S + L ++ND
Sbjct: 492 ----NDEASY---------QRRKRNVEEL---AEWFEGGPF-GASVGDLVSQLALLSRND 534
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYI 837
D N V +MT+H SKG EF+YVFI ++GV
Sbjct: 535 KDD-----GGNQVRMMTLHASKGSEFRYVFIAGC-----------------EDGV----- 567
Query: 838 ADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKG 897
LP++++ E + E+ RLLYV +TR++++L++
Sbjct: 568 ---------------------LPHEVSLEE---GNVQEERRLLYVGITRAKEQLWMSYSK 603
Query: 898 SQEKLGDQ 905
+ G++
Sbjct: 604 CARRFGER 611
>gi|68054841|ref|ZP_00538991.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
gi|68008758|gb|EAM87982.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
Length = 741
Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats.
Identities = 113/454 (24%), Positives = 195/454 (42%), Gaps = 56/454 (12%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y + NA +F D+ ++ ++N + Y K+ + VDEYQD N Q ++
Sbjct: 178 KGYEAVLRRNNALDFDDLIGKTTELFKQNPDVLSFYQRKFQYIHVDEYQDTNKAQYDLVN 237
Query: 428 LLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL+ +N +VGD QSIYR+R AD I N F+E K+ILL++N+RS +L
Sbjct: 238 LLAAAHQNLCVVGDSDQSIYRWRGAD--IAN--ILSFEEDYPTAKVILLEQNYRSSKRIL 293
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQD--LA 544
DA N V Q + +K+ E + LI T + + ++
Sbjct: 294 DAANHVI-----------------QNNSTRKDKKLWTENAEGEKLIVHTAENEREEAFYI 336
Query: 545 VEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVT 604
V++ N + G ++ D+ +L + ++ I +T +P
Sbjct: 337 VQEIRNALRYG-----------------MKLNDVAILYRTNAQSRAIEETLLKSNVPYKM 379
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
GG + Y + E+ +L LR I NP D + ++ P + + L++ D
Sbjct: 380 IGGTKFYDRK-EIKDVLAYLRLISNPNEDLSFARIVNEPKRGIGATTIDK--LRDFADLQ 436
Query: 665 KQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDK 724
+L E + + ++ I +AKL F L ++ SL +L+ ++
Sbjct: 437 GVSLMEAIRDI------ELSSIAPKTAAKLTDFRTMILGLQQMQEFISLSELVEEVLEKT 490
Query: 725 FYYDYV--GSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDLADVE 782
Y + +++ R N+ A NFEK K + I L + +ADV+
Sbjct: 491 GYRQVLKEDKTLEAQSRLENINEFITVAQNFEKETEKADPE-DQTIIAFLTDLTLVADVD 549
Query: 783 VALPKN---AVTLMTIHKSKGLEFKYVFILNIDK 813
+ VTLMT+H +KGLEF VF++ +++
Sbjct: 550 SLDESDLGEQVTLMTLHSAKGLEFPIVFLIGMEE 583
>gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
Length = 838
Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats.
Identities = 133/525 (25%), Positives = 220/525 (41%), Gaps = 85/525 (16%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERML-EL 428
Y + Q NA +F DI + +L+ + + Y ++ +MVDEYQD NH Q +++ EL
Sbjct: 263 YQRRLRQANALDFDDIIMLTVHMLQAFPDVAEHYRRRFRHIMVDEYQDTNHAQYQLIREL 322
Query: 429 LSNGRNR----------FMVGDIKQSIYRFRQADPQIFNQKFKDFQ-EHPEHGKLILLKE 477
+ + R +VGD QSIY FR A + +F+ ++PE + ILL+
Sbjct: 323 VGSDEKRGEHSVEPSELVVVGDADQSIYAFRGATI----RNIVEFEVDYPE-ARTILLER 377
Query: 478 NFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKD 537
N+RS +L A N+V + D +GS A I Y
Sbjct: 378 NYRSTQTILTAANAVIARNESRRKKNLWTD------SGSGAPIIGY-------------- 417
Query: 538 QQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDD 597
V D+ + E VA+ I +L +E V+ D+ + + ++ + + F
Sbjct: 418 -------VGDNEHD----EASFVARTIDKLGDEHGVKPGDVAVFYRTNAQSRALEEVFVR 466
Query: 598 YGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLAL 657
G+P GG + Y + EV L LR + NP + L +L P D A +
Sbjct: 467 VGLPYKVVGGTRFYERR-EVKDALAYLRVLSNPADTVNLRRILNVPKRGI--GDRAEAVV 523
Query: 658 QNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE------FSLLN 711
L ++ + + E + + G + I A A E + R+ LL
Sbjct: 524 AALAERERISFVEALGRPEDAPGIATRSI--ACIKGFTALLEDLGTVRDDDNAGVADLLE 581
Query: 712 SLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFE----KTG-FKGLSRFIR 766
++ D + + +D P+ E R NL L A F+ +TG L F+
Sbjct: 582 AIVDKSGYLAELRASHD-----PQDETRVENLAELVAVAREFDEARAETGEVNSLEDFLE 636
Query: 767 MIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLIL 826
+ ++ + +++ D A + VTLMT+H +KGLEF VF+ ++D T P +
Sbjct: 637 QV-SLVADADEIPDSAEAEEQGVVTLMTLHTAKGLEFPVVFLT------GMEDGTFPHLR 689
Query: 827 SRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLA 871
S +AD KE EE+ L V ++ L++ +R A
Sbjct: 690 S---------LADPKELEEERRLAYVGITRARERLHLSRAAVRSA 725
>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
Length = 799
Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats.
Identities = 129/566 (22%), Positives = 218/566 (38%), Gaps = 120/566 (21%)
Query: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423
L+ ++Y + NAF+F D+ + + I Y ++ ++VDEYQD NH Q
Sbjct: 191 LEVFRRYTRGLSDANAFDFDDLIGQTVYLFRAFPHIAATYQRRFKHILVDEYQDTNHAQY 250
Query: 424 RMLE-----------------LLSNGRNRF------MVGDIKQSIYRFRQADPQIFNQKF 460
++ L+ N +VGD QSIY FR AD + +
Sbjct: 251 SLIRELTRPPAPEQFETSPGVLVQGSTNELEAASLTVVGDSDQSIYAFRGADIRNIVEFE 310
Query: 461 KDFQEHPEHGKLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQK 520
+DF +ILL++N+RS +LDA N+V +H D D + K
Sbjct: 311 RDF----PRSTVILLEQNYRSTQTILDAANAVISHNFDR-------KDKKLFTTVGAGDK 359
Query: 521 IPYPQNETQVLIYDTKDQQNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITL 580
I Y D E + VA EI ++H +E V ++D+ +
Sbjct: 360 I------VGFTGYSGHD------------------EAQFVADEIQKMH-DEGVAYKDVAV 394
Query: 581 LVSSRTRNDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALL 640
+ ++ + + F +P GG + Y ++ E+ L ++ NP + AL ++
Sbjct: 395 FYRTNSQTRALEEIFIRAALPYRVLGGTKFYERA-EIKDAFGYLIAVANPADPLALRRIM 453
Query: 641 RSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARN-GQGQQVQLITEALSAKLDAFFE 699
+P A ALQ D L + M NA G G +V L+ LD
Sbjct: 454 NTPKRGIGPATEA--ALQAWADDRGMTLRDAMRNAGELGLGPKVTKAIVDLARLLDEVMA 511
Query: 700 TFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFK 759
+ + +L L + + + D P+ E R N+ L F K
Sbjct: 512 KVETAKPAEILTELLERSGYVRVLRSSLD-----PQDEARAENVDELIAVTKEFGKNNPD 566
Query: 760 G-LSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQ 818
G L F+ + ++ +DL D V+LMT+H +KGLE+ VF+ +++
Sbjct: 567 GTLIDFLTEV-SLVAAADDLDD-----SSGTVSLMTLHTAKGLEYDAVFLTGVEE----- 615
Query: 819 DMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMR 878
D LP++++ E +E+ R
Sbjct: 616 --------------------------------------DLLPHRMSANE--PGGPAEERR 635
Query: 879 LLYVAMTRSEKKLYLVGKGSQEKLGD 904
L YV +TR+ K+L+L ++ + G+
Sbjct: 636 LFYVGITRARKRLFLSLAMTRAQFGE 661
>gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
Langeland]
gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
Langeland]
Length = 738
Score = 103 bits (257), Expect = 7e-20, Method: Composition-based stats.
Identities = 123/532 (23%), Positives = 231/532 (43%), Gaps = 106/532 (19%)
Query: 370 YLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL 429
Y + NA +F D+ + +++ + N + + Y K+ +MVDEYQD N +Q +++LL
Sbjct: 176 YQKKLKTNNALDFDDLIYKTVELFKTNKDVLEFYQRKFKYIMVDEYQDTNKSQYELVKLL 235
Query: 430 S-NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDA 488
+ RN +VGD Q IY +R AD KD++E K+I L++N+RS+ +L+A
Sbjct: 236 ALVHRNMCVVGDDDQCIYEWRGADISNILNFEKDYKE----AKVIKLEQNYRSKGNILNA 291
Query: 489 TNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDD 548
N V + Q + +VL T+++ + V
Sbjct: 292 ANEVIKN---------------------------NSQRKNKVL--RTENENGNKIKVFRA 322
Query: 549 SNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGGE 608
+ I E K VA EI ++ + + F D +L + ++ F IP GG
Sbjct: 323 YSDID--EAKFVASEIKKIIKDSERSFNDFAVLYRTNAQSRIFEDVFMKRDIPYRLIGGL 380
Query: 609 QNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNL 668
+ Y + E+ ++ L+ I+NPL+D +L ++ P + + + + +Q ++ + +
Sbjct: 381 KFYDRK-EIKDLMAYLKLINNPLDDISLRRIINVPKRSIGDATVKK--VQEFANEMDECM 437
Query: 669 YEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYD 728
Y + +A Q+ +++ + F S+ S+ +I +I + Y
Sbjct: 438 YSVLLDA-----DQILTLSQRSITSIKKFVSIMNSFIRKKDEISVSAIIKEILEETGYLK 492
Query: 729 YVGSL--PKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKI--LENQNDLADVEV 783
+ + P R NL L A +FE+ + K L F+ + + ++N ++ +D
Sbjct: 493 ELKNSKNPDDVSRVENLKELVSAAADFERESEDKSLGAFLEKVALVTDIDNYDENSD--- 549
Query: 784 ALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGV--GIKYIADMK 841
+V +MT+H +KGLEF VF++ + +NG+ G + ++D K
Sbjct: 550 -----SVAMMTVHSAKGLEFPVVFMVGM-----------------ENGIFPGTQSLSDPK 587
Query: 842 EELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
E + E RL YVA+TR++++LY+
Sbjct: 588 E------------------------------MEESRRLCYVAITRAKEQLYI 609
>gi|148361128|ref|YP_001252335.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
gi|148282901|gb|ABQ56989.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
Length = 665
Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats.
Identities = 127/553 (22%), Positives = 226/553 (40%), Gaps = 116/553 (20%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y +A NA +F D+ + +L ++ + + + +K ++VDEYQD+N +Q +++
Sbjct: 170 RYQEALKAYNAVDFDDLIRLPVDLLNDHADVLEYWQNKIRHLLVDEYQDSNTSQYLLVKK 229
Query: 429 LSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
L+ R F +VGD QSIY +R A P+ Q KDF K+I L++N+RS S +L
Sbjct: 230 LAGVRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDFPRL----KIIKLEQNYRSTSRILH 285
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A N + H ++ D H + + + KD+Q+
Sbjct: 286 AANHLIAHNQHLFEKKLWSDLGHGEL----------------LRVVSCKDEQD------- 322
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E + V ++I + + D +L + + +GIP GG
Sbjct: 323 --------EAEHVIADLISHKLRNRTNYSDYAILYRGNHQARIFEKVLRHHGIPYHISGG 374
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
Q++ +EV + L+ + N +D A + + +P E L AL +
Sbjct: 375 -QSWFAKLEVRDIFAYLKLLCNEADDAAFLRAITTPKRGIGESSLD--ALGRYAQSRGIS 431
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE--------FSLLNSLYDLIWK 719
LY G ++E ++ K F F W E S+L L ++
Sbjct: 432 LY---------HGSDHLALSEFVADKQRMIFHDFKLWMEDIKKRISSDSVLEHLRQMVED 482
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYAL-----ALRADNFEKTGFKGLSRFIRMIDKILEN 774
I + + Y+ S K++++ N++ L L E++ +++ I +ID + ++
Sbjct: 483 IGYEAYIYEQCDSPAKAQKKMDNVWELLEWVNRLLNKEPEQSLMDVVNKLI-LIDILEQS 541
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
+DV V LMT+H SKGLEF +V+++
Sbjct: 542 DESSSDV--------VQLMTLHASKGLEFPFVYLVG------------------------ 569
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+EE+LLP +VS+D + E+ RL YV +TR++K L
Sbjct: 570 ---------MEEELLPH-RVSIDD------------DQIEEERRLAYVGITRAQKGLCFT 607
Query: 895 GKGSQEKLGDQYD 907
+ + G+ D
Sbjct: 608 LAKQRRRAGELQD 620
>gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella
tularensis subsp. tularensis WY96-3418]
gi|134050072|gb|ABO47143.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella
tularensis subsp. tularensis WY96-3418]
Length = 671
Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats.
Identities = 127/558 (22%), Positives = 241/558 (43%), Gaps = 121/558 (21%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
++Y + N+F+F D+ IQ+ + I++L+ DK+ +++DEYQD N +Q ++L+
Sbjct: 169 QEYQKYLKSYNSFDFDDLIFQPIQLFRNHSNIQKLWADKFRYILIDEYQDTNESQYQLLK 228
Query: 428 LLSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L+ G+N+F +VGD QSIY +R + P+ +DF + K+I L++N+RS +L
Sbjct: 229 YLTLGKNKFTVVGDDDQSIYAWRGSRPENLRHLQEDFADL----KVIKLEQNYRSTGRIL 284
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+ N +++ +++H I+D K N+D
Sbjct: 285 NVAN------------KLIENNSH---------------------IFDKKLWSNKDYG-- 309
Query: 547 DDSNQISL----GEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPL 602
+ ISL E + +A +I + K + D +L+ S + + + + IP
Sbjct: 310 EQIKVISLINDEDEAQFIASDIFFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHKIPY 369
Query: 603 VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPD 662
GG ++ E+ ++ LR I NP +D A + ++ +P + +L
Sbjct: 370 TISGG-SSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLG--EYAS 426
Query: 663 QHKQNLYE---KMENARNGQGQQVQLIT-EALSAKLDAFFETFLSWREF-SLLNSLYDLI 717
QH + + +EN + LI+ + L T +S +E +++NS D
Sbjct: 427 QHHCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFID-- 484
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALA-LRADNFEKTGFKGLSRFIRMIDKIL---- 772
I ++ D S ++E R AN+ + + E + GL +++K+L
Sbjct: 485 -NISYRQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDI 543
Query: 773 -----ENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
E++ND N V ++T+H SKGLEFK V+I+
Sbjct: 544 LDRDNEDKND----------NQVQIITMHASKGLEFKKVYIMG----------------- 576
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+EE +LP +++ + ++ ++ RL YVA+TR+
Sbjct: 577 ----------------MEEGILP-------------HQQSIEDDSIEDERRLAYVAITRA 607
Query: 888 EKKLYLVGKGSQEKLGDQ 905
+ L + ++K G++
Sbjct: 608 RENLTITMTKHRKKFGEK 625
>gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
tularensis subsp. novicida U112]
gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
tularensis subsp. novicida U112]
gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida
GA99-3549]
Length = 671
Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats.
Identities = 126/558 (22%), Positives = 241/558 (43%), Gaps = 121/558 (21%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
++Y + N+F+F D+ IQ+ + I++L+ DK+ +++DEYQD N +Q ++L+
Sbjct: 169 QEYQKYLKSYNSFDFDDLIFQPIQLFRNHSNIQKLWADKFRYILIDEYQDTNESQYQLLK 228
Query: 428 LLSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L+ G+N+F +VGD QSIY +R + P+ +DF + K+I L++N+RS +L
Sbjct: 229 YLTLGKNKFTVVGDDDQSIYAWRGSRPENLRHLQEDFADL----KVIKLEQNYRSTGRIL 284
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+ N +++ +++H I+D K N+D
Sbjct: 285 NVAN------------KLIENNSH---------------------IFDKKLWSNKDYG-- 309
Query: 547 DDSNQISL----GEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPL 602
+ ISL E + +A +I + K + D +L+ S + + + + IP
Sbjct: 310 EQIKVISLINDEDEAQFIASDIFFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHKIPY 369
Query: 603 VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPD 662
GG ++ E+ ++ LR I NP +D A + ++ +P + +L
Sbjct: 370 TISGG-SSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLG--EYAS 426
Query: 663 QHKQNLYE---KMENARNGQGQQVQLIT-EALSAKLDAFFETFLSWREF-SLLNSLYDLI 717
QH + + +EN + L++ + L T +S +E +++NS D
Sbjct: 427 QHHCSFFHTLYSLENFELRDFTKRNLVSFKDLILNTQQQINTSISVQELKNIINSFID-- 484
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALA-LRADNFEKTGFKGLSRFIRMIDKIL---- 772
I ++ D S ++E R AN+ + + E + GL +++K+L
Sbjct: 485 -NISYRQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDI 543
Query: 773 -----ENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
E++ND N V ++T+H SKGLEFK V+I+
Sbjct: 544 LDRDNEDKND----------NQVQIITMHASKGLEFKKVYIMG----------------- 576
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+EE +LP +++ + ++ ++ RL YVA+TR+
Sbjct: 577 ----------------MEEGILP-------------HQQSIEDDSIEDERRLAYVAITRA 607
Query: 888 EKKLYLVGKGSQEKLGDQ 905
+ L + ++K G++
Sbjct: 608 RENLTITMTKHRKKFGEK 625
>gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
Length = 775
Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats.
Identities = 113/462 (24%), Positives = 198/462 (42%), Gaps = 70/462 (15%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y + + A +F D+ +++ ++N + Y +Y + VDEYQD NH Q ++++
Sbjct: 179 KAYQEELRRSEAMDFDDLIMMTLRLFDKNPDVLAYYQQRYQYIHVDEYQDTNHAQYQLVK 238
Query: 428 LL-SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL S +N +VGD QSIY +R AD Q DF++ K++LL+EN+RS ++L
Sbjct: 239 LLASRFKNICVVGDADQSIYGWRGAD----MQNILDFEKDYPEAKVVLLEENYRSTKKIL 294
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE--TQVLIYDTKDQQNQDLA 544
A N V + + ++ + QN+ Q++ Y D+++
Sbjct: 295 QAANEVIKNNRNRRPKKL------------------WTQNDEGEQIVYYRANDERD---- 332
Query: 545 VEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVT 604
E VA I + E+ F+D +L + ++ I + IP
Sbjct: 333 -----------EAVFVASTIDNIVREKVKNFKDFAILYRTNAQSRTIEEALLKSNIPYTM 381
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
GG + Y + E+ ++ L I N ++ + ++ P L + L+N +
Sbjct: 382 VGGTKFYSRK-EIRDVISYLNLIANTSDNISFERVVNEPKRGVGPGTLEK--LRNFAYEQ 438
Query: 665 KQNLYEKMENARNG--QGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYN 722
+L + N +G+ Q + + F L+ R+ S+ D + I +
Sbjct: 439 NMSLLDASANIMLSPIKGKAAQGVYD--------FANMILNLRDQLDGLSITDTVEAILD 490
Query: 723 DKFYYDYVG--SLPKSEQRQANLYALALRADNF---------EKTGFKGLSRFIRMIDKI 771
Y D + +S+ R N+ NF ++TG L RF+ D
Sbjct: 491 KSGYLDALSMQQTLESQSRIENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLN--DLA 548
Query: 772 LENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
L D +VE A VTLMT+H +KGLEF VF++ +++
Sbjct: 549 LIADTDDGEVEAA----EVTLMTLHAAKGLEFPVVFLIGMEE 586
>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
Length = 724
Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats.
Identities = 110/456 (24%), Positives = 205/456 (44%), Gaps = 55/456 (12%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
D ++Y Q ++ ++ +F D+ +Q+ + + Q Y K+ + +DEYQD N Q
Sbjct: 175 DVYQEYQQRLLRNHSLDFDDLIMTTLQLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYT 234
Query: 425 MLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+++ L+ +N VGD QSIYR+R AD Q F+ + K+ILL++N+RS
Sbjct: 235 LVKKLAERFQNICAVGDADQSIYRWRGADIQ----NILSFERDYPNAKVILLEQNYRSTK 290
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+L A N V H ++ + ++ + I Y Y+ ++ +
Sbjct: 291 RILQAANEVIEHNVNRKPKRLWTEN-------PEGKPITY---------YEAMNEAD--- 331
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLV 603
E + VA I ++ D +L + ++ I + IP
Sbjct: 332 ------------EAQFVAGRIQEAIESGARRYSDFAVLYRTNAQSRVIEEMLLKANIPYQ 379
Query: 604 TDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP---MFAFDEDDLARLALQNL 660
GG + Y + E+ +L LR I NP +D +L+ ++ P + A D L R A +
Sbjct: 380 IVGGLKFYDRK-EIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAE-- 436
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
H+ +L+E + G+ + + L +A A L AF W + S+ +L+ ++
Sbjct: 437 ---HELSLFEAL-----GELEMIGLSAKATGA-LAAFRGQLEQWTQLQEYVSVTELVEEV 487
Query: 721 YNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKILENQND 777
+ Y D + + +++ R NL +FE + K L F+ + ++ + ++
Sbjct: 488 LDKSGYRDMLKAERTIEAQSRLENLDEFLSVTKHFENASDDKSLIAFLTDL-ALISDLDE 546
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
L + +AV LMT+H +KGLEF VF++ +++
Sbjct: 547 LNGNDQTEEGDAVVLMTLHAAKGLEFPVVFLIGMEE 582
>gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella tularensis subsp.
novicida GA99-3548]
Length = 671
Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats.
Identities = 126/558 (22%), Positives = 241/558 (43%), Gaps = 121/558 (21%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
++Y + N+F+F D+ IQ+ + I++L+ DK+ +++DEYQD N +Q ++L+
Sbjct: 169 QEYQKYLKSYNSFDFDDLIFQPIQLFRNHSNIQKLWADKFRYILIDEYQDTNESQYQLLK 228
Query: 428 LLSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
L+ G+N+F +VGD QSIY +R + P+ +DF + K+I L++N+RS +L
Sbjct: 229 YLTLGKNKFTVVGDDDQSIYAWRGSKPENLRHLQEDFADL----KVIKLEQNYRSTGRIL 284
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVE 546
+ N +++ +++H I+D K N+D
Sbjct: 285 NVAN------------KLIENNSH---------------------IFDKKLWSNKDYG-- 309
Query: 547 DDSNQISL----GEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPL 602
+ ISL E + +A +I + K + D +L+ S + + + + IP
Sbjct: 310 EQIKVISLINDEDEAQFIASDIFFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHKIPY 369
Query: 603 VTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPD 662
GG ++ E+ ++ LR I NP +D A + ++ +P + +L
Sbjct: 370 TISGG-SSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEH--AS 426
Query: 663 QHKQNLYE---KMENARNGQGQQVQLIT-EALSAKLDAFFETFLSWREF-SLLNSLYDLI 717
QH + + +EN + L++ + L T +S +E +++NS D
Sbjct: 427 QHHCSFFHTLYSLENFELRDFTKKNLVSFKDLILNTQQQINTSISVQELKNIINSFID-- 484
Query: 718 WKIYNDKFYYDYVGSLPKSEQRQANLYALA-LRADNFEKTGFKGLSRFIRMIDKIL---- 772
I ++ D S ++E R AN+ + + E + GL +++K+L
Sbjct: 485 -NISYRQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDI 543
Query: 773 -----ENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILS 827
E++ND N V ++T+H SKGLEFK V+I+
Sbjct: 544 LDRDNEDKND----------NQVQIITMHASKGLEFKKVYIMG----------------- 576
Query: 828 RQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRS 887
+EE +LP +++ + ++ ++ RL YVA+TR+
Sbjct: 577 ----------------MEEGILP-------------HQQSIEDDSIEDERRLAYVAITRA 607
Query: 888 EKKLYLVGKGSQEKLGDQ 905
+ L + ++K G++
Sbjct: 608 RENLTITMTKHRKKFGEK 625
>gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
Length = 724
Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats.
Identities = 105/456 (23%), Positives = 205/456 (44%), Gaps = 55/456 (12%)
Query: 365 DFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQER 424
D ++Y Q ++ ++ +F D+ I + + + Q Y K+ + +DEYQD N Q
Sbjct: 175 DVYQEYQQRLLRNHSLDFDDLIMTTIHLFDRVPDVLQYYQYKFQYIHIDEYQDTNRAQYT 234
Query: 425 MLELLSNG-RNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQS 483
+++ L++ +N VGD QSIYR+R AD + F+ + K+ILL++N+RS
Sbjct: 235 LVKKLADRFQNICAVGDADQSIYRWRGADIR----NILSFERDYPNAKVILLEQNYRSTK 290
Query: 484 EVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDL 543
+L A N V H ++ + T++ + + +
Sbjct: 291 RILQAANEVIAHNVNRKPKRLW-----------------------------TENPEGKPI 321
Query: 544 AVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLV 603
+ N++ E + VA+ I + ++ D +L + ++ I + F IP
Sbjct: 322 VYYEAMNEVD--EAQFVARRIQEAVESGERRYRDFAVLYRTNAQSRVIEEMFLKANIPYQ 379
Query: 604 TDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSP---MFAFDEDDLARLALQNL 660
GG + Y + E+ +L LR I NP +D +L+ ++ P + A D L R A +
Sbjct: 380 IVGGLKFYDRK-EIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAE-- 436
Query: 661 PDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKI 720
H+ +L+E + G+ + + + A L AF W + + +L+ ++
Sbjct: 437 ---HELSLFEAL-----GELEMIGFSAKTAGA-LAAFRGQLEQWTQLQEYVPVTELVEEV 487
Query: 721 YNDKFYYDYVGS--LPKSEQRQANLYALALRADNFEK-TGFKGLSRFIRMIDKILENQND 777
+ Y + + + +++ R NL +FE + K L F+ + ++ + ++
Sbjct: 488 LDQSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDL-ALISDLDE 546
Query: 778 LADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
L + A +AV MT+H +KGLEF VF++ +++
Sbjct: 547 LNGTDQAAEGDAVVFMTLHAAKGLEFPVVFLIGMEE 582
>gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
Length = 775
Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats.
Identities = 113/462 (24%), Positives = 198/462 (42%), Gaps = 70/462 (15%)
Query: 368 KQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLE 427
K Y + + A +F D+ +++ ++N + Y +Y + VDEYQD NH Q ++++
Sbjct: 179 KAYQEELRRSEAMDFDDLIMMTLRLFDKNPDVLAYYQQRYQYIHVDEYQDTNHAQYQLVK 238
Query: 428 LL-SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVL 486
LL S +N +VGD QSIY +R AD Q DF++ K++LL+EN+RS ++L
Sbjct: 239 LLASRFKNICVVGDADQSIYGWRGAD----MQNILDFEKDYPEAKVVLLEENYRSTKKIL 294
Query: 487 DATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNE--TQVLIYDTKDQQNQDLA 544
A N V + + ++ + QN+ Q++ Y D+++
Sbjct: 295 QAANEVIKNNRNRRPKKL------------------WTQNDEGEQIVYYRANDERD---- 332
Query: 545 VEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVT 604
E VA I + E+ F+D +L + ++ I + IP
Sbjct: 333 -----------EAVFVASTIDNIVREKVKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTM 381
Query: 605 DGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQH 664
GG + Y + E+ ++ L I N ++ + ++ P L + L+N +
Sbjct: 382 VGGTKFYSRK-EIRDVISYLNLIANTSDNISFERVVNEPKRGVGPGTLEK--LRNFAYEQ 438
Query: 665 KQNLYEKMENARNG--QGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYN 722
+L + N +G+ Q + + F L+ R+ S+ D + I +
Sbjct: 439 NMSLLDASANIMLSPIKGKAAQGVYD--------FANMILNLRDQLDGLSITDTVEAILD 490
Query: 723 DKFYYDYVG--SLPKSEQRQANLYALALRADNF---------EKTGFKGLSRFIRMIDKI 771
Y D + +S+ R N+ NF ++TG L RF+ D
Sbjct: 491 KSGYLDALSMQQTLESQSRIENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLN--DLA 548
Query: 772 LENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDK 813
L D +VE A VTLMT+H +KGLEF VF++ +++
Sbjct: 549 LIADTDDGEVEAA----EVTLMTLHAAKGLEFPVVFLIGMEE 586
>gi|52843012|ref|YP_096811.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52630123|gb|AAU28864.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 665
Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats.
Identities = 127/553 (22%), Positives = 226/553 (40%), Gaps = 116/553 (20%)
Query: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLEL 428
+Y +A NA +F D+ + +L ++ + + + +K ++VDEYQD+N +Q +++
Sbjct: 170 RYQEALKVYNAVDFDDLIRLPVDLLNDHADVLEYWQNKIRHLLVDEYQDSNTSQYLLVKK 229
Query: 429 LSNGRNRF-MVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLD 487
L+ R F +VGD QSIY +R A P+ Q KDF K+I L++N+RS S +L
Sbjct: 230 LAGVRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDFPRL----KIIKLEQNYRSTSRILH 285
Query: 488 ATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVED 547
A N + H ++ D H + + + KD+Q+
Sbjct: 286 AANHLIAHNQHLFEKKLWSDLGHGEL----------------LRVVSCKDEQD------- 322
Query: 548 DSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDYGIPLVTDGG 607
E + V ++I + + D +L + + +GIP GG
Sbjct: 323 --------EAEHVIADLISHKLRNRTNYSDYAILYRGNHQARIFEKVLRHHGIPYHISGG 374
Query: 608 EQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQN 667
Q++ +EV + L+ + N +D A + + +P E L AL +
Sbjct: 375 -QSWFAKLEVRDIFAYLKLLCNEADDAAFLRAITTPKRGIGESSLD--ALGRYAQSRGIS 431
Query: 668 LYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRE--------FSLLNSLYDLIWK 719
LY G ++E ++ K F F W E S+L L ++
Sbjct: 432 LY---------HGSDHLALSEFVADKQRMIFHDFKLWMEDIKKRISSDSVLEHLRQMVED 482
Query: 720 IYNDKFYYDYVGSLPKSEQRQANLYAL-----ALRADNFEKTGFKGLSRFIRMIDKILEN 774
I + + Y+ S K++++ N++ L L E++ +++ I +ID + ++
Sbjct: 483 IGYEAYIYEQCDSPAKAQKKMDNVWELLEWVNRLLNKEPEQSLMDVVNKLI-LIDILEQS 541
Query: 775 QNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGI 834
+DV V LMT+H SKGLEF +V+++
Sbjct: 542 DESSSDV--------VQLMTLHASKGLEFPFVYLVG------------------------ 569
Query: 835 KYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLV 894
+EE+LLP +VS+D + E+ RL YV +TR++K L
Sbjct: 570 ---------MEEELLPH-RVSIDD------------DQIEEERRLAYVGITRAQKGLCFT 607
Query: 895 GKGSQEKLGDQYD 907
+ + G+ D
Sbjct: 608 LAKQRRRAGELQD 620
>gi|46445668|ref|YP_007033.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats.
Identities = 131/531 (24%), Positives = 218/531 (41%), Gaps = 102/531 (19%)
Query: 372 QAKMQE-NAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQERMLELL- 429
Q K+QE A +F D+ +I E ++ Y D++ V++DEYQD N Q M LL
Sbjct: 209 QKKLQEYQAVDFDDLLFLTAKIWREYPSVLNYYQDRWPFVLIDEYQDTNAVQYTMTTLLV 268
Query: 430 SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFRSQSEVLDAT 489
RN F+VGD QSIY +R A+ Q +F+ K+I L++N+RS++ +L+A
Sbjct: 269 EKRRNLFVVGDPDQSIYSWRGANV----QNILNFERDYPGAKVIQLEQNYRSRTNILNAA 324
Query: 490 NSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQQNQDLAVEDDS 549
N++ +H + E+ +L AG + L + DD
Sbjct: 325 NALISHNTNRFEKELW----SELGAGEKVK-----------------------LFIGDDD 357
Query: 550 NQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY----GIPLVTD 605
E + VA +I H E ++ ++ + + ++ + F+DY GIP V
Sbjct: 358 R----AEAEFVASQISYHHKEHQISLSEMVIFYRTNAQS----RVFEDYLLYRGIPYVIV 409
Query: 606 GGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQNLPDQHK 665
GG Y + E+ +L LR + + A + P E + + ++ ++ +
Sbjct: 410 GGISFYQRR-EIKDILAFLRFAQSGADFVAFARTINLPKRGLGETTIEK--IRQSANEER 466
Query: 666 QNLYEKMEN-ARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIWKIYNDK 724
+Y E +N + + +T L + R S S+ +L+
Sbjct: 467 MTIYAFCEALLKNTPMKSIVRLTAKQREGLTEYLAIVQELRTLSKAGSVRELVLAAIEKT 526
Query: 725 FYYDYVGSLPKS-EQRQANLYALALRADNFEKTGFK-GLSRFIRMIDKILENQNDLADVE 782
Y +Y+ +S E R+ NL L +A +E + L F+ + L++ D A+
Sbjct: 527 KYLNYLMEDKESYEDRRENLDELITKAVEWEISATDPSLEAFLEELS--LKSSLDEANQA 584
Query: 783 VALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIADMKE 842
V ++LMTIH KGLEF F++
Sbjct: 585 V----ERLSLMTIHNGKGLEFTTTFLVG-------------------------------- 608
Query: 843 ELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYL 893
LEE L P V N RE + E+ RL YV +TR+++ LYL
Sbjct: 609 -LEEDLFPHVNSK--------NNRE----DVEEERRLCYVGITRAKEYLYL 646
>gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 893
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 200/864 (23%), Positives = 357/864 (41%), Gaps = 173/864 (20%)
Query: 105 TALKQFLSE-QLLGLQTADIGTMDAFTQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDV 163
T ++ SE + LGL I T+ AF KL++ + GI+PN + + K ++ N V
Sbjct: 32 TRARRLFSELENLGLT---IQTIHAFCYKLISSFPIEAGIAPNCTLSECKELHSIIFNKV 88
Query: 164 F------DDLFTDYRTGDQAELFTKLVRNFAGNRKDSSNFRQIIY-------KIYDFSQA 210
DD+ D+ +L L+ R S+N + I +I+D
Sbjct: 89 LHNETVQDDINLIATEIDENKL-RDLLYTLCIKRSISANDSKYIKDKLSAPDEIHDLQSE 147
Query: 211 TDNPQRWLLENFLKGANTYKDFSAIPEQEVKDFLNT---LQETALALRDVTDLE--DYKQ 265
T L E +G+ + +SAI V L+T + T+++ D T ++ D K
Sbjct: 148 TIEHVERLAEILSEGSKRDQSYSAILYSTVIPVLDTGIQKKRTSVSYSDDTGIKWNDTK- 206
Query: 266 VTAKGTPTAAYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLANDIATLIPSGNDVTVAGVK 325
IE L L +S + + + +A + + V+
Sbjct: 207 -----------------IENLAKVFLKSES-HEKKSISSIATKSILEKFKDAEQIIESVQ 248
Query: 326 YPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSKQYLQAKMQENAFEFSDI 385
VF + +R + + IFK L + +V + Y K + +++DI
Sbjct: 249 NVVF----THIRDMNSYQ-IFKRTSSLLGVFKV-------YVDLYNSEKSKNALLDYNDI 296
Query: 386 AHFAIQILEENDAIRQLYID---KYHEVMVDEYQDNNHTQERMLELLSN--------GRN 434
A +L + D + + K ++VDE QDN+ +Q +++ L + R
Sbjct: 297 IDLATNLLSDPDHKDWVLFNLDQKIDHILVDEAQDNSISQWKIITNLCDEFFAGNDEKRT 356
Query: 435 RFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLI--LLKENFRSQSEVLDATNSV 492
F+VGD+KQSIYRF+ A+P +FN + F I L+++FRS EVL + +
Sbjct: 357 LFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTGGRDWISCQLEKSFRSTPEVLMLVDRI 416
Query: 493 FTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVL-----IYDTKDQQNQDLAVED 547
F + EI ++D + + +P+ +N+ + + K+++ + L +
Sbjct: 417 FNNFR----AEISFND-------NEIKHVPHRENDQGYIEIWPALPRRKEKEQRALQIPL 465
Query: 548 DSNQISLGEVKLVAKEII-RLHN-----------EEKVQFEDITLLVSSRTRN---DGIL 592
+ +L+A+ I R+HN + ++ DI +LV R RN D I+
Sbjct: 466 TCKEGYTIADRLLAQTIANRIHNWLNEGRILVAKDRHIEPRDIMILV--RQRNVLVDYII 523
Query: 593 QTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL---NDYALVALLRSPMFAFDE 649
+P+V ++Y + ++ + + D + + L ND AL L+SP+F F E
Sbjct: 524 SELKKANVPVVG----RDYFRIMDYIAVQDLIALAEFLLLQANDLALANALKSPLFNFTE 579
Query: 650 DDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSL 709
DDL +A D+ + +L+E+ +Q + + ++L+ LS E L
Sbjct: 580 DDLFNIAY----DRKEHSLWER-----------IQDYSVVIYSELNYLIN--LSRTESPL 622
Query: 710 LNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMID 769
+L+ I + KF + NL FE + ++I+
Sbjct: 623 --ALFTHILRTGKKKFAARLGLECFEVLDEFMNLVL------QFENPSLQAFVQWIK--- 671
Query: 770 KILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNID------KKFSIQDMTSP 823
EN ++ + ++ +NAV +MTIHKSKGL+ VF+++ + + +P
Sbjct: 672 ---ENNPEIKN-DMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESIIFDGTEAP 727
Query: 824 LILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLATLSEQMRLLYVA 883
+ N + KRE +L +E +RLLYVA
Sbjct: 728 FWCGKNNNAYCDQV---------------------------KREKKLEDYNEYLRLLYVA 760
Query: 884 MTRSEKKLYLVGKGSQEKLGDQYD 907
+TR+E +LY++ K +K G YD
Sbjct: 761 LTRAEDELYILSKEPVQK-GSWYD 783
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.317 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,189,241,200
Number of Sequences: 5470121
Number of extensions: 177927414
Number of successful extensions: 545230
Number of sequences better than 1.0e-05: 500
Number of HSP's better than 0.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 1444
Number of HSP's that attempted gapping in prelim test: 535296
Number of HSP's gapped (non-prelim): 7506
length of query: 1212
length of database: 1,894,087,724
effective HSP length: 145
effective length of query: 1067
effective length of database: 1,100,920,179
effective search space: 1174681830993
effective search space used: 1174681830993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 136 (57.0 bits)